Query 027812
Match_columns 218
No_of_seqs 129 out of 1036
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 02:46:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1div_A Ribosomal protein L9; r 100.0 4.5E-49 1.5E-53 321.4 15.6 147 42-217 1-147 (149)
2 1nkw_F 50S ribosomal protein L 100.0 1.1E-47 3.8E-52 312.2 16.9 144 42-217 1-144 (146)
3 3v2d_I 50S ribosomal protein L 100.0 2.9E-48 1E-52 316.2 12.5 146 42-217 1-146 (148)
4 3r8s_H 50S ribosomal protein L 100.0 3.6E-48 1.2E-52 316.1 11.8 146 42-217 1-148 (149)
5 3bbo_J Ribosomal protein L9; l 100.0 4.4E-49 1.5E-53 334.0 1.8 158 30-217 38-196 (197)
6 2hba_A BL17, 50S ribosomal pro 99.9 9.3E-27 3.2E-31 158.4 3.4 51 42-92 1-51 (52)
7 3ghd_A A cystathionine beta-sy 31.0 25 0.00086 23.4 2.0 23 150-173 32-54 (70)
8 1dv5_A APO-DCP, APO-D-alanyl c 30.1 22 0.00076 24.1 1.6 34 154-188 37-70 (80)
9 2amw_A Hypothetical protein NE 27.6 21 0.00073 24.1 1.2 33 155-188 39-71 (83)
10 1q1v_A DEK protein; winged-hel 27.0 25 0.00085 24.3 1.4 24 154-177 31-55 (70)
11 3gby_A Uncharacterized protein 26.0 35 0.0012 24.2 2.2 18 150-167 109-126 (128)
12 2ef7_A Hypothetical protein ST 25.1 39 0.0013 23.9 2.3 19 150-168 108-126 (133)
13 3kpb_A Uncharacterized protein 25.1 30 0.001 24.1 1.6 18 150-167 103-120 (122)
14 3k6e_A CBS domain protein; str 24.6 42 0.0014 25.3 2.5 19 150-168 125-143 (156)
15 2lki_A Putative uncharacterize 23.9 20 0.00069 26.1 0.5 33 155-188 61-93 (105)
16 3lqn_A CBS domain protein; csg 23.9 43 0.0015 24.3 2.4 19 150-168 126-144 (150)
17 2yzi_A Hypothetical protein PH 23.0 41 0.0014 24.0 2.1 20 150-169 112-131 (138)
18 3i8n_A Uncharacterized protein 20.5 46 0.0016 23.6 1.9 17 150-166 112-128 (130)
19 2pfi_A Chloride channel protei 20.5 67 0.0023 23.4 2.9 21 151-171 131-151 (164)
20 3jtf_A Magnesium and cobalt ef 20.3 45 0.0015 23.7 1.8 18 150-167 109-126 (129)
21 2nyc_A Nuclear protein SNF4; b 20.1 53 0.0018 23.3 2.1 18 150-167 124-141 (144)
No 1
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Probab=100.00 E-value=4.5e-49 Score=321.36 Aligned_cols=147 Identities=22% Similarity=0.325 Sum_probs=134.5
Q ss_pred eEEEEeccccccCCCCceEEeCCCcccccccccCccccchHHHHHHHHHHHHhcCCchHHHHHHHhhhhhhhHHHHHHHH
Q 027812 42 LEVILTTKVDKLGKAGETVKVAPGYFRNHLMPKLLAVPNIEKFAHLIREQRRICQPVEEEEVKVIRKSEDNMSREFEKAA 121 (218)
Q Consensus 42 mkVILlkdV~~LGk~GdiV~Vk~GYARNfLiP~glAv~at~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~~ 121 (218)
|+|||++||+|||+.||+|+|+||||||||||+|+|++||++|++.++.+++.. ++..++.+.+|++++
T Consensus 1 MkVILl~dV~~LG~~GdvV~Vk~GYaRNfLiP~glA~~AT~~n~~~~e~~~~~~-----------~~~~~~~~~~A~~~a 69 (149)
T 1div_A 1 MKVIFLKDVKGKGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQKQKE-----------QRQAAEELANAKKLK 69 (149)
T ss_dssp CEEEECSBSSSBGGGTEEEECCTTHHHHTTTTTTSEEECCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred CEEEEcccccccCCCCCEEEEcCCceeeeeccCCceecCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999988887652 223456688899999
