Query 027813
Match_columns 218
No_of_seqs 192 out of 1734
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 15:34:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.9 2.8E-21 6.1E-26 168.0 11.0 78 100-179 205-283 (348)
2 PF13639 zf-RING_2: Ring finge 99.7 3.3E-17 7.1E-22 102.6 2.6 44 126-170 1-44 (44)
3 PHA02929 N1R/p28-like protein; 99.5 4.6E-14 9.9E-19 118.1 4.9 76 99-174 147-227 (238)
4 PF12678 zf-rbx1: RING-H2 zinc 99.5 5.8E-14 1.3E-18 97.3 4.2 46 124-170 18-73 (73)
5 COG5540 RING-finger-containing 99.4 5.1E-14 1.1E-18 119.2 3.5 52 123-175 321-373 (374)
6 COG5243 HRD1 HRD ubiquitin lig 99.4 6.5E-13 1.4E-17 115.3 7.1 66 105-174 270-345 (491)
7 cd00162 RING RING-finger (Real 99.1 3.6E-11 7.8E-16 74.1 3.6 44 127-173 1-45 (45)
8 PF13920 zf-C3HC4_3: Zinc fing 99.1 3.7E-11 8E-16 77.0 3.6 46 125-174 2-48 (50)
9 KOG0317 Predicted E3 ubiquitin 99.1 1.2E-10 2.5E-15 98.6 5.9 51 122-176 236-286 (293)
10 PF13923 zf-C3HC4_2: Zinc fing 99.1 7.9E-11 1.7E-15 71.6 3.5 39 128-169 1-39 (39)
11 PLN03208 E3 ubiquitin-protein 99.1 1.6E-10 3.4E-15 93.4 6.1 50 123-176 16-81 (193)
12 PF12861 zf-Apc11: Anaphase-pr 99.1 7.3E-11 1.6E-15 83.1 3.5 52 124-175 20-83 (85)
13 KOG0823 Predicted E3 ubiquitin 99.1 1.8E-10 4E-15 94.7 5.7 51 122-176 44-97 (230)
14 KOG0802 E3 ubiquitin ligase [P 99.0 2.2E-10 4.8E-15 107.2 2.8 53 123-176 289-343 (543)
15 PF14634 zf-RING_5: zinc-RING 99.0 4.4E-10 9.4E-15 70.1 3.1 44 127-171 1-44 (44)
16 COG5194 APC11 Component of SCF 99.0 3.5E-10 7.5E-15 77.8 2.5 51 126-176 21-83 (88)
17 PHA02926 zinc finger-like prot 99.0 4.3E-10 9.4E-15 92.1 3.3 52 123-174 168-230 (242)
18 KOG0320 Predicted E3 ubiquitin 98.9 7.4E-10 1.6E-14 87.6 3.3 53 122-176 128-180 (187)
19 PF00097 zf-C3HC4: Zinc finger 98.9 1.4E-09 2.9E-14 66.6 2.7 39 128-169 1-41 (41)
20 smart00184 RING Ring finger. E 98.9 2E-09 4.3E-14 63.9 3.2 38 128-169 1-39 (39)
21 PF15227 zf-C3HC4_4: zinc fing 98.8 5.6E-09 1.2E-13 64.5 3.0 38 128-169 1-42 (42)
22 KOG1493 Anaphase-promoting com 98.8 1.1E-09 2.4E-14 74.7 -0.2 52 123-174 18-81 (84)
23 smart00504 Ubox Modified RING 98.7 1.8E-08 3.8E-13 67.2 3.9 45 126-174 2-46 (63)
24 KOG1734 Predicted RING-contain 98.6 7.5E-09 1.6E-13 86.8 0.6 51 123-174 222-281 (328)
25 KOG2930 SCF ubiquitin ligase, 98.6 1.4E-08 2.9E-13 73.4 1.7 52 123-174 44-108 (114)
26 KOG0828 Predicted E3 ubiquitin 98.6 4.3E-08 9.4E-13 88.3 5.2 50 125-175 571-635 (636)
27 TIGR00599 rad18 DNA repair pro 98.6 2.9E-08 6.2E-13 88.9 3.2 49 123-175 24-72 (397)
28 smart00744 RINGv The RING-vari 98.6 5.4E-08 1.2E-12 62.1 3.1 42 127-170 1-49 (49)
29 PF13445 zf-RING_UBOX: RING-ty 98.5 1.1E-07 2.4E-12 58.9 2.6 38 128-167 1-43 (43)
30 COG5574 PEX10 RING-finger-cont 98.4 9.6E-08 2.1E-12 80.1 2.4 51 123-177 213-265 (271)
31 PF11793 FANCL_C: FANCL C-term 98.3 1.1E-07 2.5E-12 65.1 0.3 51 125-175 2-67 (70)
32 COG5219 Uncharacterized conser 98.3 1.5E-07 3.2E-12 90.4 0.0 52 123-174 1467-1523(1525)
33 KOG0804 Cytoplasmic Zn-finger 98.3 3.3E-07 7.2E-12 81.9 1.6 50 123-175 173-223 (493)
34 KOG2164 Predicted E3 ubiquitin 98.2 8.5E-07 1.8E-11 80.6 2.7 48 125-176 186-238 (513)
35 TIGR00570 cdk7 CDK-activating 98.2 1.4E-06 3.1E-11 75.4 3.6 51 125-176 3-56 (309)
36 KOG0827 Predicted E3 ubiquitin 98.1 1.2E-06 2.6E-11 77.1 1.9 44 126-170 5-52 (465)
37 KOG0287 Postreplication repair 98.1 1.1E-06 2.3E-11 76.3 1.3 48 125-176 23-70 (442)
38 PF04564 U-box: U-box domain; 98.1 3.7E-06 7.9E-11 58.1 3.6 48 125-176 4-52 (73)
39 KOG4265 Predicted E3 ubiquitin 98.0 3.7E-06 8E-11 73.5 3.7 53 123-179 288-341 (349)
40 COG5432 RAD18 RING-finger-cont 98.0 2.7E-06 5.9E-11 72.4 2.1 50 124-177 24-73 (391)
41 KOG2177 Predicted E3 ubiquitin 98.0 2.3E-06 5.1E-11 72.3 1.5 44 123-170 11-54 (386)
42 KOG1645 RING-finger-containing 98.0 4.6E-06 9.9E-11 73.9 3.2 49 124-172 3-54 (463)
43 PF14835 zf-RING_6: zf-RING of 97.9 3.2E-06 7E-11 56.3 -0.1 50 126-180 8-57 (65)
44 KOG0825 PHD Zn-finger protein 97.8 2.9E-06 6.2E-11 80.4 -0.6 52 124-176 122-173 (1134)
45 KOG3970 Predicted E3 ubiquitin 97.8 6.6E-06 1.4E-10 67.7 1.2 58 122-181 47-112 (299)
46 KOG4445 Uncharacterized conser 97.8 6.9E-06 1.5E-10 70.2 0.9 51 125-176 115-188 (368)
47 KOG1039 Predicted E3 ubiquitin 97.8 1.2E-05 2.6E-10 71.0 2.2 51 123-173 159-220 (344)
48 KOG0311 Predicted E3 ubiquitin 97.6 6.3E-06 1.4E-10 71.9 -1.8 51 124-177 42-93 (381)
49 PF05883 Baculo_RING: Baculovi 97.5 3.7E-05 8E-10 58.7 1.2 36 124-160 25-66 (134)
50 KOG1428 Inhibitor of type V ad 97.4 0.0001 2.2E-09 74.0 3.0 65 109-174 3470-3544(3738)
51 KOG1785 Tyrosine kinase negati 97.4 0.00013 2.8E-09 64.8 3.0 54 126-183 370-425 (563)
52 KOG0801 Predicted E3 ubiquitin 97.3 7.3E-05 1.6E-09 58.6 0.9 42 111-154 164-205 (205)
53 KOG0824 Predicted E3 ubiquitin 97.3 0.0001 2.2E-09 63.2 1.6 48 125-176 7-55 (324)
54 KOG4172 Predicted E3 ubiquitin 97.3 6.7E-05 1.5E-09 48.2 0.4 47 125-175 7-55 (62)
55 KOG0978 E3 ubiquitin ligase in 97.2 9.4E-05 2E-09 70.3 0.4 46 126-175 644-690 (698)
56 KOG1941 Acetylcholine receptor 97.2 0.00013 2.8E-09 64.6 1.0 45 125-170 365-412 (518)
57 PF12906 RINGv: RING-variant d 97.0 0.00052 1.1E-08 43.2 2.3 40 128-169 1-47 (47)
58 KOG4159 Predicted E3 ubiquitin 97.0 0.00037 7.9E-09 62.8 2.0 49 123-175 82-130 (398)
59 PF11789 zf-Nse: Zinc-finger o 96.9 0.00057 1.2E-08 44.8 2.1 42 124-168 10-53 (57)
60 KOG0297 TNF receptor-associate 96.9 0.00063 1.4E-08 61.5 2.8 51 123-176 19-69 (391)
61 PHA02862 5L protein; Provision 96.7 0.001 2.3E-08 51.3 2.4 45 126-175 3-54 (156)
62 PF10367 Vps39_2: Vacuolar sor 96.7 0.00075 1.6E-08 49.3 1.4 32 124-157 77-108 (109)
63 KOG0826 Predicted E3 ubiquitin 96.7 0.0045 9.8E-08 53.8 6.1 48 122-172 297-344 (357)
64 KOG1952 Transcription factor N 96.5 0.0014 3E-08 63.2 1.9 50 123-172 189-245 (950)
65 PHA02825 LAP/PHD finger-like p 96.4 0.0034 7.3E-08 49.3 3.2 49 123-176 6-61 (162)
66 KOG1571 Predicted E3 ubiquitin 96.3 0.0034 7.5E-08 55.2 3.0 46 123-175 303-348 (355)
67 KOG2879 Predicted E3 ubiquitin 96.2 0.0061 1.3E-07 51.9 4.2 52 122-176 236-289 (298)
68 KOG0827 Predicted E3 ubiquitin 96.2 0.00025 5.4E-09 62.8 -4.3 52 124-176 195-247 (465)
