Query 027811
Match_columns 218
No_of_seqs 114 out of 1152
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 02:44:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yby_A Translation elongation 100.0 2.3E-62 7.8E-67 421.6 20.2 165 49-213 22-186 (215)
2 1ueb_A EF-P, TT0860, elongatio 100.0 1E-59 3.5E-64 396.8 22.0 155 58-213 1-155 (184)
3 3tre_A EF-P, elongation factor 100.0 5.6E-60 1.9E-64 400.5 18.0 158 56-213 4-161 (191)
4 3oyy_A EF-P, elongation factor 100.0 3.8E-59 1.3E-63 395.4 20.8 156 57-213 3-160 (191)
5 3a5z_B EF-P, elongation factor 100.0 5.7E-60 1.9E-64 400.5 13.7 157 57-213 5-161 (191)
6 1bkb_A Translation initiation 100.0 1.4E-41 4.8E-46 273.7 17.9 126 55-180 5-132 (136)
7 1iz6_A Initiation factor 5A; S 100.0 4.2E-40 1.4E-44 266.0 18.0 122 57-178 5-129 (138)
8 3cpf_A Eukaryotic translation 100.0 1.3E-39 4.4E-44 263.0 15.0 119 56-174 4-126 (138)
9 2eif_A IF-5A, protein (eukaryo 100.0 1.2E-38 3.9E-43 256.9 18.0 119 57-178 9-128 (136)
10 1x6o_A Eukaryotic initiation f 100.0 9.1E-37 3.1E-41 254.9 16.2 118 57-174 29-158 (174)
11 3er0_A Eukaryotic translation 100.0 3E-37 1E-41 256.4 11.2 119 56-174 28-150 (167)
12 3hks_A EIF-5A-2, eukaryotic tr 100.0 2.1E-35 7.1E-40 245.3 16.4 119 56-174 26-150 (167)
13 1khi_A HEX1; membrane sealing, 99.5 4.5E-13 1.6E-17 111.5 14.0 116 56-177 32-163 (176)
14 1dj7_B Ferredoxin thioredoxin 64.2 1.4 4.8E-05 31.6 -0.0 26 164-189 32-58 (75)
15 1yfb_A Transition state regula 64.1 7.6 0.00026 26.1 3.7 32 144-177 20-51 (59)
16 3r8s_P 50S ribosomal protein L 59.1 28 0.00095 26.6 6.5 67 58-125 13-88 (114)
17 3v2d_T 50S ribosomal protein L 56.4 32 0.0011 27.4 6.7 67 58-125 16-91 (146)
18 1ed7_A Chitinase A1, (CHBD-CHI 56.1 3.9 0.00013 26.0 1.0 25 63-87 7-31 (45)
19 2ftc_K 39S ribosomal protein L 52.4 69 0.0023 23.7 7.5 62 62-124 2-71 (98)
20 4a1y_A Myelin P2 protein; tran 48.1 39 0.0013 25.9 5.9 45 96-140 51-96 (133)
21 1mvg_A Liver basic fatty acid 47.1 71 0.0024 24.1 7.2 45 95-139 46-91 (125)
22 3ppt_A Sodium-calcium exchange 46.3 66 0.0023 24.5 7.0 45 95-139 48-93 (133)
23 2zjr_M 50S ribosomal protein L 45.9 45 0.0015 27.1 6.1 66 59-125 22-96 (166)
24 1b56_A Fatty acid binding prot 44.9 82 0.0028 24.0 7.3 45 95-139 51-96 (135)
25 1ifc_A Intestinal fatty acid b 43.0 78 0.0027 24.0 6.9 45 95-139 47-92 (132)
26 1mdc_A Insect fatty acid bindi 42.6 90 0.0031 23.7 7.2 45 95-139 48-93 (132)
27 2l66_A SSO7C4, transcriptional 42.6 11 0.00037 24.4 1.6 31 144-176 10-40 (53)
28 1o8v_A Fatty acid binding prot 42.4 99 0.0034 23.5 7.4 45 95-139 50-95 (134)
29 2kca_A Bacteriophage SPP1 comp 40.9 86 0.0029 22.1 6.5 38 62-101 66-104 (109)
30 1mvf_D MAZE protein, PEMI-like 40.7 23 0.00079 24.5 3.2 31 146-178 13-43 (82)
31 1vyf_A SM14, 14 kDa fatty acid 40.5 85 0.0029 23.9 6.8 44 96-139 51-96 (135)
32 1k0h_A Gpfii; twisted beta-san 40.5 8.8 0.0003 29.2 1.0 32 60-94 71-103 (117)
33 3q6l_A Fatty acid-binding prot 40.1 1E+02 0.0035 24.2 7.3 45 95-139 69-114 (152)
34 2a0a_A DER F 13; beta barrel, 40.0 1.2E+02 0.0039 23.0 7.4 45 95-139 48-94 (131)
35 3p6d_A Fatty acid-binding prot 39.1 1.1E+02 0.0038 23.5 7.3 45 95-139 56-101 (139)
36 2k50_A Replication factor A re 38.9 53 0.0018 23.7 5.1 52 57-112 6-62 (115)
37 4a60_A Fatty acid-binding prot 37.8 96 0.0033 24.4 6.8 44 96-139 72-116 (154)
38 1fdq_A Fatty acid-binding prot 37.6 75 0.0026 24.0 6.0 45 95-139 48-93 (131)
39 2pp6_A Gifsy-2 prophage ATP-bi 37.5 69 0.0024 24.0 5.5 31 65-98 65-95 (102)
40 2rcq_A CRBP-II, retinol-bindin 37.1 1E+02 0.0036 23.7 6.8 45 95-139 52-99 (141)
41 3rsw_A Fatty acid-binding prot 37.1 74 0.0025 25.2 6.1 43 96-138 75-118 (158)
42 2f9h_A PTS system, IIA compone 36.9 32 0.0011 26.7 3.7 22 62-83 53-74 (129)
43 2qo4_A Liver-basic fatty acid 36.3 65 0.0022 24.3 5.4 45 96-140 48-93 (126)
44 1p6p_A Fatty acid-binding prot 36.3 63 0.0022 24.3 5.3 44 96-139 47-91 (125)
45 1ggl_A Protein (cellular retin 35.3 1.1E+02 0.0038 23.2 6.7 45 95-139 48-95 (134)
46 1crb_A Cellular retinol bindin 34.7 1.1E+02 0.0036 23.3 6.5 45 95-139 48-95 (134)
47 2f73_A L-FABP, fatty acid-bind 34.3 94 0.0032 24.3 6.2 44 96-139 70-115 (149)
48 1lpj_A Retinol-binding protein 32.8 1.3E+02 0.0044 22.7 6.7 45 95-139 48-95 (133)
49 1ftp_A Muscle fatty acid bindi 32.6 1.4E+02 0.0049 22.5 6.9 44 96-139 51-96 (133)
50 3e0e_A Replication protein A; 32.1 1.1E+02 0.0037 21.8 5.8 53 58-112 2-57 (97)
51 1eal_A Gastrotropin, ileal lip 31.5 1.1E+02 0.0038 23.0 6.0 44 96-139 47-92 (127)
52 3u30_A Ubiquitin, linear DI-ub 30.3 64 0.0022 24.9 4.6 91 89-182 16-113 (172)
53 2lba_A BABP protein; ileal bIl 29.4 1E+02 0.0035 23.6 5.5 45 95-139 51-97 (136)
54 2g7b_A Cellular retinoic acid- 28.7 1.2E+02 0.0043 22.9 6.0 44 96-139 50-95 (137)
55 3lnn_A Membrane fusion protein 27.6 2.8E+02 0.0095 23.4 9.4 54 61-114 219-283 (359)
56 1at0_A 17-hedgehog; developmen 27.5 1E+02 0.0036 23.5 5.4 30 56-85 84-119 (145)
57 3frn_A Flagellar protein FLGA; 25.9 63 0.0021 28.2 4.1 30 95-124 242-271 (278)
58 3vg7_A Fatty acid-binding prot 25.6 1.3E+02 0.0046 22.8 5.6 44 96-139 51-96 (132)
59 3elx_A Ileal bIle acid-binding 25.1 97 0.0033 23.8 4.7 44 96-139 51-96 (138)
60 2fhd_A RAD9 homolog, DNA repai 24.2 56 0.0019 26.2 3.1 37 62-98 62-110 (153)
61 2z14_A EF-hand domain-containi 22.8 98 0.0034 23.8 4.3 27 57-83 82-108 (133)
62 3o27_A Putative uncharacterize 22.6 67 0.0023 22.4 2.9 33 142-177 22-56 (68)
63 3b08_A Polyubiquitin-C, ubiqui 21.9 1E+02 0.0035 22.7 4.2 85 95-183 2-94 (152)
64 2ciu_A TIM21P, import inner me 21.7 2.7E+02 0.0094 21.3 7.8 52 72-143 66-121 (127)
65 2hc8_A PACS, cation-transporti 21.5 82 0.0028 23.1 3.5 24 50-73 13-39 (113)
66 2uxt_A Protein SUFI, SUFI; oxi 20.7 1.8E+02 0.0062 26.1 6.4 51 65-122 180-230 (451)
67 2kl5_A Uncharacterized protein 20.5 71 0.0024 24.2 2.9 26 58-83 1-26 (110)
68 1at0_A 17-hedgehog; developmen 20.3 1.7E+02 0.0057 22.2 5.2 44 56-99 13-61 (145)
69 2l55_A SILB,silver efflux prot 20.1 1.6E+02 0.0055 20.6 4.7 33 59-91 43-80 (82)
No 1
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=100.00 E-value=2.3e-62 Score=421.59 Aligned_cols=165 Identities=25% Similarity=0.434 Sum_probs=146.3
Q ss_pred cceeeeeeeeEecCCCCCccEEEECCeEEEEEEeEEeeCCCCCeeEEEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEE
Q 027811 49 WSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFT 128 (218)
Q Consensus 49 ~~~~~~R~~~i~andiRkG~~I~~dG~~y~Vl~~~h~kpGkG~A~vr~klknL~TG~k~e~tf~s~dkvE~v~le~k~~q 128 (218)
.+++|.|++|+++|+||+|++|++||+||+|++++|+|||||+|++|+|+|||.||+++|.+|+++|+||.|++++++||
T Consensus 22 ~~~~~~rg~Mi~a~dlKkG~~I~idG~p~~Vve~~hvKPGKG~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~~Q 101 (215)
T 1yby_A 22 TSLYKKAGLMISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQ 101 (215)
T ss_dssp ---------CEEGGGCCTTCEEEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEE
T ss_pred hhhhhhCCEEEEhhhccCCCEEEECCEEEEEEEEEEEcCCCCceEEEEEEEECCCCCEEEEEECCCCEEecceEEEEEEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCeEEEecCCCccccccCchhhhhhhhhcCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCccc
Q 027811 129 CLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYGP 208 (218)
Q Consensus 129 yLY~Dgd~~vFMD~ETyEQi~v~~d~lg~~~~fL~eg~~V~V~~~eg~~i~V~LP~~V~l~V~etep~vKGdTat~~~K~ 208 (218)
|||.||+.|+|||+|||||++||++.+|++.+||+|||+|+|++|+|+||+|+||++|+|+|+||||++|||||++++||
T Consensus 102 ylY~Dgd~y~FMD~ETyEQi~l~~~~lgd~~~fLkEg~~v~v~~~~g~~i~velP~~V~l~V~eteP~vkGdTa~~~~Kp 181 (215)
T 1yby_A 102 YLYNDGDLYYFMDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEVTDTEPGFKGDTATGATKP 181 (215)
T ss_dssp EEEEETTEEEEECTTTCCEEEEEHHHHTTTTTTCCTTCEEEEEEETTEEEEEECCSEEEEEEEEC-------CCSCCEEE
T ss_pred EEEeCCCEEEEccCCCCeeEEecHHHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCccccccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEe
Q 027811 209 TISKH 213 (218)
Q Consensus 209 A~Let 213 (218)
|+|||
T Consensus 182 A~leT 186 (215)
T 1yby_A 182 AIVET 186 (215)
T ss_dssp EEETT
T ss_pred EEEeC
Confidence 99997
No 2
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=100.00 E-value=1e-59 Score=396.84 Aligned_cols=155 Identities=25% Similarity=0.541 Sum_probs=153.6
Q ss_pred eEecCCCCCccEEEECCeEEEEEEeEEeeCCCCCeeEEEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEEeCCeE
Q 027811 58 KVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTA 137 (218)
Q Consensus 58 ~i~andiRkG~~I~~dG~~y~Vl~~~h~kpGkG~A~vr~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~Dgd~~ 137 (218)
|+++|+||+|++|++||+||+|++++|+|||||+|++|+++|||.||+++|.+|+++|++|.|++++++|||||.||+.|
T Consensus 1 mi~a~dlkkG~~i~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~~ 80 (184)
T 1ueb_A 1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGEEM 80 (184)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEEEETTSCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEETTEE
T ss_pred CcchhhcCCCCEEEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEECCCCEEEeeeEEEEEEEEEEeCCCEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCccccccCchhhhhhhhhcCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCcccEEEEe
Q 027811 138 FVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYGPTISKH 213 (218)
Q Consensus 138 vFMD~ETyEQi~v~~d~lg~~~~fL~eg~~V~V~~~eg~~i~V~LP~~V~l~V~etep~vKGdTat~~~K~A~Let 213 (218)
+|||+|||||++||++.+|++ +||+|||+|+|++|+|+||+|+||.+|+|+|++|+|++|||||++++|||+|||
T Consensus 81 ~FMD~etyeq~~l~~~~lgd~-~~L~eg~~v~v~~~~g~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~let 155 (184)
T 1ueb_A 81 VFMDLETYEQFAVPRSRVVGA-EFFKEGMTALGDMYEGQPIKVTPPTVVELKVVDTPPGVRGDTVSGGSKPATLET 155 (184)
T ss_dssp EEEETTTCCEEEEEGGGBTTG-GGCCTTCEEEEEEETTEEEEEECCSEEEEEEEECCSSSCCSSSSCSEEEEEETT
T ss_pred EEeeCCCceeEEcCHHHcChh-hhcCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCCccEEEcC
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999999997
No 3
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=100.00 E-value=5.6e-60 Score=400.53 Aligned_cols=158 Identities=22% Similarity=0.327 Sum_probs=128.5
Q ss_pred eeeEecCCCCCccEEEECCeEEEEEEeEEeeCCCCCeeEEEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEEeCC
Q 027811 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (218)
Q Consensus 56 ~~~i~andiRkG~~I~~dG~~y~Vl~~~h~kpGkG~A~vr~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~Dgd 135 (218)
++|+++++||+|++|++||+||+|++++|+|||||+|++|+++|||.||++++.+|+++|++|.|+++++++||||.||+
T Consensus 4 m~m~~a~dlkkG~~I~~dG~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd 83 (191)
T 3tre_A 4 MATHSTNEFRGGLKVMVDGDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYNDGE 83 (191)
T ss_dssp --CEEGGGCCTTCEEEETTEEEEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEETTCEECBCCEEEEEEEEEEECSS
T ss_pred eEEEEHHHCCCCCEEEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEeCCCCEEEeceEEEEEEEEEEEcCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCccccccCchhhhhhhhhcCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCcccEEEEe
Q 027811 136 TAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYGPTISKH 213 (218)
Q Consensus 136 ~~vFMD~ETyEQi~v~~d~lg~~~~fL~eg~~V~V~~~eg~~i~V~LP~~V~l~V~etep~vKGdTat~~~K~A~Let 213 (218)
.|+|||+|||||++||++.+|++.+||+|||+|+|.+|+|+||+|+||.+|+|+|+||+|++|||||++++|||+|||
T Consensus 84 ~~~FMD~etyEq~~l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~let 161 (191)
T 3tre_A 84 FWHFMTSENYEQHAASKEAVAEAKQWLKEEALCMVTMWNGVPLSVEPPNFVELKITETEPGVRGDTATGGTKRAKLET 161 (191)
T ss_dssp CEEEEESSSCCEEEECHHHHGGGGGGCCTTCEEEEEEETTEEEEEECCSCC---------------------------
T ss_pred cEEEccCCchHheecchhHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCcCeEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
No 4
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=100.00 E-value=3.8e-59 Score=395.39 Aligned_cols=156 Identities=20% Similarity=0.358 Sum_probs=152.6
Q ss_pred eeEecCCCCCccEEEECCeEEEEEEeEEeeCCCCCeeEEEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEEeCCe
Q 027811 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDT 136 (218)
Q Consensus 57 ~~i~andiRkG~~I~~dG~~y~Vl~~~h~kpGkG~A~vr~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~Dgd~ 136 (218)
+|+++|+||+|++|++||+||+|++++|+|||||+|++|+++|||.||++++.+|+++|++|.|+++++++||||.||+.
T Consensus 3 ~m~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd~ 82 (191)
T 3oyy_A 3 SMKTAQEFRAGQVANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPL 82 (191)
T ss_dssp CCEEGGGCCTTCEEEETTEEEEEEEEEEECCTTSCCEEEEEEEETTTCCEEEEEEETTCEEEECCCEEEEEEEEEECSSS
T ss_pred ccccHHhCCCCCEEEECCEEEEEEEEEeeeCCCCcEEEEEEEEECCCCCEEEEEeCCCCEEEeeeEEEEEEEEEEecCCE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCccccccCchhhhhhhhhcCCCCE--EEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCcccEEEEe
Q 027811 137 AFVIESETFEQLEVPLDVFGKAGAYLQEGMK--VWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYGPTISKH 213 (218)
Q Consensus 137 ~vFMD~ETyEQi~v~~d~lg~~~~fL~eg~~--V~V~~~eg~~i~V~LP~~V~l~V~etep~vKGdTat~~~K~A~Let 213 (218)
|+||| |||||++||++.+|++.+||+|||+ |+|.+|+|+||+|+||++|+|+|+||+|++|||||++++|||+|||
T Consensus 83 ~~FMD-etyEq~~l~~~~lgd~~~~L~eg~~~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~let 160 (191)
T 3oyy_A 83 YVFMD-SEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNN 160 (191)
T ss_dssp EEEEE-TTCCEEEECGGGCTTTGGGCCTTCCCCEEEEEETTEEEEEECCSEEEEEEEEECCCCSCCCC--CEEEEEETT
T ss_pred EEEEe-cChhheeCChHHhhhHHhhCcCCCEeEEEEEEECCEEEEEECCCEEEEEEEEcCCCccccccCCCCceEEEeC
Confidence 99999 9999999999999999999999999 9999999999999999999999999999999999999999999998
No 5
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=100.00 E-value=5.7e-60 Score=400.46 Aligned_cols=157 Identities=25% Similarity=0.389 Sum_probs=132.7
Q ss_pred eeEecCCCCCccEEEECCeEEEEEEeEEeeCCCCCeeEEEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEEeCCe
Q 027811 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDT 136 (218)
Q Consensus 57 ~~i~andiRkG~~I~~dG~~y~Vl~~~h~kpGkG~A~vr~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~Dgd~ 136 (218)
+.+++|+||+|++|++||+||+|++++|+|||||+|++|+|+|||.||+++|.+|+++|++|.|+++++++||||.||+.
T Consensus 5 ~~~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~ 84 (191)
T 3a5z_B 5 ATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEF 84 (191)
T ss_dssp -CEESTTCCTTCEEEETTEEEEEEEEEEECCTTCCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEECSSC
T ss_pred ceeeHHHCCCCCEEEECCEEEEEEEEEEEcCCCCcEEEEEEEEECCCCCEEEEEECCCCEEEeeEEEEEEEEEEEeCCCE
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCccccccCchhhhhhhhhcCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCcccEEEEe
Q 027811 137 AFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYGPTISKH 213 (218)
Q Consensus 137 ~vFMD~ETyEQi~v~~d~lg~~~~fL~eg~~V~V~~~eg~~i~V~LP~~V~l~V~etep~vKGdTat~~~K~A~Let 213 (218)
|+|||+|||||++||++.+|++.+||+|||+|+|++|+|+||+|+||.+|+|+|+||||++|||||++++|||+|||
T Consensus 85 ~~FMD~etyeQ~~l~~~~lgd~~~~l~e~~~v~v~~~~g~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~let 161 (191)
T 3a5z_B 85 WHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLST 161 (191)
T ss_dssp EEEECTTTCCEEEECHHHHCTTTTTCCSSEECEEEEETTEEEEEECCSCCCCCCC----------------------
T ss_pred EEEeeCCCCeEEEccHHHhhhHHhhcCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCCccEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
No 6
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=1.4e-41 Score=273.70 Aligned_cols=126 Identities=19% Similarity=0.246 Sum_probs=121.5
Q ss_pred eeeeEecCCCCCccEEEECCeEEEEEEeEEeeCCCC-CeeEEEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEEe
Q 027811 55 RAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRG-GAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTE 133 (218)
Q Consensus 55 R~~~i~andiRkG~~I~~dG~~y~Vl~~~h~kpGkG-~A~vr~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~D 133 (218)
+...+++++||+|++|++||+||+|++++|+||||| +|++|+++|||.||+++|.+|+++|++|.|+++++++||||.|
T Consensus 5 ~t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~~qylY~d 84 (136)
T 1bkb_A 5 STKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSVS 84 (136)
T ss_dssp CCEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEEC
T ss_pred EEEEEEHHHccCCCEEEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEEEEEEEec
Confidence 467799999999999999999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCccccccCchh-hhhhhhhcCCCCEEEEEEECCEEEEE
Q 027811 134 NDTAFVIESETFEQLEVPLDV-FGKAGAYLQEGMKVWLQLYDGRALSG 180 (218)
Q Consensus 134 gd~~vFMD~ETyEQi~v~~d~-lg~~~~fL~eg~~V~V~~~eg~~i~V 180 (218)
|+.|+|||+|||||++|+.+. +|++.+||+||++|+|++|+|++.-+
T Consensus 85 g~~~~fMD~etyeq~~l~~~~~~gd~~~~l~e~~~v~v~~~~g~~~~~ 132 (136)
T 1bkb_A 85 GDVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEVWQILDRYKII 132 (136)
T ss_dssp SSEEEEEETTTCCEEEEEGGGBCHHHHTTCCTTCEEEEEEETTEEEEE
T ss_pred CCEEEEEeCCCCeEEEeccccchhHHHhhCCCCCEEEEEEECCEEEEE
Confidence 999999999999999999999 99999999999999999999987643
No 7
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=4.2e-40 Score=265.96 Aligned_cols=122 Identities=25% Similarity=0.318 Sum_probs=118.5
Q ss_pred eeEecCCCCCccEEEECCeEEEEEEeEEeeCCC-CCeeEEEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEEeCC
Q 027811 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (218)
Q Consensus 57 ~~i~andiRkG~~I~~dG~~y~Vl~~~h~kpGk-G~A~vr~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~Dgd 135 (218)
..+++++||+|++|++||+||+|++++|+|||| |+|++|+++|||.||++++.+|+++|++|.|+++++++||||.||+
T Consensus 5 ~~i~a~~lkkG~~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qylY~dg~ 84 (138)
T 1iz6_A 5 TKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAITPD 84 (138)
T ss_dssp EEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEECSS
T ss_pred EEEEHHHccCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEeeceEEEEEEEEEEeCCC
Confidence 458899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCcccccc--CchhhhhhhhhcCCCCEEEEEEECCEEE
Q 027811 136 TAFVIESETFEQLEV--PLDVFGKAGAYLQEGMKVWLQLYDGRAL 178 (218)
Q Consensus 136 ~~vFMD~ETyEQi~v--~~d~lg~~~~fL~eg~~V~V~~~eg~~i 178 (218)
.|+|||+|||||++| |++.+|++.+||+||++|+|+++.|+..