Q ss_pred HHHhcCceEEEEeccccccccccCCCCCceeeeccCHHHHHHHHHhhcCCcccCCcccCCCCCccceeEEEEEEcCCCCC
Q 027812 122 RRLENARLVLRRFPNIEKLRSRESKDVPIELRSPVTKEELVAEVSRQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAIP 201 (218)
Q Consensus 122 ~kL~~~~l~~~~~~~~~~~~~k~g~~~~~klfGSVT~~dI~~~L~~q~gi~Idk~~I~l~~pIk~~G~y~V~I~L~~~v~ 201 (218)
++|++..++|.++++++| +||||||++||+++|.+++|++||++.|.||+||+++|+|+|+|+||++|
T Consensus 70 ~~L~~~~v~i~~k~g~~g-----------klfGSVt~~dIa~al~~~~g~~idk~~I~l~~~Ik~~G~~~v~vkLh~~V- 137 (149)
T 1div_A 70 EQLEKLTVTIPAKAGEGG-----------RLFGSITSKQIAESLQAQHGLKLDKRKIELADAIRALGYTNVPVKLHPEV- 137 (149)
T ss_dssp HHHTTCCEEEEECBCGGG-----------EEEEEECHHHHHHHHHHHHCCCCCGGGBCCCSCEEESEEEEEEEEEETTE-
T ss_pred HHHcCCeEEEEEEeCCCC-----------cEEeecCHHHHHHHHHHhhCCeechheEECCCCccccEEEEEEEEECCCC-
Confidence 999999999988875543 99999999999999999899999999999999999999999999999988
Q ss_pred CCCceEEEEEEEEEEe
Q 027812 202 LPEGKVQWTLNVKVRG 217 (218)
Q Consensus 202 ~p~~~~~~~l~V~V~~ 217 (218)
+++++|+|..
T Consensus 138 ------~a~i~v~V~~ 147 (149)
T 1div_A 138 ------TATLKVHVTE 147 (149)
T ss_dssp ------EEEEEEEEEE
T ss_pred ------EEEEEEEEEe
Confidence 7999999975
No 2
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Probab=100.00 E-value=1.1e-47 Score=312.21 Aligned_cols=144 Identities=25% Similarity=0.416 Sum_probs=131.4
Q ss_pred eEEEEeccccccCCCCceEEeCCCcccccccccCccccchHHHHHHHHHHHHhcCCchHHHHHHHhhhhhhhHHHHHHHH
Q 027812 42 LEVILTTKVDKLGKAGETVKVAPGYFRNHLMPKLLAVPNIEKFAHLIREQRRICQPVEEEEVKVIRKSEDNMSREFEKAA 121 (218)
Q Consensus 42 mkVILlkdV~~LGk~GdiV~Vk~GYARNfLiP~glAv~at~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~~ 121 (218)
|+|||++| +|||+.||+|+|+||||||||||+|+|++||++|++.++.+++..+ +..++.+.+|++++
T Consensus 1 MkVIL~~d-~~LG~~GdvV~Vk~GYaRNfLiP~glA~~AT~~n~~~~e~~~~~~~-----------~~~~~~~~~A~~~a 68 (146)
T 1nkw_F 1 MQVILLEP-SRLGKTGEVVSVKDGYARNWLIPQGLAVSATRTNMKTLEAQLRSIE-----------KRQAQEKAVAEDLA 68 (146)
T ss_pred CeEEEeec-CCCCCCCCEEEEcCcceehhcccCCceecCCHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 89999999 9999999999999999999999999999999999999888876522 23456678999999
Q ss_pred HHHhcCceEEEEeccccccccccCCCCCceeeeccCHHHHHHHHHhhcCCcccCCcccCCCCCccceeEEEEEEcCCCCC
Q 027812 122 RRLENARLVLRRFPNIEKLRSRESKDVPIELRSPVTKEELVAEVSRQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAIP 201 (218)
Q Consensus 122 ~kL~~~~l~~~~~~~~~~~~~k~g~~~~~klfGSVT~~dI~~~L~~q~gi~Idk~~I~l~~pIk~~G~y~V~I~L~~~v~ 201 (218)
++|++..++|.++++ + |+||||||++||+++|.++ |++||+++|.||+||+++|+|+|+|+||++|
T Consensus 69 ~~L~~~~v~i~~k~g-~-----------gklfGSVt~~dIa~al~~~-g~~idk~~I~l~~~Ik~~G~~~v~vkLh~~V- 134 (146)
T 1nkw_F 69 SRLNGVAVELSVRAG-E-----------GKIYGAVTHQDVANSLDQL-GFDVDRRKIDMPKTVKEVGEYDIAYRAHPEV- 134 (146)
T ss_pred HHhcCCEEEEEEEcC-C-----------CceeeccCHHHHHHHHHHc-CCeechheEECCCcccccEEEEEEEEECCCC-
Confidence 999999999888875 3 3999999999999999988 9999999999999999999999999999998
Q ss_pred CCCceEEEEEEEEEEe
Q 027812 202 LPEGKVQWTLNVKVRG 217 (218)
Q Consensus 202 ~p~~~~~~~l~V~V~~ 217 (218)
+++++|+|..