69 PHA03096 p28-like protein; Pro 96.2 0.0023 5.1E-08 55.3 1.6 37 126-162 179-219 (284)
70 COG5236 Uncharacterized conser 95.9 0.011 2.4E-07 51.9 4.3 63 106-172 42-106 (493)
71 KOG1814 Predicted E3 ubiquitin 95.9 0.0042 9.2E-08 55.5 1.8 37 125-162 184-220 (445)
72 KOG1002 Nucleotide excision re 95.9 0.0045 9.7E-08 57.1 1.9 48 123-174 534-586 (791)
73 KOG2660 Locus-specific chromos 95.8 0.002 4.3E-08 56.0 -0.3 50 124-176 14-63 (331)
74 COG5152 Uncharacterized conser 95.7 0.0036 7.9E-08 50.9 0.8 43 126-172 197-239 (259)
75 KOG3039 Uncharacterized conser 95.7 0.01 2.2E-07 49.9 3.1 54 124-177 220-273 (303)
76 PF14570 zf-RING_4: RING/Ubox 95.6 0.011 2.4E-07 37.3 2.5 45 128-173 1-47 (48)
77 KOG4692 Predicted E3 ubiquitin 95.3 0.021 4.5E-07 50.4 4.1 50 123-176 420-469 (489)
78 PF08746 zf-RING-like: RING-li 95.3 0.0079 1.7E-07 37.1 1.1 41 128-169 1-43 (43)
79 COG5222 Uncharacterized conser 95.2 0.015 3.4E-07 50.1 2.8 43 126-171 275-318 (427)
80 KOG4739 Uncharacterized protei 95.1 0.0072 1.6E-07 50.6 0.6 43 127-173 5-47 (233)
81 KOG4275 Predicted E3 ubiquitin 94.7 0.0066 1.4E-07 52.1 -0.8 44 125-175 300-343 (350)
82 KOG1940 Zn-finger protein [Gen 94.6 0.015 3.3E-07 49.9 1.4 48 126-175 159-207 (276)
83 KOG1813 Predicted E3 ubiquitin 94.4 0.019 4.1E-07 49.4 1.3 44 126-173 242-285 (313)
84 KOG3268 Predicted E3 ubiquitin 94.3 0.023 4.9E-07 45.6 1.5 28 147-174 190-228 (234)
85 KOG4185 Predicted E3 ubiquitin 94.0 0.037 8E-07 47.9 2.4 47 126-173 4-54 (296)
86 KOG2114 Vacuolar assembly/sort 93.8 0.028 6E-07 54.6 1.3 41 126-172 841-881 (933)
87 PF04641 Rtf2: Rtf2 RING-finge 93.7 0.086 1.9E-06 45.0 4.1 53 123-176 111-163 (260)
88 PF10272 Tmpp129: Putative tra 93.5 0.072 1.6E-06 47.5 3.4 28 147-174 311-351 (358)
89 KOG2034 Vacuolar sorting prote 93.5 0.035 7.6E-07 54.2 1.4 36 123-160 815-850 (911)
90 PF14446 Prok-RING_1: Prokaryo 93.3 0.12 2.7E-06 33.3 3.4 35 124-158 4-38 (54)
91 COG5175 MOT2 Transcriptional r 93.2 0.062 1.3E-06 47.2 2.4 54 122-176 11-66 (480)
92 KOG3053 Uncharacterized conser 92.8 0.052 1.1E-06 45.9 1.3 52 122-174 17-82 (293)
93 PF14447 Prok-RING_4: Prokaryo 92.5 0.052 1.1E-06 35.1 0.8 44 126-175 8-51 (55)
94 KOG0309 Conserved WD40 repeat- 92.4 0.072 1.6E-06 51.3 1.9 22 147-168 1048-1069(1081)
95 KOG1001 Helicase-like transcri 92.4 0.052 1.1E-06 52.4 0.9 46 126-176 455-502 (674)
96 PF07800 DUF1644: Protein of u 91.9 0.19 4.2E-06 39.6 3.4 34 125-161 2-47 (162)
97 KOG0298 DEAD box-containing he 91.3 0.064 1.4E-06 54.3 0.3 45 124-171 1152-1196(1394)
98 KOG1609 Protein involved in mR 90.1 0.19 4.1E-06 43.5 2.1 51 125-176 78-136 (323)
99 KOG2932 E3 ubiquitin ligase in 89.9 0.12 2.7E-06 44.9 0.7 44 126-174 91-134 (389)
100 KOG3161 Predicted E3 ubiquitin 89.9 0.087 1.9E-06 49.9 -0.2 44 126-172 12-55 (861)
101 PF03854 zf-P11: P-11 zinc fin 89.4 0.17 3.6E-06 31.7 0.8 43 127-175 4-47 (50)
102 PF02439 Adeno_E3_CR2: Adenovi 89.0 1.1 2.4E-05 26.7 4.1 29 51-80 5-33 (38)
103 KOG0802 E3 ubiquitin ligase [P 87.6 0.29 6.3E-06 46.2 1.6 47 122-176 476-522 (543)
104 COG5220 TFB3 Cdk activating ki 87.5 0.25 5.5E-06 41.5 1.0 48 124-171 9-61 (314)
105 COG5183 SSM4 Protein involved 87.2 0.43 9.3E-06 46.5 2.5 52 123-176 10-68 (1175)
106 KOG0825 PHD Zn-finger protein 85.1 0.6 1.3E-05 45.5 2.3 51 124-174 95-154 (1134)
107 KOG3899 Uncharacterized conser 84.9 0.48 1E-05 41.0 1.4 30 147-176 325-367 (381)
108 KOG1812 Predicted E3 ubiquitin 84.7 0.34 7.4E-06 43.8 0.5 38 124-162 145-183 (384)
109 KOG3800 Predicted E3 ubiquitin 84.1 0.88 1.9E-05 39.3 2.6 47 127-174 2-51 (300)
110 PF13901 DUF4206: Domain of un 83.6 0.82 1.8E-05 37.6 2.2 40 125-170 152-196 (202)
111 KOG2066 Vacuolar assembly/sort 83.3 0.46 1E-05 46.1 0.7 43 125-169 784-830 (846)
112 KOG2817 Predicted E3 ubiquitin 82.9 1.1 2.3E-05 40.4 2.8 43 126-169 335-380 (394)
113 KOG3799 Rab3 effector RIM1 and 81.9 0.41 9E-06 36.7 -0.1 59 123-182 63-128 (169)
114 KOG4362 Transcriptional regula 81.6 0.38 8.3E-06 46.2 -0.5 46 126-175 22-70 (684)
115 KOG3002 Zn finger protein [Gen 80.3 1.3 2.8E-05 38.7 2.3 45 124-176 47-93 (299)
116 PF05290 Baculo_IE-1: Baculovi 80.0 1.2 2.7E-05 34.1 1.9 53 124-176 79-134 (140)
117 PF15050 SCIMP: SCIMP protein 79.0 4.6 9.9E-05 30.4 4.5 22 50-71 6-27 (133)
118 KOG0269 WD40 repeat-containing 77.8 1.5 3.2E-05 42.6 2.1 41 126-168 780-820 (839)
119 KOG1829 Uncharacterized conser 77.7 0.81 1.8E-05 43.3 0.3 41 125-169 511-556 (580)
120 PF01102 Glycophorin_A: Glycop 77.0 5.9 0.00013 30.0 4.8 6 46-51 59-64 (122)
121 TIGR00622 ssl1 transcription f 76.7 3.9 8.4E-05 30.5 3.6 46 125-170 55-110 (112)
122 smart00132 LIM Zinc-binding do 76.4 2.7 5.8E-05 24.0 2.3 38 127-174 1-38 (39)
123 smart00249 PHD PHD zinc finger 76.2 1.8 3.9E-05 25.7 1.5 31 127-158 1-31 (47)
124 PF02009 Rifin_STEVOR: Rifin/s 75.6 4 8.7E-05 35.7 4.0 21 56-76 262-282 (299)
125 PF15176 LRR19-TM: Leucine-ric 74.9 15 0.00032 26.9 6.1 25 52-76 17-41 (102)
126 PF01708 Gemini_mov: Geminivir 74.6 6.3 0.00014 28.1 4.1 36 39-74 25-60 (91)
127 PF07975 C1_4: TFIIH C1-like d 74.4 2.6 5.5E-05 26.9 1.9 42 128-170 2-50 (51)
128 KOG3005 GIY-YIG type nuclease 74.3 1.9 4E-05 36.9 1.6 50 125-174 182-243 (276)
129 KOG4718 Non-SMC (structural ma 73.9 1.7 3.7E-05 35.9 1.2 45 123-170 179-223 (235)
130 PF03229 Alpha_GJ: Alphavirus 73.7 12 0.00025 28.1 5.4 33 51-83 85-117 (126)
131 PF00412 LIM: LIM domain; Int 72.5 3 6.5E-05 26.4 2.0 39 128-176 1-39 (58)
132 PF15176 LRR19-TM: Leucine-ric 71.3 13 0.00027 27.2 5.0 36 40-75 9-44 (102)
133 PF14979 TMEM52: Transmembrane 71.2 12 0.00027 29.1 5.3 30 52-82 22-51 (154)
134 PF06679 DUF1180: Protein of u 71.2 15 0.00032 29.2 6.0 31 49-79 90-120 (163)
135 KOG1815 Predicted E3 ubiquitin 71.1 2.5 5.4E-05 38.9 1.8 37 123-162 68-104 (444)
136 KOG1100 Predicted E3 ubiquitin 69.9 2.5 5.4E-05 35.0 1.4 39 128-174 161-200 (207)
137 PF10571 UPF0547: Uncharacteri 68.9 3.2 6.9E-05 22.6 1.2 23 127-151 2-24 (26)
138 PF02009 Rifin_STEVOR: Rifin/s 68.7 7.7 0.00017 33.9 4.2 33 48-80 251-283 (299)
139 PF02891 zf-MIZ: MIZ/SP-RING z 68.4 7 0.00015 24.6 2.9 40 127-172 4-50 (50)