T Consensus 85 ~~~fMD~etyeq~~l~~~~~~lgd~~~~l~e~~~V~v~~~~G~~~ 129 (138)
T 1iz6_A 85 TVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGRIK 129 (138)
T ss_dssp EEEEECTTTCCEEEEEHHHHBCGGGTTTCCTTCEEEEEEETTEEE
T ss_pred EEEEEeCCCCceEEeeCCHHHHHHHHHhCCCCCEEEEEEECCcEE
Confidence 999999999999999 8999999999999999999999999854
No 8
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=263.05 Aligned_cols=119 Identities=13% Similarity=0.190 Sum_probs=112.2
Q ss_pred eeeEecCCCCCccEEEECCeEEEEEEeEEeeCCCC-CeeEEEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEEeC
Q 027811 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRG-GAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEN 134 (218)
Q Consensus 56 ~~~i~andiRkG~~I~~dG~~y~Vl~~~h~kpGkG-~A~vr~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~Dg 134 (218)
...+++++||+|++|++||+||+|++++|+||||| +|++|+++|||.||+++|.+|++++++|.|++++++|||||.||
T Consensus 4 t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~kve~~~v~~~~~qyly~dg 83 (138)
T 3cpf_A 4 TFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQD 83 (138)
T ss_dssp EEEEEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEET
T ss_pred cEEEEHHHCcCCCEEEECCEEEEEEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEEecC
Confidence 35789999999999999999999999999999995 99999999999999999999999999999999999999999999
Q ss_pred CeEEEecCCCccccc--cCchhhhhhh-hhcCCCCEEEEEEEC
Q 027811 135 DTAFVIESETFEQLE--VPLDVFGKAG-AYLQEGMKVWLQLYD 174 (218)
Q Consensus 135 d~~vFMD~ETyEQi~--v~~d~lg~~~-~fL~eg~~V~V~~~e 174 (218)
+.|+|||+|||||++ +|++.+|++. +||+||++|.|.+|.
T Consensus 84 ~~~~fMD~etyeq~~l~l~~~~lgd~~~~~l~eg~~v~V~~~~ 126 (138)
T 3cpf_A 84 GYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLS 126 (138)
T ss_dssp TEEEEECTTSCEECCSBCCSHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred CEEEEEcCCCCeEeeecCCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence 999999999999999 7999999999 899999999999984
No 9
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=100.00 E-value=1.2e-38 Score=256.88 Aligned_cols=119 Identities=21% Similarity=0.249 Sum_probs=115.3
Q ss_pred eeEecCCCCCccEEEECCeEEEEEEeEEeeCCC-CCeeEEEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEEeCC
Q 027811 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (218)
Q Consensus 57 ~~i~andiRkG~~I~~dG~~y~Vl~~~h~kpGk-G~A~vr~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~Dgd 135 (218)
..+++++||+|++|++||+||+|++++|+|||| |+|++|+++|||.||+++|.+|++++++|.|+++++++||||.||+
T Consensus 9 ~~i~~~~lr~G~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qyly~dg~ 88 (136)
T 2eif_A 9 KQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLAIMGD 88 (136)
T ss_dssp EEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEEEETT
T ss_pred EEEEHHHCcCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEeccccEeeeEEEEEEecCC
Confidence 447899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCccccccCchhhhhhhhhcCCCCEEEEEEECCEEE
Q 027811 136 TAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL 178 (218)
Q Consensus 136 ~~vFMD~ETyEQi~v~~d~lg~~~~fL~eg~~V~V~~~eg~~i 178 (218)
.|+|||+|||||++|+++ |++.+ |+||++|+|++|+|++.
T Consensus 89 ~~~fMD~etyeq~~l~~~--gd~~~-l~e~~~v~v~~~~G~~~ 128 (136)
T 2eif_A 89 MVQIMDLQTYETLELPIP--EGIEG-LEPGGEVEYIEAVGQYK 128 (136)
T ss_dssp EEEEEETTTCCEEEEECC--SCCTT-CSTTCEEEEEEETTEEE
T ss_pred EEEEEeCCCceEEEecCC--Cchhh-CCCCCEEEEEEECCEEE
Confidence 999999999999999999 88889 99999999999999864
No 10
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=100.00 E-value=9.1e-37 Score=254.91 Aligned_cols=118 Identities=20% Similarity=0.327 Sum_probs=111.3
Q ss_pred eeEecCCCCCccEEEECCeEEEEEEeEEeeCCC-CCeeEEEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEEeCC
Q 027811 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (218)
Q Consensus 57 ~~i~andiRkG~~I~~dG~~y~Vl~~~h~kpGk-G~A~vr~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~Dgd 135 (218)
+.+++++||+|++|+++|+||+|++++|+|||| |+|+||+++|||+||+++|.+|+++++||.|++++++|||||.||+
T Consensus 29 ~~i~a~dlrkG~~I~idG~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~~kve~~~Ver~~~QyLY~dgd 108 (174)
T 1x6o_A 29 YPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVPFVKTYTYSVLDIQAN 108 (174)
T ss_dssp EEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEECC
T ss_pred EEEEHHHccCCCEEEECCEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEEecCC
Confidence 678999999999999999999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred -------eEEEecCCCcccccc--Cch-hhhhh-hhhcCCCCEEEEEEEC
Q 027811 136 -------TAFVIESETFEQLEV--PLD-VFGKA-GAYLQEGMKVWLQLYD 174 (218)
Q Consensus 136 -------~~vFMD~ETyEQi~v--~~d-~lg~~-~~fL~eg~~V~V~~~e 174 (218)
.|+|||+|||||++| |++ .+|++ .+||+||++|.|.+|.
T Consensus 109 ~~~~~~g~~~fMD~etyeq~~l~~p~~~~lgd~i~~~l~eg~~v~V~~~~ 158 (174)
T 1x6o_A 109 EDPSLPAHLSLMDDEGESREDLDMPPDPALATQIKEQFDSGKDVLVVVVS 158 (174)
T ss_dssp SSTTSCCEEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cccccccEEEEEcCCCceEEEeeCCchhhHHHHHHHHhhCCCEEEEEEEe
Confidence 999999999999999 788 89999 7999999999999984
No 11
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-37 Score=256.36 Aligned_cols=119 Identities=16% Similarity=0.272 Sum_probs=114.7
Q ss_pred eeeEecCCCCCccEEEECCeEEEEEEeEEeeCCC-CCeeEEEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEEeC
Q 027811 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEN 134 (218)
Q Consensus 56 ~~~i~andiRkG~~I~~dG~~y~Vl~~~h~kpGk-G~A~vr~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~Dg 134 (218)
...+++++||+|++|+++|+||+|++++|+|||| |+|+||+++|||+||++++.+|+++++||.|+++++++||||.||
T Consensus 28 t~pi~a~dlrkG~~I~idG~p~~Vve~~~~KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~kve~~~ver~~~QyLY~dg 107 (167)
T 3er0_A 28 TYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDIDD 107 (167)
T ss_dssp CEEEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSEEEECCCCEEEEECCCCTT
T ss_pred eEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCcCceEEEEEEEEcCCCCEEEEEEcCCCccccceEEEeeEEEEEEcC
Confidence 3568899999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CeEEEec--CCCccccccCchhhhhhh-hhcCCCCEEEEEEEC
Q 027811 135 DTAFVIE--SETFEQLEVPLDVFGKAG-AYLQEGMKVWLQLYD 174 (218)
Q Consensus 135 d~~vFMD--~ETyEQi~v~~d~lg~~~-~fL~eg~~V~V~~~e 174 (218)
+.|+||| .|||||+.||++.+|+++ .||+||++|.|.+|+
T Consensus 108 ~~~~FMD~~~etyeqi~l~~~~lgd~i~~~l~eg~~v~V~~~~ 150 (167)
T 3er0_A 108 GFLSLMNMDGDTKDDVKAPEGELGDSLQTAFDEGKDLMVTIIS 150 (167)
T ss_dssp TTCCCCCSSSCCCSCCCCCCSSHHHHHHHTTSSCCCCEEEEEE
T ss_pred CEEEEEeCCCCeeEEEEcCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence 9999999 899999999999999997 689999999999884
No 12
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=100.00 E-value=2.1e-35 Score=245.25 Aligned_cols=119 Identities=14% Similarity=0.175 Sum_probs=111.1
Q ss_pred eeeEecCCCCCccEEEECCeEEEEEEeEEeeCCC-CCeeEEEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEEeC
Q 027811 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEN 134 (218)
Q Consensus 56 ~~~i~andiRkG~~I~~dG~~y~Vl~~~h~kpGk-G~A~vr~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~Dg 134 (218)
..-+++++||+|++|+++|+||+|++++|+|||| |+|+||+++|||+||+++|.+|++++++|.|+|++++|||||.|+
T Consensus 26 t~pi~~~dlrkG~~I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~kve~~~ver~~~QyLY~d~ 105 (167)
T 3hks_A 26 TYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITE 105 (167)
T ss_dssp EEEEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEECT
T ss_pred cEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCCEEEeeeEEEEEEEEEEECC
Confidence 4568899999999999999999999999999999 999999999999999999999999999999999999999999965
Q ss_pred -CeEEEecCCCcccc--ccCch-hhhhhh-hhcCCCCEEEEEEEC
Q 027811 135 -DTAFVIESETFEQL--EVPLD-VFGKAG-AYLQEGMKVWLQLYD 174 (218)
Q Consensus 135 -d~~vFMD~ETyEQi--~v~~d-~lg~~~-~fL~eg~~V~V~~~e 174 (218)
+.|+|||+|||||+ .||.+ .+++.+ .||+||++|.|.+|+
T Consensus 106 d~~~~fMD~etyeQ~~l~lp~~~~lg~~i~~~l~eG~~v~V~v~~ 150 (167)
T 3hks_A 106 DGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMS 150 (167)
T ss_dssp TSBEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCEEEEEcCCCceEEEEecCchHHHHHHHHHHhhCCCEEEEEEEe
Confidence 58999999999996 56677 888876 899999999998884
No 13
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=99.49 E-value=4.5e-13 Score=111.55 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=97.6
Q ss_pred eeeEecCCCCCccEEEECCeEEEEEEeEEe-eCCCCCeeEEEEEeeCCCCCEEEEEecCC--------CcEEeeeEEeeE
Q 027811 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHK-QRGRGGAMMQMELRDIDTGNKVSLRFGTE--------EAVERVFVEDKS 126 (218)
Q Consensus 56 ~~~i~andiRkG~~I~~dG~~y~Vl~~~h~-kpGkG~A~vr~klknL~TG~k~e~tf~s~--------dkvE~v~le~k~ 126 (218)
...+++++||+|.+|.++|+||+|+++..+ ||||- ++...||+||+|.|...+++ ++++++.++ +
T Consensus 32 T~p~q~~~LrkG~yv~IkGrPCKIveiStS~KtGKH----~ivaiDIFTgkK~edi~Pss~p~p~~~~hnm~VPvVk--~ 105 (176)
T 1khi_A 32 TVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTMLGPVFK--Q 105 (176)
T ss_dssp EEEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE----EEEEEETTTCCEEEEECCEECSSTTCCEEEEEEECCE--E
T ss_pred cEEEEhhheeeCCEEEECCeeeEEEEEEccCCCCce----EEEEEEccCCcEeEEeccccCCCcccccceeccceeE--E
Confidence 356789999999999999999999999999 89996 89999999999999999988 899999996 9
Q ss_pred EEEEEEeCCeEEEecCCCcccccc--Cc-hhhhhhh-hhcCCCCE---EEEEEECCEE
Q 027811 127 FTCLYTENDTAFVIESETFEQLEV--PL-DVFGKAG-AYLQEGMK---VWLQLYDGRA 177 (218)
Q Consensus 127 ~qyLY~Dgd~~vFMD~ETyEQi~v--~~-d~lg~~~-~fL~eg~~---V~V~~~eg~~ 177 (218)
+|++..+++...+||.++|+-..| |. ..|++.+ ..+.+|.+ |.++-..|+-
T Consensus 106 yQlldI~dg~lsLMd~~G~~k~dl~lp~~~~l~~~i~~~f~~G~~~~~V~v~~amG~e 163 (176)
T 1khi_A 106 YRVLDMQDGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGRE 163 (176)
T ss_dssp EEEEEEETTEEEEECTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTEE
T ss_pred EEEEEEcCCeEEEEeCCCCEEeeeEccchHHHHHHHHHHhhCCCceEEEEEEeECCcE
Confidence 999999999999999988765555 43 2344443 45578865 7777777764
No 14
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=64.20 E-value=1.4 Score=31.60 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=19.3
Q ss_pred CCCEEEEE-EECCEEEEEeCCCeEEEE
Q 027811 164 EGMKVWLQ-LYDGRALSGSIPKRVACT 189 (218)
Q Consensus 164 eg~~V~V~-~~eg~~i~V~LP~~V~l~ 189 (218)
||..+++. .|+|+||+.+||-.|.+.