T Consensus 135 ------~a~i~v~V~~ 144 (146)
T 1nkw_F 135 ------TIPMKLVVHA 144 (146)
T ss_pred ------EEEEEEEEEe
Confidence 7999999975
No 3
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Probab=100.00 E-value=2.9e-48 Score=316.25 Aligned_cols=146 Identities=29% Similarity=0.459 Sum_probs=131.9
Q ss_pred eEEEEeccccccCCCCceEEeCCCcccccccccCccccchHHHHHHHHHHHHhcCCchHHHHHHHhhhhhhhHHHHHHHH
Q 027812 42 LEVILTTKVDKLGKAGETVKVAPGYFRNHLMPKLLAVPNIEKFAHLIREQRRICQPVEEEEVKVIRKSEDNMSREFEKAA 121 (218)
Q Consensus 42 mkVILlkdV~~LGk~GdiV~Vk~GYARNfLiP~glAv~at~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~~ 121 (218)
|+|||++||+|||+.||+|+|+||||||||||+|+|++||++|++.++.+++.. ++..++.+.+|++++
T Consensus 1 MkVILl~dV~~LG~~GdvV~Vk~GYaRNfLiP~g~A~~AT~~n~k~~e~~~~~~-----------~~~~~~~~~~A~~~~ 69 (148)
T 3v2d_I 1 MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARIRAQ-----------AKRLAERKAEAERLK 69 (148)
T ss_dssp CEEEESSCBTTTBSTTCEEECCHHHHHHTTGGGTSEEECCHHHHHHHHHHHHTH-----------HHHHHHHHHHHHHHH
T ss_pred CeEEEccccccCCCCccEEEEcCCceehhhcccCchhhcCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998887642 223456688899999
Q ss_pred HHHhcCceEEEEeccccccccccCCCCCceeeeccCHHHHHHHHHhhcCCcccCCcccCCCCCccceeEEEEEEcCCCCC
Q 027812 122 RRLENARLVLRRFPNIEKLRSRESKDVPIELRSPVTKEELVAEVSRQLSISIEPENLHLPSPLSAFGEYEVPMRLPKAIP 201 (218)
Q Consensus 122 ~kL~~~~l~~~~~~~~~~~~~k~g~~~~~klfGSVT~~dI~~~L~~q~gi~Idk~~I~l~~pIk~~G~y~V~I~L~~~v~ 201 (218)
++|++..++|.+++ |+ + +||||||++||+++|.+++|++||++.|.||+|||++|+|+|+|+||++|
T Consensus 70 ~~L~~~~v~i~~ka---------g~--~-kLfGSVt~~dIa~al~~~~g~~idk~~I~l~~pIk~~G~~~v~v~Lh~~V- 136 (148)
T 3v2d_I 70 EILENLTLTIPVRA---------GE--T-KIYGSVTAKDIAEALSRQHGVTIDPKRLALEKPIKELGEYVLTYKPHPEV- 136 (148)
T ss_dssp HHSSSCCEEEECCB---------SS--S-SBSSCBCHHHHHHHHTTTTCCCCCTTSSCCSSCBCSCEEEEEECCSBTTB-
T ss_pred HHHcCCEEEEEEEc---------CC--C-ccccccCHHHHHHHHHHhcCCCcchheEEcCchhhceEEEEEEEEECCCc-
Confidence 99999988887776 32 3 99999999999999998889999999999999999999999999999998
Q ss_pred CCCceEEEEEEEEEEe
Q 027812 202 LPEGKVQWTLNVKVRG 217 (218)
Q Consensus 202 ~p~~~~~~~l~V~V~~ 217 (218)
+++++|+|..