140 KOG3113 Uncharacterized conser 67.7 5.3 0.00011 34.0 2.8 57 125-183 111-167 (293)
141 PF00628 PHD: PHD-finger; Int 67.4 2.5 5.4E-05 26.2 0.7 44 127-171 1-50 (51)
142 PF08374 Protocadherin: Protoc 67.2 4.7 0.0001 33.5 2.4 32 44-76 32-63 (221)
143 PF07010 Endomucin: Endomucin; 66.0 23 0.0005 29.7 6.2 29 48-76 186-214 (259)
144 PF13719 zinc_ribbon_5: zinc-r 64.7 4.4 9.6E-05 23.8 1.4 25 127-152 4-36 (37)
145 KOG4367 Predicted Zn-finger pr 63.6 3.4 7.3E-05 37.8 1.0 33 124-160 3-35 (699)
146 KOG2807 RNA polymerase II tran 63.6 7.8 0.00017 34.2 3.2 69 102-171 306-375 (378)
147 PF10717 ODV-E18: Occlusion-de 63.3 12 0.00027 26.2 3.5 20 45-64 19-38 (85)
148 PF15102 TMEM154: TMEM154 prot 62.4 2.7 5.9E-05 32.7 0.2 10 153-162 127-136 (146)
149 PF12877 DUF3827: Domain of un 62.1 11 0.00023 36.3 4.1 31 46-76 263-293 (684)
150 PF05454 DAG1: Dystroglycan (D 61.8 2.6 5.7E-05 36.7 0.0 23 7-29 87-109 (290)
151 PF05393 Hum_adeno_E3A: Human 61.3 15 0.00032 26.1 3.7 6 79-84 59-64 (94)
152 PF13717 zinc_ribbon_4: zinc-r 61.3 4.6 0.0001 23.6 1.0 25 127-152 4-36 (36)
153 TIGR01477 RIFIN variant surfac 60.4 11 0.00024 33.7 3.6 10 66-75 326-335 (353)
154 KOG3637 Vitronectin receptor, 60.3 8.2 0.00018 39.4 3.2 35 49-83 976-1010(1030)
155 PF10577 UPF0560: Uncharacteri 59.1 23 0.0005 35.0 5.8 27 53-79 273-299 (807)
156 PF01363 FYVE: FYVE zinc finge 57.7 4.5 9.7E-05 26.8 0.6 37 124-160 8-44 (69)
157 PTZ00046 rifin; Provisional 57.5 12 0.00026 33.5 3.4 9 67-75 332-340 (358)
158 PF11057 Cortexin: Cortexin of 56.9 22 0.00048 24.5 3.8 8 69-76 42-49 (81)
159 PRK01844 hypothetical protein; 55.8 31 0.00067 23.6 4.4 25 52-76 5-29 (72)
160 KOG2068 MOT2 transcription fac 55.3 17 0.00037 32.1 3.9 48 126-174 250-298 (327)
161 KOG1729 FYVE finger containing 54.1 2.2 4.8E-05 37.1 -1.7 38 126-164 215-252 (288)
162 PF04689 S1FA: DNA binding pro 54.0 11 0.00025 25.1 2.0 31 46-76 8-38 (69)
163 PF15330 SIT: SHP2-interacting 53.6 23 0.00049 26.2 3.8 17 55-71 3-19 (107)
164 PF08114 PMP1_2: ATPase proteo 53.4 16 0.00036 22.1 2.4 9 52-60 10-18 (43)
165 TIGR01478 STEVOR variant surfa 52.4 21 0.00047 30.9 4.0 8 75-82 281-288 (295)
166 PF14914 LRRC37AB_C: LRRC37A/B 52.2 32 0.00069 26.9 4.5 32 44-75 113-144 (154)
167 PF02060 ISK_Channel: Slow vol 51.8 37 0.0008 25.8 4.7 8 52-59 44-51 (129)
168 PF13908 Shisa: Wnt and FGF in 51.7 10 0.00023 30.2 1.9 7 54-60 80-86 (179)
169 KOG1812 Predicted E3 ubiquitin 51.5 8.2 0.00018 34.9 1.4 44 125-169 306-351 (384)
170 cd00065 FYVE FYVE domain; Zinc 50.9 13 0.00028 23.4 1.9 35 126-160 3-37 (57)
171 PTZ00370 STEVOR; Provisional 50.8 21 0.00047 31.0 3.7 8 75-82 277-284 (296)
172 PF03119 DNA_ligase_ZBD: NAD-d 48.6 7.9 0.00017 21.4 0.5 16 165-180 1-16 (28)
173 PHA02849 putative transmembran 48.0 49 0.0011 23.0 4.4 19 45-63 9-27 (82)
174 PF06906 DUF1272: Protein of u 47.9 29 0.00064 22.5 3.1 46 126-176 6-54 (57)
175 smart00064 FYVE Protein presen 47.2 17 0.00036 23.9 2.1 36 125-160 10-45 (68)
176 KOG3039 Uncharacterized conser 47.1 13 0.00029 31.6 1.9 35 123-161 41-75 (303)
177 PF04639 Baculo_E56: Baculovir 46.8 14 0.0003 32.1 2.0 19 12-30 244-262 (305)
178 TIGR01477 RIFIN variant surfac 46.6 31 0.00068 30.8 4.2 27 54-82 311-337 (353)
179 cd00350 rubredoxin_like Rubred 46.5 11 0.00024 21.4 1.0 19 147-171 7-25 (33)
180 PTZ00046 rifin; Provisional 46.4 31 0.00067 31.0 4.2 27 54-82 316-342 (358)
181 PF13314 DUF4083: Domain of un 46.4 73 0.0016 20.8 4.8 13 64-76 18-30 (58)
182 PF05510 Sarcoglycan_2: Sarcog 45.3 53 0.0011 29.8 5.5 33 44-76 277-309 (386)
183 PF04423 Rad50_zn_hook: Rad50 45.3 7 0.00015 24.8 -0.0 13 165-177 22-34 (54)
184 PF14991 MLANA: Protein melan- 45.3 3.5 7.6E-05 30.7 -1.6 14 68-81 37-50 (118)
185 KOG3842 Adaptor protein Pellin 45.3 26 0.00056 30.9 3.4 54 122-176 338-416 (429)
186 KOG2041 WD40 repeat protein [G 45.0 19 0.00041 35.4 2.7 50 120-173 1126-1184(1189)
187 PF14169 YdjO: Cold-inducible 43.7 11 0.00024 24.8 0.7 15 163-177 39-53 (59)
188 COG5109 Uncharacterized conser 43.6 18 0.00039 31.9 2.2 43 126-169 337-382 (396)
189 PF07406 NICE-3: NICE-3 protei 43.5 29 0.00063 28.2 3.3 16 153-168 126-143 (186)
190 PF06844 DUF1244: Protein of u 43.3 15 0.00033 24.7 1.3 12 150-161 11-22 (68)
191 COG3763 Uncharacterized protei 41.7 71 0.0015 21.7 4.4 23 53-75 6-28 (71)
192 PF07649 C1_3: C1-like domain; 41.3 22 0.00048 19.5 1.7 29 127-156 2-30 (30)
193 PRK00523 hypothetical protein; 40.7 72 0.0016 21.8 4.3 25 52-76 6-30 (72)
194 KOG2071 mRNA cleavage and poly 40.4 16 0.00036 34.6 1.6 35 123-159 511-556 (579)
195 KOG1815 Predicted E3 ubiquitin 38.1 11 0.00023 34.8 0.0 39 123-162 224-267 (444)
196 PF07172 GRP: Glycine rich pro 37.7 56 0.0012 23.5 3.7 15 50-64 3-17 (95)
197 PF02480 Herpes_gE: Alphaherpe 37.3 11 0.00024 34.7 0.0 22 60-81 360-381 (439)
198 KOG0956 PHD finger protein AF1 36.7 22 0.00047 34.6 1.8 51 123-174 115-182 (900)
199 PF04710 Pellino: Pellino; In 36.0 12 0.00026 33.9 0.0 51 124-175 327-402 (416)
200 PRK05978 hypothetical protein; 35.8 18 0.00039 28.3 0.9 24 148-176 42-65 (148)
201 KOG2979 Protein involved in DN 34.9 22 0.00047 30.4 1.3 42 125-169 176-219 (262)
202 KOG4577 Transcription factor L 34.6 8.8 0.00019 33.3 -1.0 35 124-160 91-125 (383)
203 PHA02819 hypothetical protein; 34.6 1E+02 0.0022 21.0 4.3 7 11-17 19-25 (71)
204 PHA02844 putative transmembran 34.0 1E+02 0.0022 21.2 4.2 7 11-17 19-25 (75)
205 PF07438 DUF1514: Protein of u 33.9 45 0.00098 22.2 2.5 14 52-65 1-14 (66)
206 PLN02189 cellulose synthase 33.8 43 0.00092 34.3 3.4 51 124-174 33-87 (1040)
207 PF12575 DUF3753: Protein of u 33.8 1.3E+02 0.0028 20.6 4.7 6 12-17 20-25 (72)
208 PF13807 GNVR: G-rich domain o 33.1 1.3E+02 0.0029 20.5 5.0 12 59-70 66-77 (82)
209 KOG1538 Uncharacterized conser 33.1 21 0.00045 34.8 1.0 35 140-174 1043-1077(1081)
210 PF15065 NCU-G1: Lysosomal tra 32.8 29 0.00063 31.1 1.9 33 44-76 311-343 (350)
211 PF01299 Lamp: Lysosome-associ 32.6 37 0.00079 29.5 2.5 10 54-63 275-284 (306)
212 PF05568 ASFV_J13L: African sw 32.6 89 0.0019 24.5 4.2 6 171-176 121-126 (189)