T Consensus 32 EGeV~~~v~~wkGr~ISanlP~~V~F~ 58 (75)
T 1dj7_B 32 EGEVAAVLTEWQGRPISANLPVLVKFE 58 (75)
T ss_dssp EEEEEEECSEETTEECCCSSCEEEEET
T ss_pred EEEEEEEEeeccCcEecCCCCEEEEEe
Confidence 34444433 489999999999998874
No 15
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=64.11 E-value=7.6 Score=26.13 Aligned_cols=32 Identities=9% Similarity=0.190 Sum_probs=25.5
Q ss_pred CccccccCchhhhhhhhhcCCCCEEEEEEECCEE
Q 027811 144 TFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRA 177 (218)
Q Consensus 144 TyEQi~v~~d~lg~~~~fL~eg~~V~V~~~eg~~ 177 (218)
.--|+.||+++.. ... |++|+.|.+...+|++
T Consensus 20 ~kGqItIPkeiR~-~Lg-i~~Gd~l~i~~~~~~I 51 (59)
T 1yfb_A 20 ELGRVVIPIELRR-TLG-IAEKDALEIYVDDEKI 51 (59)
T ss_dssp TTCEEECCHHHHH-HTT-CCTTCEEEEEEETTEE
T ss_pred CCCEEEeCHHHHH-HcC-CCCCCEEEEEEECCEE
Confidence 5679999998763 343 7999999999888864
No 16
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=59.13 E-value=28 Score=26.62 Aligned_cols=67 Identities=27% Similarity=0.409 Sum_probs=45.1
Q ss_pred eEecCCCCCccEEEE-----CCeEEEEEEeEEe---eCCCCCeeEEEEEeeCCCCCEEEEEecCCC-cEEeeeEEee
Q 027811 58 KVNASHVRPGNVIEK-----SGKMYQVIDAEHK---QRGRGGAMMQMELRDIDTGNKVSLRFGTEE-AVERVFVEDK 125 (218)
Q Consensus 58 ~i~andiRkG~~I~~-----dG~~y~Vl~~~h~---kpGkG~A~vr~klknL~TG~k~e~tf~s~d-kvE~v~le~k 125 (218)
..+..++++||+|.. +|.--++..|+-+ +.|+|- .-.+.++++..|-=+|.+|+-.. .++.+.+-++
T Consensus 13 ~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~-~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~ 88 (114)
T 3r8s_P 13 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGL-HSAFTVRKISNGEGVERVFQTHSPVVDSISVKRR 88 (114)
T ss_dssp CSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGG-GCEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred ccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCC-CeEEEEEEecCCccEEEEEecCCCccceEEEEEc
Confidence 356789999999976 3655555555422 234442 22567999999999999998644 3666666654
No 17
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=56.36 E-value=32 Score=27.39 Aligned_cols=67 Identities=18% Similarity=0.321 Sum_probs=44.5
Q ss_pred eEecCCCCCccEEEE-----CCeEEEEEEeEEe---eCCCCCeeEEEEEeeCCCCCEEEEEecCCC-cEEeeeEEee
Q 027811 58 KVNASHVRPGNVIEK-----SGKMYQVIDAEHK---QRGRGGAMMQMELRDIDTGNKVSLRFGTEE-AVERVFVEDK 125 (218)
Q Consensus 58 ~i~andiRkG~~I~~-----dG~~y~Vl~~~h~---kpGkG~A~vr~klknL~TG~k~e~tf~s~d-kvE~v~le~k 125 (218)
..+..++++||+|.+ +|.--++-.|+-+ +.|+|- .-.+.++++..|-=+|.+|+-.. .++.+.+-++
T Consensus 16 ~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl-~~tFtVRkis~gvGVEr~Fpl~SP~I~~IeVvrr 91 (146)
T 3v2d_T 16 RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGF-NTTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQR 91 (146)
T ss_dssp CCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGG-GCEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred hccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCC-CeEEEEEEecCCccEEEEEecCCCccceEEEEec
Confidence 356789999999875 5554444444421 224433 22567999999999999998644 3666666654
No 18
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=56.09 E-value=3.9 Score=25.97 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=20.8
Q ss_pred CCCCccEEEECCeEEEEEEeEEeeC
Q 027811 63 HVRPGNVIEKSGKMYQVIDAEHKQR 87 (218)
Q Consensus 63 diRkG~~I~~dG~~y~Vl~~~h~kp 87 (218)
..++|+++.++|+.|+++......+
T Consensus 7 ~Y~~Gd~Vty~G~~Y~c~q~hts~~ 31 (45)
T 1ed7_A 7 AYTAGQLVTYNGKTYKCLQPHTSLA 31 (45)
T ss_dssp EECTTCCEEETTEEECBCSCEEECT
T ss_pred eEcCCCEEEECCeEEEEEecCcCcC
Confidence 3578999999999999988777654
No 19
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=52.41 E-value=69 Score=23.74 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=38.5
Q ss_pred CCCCCccEEEE----CCeEEEEEEeEE---eeCCCCCeeEEEEEeeCCCCCEEEEEecCCCc-EEeeeEEe
Q 027811 62 SHVRPGNVIEK----SGKMYQVIDAEH---KQRGRGGAMMQMELRDIDTGNKVSLRFGTEEA-VERVFVED 124 (218)
Q Consensus 62 ndiRkG~~I~~----dG~~y~Vl~~~h---~kpGkG~A~vr~klknL~TG~k~e~tf~s~dk-vE~v~le~ 124 (218)
.++++||+|.. .|.--++..++- .+.|+|-. -..-+|++..|-=+|.+|+-... ++.+.+-+
T Consensus 2 P~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~-~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r 71 (98)
T 2ftc_K 2 PEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLG-ATFILRNVIEGQGVEICFELYNPRVQEIQVVK 71 (98)
T ss_pred CccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCC-cEEEEEEeccCceEEEEEecCCCceeEEEEEE
Confidence 57899999865 333334444442 12344432 36889999999999999976433 44444443
No 20
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=48.06 E-value=39 Score=25.90 Aligned_cols=45 Identities=11% Similarity=0.208 Sum_probs=34.1
Q ss_pred EEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eCCeEEEe
Q 027811 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFVI 140 (218)
Q Consensus 96 ~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dgd~~vFM 140 (218)
+.++...+.+..+..|+-|+.+|.-..+.+.++-++. ||+.++..
T Consensus 51 ~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 96 (133)
T 4a1y_A 51 ITIRTESTFKNTEISFQLGQEFEETTADNRKTKSIVTLQRGSLNQV 96 (133)
T ss_dssp EEEEEEETTEEEEEEECTTBCEEEECTTCCEEEEEEEEETTEEEEE
T ss_pred EEEEEecCCccEEEEEEcCCcEEEEcCCCCEEEEEEEEcCCEEEEE
Confidence 3344555667788899999999999999988887775 77776443
No 21
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=47.06 E-value=71 Score=24.06 Aligned_cols=45 Identities=11% Similarity=0.201 Sum_probs=36.6
Q ss_pred EEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eCCeEEE
Q 027811 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (218)
Q Consensus 95 r~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dgd~~vF 139 (218)
+..++...+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 46 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 91 (125)
T 1mvg_A 46 DFVVTSKTPRQTVTNSFTLGKEADITTMDGKKLKCTVHLANGKLVT 91 (125)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEETTTEEEEEEEEECSSEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEeeEEEEEECCEEEE
Confidence 45666677788899999999999999999988887776 7776654
No 22
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding proteins, squid nerve, regulatory factor, beta-sandwich, fatty acid; HET: PAM; 1.28A {Loligo pealei} SCOP: b.60.1.0 PDB: 3pp6_A*
Probab=46.29 E-value=66 Score=24.54 Aligned_cols=45 Identities=4% Similarity=0.132 Sum_probs=35.7
Q ss_pred EEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eCCeEEE
Q 027811 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (218)
Q Consensus 95 r~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dgd~~vF 139 (218)
++.++...+.+..+..|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 48 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 93 (133)
T 3ppt_A 48 SWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAMIQ 93 (133)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeCCccEEEEEECCCcEEeEcCCCCEEEEEEEEECCEEEE
Confidence 45566777888899999999999999898888877665 7776543
No 23
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=45.87 E-value=45 Score=27.08 Aligned_cols=66 Identities=21% Similarity=0.326 Sum_probs=44.6
Q ss_pred EecCCCCCccEEEE-----CCeEEEEEEeEE--e-eCCCCCeeEEEEEeeCCCCCEEEEEecCCCc-EEeeeEEee
Q 027811 59 VNASHVRPGNVIEK-----SGKMYQVIDAEH--K-QRGRGGAMMQMELRDIDTGNKVSLRFGTEEA-VERVFVEDK 125 (218)
Q Consensus 59 i~andiRkG~~I~~-----dG~~y~Vl~~~h--~-kpGkG~A~vr~klknL~TG~k~e~tf~s~dk-vE~v~le~k 125 (218)
.+..++++||+|.+ +|.--++--|+- + +.|+|- .-.+.+|++..|-=+|.+|+-... ++.+.+-++
T Consensus 22 ~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl-~sTFTVRkis~GvGVER~FplhSP~I~kIEVvrr 96 (166)
T 2zjr_M 22 RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGS-RKSFTVRKISFGEGVERVFPFASPLVNQVTIVER 96 (166)
T ss_dssp CCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGG-GCEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred cCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCC-CcEEEEEEecCCeeEEEEEecCCCccceEEEEec
Confidence 56789999999976 454334444442 1 224433 236889999999999999976544 666666665
No 24
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=44.93 E-value=82 Score=24.00 Aligned_cols=45 Identities=7% Similarity=0.104 Sum_probs=36.4
Q ss_pred EEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eCCeEEE
Q 027811 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (218)
Q Consensus 95 r~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dgd~~vF 139 (218)
+..++...+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 51 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 96 (135)
T 1b56_A 51 NLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQ 96 (135)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEEECCCCCeEEEEEEEECCEEEE
Confidence 45666777888999999999999999999888877776 7776543
No 25
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A {Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A* 1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A 1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Probab=43.03 E-value=78 Score=24.02 Aligned_cols=45 Identities=9% Similarity=0.171 Sum_probs=35.5
Q ss_pred EEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eCCeEEE
Q 027811 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (218)
Q Consensus 95 r~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dgd~~vF 139 (218)
+..++...+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 47 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 92 (132)
T 1ifc_A 47 KFTVKESSNFRNIDVVFELGVDFAYSLADGTELTGTWTMEGNKLVG 92 (132)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 35556667788899999999999999999888877776 7776544
No 26
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=42.62 E-value=90 Score=23.70 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=36.4
Q ss_pred EEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eCCeEEE
Q 027811 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (218)
Q Consensus 95 r~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dgd~~vF 139 (218)
.+.++...+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 93 (132)
T 1mdc_A 48 SYSNTSTGGGGAKTVSFKSGVEFDDVIGAGDSVKSMYTVDGNVVTH 93 (132)
T ss_dssp EEEEEEESTTCCEEEEECTTCCEEEEETTTEEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceeEEEEeCCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 35566677788899999999999999999888877776 7776654
No 27
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=42.58 E-value=11 Score=24.37 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=23.9
Q ss_pred CccccccCchhhhhhhhhcCCCCEEEEEEECCE
Q 027811 144 TFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGR 176 (218)
Q Consensus 144 TyEQi~v~~d~lg~~~~fL~eg~~V~V~~~eg~ 176 (218)
.--|+.||+++.. ... |++|+.+.+...+|.
