BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027813
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 64.3 bits (155), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 127 ECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174
EC +CL+ GE R LP C HGFH C+D WL SHS+CP CR ++
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCL 173
G EC +C ++ GE VR LP CNH FH CI WL H SCP CR+ L
Sbjct: 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCR 170
T CV+C+ +F + +R+LP CNH FH +C+DKWL+++ +CP CR
Sbjct: 24 TLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICR 67
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 127 ECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCR 170
+C ICLS GE VR LP C H FH C+D+WL ++ CP CR
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICR 58
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 116 STELKLPGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKC 169
S ++K L C +CL +F P + + + P C H FH +C+ KWL CP C
Sbjct: 6 SGKVKELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 106 ALRNFPVVNYSTELKLPGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSS 165
++ P + + + G + C IC S ++ G+ LP C+H FH C+ WL+ +
Sbjct: 21 SIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGT 79
Query: 166 CPKCR 170
CP CR
Sbjct: 80 CPVCR 84
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCR 170
+ EC IC+ R ++ C H F +CIDKW H +CP CR
Sbjct: 15 EEECCICMDG-----RADLILPCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|2XDQ|A Chain A, Dark Operative Protochlorophyllide Oxidoreductase (Chln-
Chlb)2 Complex
Length = 460
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 111 PVVNYST-ELKLPGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWL-RSHSSCPK 168
PVV T ELK G I +S +LP +R LP+ + G++V ++ +L R+ ++ +
Sbjct: 208 PVVTQLTLELKKQG------IKVSGWLPAKRYTELPVIDEGYYVAGVNPFLSRTATTLIR 261
Query: 169 CRRCLIETCENIVGSTQASSSRHSVPETLTTVSIRP 204
R+C + T +G +R + + T I+P
Sbjct: 262 RRKCQLITAPFPIGP---DGTRTWIEQICATFGIQP 294
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 128 CVICLSNFLPG---ERVRMLPICNHGFHVRCIDKWLRSHSSCP 167
C+ C +N E +CNH FH CI +WL++ CP
Sbjct: 53 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 95
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 128 CVICLSNFLPG---ERVRMLPICNHGFHVRCIDKWLRSHSSCP 167
C+ C +N E +CNH FH CI +WL++ CP
Sbjct: 45 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 87
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 128 CVICLSNFLPG---ERVRMLPICNHGFHVRCIDKWLRSHSSCP 167
C+ C +N E +CNH FH CI +WL++ CP
Sbjct: 51 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 93
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 128 CVICLSNFLPG---ERVRMLPICNHGFHVRCIDKWLRSHSSCP 167
C+ C +N E +CNH FH CI +WL++ CP
Sbjct: 51 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 93
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 144 LPICNHGFHVRCIDKWLRSHSSCP 167
+CNH FH CI +WL++ CP
Sbjct: 81 WGVCNHAFHFHCISRWLKTRQVCP 104
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 128 CVICLSNFLPG---ERVRMLPICNHGFHVRCIDKWLRSHSSCP 167
C+ C +N E +CNH FH CI +WL++ CP
Sbjct: 43 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 85
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 144 LPICNHGFHVRCIDKWLRSHSSCP 167
+CNH FH CI +WL++ CP
Sbjct: 54 WGVCNHAFHFHCISRWLKTRQVCP 77
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRR 171
+ +C+IC F+ + C H F CI++W++ CP CR+
Sbjct: 53 ELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRK 95
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRR 171
+ +C+IC F+ + C H F CI++W++ CP CR+
Sbjct: 53 ELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRK 95
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRR 171
+ +C+IC F+ + C H F CI++W++ CP CR+
Sbjct: 64 ELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRK 106
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 128 CVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCR 170
C ICL + P LP C H F CI +W+R + +CP C+
Sbjct: 8 CPICLED--PSNYSMALP-CLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|2OB2|A Chain A, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|B Chain B, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|C Chain C, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
Length = 327
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 106 ALRN-FPVVNYSTELKLPGLDTECV--------ICLSNFLPGERVRMLPICNHGFHVRCI 156
A+R+ FPV+NY T L+ G+D + + + N G +RMLP+ H+ +
Sbjct: 65 AMRSSFPVMNYGTYLRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYV 124
Query: 157 D 157
D
Sbjct: 125 D 125
>pdb|1RJD|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJG|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
Length = 334
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 106 ALRN-FPVVNYSTELKLPGLDTECV--------ICLSNFLPGERVRMLPICNHGFHVRCI 156
A+R+ FPV+NY T L+ G+D + + + N G +RMLP+ H+ +
Sbjct: 66 AMRSSFPVMNYGTYLRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYV 125
Query: 157 D 157
D
Sbjct: 126 D 126
>pdb|2OB1|A Chain A, Ppm1 With 1,8-Ans
pdb|2OB1|B Chain B, Ppm1 With 1,8-Ans
pdb|2OB1|C Chain C, Ppm1 With 1,8-Ans
Length = 319
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 106 ALRN-FPVVNYSTELKLPGLDTECV--------ICLSNFLPGERVRMLPICNHGFHVRCI 156
A+R+ FPV+NY T L+ G+D + + + N G +RMLP+ H+ +
Sbjct: 57 AMRSSFPVMNYGTYLRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYV 116
Query: 157 D 157
D
Sbjct: 117 D 117