213 smart00647 IBR In Between Ring 32.5 15 0.00032 23.5 0.0 19 141-159 40-58 (64)
214 PHA02947 S-S bond formation pa 31.6 58 0.0013 27.1 3.3 31 46-76 173-203 (215)
215 PF01299 Lamp: Lysosome-associ 31.3 41 0.00088 29.3 2.5 26 54-80 272-297 (306)
216 KOG1245 Chromatin remodeling c 31.1 23 0.00049 37.5 1.1 50 123-173 1106-1159(1404)
217 PF14311 DUF4379: Domain of un 31.1 28 0.0006 22.0 1.1 22 147-169 34-55 (55)
218 PHA02657 hypothetical protein; 31.0 1.2E+02 0.0025 21.6 4.2 26 46-71 22-47 (95)
219 PF07191 zinc-ribbons_6: zinc- 30.8 5 0.00011 27.3 -2.5 40 126-174 2-41 (70)
220 PRK11827 hypothetical protein; 30.5 16 0.00035 24.1 -0.1 20 157-176 2-21 (60)
221 KOG3579 Predicted E3 ubiquitin 30.4 21 0.00045 31.0 0.5 36 124-163 267-306 (352)
222 PF10661 EssA: WXG100 protein 30.3 98 0.0021 24.0 4.3 9 66-74 133-141 (145)
223 PHA02650 hypothetical protein; 30.3 1.2E+02 0.0025 21.2 4.1 8 11-18 19-26 (81)
224 PHA03054 IMV membrane protein; 30.1 1.3E+02 0.0029 20.4 4.2 7 11-17 19-25 (72)
225 PF14569 zf-UDP: Zinc-binding 30.0 75 0.0016 22.1 3.1 51 124-174 8-62 (80)
226 TIGR02976 phageshock_pspB phag 29.5 1.3E+02 0.0029 20.6 4.3 9 68-76 19-27 (75)
227 PF13832 zf-HC5HC2H_2: PHD-zin 29.4 32 0.00069 24.8 1.4 33 125-159 55-88 (110)
228 PF15048 OSTbeta: Organic solu 29.3 1.1E+02 0.0023 23.3 4.1 8 45-52 32-39 (125)
229 PF15353 HECA: Headcase protei 28.9 31 0.00067 25.4 1.1 13 147-159 40-52 (107)
230 PF06937 EURL: EURL protein; 28.9 47 0.001 28.6 2.4 19 150-168 56-75 (285)
231 PHA02662 ORF131 putative membr 28.7 74 0.0016 26.6 3.4 25 52-76 187-211 (226)
232 PF10497 zf-4CXXC_R1: Zinc-fin 28.0 64 0.0014 23.6 2.7 24 148-171 37-69 (105)
233 COG5627 MMS21 DNA repair prote 27.7 28 0.00062 29.4 0.9 42 124-168 188-231 (275)
234 PF09943 DUF2175: Uncharacteri 27.5 51 0.0011 24.1 2.1 32 127-160 4-35 (101)
235 PF02318 FYVE_2: FYVE-type zin 27.4 47 0.001 24.6 2.0 46 124-171 53-102 (118)
236 PHA02935 Hypothetical protein; 27.3 2.1E+02 0.0046 23.8 5.9 20 46-65 308-327 (349)
237 PF09723 Zn-ribbon_8: Zinc rib 26.8 13 0.00028 22.4 -1.0 24 147-171 11-34 (42)
238 KOG4482 Sarcoglycan complex, a 26.4 1.4E+02 0.0029 27.2 4.9 32 45-76 290-321 (449)
239 PF05605 zf-Di19: Drought indu 26.4 7.5 0.00016 24.6 -2.2 37 126-171 3-39 (54)
240 smart00531 TFIIE Transcription 26.2 68 0.0015 24.7 2.7 14 164-177 124-137 (147)
241 PF15298 AJAP1_PANP_C: AJAP1/P 26.0 34 0.00073 28.1 1.0 13 64-76 112-124 (205)
242 PTZ00208 65 kDa invariant surf 25.9 50 0.0011 30.1 2.1 25 52-76 386-410 (436)
243 PRK14762 membrane protein; Pro 25.9 1.2E+02 0.0026 16.3 3.5 17 53-69 6-22 (27)
244 PHA02692 hypothetical protein; 25.8 1.8E+02 0.0039 19.7 4.3 7 11-17 19-25 (70)
245 PF04216 FdhE: Protein involve 25.7 9.1 0.0002 33.1 -2.5 48 124-172 171-220 (290)
246 PF11120 DUF2636: Protein of u 25.6 1.2E+02 0.0026 20.1 3.4 22 55-76 7-28 (62)
247 KOG0860 Synaptobrevin/VAMP-lik 25.6 1E+02 0.0022 23.1 3.4 6 54-59 96-101 (116)
248 PHA03240 envelope glycoprotein 25.4 92 0.002 26.0 3.4 9 52-60 214-222 (258)
249 PF07282 OrfB_Zn_ribbon: Putat 25.3 62 0.0013 21.2 2.1 35 124-158 27-63 (69)
250 PF13771 zf-HC5HC2H: PHD-like 25.2 45 0.00097 23.0 1.5 32 125-158 36-68 (90)
251 PLN02436 cellulose synthase A 24.9 75 0.0016 32.7 3.3 50 125-174 36-89 (1094)
252 PF14316 DUF4381: Domain of un 24.8 1.4E+02 0.0029 22.9 4.2 7 52-58 23-29 (146)
253 PF07010 Endomucin: Endomucin; 24.8 3.4E+02 0.0074 22.9 6.7 29 48-76 183-211 (259)
254 PF11446 DUF2897: Protein of u 24.7 1.1E+02 0.0024 19.7 3.1 11 52-62 5-15 (55)
255 KOG4185 Predicted E3 ubiquitin 24.6 13 0.00028 31.9 -1.7 50 125-174 207-267 (296)
256 PF05191 ADK_lid: Adenylate ki 24.5 38 0.00082 19.8 0.8 31 143-175 3-33 (36)
257 PF15179 Myc_target_1: Myc tar 24.5 2.7E+02 0.0059 22.7 5.8 17 60-76 30-46 (197)
258 KOG1512 PHD Zn-finger protein 24.4 31 0.00067 30.0 0.6 32 126-158 315-346 (381)
259 PF10083 DUF2321: Uncharacteri 24.2 40 0.00087 26.6 1.1 45 129-176 8-52 (158)
260 PF07204 Orthoreo_P10: Orthore 24.2 67 0.0015 23.2 2.1 28 52-80 41-68 (98)
261 PF06750 DiS_P_DiS: Bacterial 24.0 79 0.0017 22.5 2.5 39 125-176 33-71 (92)
262 PF02723 NS3_envE: Non-structu 24.0 1.8E+02 0.0039 20.4 4.2 31 46-76 10-40 (82)
263 PF06677 Auto_anti-p27: Sjogre 23.9 55 0.0012 19.8 1.4 19 157-175 11-29 (41)
264 KOG2231 Predicted E3 ubiquitin 23.9 56 0.0012 31.8 2.2 46 127-176 2-54 (669)
265 PF05283 MGC-24: Multi-glycosy 23.7 1.7E+02 0.0036 23.9 4.6 22 44-65 154-175 (186)
266 PF07219 HemY_N: HemY protein 23.4 1.2E+02 0.0026 21.9 3.5 13 51-63 15-27 (108)
267 PRK11486 flagellar biosynthesi 23.4 1.5E+02 0.0033 22.5 4.0 7 54-60 20-26 (124)
268 KOG0824 Predicted E3 ubiquitin 23.3 26 0.00057 30.6 -0.1 47 123-172 103-149 (324)
269 PF06679 DUF1180: Protein of u 23.0 2.4E+02 0.0052 22.4 5.3 40 45-85 90-130 (163)
270 PF06676 DUF1178: Protein of u 22.9 42 0.00092 26.3 1.0 26 147-177 10-46 (148)
271 PF14584 DUF4446: Protein of u 22.8 1.4E+02 0.0031 23.3 4.0 35 107-143 80-114 (151)
272 PHA03286 envelope glycoprotein 22.8 1.3E+02 0.0028 28.0 4.1 19 64-82 402-420 (492)
273 PF03911 Sec61_beta: Sec61beta 22.7 1.3E+02 0.0029 18.0 3.0 23 44-66 14-36 (41)
274 PF13908 Shisa: Wnt and FGF in 22.4 58 0.0013 25.9 1.7 11 50-60 80-90 (179)
275 PF09753 Use1: Membrane fusion 22.1 99 0.0022 26.0 3.2 9 66-74 241-249 (251)
276 KOG4323 Polycomb-like PHD Zn-f 21.8 52 0.0011 30.6 1.5 48 124-171 167-223 (464)
277 PF07245 Phlebovirus_G2: Phleb 21.8 1.2E+02 0.0026 28.7 3.9 19 56-74 474-492 (507)
278 PF06143 Baculo_11_kDa: Baculo 21.4 1.7E+02 0.0037 20.6 3.7 26 47-72 31-56 (84)
279 KOG4443 Putative transcription 21.4 43 0.00094 32.4 0.9 27 147-173 41-72 (694)
280 COG4847 Uncharacterized protei 21.3 98 0.0021 22.4 2.5 35 126-162 7-41 (103)
281 PHA03164 hypothetical protein; 21.2 1.5E+02 0.0032 20.6 3.2 14 53-66 60-73 (88)
282 TIGR03493 cellullose_BcsF cell 21.0 1.4E+02 0.003 19.8 3.0 22 54-75 6-27 (62)
283 PF05502 Dynactin_p62: Dynacti 20.9 48 0.001 31.0 1.1 15 125-139 26-40 (483)
284 PF05715 zf-piccolo: Piccolo Z 20.9 46 0.001 21.9 0.7 12 163-174 2-13 (61)
285 TIGR01478 STEVOR variant surfa 20.7 1.4E+02 0.0031 25.9 3.8 7 70-76 280-286 (295)