T Consensus 10 ~kgqi~IPk~ir~-~lg-i~~Gd~v~i~~~~~~ 40 (53)
T 2l66_A 10 RNYQVTIPAKVRQ-KFQ-IKEGDLVKVTFDESE 40 (53)
T ss_dssp SSSCBCCCHHHHH-HSC-CCTTCEEEEEECSSS
T ss_pred CCCEEEeCHHHHH-HcC-cCCCCEEEEEEECCE
Confidence 4568999998763 333 799999999887775
No 28
>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} SCOP: b.60.1.2
Probab=42.38 E-value=99 Score=23.46 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=36.8
Q ss_pred EEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eCCeEEE
Q 027811 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (218)
Q Consensus 95 r~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dgd~~vF 139 (218)
+..++...+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1o8v_A 50 KYKMRSESTFKTTECSFKLGEKFKEVTPDSREVASLITVENGVMKH 95 (134)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 46667778888999999999999999999888877776 7776554
No 29
>2kca_A Bacteriophage SPP1 complete nucleotide sequence; beta-barrel, virus; NMR {Bacillus phage SPP1}
Probab=40.86 E-value=86 Score=22.10 Aligned_cols=38 Identities=8% Similarity=0.054 Sum_probs=28.7
Q ss_pred CCCCCccEEEECCeEEEEEEe-EEeeCCCCCeeEEEEEeeC
Q 027811 62 SHVRPGNVIEKSGKMYQVIDA-EHKQRGRGGAMMQMELRDI 101 (218)
Q Consensus 62 ndiRkG~~I~~dG~~y~Vl~~-~h~kpGkG~A~vr~klknL 101 (218)
.+|.++|.|.++|+.|.|..+ ... ..++-++.+.++..
T Consensus 66 ~~i~~~~ri~~~g~~y~I~~v~~~~--~~~~~~l~i~~~~~ 104 (109)
T 2kca_A 66 DRIDKKMRVIYRGKIVTFIGDPVDL--SGLQEITRIKGKED 104 (109)
T ss_dssp CCSSSSEEEEETTEEEEEEEEEEEC--CTTTCEEEEEEECC
T ss_pred CCCCCccEEEECCEEEEEEEeccCc--ccCcEEEEEEEEEc
Confidence 588999999999999999987 543 33445666666654
No 30
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=40.67 E-value=23 Score=24.53 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=24.1
Q ss_pred cccccCchhhhhhhhhcCCCCEEEEEEECCEEE
Q 027811 146 EQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL 178 (218)
Q Consensus 146 EQi~v~~d~lg~~~~fL~eg~~V~V~~~eg~~i 178 (218)
-++.||+++.. ... |.+|.+|.+...+|..+
T Consensus 13 ~~v~iPk~~~~-~lg-l~~gd~v~i~~~~~~ii 43 (82)
T 1mvf_D 13 PAVRIPATLMQ-ALN-LNIDDEVKIDLVDGKLI 43 (82)
T ss_dssp EEEECCHHHHH-HTT-CCTTCBEEEEEETTEEE
T ss_pred cEEEECHHHHH-HcC-CCCCCEEEEEEECCEEE
Confidence 57899998763 333 78999999998888754
No 31
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A
Probab=40.52 E-value=85 Score=23.90 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=34.3
Q ss_pred EEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE--eCCeEEE
Q 027811 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT--ENDTAFV 139 (218)
Q Consensus 96 ~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~--Dgd~~vF 139 (218)
..++...+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~~eg~kLv~ 96 (135)
T 1vyf_A 51 MTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSVVEKNSESKLTQ 96 (135)
T ss_dssp EEEEEECSSCCEEEEECTTCCEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred EEEEEEcCCceEEEEEECCCCEEEECCCCCEEEEEEEEccCCEEEE
Confidence 4456667778889999999999999998887776665 7776554
No 32
>1k0h_A Gpfii; twisted beta-sandwich, viral protein; NMR {Enterobacteria phage lambda} SCOP: b.106.1.2 PDB: 2kx4_A
Probab=40.46 E-value=8.8 Score=29.25 Aligned_cols=32 Identities=13% Similarity=0.260 Sum_probs=24.0
Q ss_pred ecCCCCCccEEEECCeEEEEEEeEEeeC-CCCCeeE
Q 027811 60 NASHVRPGNVIEKSGKMYQVIDAEHKQR-GRGGAMM 94 (218)
Q Consensus 60 ~andiRkG~~I~~dG~~y~Vl~~~h~kp-GkG~A~v 94 (218)
.+..++.|+.|.++|+.|.|...+ | |.|.+.+
T Consensus 71 D~~~~~~gD~v~i~g~~y~V~~v~---PDg~G~~~L 103 (117)
T 1k0h_A 71 EVRQLRRGDTLTIGEENFWVDRVS---PDDGGSCHL 103 (117)
T ss_dssp STTTCCSSCEEEETTTCEEBCCCC---SSSCCCTTC
T ss_pred ccCCCCCCCEEEECCeEEEEeeec---cCCCCeEEE
Confidence 346789999999999999998854 5 3344443
No 33
>3q6l_A Fatty acid-binding protein, adipocyte; lipid chaperone, lipid binding protein; 1.40A {Homo sapiens} PDB: 2q9s_A* 2qm9_A*
Probab=40.12 E-value=1e+02 Score=24.21 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=35.5
Q ss_pred EEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eCCeEEE
Q 027811 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (218)
Q Consensus 95 r~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dgd~~vF 139 (218)
.+.++...+.+..+.+|+-|+.+|....+.+.++-++. ||+.++-
T Consensus 69 ~~tikt~st~kt~~~~F~lGeEfee~t~dGrk~Ks~vt~eg~kLv~ 114 (152)
T 3q6l_A 69 VITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVH 114 (152)
T ss_dssp EEEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEE
Confidence 35566667778889999999999999988888877775 7776643
No 34
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2
Probab=40.01 E-value=1.2e+02 Score=22.99 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=36.3
Q ss_pred EEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eC-CeEEE
Q 027811 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (218)
Q Consensus 95 r~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dg-d~~vF 139 (218)
+..++...+.+..+.+|+-|+.+|.-.++.+.++-++. || +.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~~kLv~ 94 (131)
T 2a0a_A 48 QYIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTVIQKEGDNKFVQ 94 (131)
T ss_dssp CEEEEECCTTSCEEEEECSSCCEEEEETTTEEEEEEEEEETTTEEEE
T ss_pred EEEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEEEeCCCEEEE
Confidence 35666777888899999999999999999888877776 77 66554
No 35
>3p6d_A Fatty acid-binding protein, adipocyte; lipocalin, beta barrel, lipid BI protein; HET: ZGB; 1.06A {Homo sapiens} SCOP: b.60.1.2 PDB: 3p6c_A* 3p6e_A* 3p6f_A* 3p6g_A* 3p6h_A* 3rzy_A 2hnx_A* 3fr4_A* 2nnq_A* 1tow_A* 1tou_A* 3fr2_A* 3fr5_A* 1adl_A* 1alb_A 1lib_A 1lic_A* 1lid_A* 1lie_A* 1lif_A* ...
Probab=39.07 E-value=1.1e+02 Score=23.45 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=35.2
Q ss_pred EEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eCCeEEE
Q 027811 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (218)
Q Consensus 95 r~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dgd~~vF 139 (218)
++.++...+.+..+.+|+-|+.+|....+.+.++-++. ||+.++-
T Consensus 56 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 101 (139)
T 3p6d_A 56 VITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVH 101 (139)
T ss_dssp EEEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEE
Confidence 35566667778889999999999999888888877775 7776643
No 36
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=38.85 E-value=53 Score=23.73 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=31.0
Q ss_pred eeEecCCCCCccEEEECCeEEEEEEeEEee---CCCC--CeeEEEEEeeCCCCCEEEEEec
Q 027811 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQ---RGRG--GAMMQMELRDIDTGNKVSLRFG 112 (218)
Q Consensus 57 ~~i~andiRkG~~I~~dG~~y~Vl~~~h~k---pGkG--~A~vr~klknL~TG~k~e~tf~ 112 (218)
.+..+++|++|+.+.. .++|.+..-.+ ..+| ..+..+.+.| .||...=.-|.