T Consensus 137 ------~a~i~v~V~~ 146 (148)
T 3v2d_I 137 ------PIQLKVSVVA 146 (148)
T ss_dssp ------CCEEEEEEEC
T ss_pred ------EEEEEEEEEe
Confidence 6999999874
No 4
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Probab=100.00 E-value=3.6e-48 Score=316.07 Aligned_cols=146 Identities=23% Similarity=0.348 Sum_probs=131.4
Q ss_pred eEEEEeccccccCCCCceEEeCCCcccccccccCccccchHHHHHHHHHHHHhcCCchHHHHHHHhhhhhhhHHHHHHHH
Q 027812 42 LEVILTTKVDKLGKAGETVKVAPGYFRNHLMPKLLAVPNIEKFAHLIREQRRICQPVEEEEVKVIRKSEDNMSREFEKAA 121 (218)
Q Consensus 42 mkVILlkdV~~LGk~GdiV~Vk~GYARNfLiP~glAv~at~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~~ 121 (218)
|+|||++||+|||+.||+|+|+||||||||||+|+|++||++|++.++.+++.. ++.+++.+.+|++++
T Consensus 1 MkVIL~~dV~~LG~~GdvV~Vk~GYaRNfLiP~glA~~AT~~n~k~~e~~~~~~-----------~~~~~~~~~~A~~~~ 69 (149)
T 3r8s_H 1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAEL-----------EAKLAEVLAAANARA 69 (149)
T ss_dssp CCCEESSCCTTTCCSSCBCCCCHHHHTTTTSSSSSEECCCSHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred CeEEEecccccCCCCCCEEEEcCcceehhhccCCceeeCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999988877642 223456678899999
Q ss_pred HHHhcC-ceEEEEeccccccccccCCCCCceeeeccCHHHHHHHHHhhcCCcccCCcccCCC-CCccceeEEEEEEcCCC
Q 027812 122 RRLENA-RLVLRRFPNIEKLRSRESKDVPIELRSPVTKEELVAEVSRQLSISIEPENLHLPS-PLSAFGEYEVPMRLPKA 199 (218)
Q Consensus 122 ~kL~~~-~l~~~~~~~~~~~~~k~g~~~~~klfGSVT~~dI~~~L~~q~gi~Idk~~I~l~~-pIk~~G~y~V~I~L~~~ 199 (218)
++|++. .++|.++++++ |+||||||++||+++|.++ |++||++.|.||+ |||++|+|+|+|+||++
T Consensus 70 ~~L~~~~~v~i~~k~g~~-----------gklfGSVt~~dIa~al~~~-g~~idk~~I~l~~~pIk~~G~~~v~v~Lh~~ 137 (149)
T 3r8s_H 70 EKINALETVTIASKAGDE-----------GKLFGSIGTRDIADAVTAA-GVEVAKSEVRLPNGVLRTTGEHEVSFQVHSE 137 (149)
T ss_dssp HHHHTTCCEEEEECBCTT-----------SEEEEEECHHHHHHHHHTT-SCCCCTTSEECSSCCEEESEEEEEEECSSSS
T ss_pred HHhcCCcEEEEEEEcCCC-----------CceEcccCHHHHHHHHHHc-CCceehheEEcCCccccceEEEEEEEEECCC
Confidence 999997 89988887543 3999999999999999876 9999999999996 99999999999999999
Q ss_pred CCCCCceEEEEEEEEEEe
Q 027812 200 IPLPEGKVQWTLNVKVRG 217 (218)
Q Consensus 200 v~~p~~~~~~~l~V~V~~ 217 (218)
| +++++|+|..