286 COG3190 FliO Flagellar biogene 20.5 3.5E+02 0.0076 20.9 5.6 28 49-76 21-48 (137)
287 PF04834 Adeno_E3_14_5: Early 20.4 1.9E+02 0.0042 20.9 3.9 23 46-68 18-40 (97)
288 COG1645 Uncharacterized Zn-fin 20.3 42 0.00092 25.7 0.5 6 165-170 46-51 (131)
289 KOG2678 Predicted membrane pro 20.3 1.7E+02 0.0038 24.5 4.1 23 54-76 218-240 (244)
290 PF05151 PsbM: Photosystem II 20.2 1.9E+02 0.004 16.5 3.2 16 52-67 5-20 (31)
291 PTZ00370 STEVOR; Provisional 20.1 1.4E+02 0.0031 26.0 3.7 7 70-76 276-282 (296)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.8e-21 Score=168.02 Aligned_cols=78 Identities=33% Similarity=0.828 Sum_probs=66.9
Q ss_pred CCccHHHHhcCCceeeccCCCCCCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcC-CCCcccccccccccc
Q 027813 100 SGIKKKALRNFPVVNYSTELKLPGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH-SSCPKCRRCLIETCE 178 (218)
Q Consensus 100 ~~~~~~~i~~lp~~~~~~~~~~~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-~~CP~CR~~l~~~~~ 178 (218)
.++.+..++++|...|......... ..|+||||+|+.||.+|+|| |+|.||..|||+||..+ ..||+|++++....+
T Consensus 205 ~r~~k~~l~~~p~~~f~~~~~~~~~-~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~ 282 (348)
T KOG4628|consen 205 NRLIKRLLKKLPVRTFTKGDDEDAT-DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSG 282 (348)
T ss_pred hhhHHHHHhhCCcEEeccccccCCC-ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCCC
Confidence 4577888999999999886554444 79999999999999999999 99999999999999776 459999998876644
Q ss_pred c
Q 027813 179 N 179 (218)
Q Consensus 179 ~ 179 (218)
.
T Consensus 283 ~ 283 (348)
T KOG4628|consen 283 S 283 (348)
T ss_pred C
Confidence 4
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.66 E-value=3.3e-17 Score=102.58 Aligned_cols=44 Identities=55% Similarity=1.234 Sum_probs=40.6
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCR 170 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR 170 (218)
++|+||+++|..++.+..++ |+|.||.+||..|++++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999999999999 999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.46 E-value=4.6e-14 Score=118.06 Aligned_cols=76 Identities=34% Similarity=0.642 Sum_probs=58.0
Q ss_pred CCCccHHHHhcCCceeeccCCC-CCCCCcccccccccccCCC----ceEEcCCCCcccChHHHHHHHhcCCCCccccccc
Q 027813 99 SSGIKKKALRNFPVVNYSTELK-LPGLDTECVICLSNFLPGE----RVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCL 173 (218)
Q Consensus 99 ~~~~~~~~i~~lp~~~~~~~~~-~~~~~~~CaICle~f~~~~----~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l 173 (218)
.++..+..++.+|.+....+.. ....+.+|+||++.+...+ .+.+++.|+|.||.+||..|++.+.+||+||..+
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 3455778888999887654322 2344689999999987643 1334545999999999999999999999999977
Q ss_pred c
Q 027813 174 I 174 (218)
Q Consensus 174 ~ 174 (218)
.
T Consensus 227 ~ 227 (238)
T PHA02929 227 I 227 (238)
T ss_pred e
Confidence 6
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.46 E-value=5.8e-14 Score=97.27 Aligned_cols=46 Identities=37% Similarity=0.923 Sum_probs=36.2
Q ss_pred CCcccccccccccCC----------CceEEcCCCCcccChHHHHHHHhcCCCCcccc
Q 027813 124 LDTECVICLSNFLPG----------ERVRMLPICNHGFHVRCIDKWLRSHSSCPKCR 170 (218)
Q Consensus 124 ~~~~CaICle~f~~~----------~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR 170 (218)
.++.|+||+++|.+. -.+...+ |||.||.+||.+||+.+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 345799999999322 2344456 999999999999999999999998
No 5
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=5.1e-14 Score=119.20 Aligned_cols=52 Identities=48% Similarity=1.149 Sum_probs=46.9
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHh-cCCCCccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR-SHSSCPKCRRCLIE 175 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~~CP~CR~~l~~ 175 (218)
+.+-+|+|||++|-++|++++|| |+|.||..|++.|+. -+..||+||..+.+
T Consensus 321 ~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 34479999999999999999999 999999999999998 46679999998865
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=6.5e-13 Score=115.29 Aligned_cols=66 Identities=33% Similarity=0.841 Sum_probs=50.8
Q ss_pred HHHhcCCceeeccCCCCCCCCccccccccc-ccCC---------CceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 105 KALRNFPVVNYSTELKLPGLDTECVICLSN-FLPG---------ERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 105 ~~i~~lp~~~~~~~~~~~~~~~~CaICle~-f~~~---------~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
..-+.+|++... +...+|..|.||+++ |..+ .+.+.|| |||+||-+|+..|++++++||+||.+++
T Consensus 270 dl~~~~~t~t~e---ql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 270 DLNAMYPTATEE---QLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred HHHhhcchhhhh---hhcCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccc
Confidence 334445654433 335677899999999 5544 2457899 9999999999999999999999999944
No 7
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.15 E-value=3.6e-11 Score=74.13 Aligned_cols=44 Identities=55% Similarity=1.201 Sum_probs=37.3
Q ss_pred ccccccccccCCCceEEcCCCCcccChHHHHHHHhc-CCCCccccccc
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS-HSSCPKCRRCL 173 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l 173 (218)
+|+||++.+ .+.+...+ |+|.||..|++.|++. +..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 34566666 9999999999999987 77899998764
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.14 E-value=3.7e-11 Score=77.03 Aligned_cols=46 Identities=39% Similarity=0.873 Sum_probs=39.5
Q ss_pred CcccccccccccCCCceEEcCCCCcc-cChHHHHHHHhcCCCCcccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHG-FHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
+..|.||++.... +..+| |||. |+..|+..|++.+..||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4689999998654 77889 9999 999999999999999999999875
No 9
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.2e-10 Score=98.57 Aligned_cols=51 Identities=31% Similarity=0.734 Sum_probs=44.1
Q ss_pred CCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
......|.+|||.-+. ..-+| |||+||+.||..|...+..||+||..+.+.