T Consensus 6 ~~~~I~~L~~g~~v~i---~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D-~TG~I~~t~w~ 62 (115)
T 2k50_A 6 RMDTISKLEEGAETPV---TGRVMKISSPRTFTTRKGREGKLANVIIAD-DTGELRAVFWT 62 (115)
T ss_dssp CCCCTTTCCTTCEEEE---EEEEEEECCCEECCCTTSSCCEEEEEEEEE-TTEEEEEEEET
T ss_pred ceEEHHHCCCCCEeEE---EEEEEECCCceEEEcCCCCEEEEEEEEEEe-CCCeEEEEEeC
Confidence 4456889999998755 45555552222 2235 5677788888 67743323343
No 37
>4a60_A Fatty acid-binding protein 9 testis lipid-binding protein, TLBP, testis-type fatty...; transport protein; 1.53A {Homo sapiens} PDB: 3nr3_A*
Probab=37.77 E-value=96 Score=24.44 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=34.5
Q ss_pred EEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eCCeEEE
Q 027811 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (218)
Q Consensus 96 ~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dgd~~vF 139 (218)
+.++...+.+..+..|+-|+.+|....+.+.++-++. ||+.++-
T Consensus 72 ~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~eg~kLv~ 116 (154)
T 4a60_A 72 MTIRTESSFQDTKISFKLGEEFDETTADNRKVKSTITLENGSMIH 116 (154)
T ss_dssp EEEEEEETTEEEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEcCCceEEEEEECCCcEEeEcCCCCEEEEEEEEECCEEEE
Confidence 4555666777888999999999999888888877775 7776643
No 38
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=37.56 E-value=75 Score=24.04 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=35.5
Q ss_pred EEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eCCeEEE
Q 027811 95 QMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (218)
Q Consensus 95 r~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dgd~~vF 139 (218)
+..++...+.+..+..|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~kLv~ 93 (131)
T 1fdq_A 48 KVVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVH 93 (131)
T ss_dssp EEEEEEECSSCBCCEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEecCCccEEEEEeCCCceEEECCCCCEEEEEEEEECCEEEE
Confidence 45556667777888999999999999999888877776 7776554
No 39
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=37.50 E-value=69 Score=24.00 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCccEEEECCeEEEEEEeEEeeCCCCCeeEEEEE
Q 027811 65 RPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMEL 98 (218)
Q Consensus 65 RkG~~I~~dG~~y~Vl~~~h~kpGkG~A~vr~kl 98 (218)
|.|+.+.++|+-|.|..+++. .|...++++-
T Consensus 65 ~r~D~Vv~~Gk~y~Vtr~~~~---ngk~~i~LE~ 95 (102)
T 2pp6_A 65 RRGDRVVLRGSEFTVTRIRRF---NGKPQLTLEE 95 (102)
T ss_dssp CTTCEEEETTEEEEEEEEEEE---TTEEEEEEEE
T ss_pred CCCCEEEEcCcEEEEEEEEEE---CCcEEEEEEe
Confidence 569999999999999999975 3455555543
No 40
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol binding protein II, lipid-binding protein, X-RAY, cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A* 1kqw_A* 1kqx_A
Probab=37.12 E-value=1e+02 Score=23.68 Aligned_cols=45 Identities=13% Similarity=0.216 Sum_probs=35.2
Q ss_pred EEEEeeCCCCCEEEEEecCCCcEEe--eeEEeeEEEEEEE-eCCeEEE
Q 027811 95 QMELRDIDTGNKVSLRFGTEEAVER--VFVEDKSFTCLYT-ENDTAFV 139 (218)
Q Consensus 95 r~klknL~TG~k~e~tf~s~dkvE~--v~le~k~~qyLY~-Dgd~~vF 139 (218)
++.++...+.+..+.+|+-|+.+|. -.++.+.++-++. ||+.++-
T Consensus 52 ~~tikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kLv~ 99 (141)
T 2rcq_A 52 NFKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVC 99 (141)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCeEEeeeecCCCCEEEEEEEEeCCEEEE
Confidence 3455666778889999999999999 8888887776666 7776655
No 41
>3rsw_A Fatty acid-binding protein, heart; lipid carrier, molecular chaperone, heart fatty acid binding type 2 diabetes, atherosclerosis, chaperone; 2.60A {Homo sapiens} PDB: 1g5w_A 1hmr_A* 1hms_A* 1hmt_A* 2hmb_A* 1bwy_A
Probab=37.10 E-value=74 Score=25.25 Aligned_cols=43 Identities=12% Similarity=0.229 Sum_probs=34.5
Q ss_pred EEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eCCeEE
Q 027811 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAF 138 (218)
Q Consensus 96 ~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dgd~~v 138 (218)
+.++...+.+..+.+|+-|+.+|....+.+.++-++. ||+.++
T Consensus 75 ~tikt~St~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~eg~kLv 118 (158)
T 3rsw_A 75 LTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLV 118 (158)
T ss_dssp EEEEEECSSCEECCEEETTBCEEEECSSCCEEEEEEEESSSEEE
T ss_pred EEEEEEccCceEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEE
Confidence 4466677788889999999999999999888877775 666654
No 42
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=36.86 E-value=32 Score=26.68 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=20.3
Q ss_pred CCCCCccEEEECCeEEEEEEeE
Q 027811 62 SHVRPGNVIEKSGKMYQVIDAE 83 (218)
Q Consensus 62 ndiRkG~~I~~dG~~y~Vl~~~ 83 (218)
.+|++|+.+.++++-|.|..+-
T Consensus 53 ~~i~~Gd~l~i~~~~Y~ItaVG 74 (129)
T 2f9h_A 53 VTLAEGDHLKIGDTNYTITKVG 74 (129)
T ss_dssp CCCCTTCEEEETTEEEEEEEEC
T ss_pred CCcCCCCEEEECCEEEEEEEEh
Confidence 5899999999999999998875
No 43
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding protein, BABP, fatty acid-binding PR FABP, cholic acid cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB: 2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Probab=36.28 E-value=65 Score=24.28 Aligned_cols=45 Identities=13% Similarity=0.294 Sum_probs=35.1
Q ss_pred EEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eCCeEEEe
Q 027811 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFVI 140 (218)
Q Consensus 96 ~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dgd~~vFM 140 (218)
..++...+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-.
T Consensus 48 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~kLv~~ 93 (126)
T 2qo4_A 48 FTITSKTPGKTVTNSFTIGKEAEITTMDGKKLKCIVKLDGGKLVCR 93 (126)
T ss_dssp EEEEEEETTEEEEEEEETTBEEEEECTTSCEEEEECEEETTEEEEE
T ss_pred EEEEEEcCCceEEEEeeCCCcEEEECCCCCEeEEEEEEECCEEEEE
Confidence 4455556677888999999999999999888877776 77776553
No 44
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=36.27 E-value=63 Score=24.32 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=34.0
Q ss_pred EEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eCCeEEE
Q 027811 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (218)
Q Consensus 96 ~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dgd~~vF 139 (218)
..++...+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 47 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 91 (125)
T 1p6p_A 47 FVVTSKTPKQTHSNSFTVGKESEITSMDGKKIKVTVQLEGGKLIC 91 (125)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEECTTTSCCEEEEEEECSSEEEE
T ss_pred EEEEEEcCCeEEEEEEECCCcEEEEcCCCCEEEEEEEEECCEEEE
Confidence 4444555677888999999999999999888877776 7776554
No 45
>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} SCOP: b.60.1.2
Probab=35.26 E-value=1.1e+02 Score=23.20 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=35.5
Q ss_pred EEEEeeCCCCCEEEEEecCCCcEEeee--EEeeEEEEEEE-eCCeEEE
Q 027811 95 QMELRDIDTGNKVSLRFGTEEAVERVF--VEDKSFTCLYT-ENDTAFV 139 (218)
Q Consensus 95 r~klknL~TG~k~e~tf~s~dkvE~v~--le~k~~qyLY~-Dgd~~vF 139 (218)
++.++...+.+..+.+|+-|+.+|.-. ++.+.++-++. ||+.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~~~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1ggl_A 48 HMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVC 95 (134)
T ss_dssp EEEEEEECSSCCEEEEEETTSCEEEEETTTTSEEEEEEEEECSSSEEE
T ss_pred EEEEEEEcCCceEEEEeeCCCcEEEEccCCCCcEeeeEEEEECCEEEE
Confidence 345666777888999999999999999 99888877776 6665554
No 46
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=34.74 E-value=1.1e+02 Score=23.29 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=35.8
Q ss_pred EEEEeeCCCCCEEEEEecCCCcEEe--eeEEeeEEEEEEE-eCCeEEE
Q 027811 95 QMELRDIDTGNKVSLRFGTEEAVER--VFVEDKSFTCLYT-ENDTAFV 139 (218)
Q Consensus 95 r~klknL~TG~k~e~tf~s~dkvE~--v~le~k~~qyLY~-Dgd~~vF 139 (218)
...++...+.+..+.+|+-|+.+|. -.++.+.++-++. ||+.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1crb_A 48 HMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKLQC 95 (134)
T ss_dssp EEEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEecCCceEEEEEeCCCeeeeeeecCCCCEEEEEEEEECCEEEE
Confidence 3556677788899999999999999 8888888777665 7776654
No 47
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics, structural genomics consortium, SGC, lipid binding protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Probab=34.30 E-value=94 Score=24.29 Aligned_cols=44 Identities=9% Similarity=0.105 Sum_probs=34.8
Q ss_pred EEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eC-CeEEE
Q 027811 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (218)
Q Consensus 96 ~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dg-d~~vF 139 (218)
+.++...+.+..+.+|+-|+.+|.-.++.+.++-++. || +.++-
T Consensus 70 ~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~egd~kLv~ 115 (149)
T 2f73_A 70 FKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVT 115 (149)
T ss_dssp EEEEEEETTEEEEEEEETTSEEEEECSSSCEEEEECEEETTTEEEE
T ss_pred EEEEEEeCCeEEEEEEeCCCcEEEEcCCCCEEEEEEEEeCCCcEEE
Confidence 4455566677889999999999999999888887776 77 66554
No 48
>1lpj_A Retinol-binding protein IV, cellular; cellular retinol-binding protein, CRBP, vitamin A, ILBPS, transport protein; 2.00A {Homo sapiens} SCOP: b.60.1.2
Probab=32.83 E-value=1.3e+02 Score=22.74 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=34.9
Q ss_pred EEEEeeCCCCCEEEEEecCCCcEEeee--EEeeEEEEEEE-eCCeEEE
Q 027811 95 QMELRDIDTGNKVSLRFGTEEAVERVF--VEDKSFTCLYT-ENDTAFV 139 (218)
Q Consensus 95 r~klknL~TG~k~e~tf~s~dkvE~v~--le~k~~qyLY~-Dgd~~vF 139 (218)
++.++...+.+..+..|+-|+.+|.-. ++.+.++-++. ||+.++-
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeefee~t~~~dgrk~ks~~t~eg~kLv~ 95 (133)
T 1lpj_A 48 SFTIHTNSSLRNYFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTC 95 (133)
T ss_dssp EEEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeCCceeEEEeeCCCceEEEccCCCCCEEEEEEEEECCEEEE
Confidence 345666777888899999999999987 88877776665 7776654
No 49
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A*
Probab=32.56 E-value=1.4e+02 Score=22.50 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=35.0
Q ss_pred EEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eC-CeEEE
Q 027811 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (218)
Q Consensus 96 ~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dg-d~~vF 139 (218)
..++...+.+..+.+|+-|+.+|.-.++.+.++-++. || +.++-
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~~kLv~ 96 (133)
T 1ftp_A 51 FKLTSKTAIKNTEFTFKLGEEFDEETLDGRKVKSTITQDGPNKLVH 96 (133)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEECSSSEEEE
T ss_pred EEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEEEeCCCEEEE
Confidence 4556667788899999999999999999888877776 66 65554
No 50
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=32.13 E-value=1.1e+02 Score=21.76 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=31.0
Q ss_pred eEecCCCCCccEEEECCeEEEEEEeEEeeCCCC--CeeEEEEEeeCCCCCEEEEE-ec
Q 027811 58 KVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRG--GAMMQMELRDIDTGNKVSLR-FG 112 (218)
Q Consensus 58 ~i~andiRkG~~I~~dG~~y~Vl~~~h~kpGkG--~A~vr~klknL~TG~k~e~t-f~ 112 (218)
...+.+|++|+.+.+-|+...+-.......-.| .-...+.+.| .|| .+..+ |.