T Consensus 138 V-------~a~i~v~V~~ 148 (149)
T 3r8s_H 138 V-------FAKVIVNVVA 148 (149)
T ss_dssp C-------CCCEEEEEEE
T ss_pred C-------EEEEEEEEEE
Confidence 8 6999999874
No 5
>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=4.4e-49 Score=333.97 Aligned_cols=158 Identities=22% Similarity=0.313 Sum_probs=129.4
Q ss_pred eeEeeccccccceEEEEeccccccCCCCceEEeCCCcccccccccCccccchHHHHHHHHHHHHhcCCchHHHHHHHhhh
Q 027812 30 LLYSCQGVRYRRLEVILTTKVDKLGKAGETVKVAPGYFRNHLMPKLLAVPNIEKFAHLIREQRRICQPVEEEEVKVIRKS 109 (218)
Q Consensus 30 l~~~~~~~~~kkmkVILlkdV~~LGk~GdiV~Vk~GYARNfLiP~glAv~at~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 109 (218)
+++.++++++++|+|||++||+|||++||+|+|++|||||||||+|+|++||++|++.++.+++.. ++.
T Consensus 38 lvv~~~k~~~k~MkVILledV~~LGk~GdvV~Vk~GYARNfLiP~glAv~AT~~nlk~~e~~~~~~-----------e~~ 106 (197)
T 3bbo_J 38 FEVVSQKKAKKLRKVILKEDVTDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERI-----------EAE 106 (197)
T ss_dssp ------------CCCCCCSCSSSSCSSCCCSCCCSSSCCCCCTTTTCCCCCCHHHHHHHHTTTHHH-----------HGG
T ss_pred EEEEeccccCCceEEEEcccccccCCCCCEEEEcCcceeehcccCCceecCCHHHHHHHHHhHHHH-----------HHH
Confidence 899999999999999999999999999999999999999999999999999999999887766542 223
Q ss_pred hhhhHHHHHHHHHHHhcC-ceEEEEeccccccccccCCCCCceeeeccCHHHHHHHHHhhcCCcccCCcccCCCCCccce
Q 027812 110 EDNMSREFEKAARRLENA-RLVLRRFPNIEKLRSRESKDVPIELRSPVTKEELVAEVSRQLSISIEPENLHLPSPLSAFG 188 (218)
Q Consensus 110 ~~~~~~~a~~~~~kL~~~-~l~~~~~~~~~~~~~k~g~~~~~klfGSVT~~dI~~~L~~q~gi~Idk~~I~l~~pIk~~G 188 (218)
+++.+.+|++++++|++. .++|.+++ |++ |+||||||++||+++|.+++|++||++.|.||+ ||++|
T Consensus 107 ~~~~~~~A~~la~~L~~~~~v~i~~ka---------Ge~--GkLFGSVT~~dIa~al~~~~Gi~Idk~~I~L~~-IK~lG 174 (197)
T 3bbo_J 107 KQRVKEEAQQLAMVFQTVGAFKVKRKG---------GKG--KLIFGSVTAQDLVDIIKSQLQKDIDKRLVSLPE-IRETG 174 (197)
T ss_dssp GTTTTHHHHTHHHHSSSCCCCBCCCCB---------CTT--SSBSSCCSSHHHHGGGTSSSSCCCCSTTCCSCC-CSSSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEEEe---------CCC--CcEecccCHHHHHHHHHHhhCCeeeeeEEEecc-ccceE
Confidence 456688899999999998 57766555 443 399999999999999998899999999999985 99999
Q ss_pred eEEEEEEcCCCCCCCCceEEEEEEEEEEe
Q 027812 189 EYEVPMRLPKAIPLPEGKVQWTLNVKVRG 217 (218)
Q Consensus 189 ~y~V~I~L~~~v~~p~~~~~~~l~V~V~~ 217 (218)
+|+|+|+||++| +++|+|+|..