T Consensus 236 ~~a~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 4556799999998654 55788 999999999999999999999999988765
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.10 E-value=7.9e-11 Score=71.60 Aligned_cols=39 Identities=41% Similarity=1.037 Sum_probs=33.0
Q ss_pred cccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccc
Q 027813 128 CVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKC 169 (218)
Q Consensus 128 CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~C 169 (218)
|+||++.+.+ .+..++ |||.|+.+||..|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998866 446777 99999999999999998899998
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.10 E-value=1.6e-10 Score=93.39 Aligned_cols=50 Identities=34% Similarity=0.717 Sum_probs=40.2
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhc----------------CCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS----------------HSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~----------------~~~CP~CR~~l~~~ 176 (218)
.++.+|+||++.+++ ..+++ |||.||+.||..|+.. +..||+||..+...
T Consensus 16 ~~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 16 GGDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 345799999998854 44577 9999999999999852 34799999988654
No 12
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.09 E-value=7.3e-11 Score=83.06 Aligned_cols=52 Identities=38% Similarity=0.813 Sum_probs=40.1
Q ss_pred CCccccccccccc--------CCCc-eEEcCCCCcccChHHHHHHHhc---CCCCccccccccc
Q 027813 124 LDTECVICLSNFL--------PGER-VRMLPICNHGFHVRCIDKWLRS---HSSCPKCRRCLIE 175 (218)
Q Consensus 124 ~~~~CaICle~f~--------~~~~-vr~lp~C~H~FH~~CI~~Wl~~---~~~CP~CR~~l~~ 175 (218)
.++.|.||...|+ +||. ..++-.|+|.||.+||.+|+.. +..||+||+...-
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 4679999999996 2333 2344459999999999999975 4679999997653
No 13
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.8e-10 Score=94.67 Aligned_cols=51 Identities=29% Similarity=0.623 Sum_probs=40.3
Q ss_pred CCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcC---CCCcccccccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH---SSCPKCRRCLIET 176 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~---~~CP~CR~~l~~~ 176 (218)
++...+|.|||+.-++ .| ++. |||.||+-||.+||..+ +.||+|+..+...
T Consensus 44 ~~~~FdCNICLd~akd--PV-vTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD--PV-VTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCCceeeeeeccccCC--CE-Eee-cccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 4667899999998433 44 445 99999999999999763 4599999877665
No 14
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.2e-10 Score=107.16 Aligned_cols=53 Identities=36% Similarity=0.912 Sum_probs=46.6
Q ss_pred CCCcccccccccccCCCc--eEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGER--VRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~--vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
..+..|+||+|++..++. .+.++ |+|+||..|+..|++++++||.||..+...
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDY 343 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence 446899999999988765 67899 999999999999999999999999955544
No 15
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.97 E-value=4.4e-10 Score=70.15 Aligned_cols=44 Identities=32% Similarity=0.824 Sum_probs=38.6
Q ss_pred ccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccc
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRR 171 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~ 171 (218)
.|.||+++|.+....++++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 5999999996666788888 9999999999999866778999985
No 16
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.96 E-value=3.5e-10 Score=77.84 Aligned_cols=51 Identities=33% Similarity=0.846 Sum_probs=39.1
Q ss_pred cccccccccc-----------cCCCce-EEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 126 TECVICLSNF-----------LPGERV-RMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 126 ~~CaICle~f-----------~~~~~v-r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
+.|+||...| ..+++. ...-.|+|.||.+||.+||..+..||++|+..+-.
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 5777777766 234433 23333999999999999999999999999987644
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.95 E-value=4.3e-10 Score=92.05 Aligned_cols=52 Identities=33% Similarity=0.782 Sum_probs=39.4
Q ss_pred CCCcccccccccccCC----C-ceEEcCCCCcccChHHHHHHHhcC------CCCcccccccc
Q 027813 123 GLDTECVICLSNFLPG----E-RVRMLPICNHGFHVRCIDKWLRSH------SSCPKCRRCLI 174 (218)
Q Consensus 123 ~~~~~CaICle~f~~~----~-~vr~lp~C~H~FH~~CI~~Wl~~~------~~CP~CR~~l~ 174 (218)
..+.+|+||+|..-.. + .-.+|+.|+|.||..||..|.+.+ .+||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4458999999986332 1 234566699999999999999753 35999998754
No 18
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=7.4e-10 Score=87.64 Aligned_cols=53 Identities=26% Similarity=0.599 Sum_probs=43.6
Q ss_pred CCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
...-..|+|||+.|.+... +-.+|||+|+++||..-++....||+||+.+..+
T Consensus 128 ~~~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred cccccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 3445789999999977433 4344999999999999999999999999877654
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.87 E-value=1.4e-09 Score=66.64 Aligned_cols=39 Identities=46% Similarity=1.119 Sum_probs=33.2
Q ss_pred cccccccccCCCceEEcCCCCcccChHHHHHHHh--cCCCCccc
Q 027813 128 CVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR--SHSSCPKC 169 (218)
Q Consensus 128 CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~--~~~~CP~C 169 (218)
|+||++.+... +++++ |||.|+..||..|++ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998663 35788 999999999999998 45679998
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.86 E-value=2e-09 Score=63.93 Aligned_cols=38 Identities=45% Similarity=1.180 Sum_probs=32.4
Q ss_pred cccccccccCCCceEEcCCCCcccChHHHHHHHh-cCCCCccc
Q 027813 128 CVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR-SHSSCPKC 169 (218)
Q Consensus 128 CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~~CP~C 169 (218)
|+||++.. .....++ |+|.||..|++.|++ .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999883 4477788 999999999999998 56679987
No 21
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.77 E-value=5.6e-09 Score=64.46 Aligned_cols=38 Identities=39% Similarity=0.968 Sum_probs=29.2
Q ss_pred cccccccccCCCceEEcCCCCcccChHHHHHHHhcC----CCCccc
Q 027813 128 CVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH----SSCPKC 169 (218)
Q Consensus 128 CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~~CP~C 169 (218)
|+||++-|.+ ...|+ |||.|+..||..|.+.. ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999976 66788 99999999999999663 359987
No 22
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.1e-09 Score=74.73 Aligned_cols=52 Identities=37% Similarity=0.797 Sum_probs=39.3
Q ss_pred CCCcccccccccccC--------CCc-eEEcCCCCcccChHHHHHHHhc---CCCCcccccccc
Q 027813 123 GLDTECVICLSNFLP--------GER-VRMLPICNHGFHVRCIDKWLRS---HSSCPKCRRCLI 174 (218)
Q Consensus 123 ~~~~~CaICle~f~~--------~~~-vr~lp~C~H~FH~~CI~~Wl~~---~~~CP~CR~~l~ 174 (218)
..++.|-||.-.|.. ||. ..++-.|.|.||.+||.+|+.. +..||+||+...
T Consensus 18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 445689999998842 333 3345569999999999999965 445999999764
No 23
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.70 E-value=1.8e-08 Score=67.21 Aligned_cols=45 Identities=31% Similarity=0.506 Sum_probs=39.1
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
..|+||++.+.+ ..+++ |||+|...||..|++.+.+||+|+..+.