T Consensus 2 ~~kI~dl~~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~D-eTG-~I~~tlW~ 57 (97)
T 3e0e_A 2 NYKISELMPNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKD-DTG-SIRGTLWN 57 (97)
T ss_dssp EECGGGCCTTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEE-TTE-EEEEEEEG
T ss_pred CeEHHHCCCCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC-CCC-cEEEEEEC
Confidence 356889999988877665554443332211124 3455788888 799 44455 54
No 51
>1eal_A Gastrotropin, ileal lipid binding protein; intracellular lipid binding protein, bIle acid binding, ileal epithelium, fatty acid binding protein; NMR {Sus scrofa} SCOP: b.60.1.2 PDB: 1eio_A* 1o1u_A 1o1v_A*
Probab=31.46 E-value=1.1e+02 Score=22.96 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=34.1
Q ss_pred EEEeeC-CCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eCCeEEE
Q 027811 96 MELRDI-DTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (218)
Q Consensus 96 ~klknL-~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dgd~~vF 139 (218)
..++.. .+.+..+..|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 47 ~~ikt~~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 92 (127)
T 1eal_A 47 FTWSQQYPGGHSITNTFTIGKECDIETIGGKKFKATVQMEGGKVVV 92 (127)
T ss_dssp EEEEEECSSSCEEEEEEESSSCEEEECSSSCEEEECCEECSSEEEE
T ss_pred EEEEEEECCCceEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 444555 5667888999999999999999888877776 6776655
No 52
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=30.34 E-value=64 Score=24.95 Aligned_cols=91 Identities=16% Similarity=0.293 Sum_probs=46.7
Q ss_pred CCCeeEEEEEeeCCCCCEEEEEecCCCcEEee--eEEe-----eEEEEEEEeCCeEEEecCCCccccccCchhhhhhhhh
Q 027811 89 RGGAMMQMELRDIDTGNKVSLRFGTEEAVERV--FVED-----KSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAY 161 (218)
Q Consensus 89 kG~A~vr~klknL~TG~k~e~tf~s~dkvE~v--~le~-----k~~qyLY~Dgd~~vFMD~ETyEQi~v~~d~lg~~~~f 161 (218)
-....+++.+|. .+|+........++.|..+ .|+. .+-|-|+..| -.+-|..+..++.|..+..-....-
T Consensus 16 ~~~~~m~i~Vk~-~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g--~~L~d~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 16 PRGSHMQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG--KQLEDGRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp ---CCEEEEEEE-TTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT--EECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CCCCcEEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECC--ccccccCCHhHcCCcccceeeeeec
Confidence 355678888887 4788888888888886631 1111 1124444454 3344555666665543321111112
Q ss_pred cCCCCEEEEEEECCEEEEEeC
Q 027811 162 LQEGMKVWLQLYDGRALSGSI 182 (218)
Q Consensus 162 L~eg~~V~V~~~eg~~i~V~L 182 (218)
+..|+.+.|...+|+.+.+++
T Consensus 93 ~~gg~~i~Vk~~~g~~~~l~v 113 (172)
T 3u30_A 93 LRGGMQIFVKTLTGKTITLEV 113 (172)
T ss_dssp CCCCEEEEEEESSCCEEEEEE
T ss_pred ccccccceeecccCcceeEEe
Confidence 345555555555555444433
No 53
>2lba_A BABP protein; ileal bIle acid binding protein, lipid binding protein; HET: CHO; NMR {Gallus gallus}
Probab=29.37 E-value=1e+02 Score=23.59 Aligned_cols=45 Identities=9% Similarity=0.169 Sum_probs=35.2
Q ss_pred EEEEeeC-CCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eCCeEEE
Q 027811 95 QMELRDI-DTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (218)
Q Consensus 95 r~klknL-~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dgd~~vF 139 (218)
+..++.. .+.+..+.+|+-|+.+|.-.++.+.++-++. ||+.++-
T Consensus 51 ~~tikt~~s~~kt~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 97 (136)
T 2lba_A 51 DFTWTQHFPGGRTTTNSFTIDKEADMETMGGRKFKATVKMEGGKIVA 97 (136)
T ss_dssp EEEEEEECTTSCCEEEEEETTEEEEEECTTCCEEEEEEEESSSCEEE
T ss_pred EEEEEEEeCCCceEEEEEeCCCcEEEECCCCCEeeEEEEEECCEEEE
Confidence 3445566 6777888999999999999999888887776 6666655
No 54
>2g7b_A Cellular retinoic acid-binding protein 2; crabpii, retinoids, beta barrel, crystallography, X-RAY, high resolution, schiff base; HET: AZE; 1.18A {Homo sapiens} PDB: 3d97_A* 3fa8_A 3i17_B 3fa7_A* 3fa9_A 3d95_A 3cwk_A 3f8a_A* 3fep_A* 3fek_B 3fa6_A 1bm5_A 1xca_A 3fel_A* 3f9d_A* 3cr6_A* 3fen_A 1blr_A 1cbq_A* 1cbs_A* ...
Probab=28.71 E-value=1.2e+02 Score=22.94 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=33.1
Q ss_pred EEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eC-CeEEE
Q 027811 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (218)
Q Consensus 96 ~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dg-d~~vF 139 (218)
+.++...+.+..+.+|+-|+.+|.-.++.+.++-++. || +.++-
T Consensus 50 ~tikt~s~~kt~~~~F~lGeEfee~t~dgrk~ks~~t~egd~kLv~ 95 (137)
T 2g7b_A 50 FYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVC 95 (137)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred EEEEEEECCeEEEEEEecCCceEEECCCCCEEEEEEEEeCCCeEEE
Confidence 4455556677788899999999999999888877665 66 45544
No 55
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=27.64 E-value=2.8e+02 Score=23.42 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=34.0
Q ss_pred cCCCCCccEEEEC----CeEE--EEEEeEE-eeCCCCCeeEEEEEee----CCCCCEEEEEecCC
Q 027811 61 ASHVRPGNVIEKS----GKMY--QVIDAEH-KQRGRGGAMMQMELRD----IDTGNKVSLRFGTE 114 (218)
Q Consensus 61 andiRkG~~I~~d----G~~y--~Vl~~~h-~kpGkG~A~vr~klkn----L~TG~k~e~tf~s~ 114 (218)
+..|+.|+.+.+. |+.+ +|..+.- ..+..+...+++.+.| |.-|...+-++..+
T Consensus 219 ~~~i~~G~~v~v~~~~~~~~~~g~v~~i~~~~d~~~~~~~v~~~~~~~~~~l~~G~~~~v~i~~~ 283 (359)
T 3lnn_A 219 LGHVYVGQSATVKFDAYDDPQPGKVRYVGQILDADTRTTKVRMVFDNPDGRLRPGMFAQATFLSQ 283 (359)
T ss_dssp STTCCTTCEEEEBCSSCSSCEEEEEEECCCCCCTTSCCEEEEEEEECSSCCCCTTCEEEEEEECC
T ss_pred HhhCCCCCeEEEEEcCCCCcEEEEEEEEecccCCCCcEEEEEEEecCCCCCcCCCCEEEEEEecC
Confidence 5778999988763 4443 3333332 2233456677888877 77777777777555
No 56
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=27.53 E-value=1e+02 Score=23.46 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=21.2
Q ss_pred eeeEecCCCCCccEEE-ECC-----eEEEEEEeEEe
Q 027811 56 AVKVNASHVRPGNVIE-KSG-----KMYQVIDAEHK 85 (218)
Q Consensus 56 ~~~i~andiRkG~~I~-~dG-----~~y~Vl~~~h~ 85 (218)
...+.|.+|++|+.|. .+| ++.+|.++..+
T Consensus 84 ~~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~ 119 (145)
T 1at0_A 84 LTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSV 119 (145)
T ss_dssp EEEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEE
T ss_pred EEEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEEE
Confidence 4667899999999885 444 46667766643
No 57
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=25.87 E-value=63 Score=28.24 Aligned_cols=30 Identities=10% Similarity=0.080 Sum_probs=23.2
Q ss_pred EEEEeeCCCCCEEEEEecCCCcEEeeeEEe
Q 027811 95 QMELRDIDTGNKVSLRFGTEEAVERVFVED 124 (218)
Q Consensus 95 r~klknL~TG~k~e~tf~s~dkvE~v~le~ 124 (218)
++++||+.+|+.+.-+..++-.|+.+.+-+
T Consensus 242 ~IRVrNl~SgkiV~G~V~~~G~Vrv~~~~~ 271 (278)
T 3frn_A 242 TVRAMNVESRKYVFGRVERGPVLRILEVVE 271 (278)
T ss_dssp EEEEEC--CCCEEEEEEETTTEEEECC---
T ss_pred EEEEEECCCCCEEEEEEecCCeEEEEEEEc
Confidence 789999999999999999999999887643
No 58
>3vg7_A Fatty acid-binding protein, liver; lfabp, S-SAD, copper kalpha, palmitic acid, lipid binding PR; HET: PLM; 1.44A {Homo sapiens} PDB: 3b2i_A* 3b2j_A* 3b2k_A* 3b2l_A* 3stk_A* 3stm_X* 3stn_A 3vg2_A* 3vg3_A* 3vg4_A* 3vg5_A* 3vg6_A* 3b2h_A* 2py1_A 2l67_A 2l68_A 2lkk_A* 2ju3_A 2ju7_A 2ju8_A* ...
Probab=25.63 E-value=1.3e+02 Score=22.76 Aligned_cols=44 Identities=9% Similarity=0.105 Sum_probs=33.4
Q ss_pred EEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEE-eC-CeEEE
Q 027811 96 MELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT-EN-DTAFV 139 (218)
Q Consensus 96 ~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dg-d~~vF 139 (218)
+.++...+.+..+..|+-|+.+|...++.+.++-++. || +.++-
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~egd~kLv~ 96 (132)
T 3vg7_A 51 FKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVT 96 (132)
T ss_dssp EEEEEEETTEEEEEEEETTSEEEEECTTSCEEEEECEESSTTEEEE
T ss_pred EEEEEEEcCceEEEEEECCCcEEeECCCCCEEEEEEEEecCCeEEE
Confidence 4445555667788999999999999999888887775 66 55544
No 59
>3elx_A Ileal bIle acid-binding protein; ileal bIle acid-bindign protein, zebrafish, cholic acid, LIP binding, transport, lipid binding protein; 1.60A {Danio rerio} SCOP: b.60.1.0 PDB: 3elz_A* 3em0_A*
Probab=25.11 E-value=97 Score=23.85 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=33.9
Q ss_pred EEEeeCCC-CCEEEEEecCCCcEEeeeEEeeEEEEEEE-eCCeEEE
Q 027811 96 MELRDIDT-GNKVSLRFGTEEAVERVFVEDKSFTCLYT-ENDTAFV 139 (218)
Q Consensus 96 ~klknL~T-G~k~e~tf~s~dkvE~v~le~k~~qyLY~-Dgd~~vF 139 (218)
+.++...+ .+..+..|+-|+.+|...++.+.++-++. ||+.++-
T Consensus 51 ~tikt~s~~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 96 (138)
T 3elx_A 51 FTWTQYYPNNHVVTNKFIVGKESDMETVGGKKFKGIVSMEGGKLTI 96 (138)
T ss_dssp EEEEEEEGGGEEEEEEEETTSCEEEECTTSCEEEECCEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEEcCCcEEeecCCCCEEEEEEEEECCEEEE
Confidence 44455556 67788899999999999999888887775 7776654
No 60
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=24.22 E-value=56 Score=26.19 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=27.9
Q ss_pred CCCCCccEEEECC---eEEEEEEeEEeeCC---------CCCeeEEEEE
Q 027811 62 SHVRPGNVIEKSG---KMYQVIDAEHKQRG---------RGGAMMQMEL 98 (218)
Q Consensus 62 ndiRkG~~I~~dG---~~y~Vl~~~h~kpG---------kG~A~vr~kl 98 (218)
=|||+|+.++.|+ -+|.|+.+.+.-++ +|++.|.++-
T Consensus 62 LeLRiGD~VKVd~vpK~~hiVvGf~~~l~~~~~~~~TDi~Gh~tViL~~ 110 (153)
T 2fhd_A 62 FFLKKGDVVQSTRLGKIKHTVVKTFRSTNEQLSLIAVDALNNDMVILAH 110 (153)
T ss_dssp SCCCTTCEEEETTSTTCCEEEEEEECCCSSCCCGGGCCTTCCCEEEEEE
T ss_pred eeeecCCEEEECCCCCccEEEEEecccccccccceeeeecCceEEEEcc
Confidence 5899999999997 48999999854322 3677766555
No 61
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A
Probab=22.81 E-value=98 Score=23.82 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=24.4
Q ss_pred eeEecCCCCCccEEEECCeEEEEEEeE
Q 027811 57 VKVNASHVRPGNVIEKSGKMYQVIDAE 83 (218)
Q Consensus 57 ~~i~andiRkG~~I~~dG~~y~Vl~~~ 83 (218)
-.+...||..|..|.+.|+.|.|++++
T Consensus 82 ~~~~~~Dl~VG~~v~i~gR~f~I~dcD 108 (133)
T 2z14_A 82 QFYTVYHFNVGTEVVFYGRTFKIYDCD 108 (133)
T ss_dssp SBCCGGGCCTTCEEEETTEEEEEEEEC
T ss_pred cccCHHHcccCCEEEEecEEEEEEeCC
Confidence 347799999999999999999999976
No 62
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=22.62 E-value=67 Score=22.38 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=24.0
Q ss_pred CCCccccccCchhhhhhhhhcCCCCEEEEEEE--CCEE
Q 027811 142 SETFEQLEVPLDVFGKAGAYLQEGMKVWLQLY--DGRA 177 (218)
Q Consensus 142 ~ETyEQi~v~~d~lg~~~~fL~eg~~V~V~~~--eg~~ 177 (218)
.||| |+.+|.++. ++.. |++|+++.+... +|+.