T Consensus 175 ~y~V~VkLh~eV-------~a~i~V~V~~ 196 (197)
T 3bbo_J 175 EYIAELKLHPDV-------TARVKINVFA 196 (197)
T ss_dssp CEEECCCCBTTB-------CCCEEEBCCC
T ss_pred EEEEEEEECCCc-------EEEEEEEEEe
Confidence 999999999998 6999998864
No 6
>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A
Probab=99.93 E-value=9.3e-27 Score=158.36 Aligned_cols=51 Identities=31% Similarity=0.462 Sum_probs=48.3
Q ss_pred eEEEEeccccccCCCCceEEeCCCcccccccccCccccchHHHHHHHHHHH
Q 027812 42 LEVILTTKVDKLGKAGETVKVAPGYFRNHLMPKLLAVPNIEKFAHLIREQR 92 (218)
Q Consensus 42 mkVILlkdV~~LGk~GdiV~Vk~GYARNfLiP~glAv~at~~~~~~~~~~~ 92 (218)
|+|||++||+|||++||+|+|++|||||||||+|+|++||++|++.++.++
T Consensus 1 MkVIL~~dV~~lG~~Gdvv~V~~GYaRN~LiP~g~A~~AT~~n~~~~~~~~ 51 (52)
T 2hba_A 1 MKVIFLKDVKGMGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQK 51 (52)
T ss_dssp CEEEESSCBTTTBCTTCEEECCHHHHHHTTTTTTSEEECCHHHHHHHHHHH
T ss_pred CEEEEcccccccCcCCCEEEEcCCceehhhccCCceeeCCHHHHHHHHHhh
Confidence 899999999999999999999999999999999999999999998776654
No 7
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=31.02 E-value=25 Score=23.45 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=17.8
Q ss_pred ceeeeccCHHHHHHHHHhhcCCcc
Q 027812 150 IELRSPVTKEELVAEVSRQLSISI 173 (218)
Q Consensus 150 ~klfGSVT~~dI~~~L~~q~gi~I 173 (218)
|++.|.||..||...+..+ |.+.
T Consensus 32 ~~lvGIvT~~Di~~~~~~~-~~~~ 54 (70)
T 3ghd_A 32 DEILGVVTERDILDKVVAK-GKNP 54 (70)
T ss_dssp TEEEEEEEHHHHHHHTTTT-TCCG
T ss_pred CEEEEEEEHHHHHHHHHhc-CCCc
Confidence 3899999999999877643 5443
No 8
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=30.12 E-value=22 Score=24.08 Aligned_cols=34 Identities=9% Similarity=0.140 Sum_probs=26.8
Q ss_pred eccCHHHHHHHHHhhcCCcccCCcccCCCCCccce
Q 027812 154 SPVTKEELVAEVSRQLSISIEPENLHLPSPLSAFG 188 (218)
Q Consensus 154 GSVT~~dI~~~L~~q~gi~Idk~~I~l~~pIk~~G 188 (218)
=|+..-+++-+|.+.||++|+...+... .++++|
T Consensus 37 DSl~~velv~~lE~~fgi~i~~~~~~~~-~~~Tv~ 70 (80)
T 1dv5_A 37 DSMGTVQLLLELQSQFGVDAPVSEFDRK-EWDTPN 70 (80)
T ss_dssp CSHHHHHHHHHHTTTSCCCCCCSSCCTT-TTTSHH
T ss_pred ChHHHHHHHHHHHHHhCCcCCHHHcCHH-hcCCHH
Confidence 4888999999999999999998876433 366655
No 9
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=27.56 E-value=21 Score=24.13 Aligned_cols=33 Identities=6% Similarity=0.337 Sum_probs=25.7
Q ss_pred ccCHHHHHHHHHhhcCCcccCCcccCCCCCccce
Q 027812 155 PVTKEELVAEVSRQLSISIEPENLHLPSPLSAFG 188 (218)
Q Consensus 155 SVT~~dI~~~L~~q~gi~Idk~~I~l~~pIk~~G 188 (218)
|+..-+++-.|.+++|++|+...+... .++++|
T Consensus 39 Sl~~~elv~~lE~~fgi~i~~~~l~~~-~~~Tv~ 71 (83)
T 2amw_A 39 SMAVVNVITALEEYFDFSVDDDEISAQ-TFETLG 71 (83)
T ss_dssp HHHHHHHHHHHHHHTTCCCCTTTCCGG-GSSSHH
T ss_pred HHHHHHHHHHHHHHhCCeeCHHhhhHH-hcCCHH
Confidence 788899999999999999998876432 255554
No 10
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=27.01 E-value=25 Score=24.27 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=20.7
Q ss_pred eccCHHHHHHHHHhhc-CCcccCCc
Q 027812 154 SPVTKEELVAEVSRQL-SISIEPEN 177 (218)
Q Consensus 154 GSVT~~dI~~~L~~q~-gi~Idk~~ 177 (218)
-+||.+.|...|.+++ |+++..++