T Consensus 2 ~~Cpi~~~~~~~---Pv~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKD---PVILP-SGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCC---CEECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 469999999866 34677 9999999999999998889999998774
No 24
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=7.5e-09 Score=86.80 Aligned_cols=51 Identities=29% Similarity=0.632 Sum_probs=42.0
Q ss_pred CCCcccccccccccCCC-------ceEEcCCCCcccChHHHHHHH--hcCCCCcccccccc
Q 027813 123 GLDTECVICLSNFLPGE-------RVRMLPICNHGFHVRCIDKWL--RSHSSCPKCRRCLI 174 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~-------~vr~lp~C~H~FH~~CI~~Wl--~~~~~CP~CR~~l~ 174 (218)
-++..|+||-..+.... +...|. |+|+||..||.-|- .++++||.|+..+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 45679999999886654 567788 99999999999995 56889999976554
No 25
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.4e-08 Score=73.37 Aligned_cols=52 Identities=29% Similarity=0.782 Sum_probs=38.3
Q ss_pred CCCccccccccccc------------CCCce-EEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 123 GLDTECVICLSNFL------------PGERV-RMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 123 ~~~~~CaICle~f~------------~~~~v-r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
-.-+.|+||...+- ..++. ...--|+|.||.+||.+||+.+..||+|.++-+
T Consensus 44 i~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 44 IVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred eeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 34578999987661 12222 233349999999999999999999999977543
No 26
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.3e-08 Score=88.27 Aligned_cols=50 Identities=32% Similarity=0.796 Sum_probs=39.0
Q ss_pred CcccccccccccCC---Cc-----------eEEcCCCCcccChHHHHHHHhc-CCCCccccccccc
Q 027813 125 DTECVICLSNFLPG---ER-----------VRMLPICNHGFHVRCIDKWLRS-HSSCPKCRRCLIE 175 (218)
Q Consensus 125 ~~~CaICle~f~~~---~~-----------vr~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~ 175 (218)
...|+||+.++.-- .. -.++| |+|+||..|+..|+.. +-.||+||..|.+
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 46899999987421 11 23458 9999999999999985 5589999998864
No 27
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.59 E-value=2.9e-08 Score=88.93 Aligned_cols=49 Identities=31% Similarity=0.602 Sum_probs=41.3
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
.....|+||++.|.. ..+++ |+|.||..||..|+..+..||+||..+..
T Consensus 24 e~~l~C~IC~d~~~~---Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDV---PVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhC---ccCCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 345799999999855 34677 99999999999999988889999987654
No 28
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.56 E-value=5.4e-08 Score=62.06 Aligned_cols=42 Identities=24% Similarity=0.711 Sum_probs=32.8
Q ss_pred ccccccccccCCCceEEcCCCC-----cccChHHHHHHHhc--CCCCcccc
Q 027813 127 ECVICLSNFLPGERVRMLPICN-----HGFHVRCIDKWLRS--HSSCPKCR 170 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~-----H~FH~~CI~~Wl~~--~~~CP~CR 170 (218)
.|.||++ +..++...+.| |. |.+|..|+..|+.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 44444555788 85 99999999999955 44799995
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.47 E-value=1.1e-07 Score=58.85 Aligned_cols=38 Identities=37% Similarity=0.814 Sum_probs=22.7
Q ss_pred cccccccccCCC-ceEEcCCCCcccChHHHHHHHhcC----CCCc
Q 027813 128 CVICLSNFLPGE-RVRMLPICNHGFHVRCIDKWLRSH----SSCP 167 (218)
Q Consensus 128 CaICle~f~~~~-~vr~lp~C~H~FH~~CI~~Wl~~~----~~CP 167 (218)
|+||.| |...+ ...+|+ |||+|..+||+.|++++ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 86544 457799 99999999999999754 2476
No 30
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=9.6e-08 Score=80.12 Aligned_cols=51 Identities=27% Similarity=0.626 Sum_probs=41.9
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHH-HHhcCCC-Cccccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDK-WLRSHSS-CPKCRRCLIETC 177 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~-Wl~~~~~-CP~CR~~l~~~~ 177 (218)
..+..|+||++.... ...++ |||+|+..||.. |-+++.- ||+||+...++.
T Consensus 213 ~~d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 456799999998654 55678 999999999999 9877665 999999877653
No 31
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.33 E-value=1.1e-07 Score=65.14 Aligned_cols=51 Identities=31% Similarity=0.704 Sum_probs=24.2
Q ss_pred CcccccccccccCCC-ce-EEc--CCCCcccChHHHHHHHhc----C-------CCCccccccccc
Q 027813 125 DTECVICLSNFLPGE-RV-RML--PICNHGFHVRCIDKWLRS----H-------SSCPKCRRCLIE 175 (218)
Q Consensus 125 ~~~CaICle~f~~~~-~v-r~l--p~C~H~FH~~CI~~Wl~~----~-------~~CP~CR~~l~~ 175 (218)
+.+|.||++.+..++ .. .+- +.|++.||..|+..||+. + ..||.|+..+.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 368999999876333 22 222 359999999999999953 1 149999988753
No 32
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.28 E-value=1.5e-07 Score=90.37 Aligned_cols=52 Identities=37% Similarity=0.791 Sum_probs=38.3
Q ss_pred CCCcccccccccccCCCc---eEEcCCCCcccChHHHHHHHhc--CCCCcccccccc
Q 027813 123 GLDTECVICLSNFLPGER---VRMLPICNHGFHVRCIDKWLRS--HSSCPKCRRCLI 174 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~---vr~lp~C~H~FH~~CI~~Wl~~--~~~CP~CR~~l~ 174 (218)
.+.++||||......-|. -...+.|+|.||..|+..|++. +.+||+||.++.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 355899999988763221 1122339999999999999976 567999998764
No 33
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.26 E-value=3.3e-07 Score=81.88 Aligned_cols=50 Identities=36% Similarity=0.820 Sum_probs=39.9
Q ss_pred CCCcccccccccccCCC-ceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 123 GLDTECVICLSNFLPGE-RVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~-~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
.+..+|+||||.+...- .++... |.|.||..|+..| ...+||+||....+
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w--~~~scpvcR~~q~p 223 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKW--WDSSCPVCRYCQSP 223 (493)
T ss_pred ccCCCcchhHhhcCccccceeeee-cccccchHHHhhc--ccCcChhhhhhcCc
Confidence 34579999999997654 334445 9999999999999 56789999987763
No 34
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=8.5e-07 Score=80.58 Aligned_cols=48 Identities=31% Similarity=0.569 Sum_probs=37.6
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhc-----CCCCcccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS-----HSSCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~-----~~~CP~CR~~l~~~ 176 (218)
+..|+|||++... ...+. |||+||..||-+++.. ...||+||..+-..
T Consensus 186 ~~~CPICL~~~~~---p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCc---ccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 6799999998644 22334 9999999999998854 34699999988764
No 35
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.17 E-value=1.4e-06 Score=75.38 Aligned_cols=51 Identities=24% Similarity=0.527 Sum_probs=37.5
Q ss_pred CcccccccccccCCCc--eEEcCCCCcccChHHHHHHHhc-CCCCcccccccccc
Q 027813 125 DTECVICLSNFLPGER--VRMLPICNHGFHVRCIDKWLRS-HSSCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle~f~~~~~--vr~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~~ 176 (218)
+..|++|..+--.+.. +.+.+ |||.||..||+..+.. ...||.|+..+...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 4589999996333333 33335 9999999999996644 55799999887755
No 36
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.2e-06 Score=77.10 Aligned_cols=44 Identities=32% Similarity=0.929 Sum_probs=33.4
Q ss_pred cccccccccccCCC-ceEEcCCCCcccChHHHHHHHhc---CCCCcccc
Q 027813 126 TECVICLSNFLPGE-RVRMLPICNHGFHVRCIDKWLRS---HSSCPKCR 170 (218)
Q Consensus 126 ~~CaICle~f~~~~-~vr~lp~C~H~FH~~CI~~Wl~~---~~~CP~CR 170 (218)
..|.|| +++.+.+ .+--.-.|||+||..|+.+|+.. +.+||+|+
T Consensus 5 A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 589999 5555443 44334449999999999999976 34699998
No 37
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.09 E-value=1.1e-06 Score=76.26 Aligned_cols=48 Identities=33% Similarity=0.719 Sum_probs=42.7
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
-..|-||.|=|.. ..++| |+|.||.-||..+|..+..||.|+..+.|.
T Consensus 23 lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 23 LLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccchh
Confidence 3589999998866 55778 999999999999999999999999988876
No 38
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.08 E-value=3.7e-06 Score=58.06 Aligned_cols=48 Identities=25% Similarity=0.429 Sum_probs=37.0
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhc-CCCCcccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS-HSSCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~~ 176 (218)
...|+|+.+-+.+ ..+++ +||.|-..||..|++. +.+||+|+..+...