T Consensus 22 ~ety-YInIPaeI~-kaLg-Ik~gD~fel~ve~kdgeI 56 (68)
T 3o27_A 22 HTTF-YLLIPKDIA-EALD-IKPDDTFILNMEQKDGDI 56 (68)
T ss_dssp CCCE-EEEECHHHH-HHTT-CCTTCCEEEEEEEETTEE
T ss_pred ceEE-EEeCcHHHH-HHhC-CCCCCEEEEEEecCCCeE
Confidence 3566 788898865 4555 799998888876 6765
No 63
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=21.94 E-value=1e+02 Score=22.67 Aligned_cols=85 Identities=13% Similarity=0.310 Sum_probs=40.2
Q ss_pred EEEEeeCCCCCEEEEEecCCCcEEeee--------EEeeEEEEEEEeCCeEEEecCCCccccccCchhhhhhhhhcCCCC
Q 027811 95 QMELRDIDTGNKVSLRFGTEEAVERVF--------VEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGM 166 (218)
Q Consensus 95 r~klknL~TG~k~e~tf~s~dkvE~v~--------le~k~~qyLY~Dgd~~vFMD~ETyEQi~v~~d~lg~~~~fL~eg~ 166 (218)
++.+|.. +|+..+..+..++.+..+- +.......+| .|. .+-|..+..++.+.....-....-...++
T Consensus 2 ~i~vk~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~-~g~--~L~d~~tL~~~~i~~~~~l~l~~~~~~~~ 77 (152)
T 3b08_A 2 QIFVKTL-TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK--QLEDGRTLSDYNIQKESTLHLVLRLRGGM 77 (152)
T ss_dssp EEEEEET-TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE--ECCTTSBTGGGTCCTTCEEEEEECCTTCE
T ss_pred EEEEEeC-CCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEE-CCe--ECcCcccHHHhccCCCCeeEEEeeccccc
Confidence 4445543 5777778888777765311 1112223333 342 33455566666664322111111123345
Q ss_pred EEEEEEECCEEEEEeCC
Q 027811 167 KVWLQLYDGRALSGSIP 183 (218)
Q Consensus 167 ~V~V~~~eg~~i~V~LP 183 (218)
.+.|...+|+.+.++++
T Consensus 78 ~i~Vk~~~g~~~~~~v~ 94 (152)
T 3b08_A 78 QIFVKTLTGKTITLEVE 94 (152)
T ss_dssp EEEEEESSSCEEEEEEC
T ss_pred ceeeeecCCCEEEEEeC
Confidence 66665555654444433
No 64
>2ciu_A TIM21P, import inner membrane translocase subunit TIM21 mitochondrial; mitochondrial import, mitochondrion, protein transport; 1.6A {Saccharomyces cerevisiae}
Probab=21.70 E-value=2.7e+02 Score=21.28 Aligned_cols=52 Identities=13% Similarity=0.324 Sum_probs=35.6
Q ss_pred ECCeEEEEEEeEEeeCCCCCeeEEEEEee-CCCCCEEEEEecCCCcEEeeeEEeeEEEEEEEeCC---eEEEecCC
Q 027811 72 KSGKMYQVIDAEHKQRGRGGAMMQMELRD-IDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND---TAFVIESE 143 (218)
Q Consensus 72 ~dG~~y~Vl~~~h~kpGkG~A~vr~klkn-L~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~Dgd---~~vFMD~E 143 (218)
.||.-+..+.|.-.-| ++.|.|.++++. -.+|+ =++.|||.|=. -++++|++
T Consensus 66 ~dG~eH~rm~F~VeG~-~~~G~V~le~~k~~~~~~-------------------~ef~Yl~vDV~g~~Ri~Le~p~ 121 (127)
T 2ciu_A 66 KEGRTHHYMRFHVESK-KKIALVHLEAKESKQNYQ-------------------PDFINMYVDVPGEKRYYLIKPK 121 (127)
T ss_dssp TTSCEEEEEEEEEECS-SCEEEEEEEEECCSSCSS-------------------CEEEEEEEECTTSCCEEEECCS
T ss_pred CCCCEEEEEEEEEEcC-CCcEEEEEEEEecCCCCc-------------------eEEEEEEEEeCCCceEEEECCC
Confidence 3788888888876555 689999999976 33332 25677777643 36777764
No 65
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=21.47 E-value=82 Score=23.13 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=18.2
Q ss_pred ceeeee---eeeEecCCCCCccEEEEC
Q 027811 50 SATQQR---AVKVNASHVRPGNVIEKS 73 (218)
Q Consensus 50 ~~~~~R---~~~i~andiRkG~~I~~d 73 (218)
.++..| ...+.+.+|.+|++|.+.
T Consensus 13 ~a~v~r~g~~~~i~~~~l~~GDiv~v~ 39 (113)
T 2hc8_A 13 TAVVIRDGKEIAVPVEEVAVGDIVIVR 39 (113)
T ss_dssp EEEEEETTEEEEEEGGGCCTTCEEEEC
T ss_pred EEEEEECCEEEEEEHHHCCCCCEEEEC
Confidence 455445 467899999999999874
No 66
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=20.74 E-value=1.8e+02 Score=26.15 Aligned_cols=51 Identities=12% Similarity=0.248 Sum_probs=37.6
Q ss_pred CCccEEEECCeEEEEEEeEEeeCCCCCeeEEEEEeeCCCCCEEEEEecCCCcEEeeeE
Q 027811 65 RPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFV 122 (218)
Q Consensus 65 RkG~~I~~dG~~y~Vl~~~h~kpGkG~A~vr~klknL~TG~k~e~tf~s~dkvE~v~l 122 (218)
..|+.+.+||+.+-++++. +| .+|+++.|...-......+..+..+..+..
T Consensus 180 ~~~d~~liNG~~~p~~~v~-----~g--~~RlRliNa~~~~~~~~~i~dg~~~~vi~~ 230 (451)
T 2uxt_A 180 FVGDTLLVNGVQSPYVEVS-----RG--WVRLRLLNASNSRRYQLQMNDGRPLHVISG 230 (451)
T ss_dssp CCCSEEEETTEESCEEEEC-----SS--EEEEEEEECCSSCCEEEEETTSCCEEEEEC
T ss_pred CcCCEEEECCcccceEEec-----CC--EEEEEEEccCCceeEEEEECCCCeEEEEEe
Confidence 4589999999988766543 34 799999999888777777754666655443
No 67
>2kl5_A Uncharacterized protein YUTD; structural genomics, protein northeast structural genom consortium (NESG), target SR232, PSI-2; NMR {Bacillus subtilis}
Probab=20.54 E-value=71 Score=24.24 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=21.3
Q ss_pred eEecCCCCCccEEEECCeEEEEEEeE
Q 027811 58 KVNASHVRPGNVIEKSGKMYQVIDAE 83 (218)
Q Consensus 58 ~i~andiRkG~~I~~dG~~y~Vl~~~ 83 (218)
||..++-|-+..|.++|..|++++..
T Consensus 1 ~~~~~~~~~~~~i~i~~~~yelv~n~ 26 (110)
T 2kl5_A 1 MIGMSEKRGEIMILIQNAEFELVHNF 26 (110)
T ss_dssp CTTTTCCCCSCEEEETTEEEEEEEEE
T ss_pred CCccccccCCCEEEECCEEEEEEehh
Confidence 45667777777899999999999876
No 68
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=20.31 E-value=1.7e+02 Score=22.25 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=30.8
Q ss_pred eeeEecCCCCCccEEEE---CCeE--EEEEEeEEeeCCCCCeeEEEEEe
Q 027811 56 AVKVNASHVRPGNVIEK---SGKM--YQVIDAEHKQRGRGGAMMQMELR 99 (218)
Q Consensus 56 ~~~i~andiRkG~~I~~---dG~~--y~Vl~~~h~kpGkG~A~vr~klk 99 (218)
+..+.+.+|+.|+.+.- +|++ -.|+.+-|..|..-..|++++..
T Consensus 13 G~~k~i~eL~~GD~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~ 61 (145)
T 1at0_A 13 GVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTD 61 (145)
T ss_dssp SCEEEGGGCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEET
T ss_pred CCEeEHHHcCCCCEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEEC
Confidence 45578899999998853 5753 57787877766444567777653
No 69
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=20.09 E-value=1.6e+02 Score=20.58 Aligned_cols=33 Identities=9% Similarity=0.154 Sum_probs=24.2
Q ss_pred EecCCCCCccEEEE-----CCeEEEEEEeEEeeCCCCC
Q 027811 59 VNASHVRPGNVIEK-----SGKMYQVIDAEHKQRGRGG 91 (218)
Q Consensus 59 i~andiRkG~~I~~-----dG~~y~Vl~~~h~kpGkG~ 91 (218)
...+.|+.|+.|.. +|.-|+|.+++...|++|+
T Consensus 43 ~~l~~lk~Gd~V~F~~~~~~~g~~~it~i~~~~~~~~~ 80 (82)
T 2l55_A 43 GLPQGLKAGDRVAFSFRLDPHGMATLVTVAPQVQTAGA 80 (82)
T ss_dssp CCCSSCSTTCEEEEEEEEETTTEEEEEEEEECCSSCCC
T ss_pred hHhhcCCCCCEEEEEEEECCCCeEEEEEEEecCCCCCC
Confidence 34688999999864 4426999999877776653
Done!