T Consensus 31 ~tvT~K~VR~~Le~~~pg~dLs~kK 55 (70)
T 1q1v_A 31 EEVTMKQICKKVYENYPTYDLTERK 55 (70)
T ss_dssp GGCCHHHHHHHHHHHCSSSCCSHHH
T ss_pred HHHhHHHHHHHHHHHccCCCChHHH
Confidence 4799999999999999 99887544
No 11
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=25.95 E-value=35 Score=24.19 Aligned_cols=18 Identities=6% Similarity=0.161 Sum_probs=16.2
Q ss_pred ceeeeccCHHHHHHHHHh
Q 027812 150 IELRSPVTKEELVAEVSR 167 (218)
Q Consensus 150 ~klfGSVT~~dI~~~L~~ 167 (218)
|++.|.||..||.+++.+
T Consensus 109 g~~~Giit~~dll~~l~~ 126 (128)
T 3gby_A 109 GRYEGVVSRKRILGFLAE 126 (128)
T ss_dssp CBEEEEEEHHHHHHHHHT
T ss_pred CCEEEEEEHHHHHHHHHh
Confidence 489999999999999975
No 12
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=25.14 E-value=39 Score=23.92 Aligned_cols=19 Identities=5% Similarity=0.195 Sum_probs=16.9
Q ss_pred ceeeeccCHHHHHHHHHhh
Q 027812 150 IELRSPVTKEELVAEVSRQ 168 (218)
Q Consensus 150 ~klfGSVT~~dI~~~L~~q 168 (218)
|++.|.||..||.+.+.+.
T Consensus 108 g~~~Giit~~dll~~~~~~ 126 (133)
T 2ef7_A 108 GNLKGIISIRDITRAIDDM 126 (133)
T ss_dssp SCEEEEEEHHHHHHHHHHH
T ss_pred CeEEEEEEHHHHHHHHHHH
Confidence 3899999999999999865
No 13
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=25.10 E-value=30 Score=24.08 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=15.5
Q ss_pred ceeeeccCHHHHHHHHHh
Q 027812 150 IELRSPVTKEELVAEVSR 167 (218)
Q Consensus 150 ~klfGSVT~~dI~~~L~~ 167 (218)
|++.|.||..||.+++.+
T Consensus 103 g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 103 RRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp CBEEEEEEHHHHHHHHC-
T ss_pred CCEEEEEeHHHHHHHhhc
Confidence 489999999999999864
No 14
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=24.61 E-value=42 Score=25.31 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=16.9
Q ss_pred ceeeeccCHHHHHHHHHhh
Q 027812 150 IELRSPVTKEELVAEVSRQ 168 (218)
Q Consensus 150 ~klfGSVT~~dI~~~L~~q 168 (218)
|++-|-||..||.+++...
T Consensus 125 g~l~GiiT~~Dil~~~~~~ 143 (156)
T 3k6e_A 125 GIFQGIITRKSILKAVNAL 143 (156)
T ss_dssp SBEEEEEEHHHHHHHHHHH
T ss_pred CEEEEEEEHHHHHHHHHHH
Confidence 4999999999999999754
No 15
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}
Probab=23.94 E-value=20 Score=26.14 Aligned_cols=33 Identities=6% Similarity=0.337 Sum_probs=26.2
Q ss_pred ccCHHHHHHHHHhhcCCcccCCcccCCCCCccce
Q 027812 155 PVTKEELVAEVSRQLSISIEPENLHLPSPLSAFG 188 (218)
Q Consensus 155 SVT~~dI~~~L~~q~gi~Idk~~I~l~~pIk~~G 188 (218)
|+..-+++-+|.+.||++|+...+... .++++|
T Consensus 61 SL~~veLi~~lE~~FgI~I~~eel~~~-~~~Tv~ 93 (105)
T 2lki_A 61 SMAVVNVITALEEYFDFSVDDDEISAQ-TFETLG 93 (105)
T ss_dssp HHHHHHHHHHHHHHHTSCCCGGGCCGG-GGSBHH
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHhhHH-hcCCHH
Confidence 788899999999999999998876433 356655
No 16
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=23.89 E-value=43 Score=24.30 Aligned_cols=19 Identities=5% Similarity=0.155 Sum_probs=17.0
Q ss_pred ceeeeccCHHHHHHHHHhh
Q 027812 150 IELRSPVTKEELVAEVSRQ 168 (218)
Q Consensus 150 ~klfGSVT~~dI~~~L~~q 168 (218)
|++-|.||..||...+.+.