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 147 CNHGFHVRCIDKWLRSHSSCPKCRR 171
CNH FH C+ W++ ++ CP C++
Sbjct: 48 CNHSFHNCCMSLWVKQNNRCPLCQQ 72
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 260 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 297
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 235 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 272
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 128 CVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKC 169
C IC F ++P C+H + CI K+L + CP C
Sbjct: 25 CGICFEYF---NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 236 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 273
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 239 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 276
>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Amp-Pnp
pdb|2ITO|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Iressa
pdb|2ITP|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Aee788
pdb|2ITQ|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Afn941
Length = 327
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 235 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 272
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 236 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 273
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 235 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 272
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 237 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 274
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 238 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 275
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 269 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 306
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 235 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 272
>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s)
Length = 334
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 242 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 279
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 238 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 275
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 237 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 274
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 238 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 275
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 235 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 272
>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN The Apo Form
pdb|3UG2|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Gefitinib
pdb|3VJN|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Amppnp
Length = 334
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 242 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 279
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 232 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 269
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 242 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 279
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 241 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 278
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 122 PGLDTECVICLSNF---LPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRR 171
P C IC+ + + R+ + C H F +C+ L++ ++CP CR+
Sbjct: 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 59
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 237 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 274
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 239 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 276
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 229 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 266
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 138 GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175
GER+ PIC ++ + W+ S PK R +IE
Sbjct: 242 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 279
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 122 PGLDTECVICLSNF---LPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRR 171
P C IC+ + + R+ + C H F +C+ L++ ++CP CR+
Sbjct: 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 64
>pdb|3NYB|A Chain A, Structure And Function Of The Polymerase Core Of Tramp, A
Rna Surveillance Complex
Length = 323
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 114 NYSTELKLPGLDTECVIC 131
+YST+L LPG D +CV+
Sbjct: 67 SYSTDLYLPGSDIDCVVT 84
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 123 GLDTECVICLSNF---LPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRR 171
G C IC+ + + R+ + C H F +C+ L++ ++CP CR+
Sbjct: 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 52
>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The
Escherichia Coli Chaperone Protein Dnaj
Length = 79
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 116 STELKLPGLDTECVIC-LSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCR 170
+ E+++P L+ EC +C S PG + + P C+ V+ + +CP C+
Sbjct: 3 TKEIRIPTLE-ECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQ 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,745,605
Number of Sequences: 62578
Number of extensions: 190013
Number of successful extensions: 497
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 439
Number of HSP's gapped (non-prelim): 77
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)