T Consensus 126 g~~~Giit~~dil~~l~~~ 144 (150)
T 3lqn_A 126 GYFEGILTRRAILKLLNKK 144 (150)
T ss_dssp CBEEEEEEHHHHHHHHHHH
T ss_pred CcEEEEEEHHHHHHHHHHH
Confidence 4899999999999999865
No 17
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=22.99 E-value=41 Score=23.95 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=17.2
Q ss_pred ceeeeccCHHHHHHHHHhhc
Q 027812 150 IELRSPVTKEELVAEVSRQL 169 (218)
Q Consensus 150 ~klfGSVT~~dI~~~L~~q~ 169 (218)
|++-|.||..||...+.+..
T Consensus 112 g~~~Giit~~dil~~~~~~~ 131 (138)
T 2yzi_A 112 GKIVGIFTLSDLLEASRRRL 131 (138)
T ss_dssp TEEEEEEEHHHHHHHHHCCS
T ss_pred CCEEEEEEHHHHHHHHHHHH
Confidence 38999999999999998643
No 18
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=20.50 E-value=46 Score=23.64 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=15.3
Q ss_pred ceeeeccCHHHHHHHHH
Q 027812 150 IELRSPVTKEELVAEVS 166 (218)
Q Consensus 150 ~klfGSVT~~dI~~~L~ 166 (218)
|++-|.||..||.++|.
T Consensus 112 g~~vGivt~~dil~~l~ 128 (130)
T 3i8n_A 112 GTVLGLVTLEDIFEHLV 128 (130)
T ss_dssp SCEEEEEEHHHHHHHHH
T ss_pred CCEEEEEEHHHHHHHHc
Confidence 48999999999999885
No 19
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=20.48 E-value=67 Score=23.37 Aligned_cols=21 Identities=14% Similarity=-0.008 Sum_probs=18.4
Q ss_pred eeeeccCHHHHHHHHHhhcCC
Q 027812 151 ELRSPVTKEELVAEVSRQLSI 171 (218)
Q Consensus 151 klfGSVT~~dI~~~L~~q~gi 171 (218)
++-|.||..||.+++.+..+.
T Consensus 131 ~l~Giit~~dil~~~~~~~~~ 151 (164)
T 2pfi_A 131 RAVGCVSWVEMKKAISNLTNP 151 (164)
T ss_dssp EEEEEEEHHHHHHHHHHHHSC
T ss_pred EEEEEEEHHHHHHHHHhhhCC
Confidence 899999999999999876543
No 20
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=20.25 E-value=45 Score=23.72 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=16.0
Q ss_pred ceeeeccCHHHHHHHHHh
Q 027812 150 IELRSPVTKEELVAEVSR 167 (218)
Q Consensus 150 ~klfGSVT~~dI~~~L~~ 167 (218)
|++-|.||..||.++|..
T Consensus 109 g~~~Giit~~Dil~~l~g 126 (129)
T 3jtf_A 109 GGISGLVTMEDVLEQIVG 126 (129)
T ss_dssp CCEEEEEEHHHHHHHHHH
T ss_pred CCEEEEEEHHHHHHHHhC
Confidence 389999999999999864
No 21
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=20.11 E-value=53 Score=23.32 Aligned_cols=18 Identities=11% Similarity=0.038 Sum_probs=16.1
Q ss_pred ceeeeccCHHHHHHHHHh
Q 027812 150 IELRSPVTKEELVAEVSR 167 (218)
Q Consensus 150 ~klfGSVT~~dI~~~L~~ 167 (218)
|++-|.||..||..++..
T Consensus 124 g~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 124 GRLVGVLTLSDILKYILL 141 (144)
T ss_dssp SBEEEEEEHHHHHHHHHH
T ss_pred CCEEEEEEHHHHHHHHHh
Confidence 489999999999999875
Done!