T Consensus 4 ~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 3589999999866 55788 9999999999999988 88999999887754
No 39
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=3.7e-06 Score=73.49 Aligned_cols=53 Identities=34% Similarity=0.614 Sum_probs=42.7
Q ss_pred CCCcccccccccccCCCceEEcCCCCcc-cChHHHHHHHhcCCCCccccccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHG-FHVRCIDKWLRSHSSCPKCRRCLIETCEN 179 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~~~~~ 179 (218)
++..+|.|||.+-.+ ..+|| |.|. .|..|-+.-.-.+..||+||+.+.+.-+-
T Consensus 288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i 341 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEI 341 (349)
T ss_pred cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHhhhee
Confidence 446899999999655 67899 9997 68889888766677899999998876433
No 40
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.00 E-value=2.7e-06 Score=72.35 Aligned_cols=50 Identities=28% Similarity=0.497 Sum_probs=41.7
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIETC 177 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~ 177 (218)
....|-||-+-|.. ...++ |||.||.-||...|..+..||+||.+..+..
T Consensus 24 s~lrC~IC~~~i~i---p~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~esr 73 (391)
T COG5432 24 SMLRCRICDCRISI---PCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCESR 73 (391)
T ss_pred hHHHhhhhhheeec---ceecc-cccchhHHHHHHHhcCCCCCccccccHHhhh
Confidence 34689999887754 33456 9999999999999999999999999877663
No 41
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.3e-06 Score=72.30 Aligned_cols=44 Identities=36% Similarity=0.821 Sum_probs=38.7
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCR 170 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR 170 (218)
.+...|+||++.|... ++++ |+|.|+..|+..|+.....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 4557999999999885 7888 999999999999988556799999
No 42
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=4.6e-06 Score=73.91 Aligned_cols=49 Identities=35% Similarity=0.794 Sum_probs=38.3
Q ss_pred CCcccccccccccC-CCceEEcCCCCcccChHHHHHHHhc--CCCCcccccc
Q 027813 124 LDTECVICLSNFLP-GERVRMLPICNHGFHVRCIDKWLRS--HSSCPKCRRC 172 (218)
Q Consensus 124 ~~~~CaICle~f~~-~~~vr~lp~C~H~FH~~CI~~Wl~~--~~~CP~CR~~ 172 (218)
....|+|||++|.. +++..+.++|||.|..+||+.||-+ ...||.|...
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 34689999999964 4555555669999999999999953 3459999654
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.85 E-value=3.2e-06 Score=56.29 Aligned_cols=50 Identities=28% Similarity=0.520 Sum_probs=23.8
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIETCENI 180 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~~~~ 180 (218)
-.|++|.+-++. .+.+.. |.|+|++.||..-+. ..||+|+.+...++-++
T Consensus 8 LrCs~C~~~l~~--pv~l~~-CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~ 57 (65)
T PF14835_consen 8 LRCSICFDILKE--PVCLGG-CEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQI 57 (65)
T ss_dssp TS-SSS-S--SS---B---S-SS--B-TTTGGGGTT--TB-SSS--B-S-SS---
T ss_pred cCCcHHHHHhcC--Cceecc-CccHHHHHHhHHhcC--CCCCCcCChHHHHHHHh
Confidence 479999988655 343444 999999999988554 34999999988775443
No 44
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.84 E-value=2.9e-06 Score=80.37 Aligned_cols=52 Identities=23% Similarity=0.443 Sum_probs=43.7
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
....|++||..+.++...-..+ |+|.||.+||+.|-+.-.+||+||..+.+.
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhee
Confidence 3467999999887776655566 999999999999999999999999877644
No 45
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=6.6e-06 Score=67.70 Aligned_cols=58 Identities=21% Similarity=0.633 Sum_probs=47.9
Q ss_pred CCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhc--------CCCCccccccccccccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS--------HSSCPKCRRCLIETCENIV 181 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~--------~~~CP~CR~~l~~~~~~~~ 181 (218)
.+....|..|-..+..+|.+|.. |.|+||++|+++|-.. ...||.|..++++.-..+.
T Consensus 47 sDY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nlvs 112 (299)
T KOG3970|consen 47 SDYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVS 112 (299)
T ss_pred cCCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccc
Confidence 45567899999999999999876 9999999999999754 2359999999987654443
No 46
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.79 E-value=6.9e-06 Score=70.19 Aligned_cols=51 Identities=29% Similarity=0.781 Sum_probs=43.1
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhc-----------------------CCCCcccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS-----------------------HSSCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~-----------------------~~~CP~CR~~l~~~ 176 (218)
...|.|||--|..++...+++ |.|.||..|+.++|.. +..||+||..+...
T Consensus 115 ~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 358999999999999999999 9999999999988730 12499999988765
No 47
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=1.2e-05 Score=70.95 Aligned_cols=51 Identities=39% Similarity=0.851 Sum_probs=39.0
Q ss_pred CCCcccccccccccCCC----ceEEcCCCCcccChHHHHHHH--hc-----CCCCccccccc
Q 027813 123 GLDTECVICLSNFLPGE----RVRMLPICNHGFHVRCIDKWL--RS-----HSSCPKCRRCL 173 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~----~vr~lp~C~H~FH~~CI~~Wl--~~-----~~~CP~CR~~l 173 (218)
..+.+|.||++...... ...+||.|.|.|+..||+.|- .+ .+.||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 45689999999875533 134567799999999999997 33 35799999743
No 48
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=6.3e-06 Score=71.88 Aligned_cols=51 Identities=37% Similarity=0.683 Sum_probs=42.0
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhc-CCCCccccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS-HSSCPKCRRCLIETC 177 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~~~ 177 (218)
.+..|+|||+-++. -+..+.|.|-|+.+||..-++. +++||.||+.+....
T Consensus 42 ~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 42 IQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 45789999988765 3455669999999999999865 778999999988663
No 49
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.51 E-value=3.7e-05 Score=58.73 Aligned_cols=36 Identities=22% Similarity=0.504 Sum_probs=31.0
Q ss_pred CCcccccccccccCCCceEEcCCCC------cccChHHHHHHH
Q 027813 124 LDTECVICLSNFLPGERVRMLPICN------HGFHVRCIDKWL 160 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~------H~FH~~CI~~Wl 160 (218)
...+|+||++.+..++.+..++ || |+||.+|+.+|-
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHH
Confidence 3469999999998877777777 75 999999999994
No 50
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.40 E-value=0.0001 Score=73.97 Aligned_cols=65 Identities=26% Similarity=0.613 Sum_probs=49.9
Q ss_pred cCCceeeccCCCCCCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcC----------CCCcccccccc
Q 027813 109 NFPVVNYSTELKLPGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH----------SSCPKCRRCLI 174 (218)
Q Consensus 109 ~lp~~~~~~~~~~~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----------~~CP~CR~~l~ 174 (218)
-+|-...+++...++.++.|.||+.+--.....+.|. |+|+||-+|...-|.++ -+||+|+..+.
T Consensus 3470 CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3470 CLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 4565555444445678899999999877667778888 99999999998877653 26999988654
No 51
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.36 E-value=0.00013 Score=64.79 Aligned_cols=54 Identities=31% Similarity=0.698 Sum_probs=43.3
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhc--CCCCcccccccccccccccCC
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS--HSSCPKCRRCLIETCENIVGS 183 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~--~~~CP~CR~~l~~~~~~~~~~ 183 (218)
.-|-||-|. +..|++-| |||..|..|+..|-.. .++||.||..+-....-+++.
T Consensus 370 eLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~viid~ 425 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVIIDP 425 (563)
T ss_pred HHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccccceeeec
Confidence 569999876 34588899 9999999999999744 578999999887665555544
No 52
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=7.3e-05 Score=58.64 Aligned_cols=42 Identities=33% Similarity=0.757 Sum_probs=33.3
Q ss_pred CceeeccCCCCCCCCcccccccccccCCCceEEcCCCCcccChH
Q 027813 111 PVVNYSTELKLPGLDTECVICLSNFLPGERVRMLPICNHGFHVR 154 (218)
Q Consensus 111 p~~~~~~~~~~~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~ 154 (218)
|...|++.. ..+...||.||||++..+|.+-.|| |-.+||+.
T Consensus 164 PrlsYNdDV-L~ddkGECvICLEdL~~GdtIARLP-CLCIYHK~ 205 (205)
T KOG0801|consen 164 PRLSYNDDV-LKDDKGECVICLEDLEAGDTIARLP-CLCIYHKQ 205 (205)
T ss_pred cccccccch-hcccCCcEEEEhhhccCCCceeccc-eEEEeecC
Confidence 555665432 2345579999999999999999999 99999973
No 53
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0001 Score=63.25 Aligned_cols=48 Identities=29% Similarity=0.505 Sum_probs=38.4
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhc-CCCCcccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS-HSSCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~~ 176 (218)
..+|+||+..-.- ...|+ |+|.|+--||.--.++ ..+|++||.++.+.
T Consensus 7 ~~eC~IC~nt~n~---Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNC---PVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCc---Ccccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 4699999987433 34567 9999999999988766 45699999988765
No 54
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=6.7e-05 Score=48.21 Aligned_cols=47 Identities=30% Similarity=0.658 Sum_probs=31.3
Q ss_pred CcccccccccccCCCceEEcCCCCcc-cChHH-HHHHHhcCCCCccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHG-FHVRC-IDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~-FH~~C-I~~Wl~~~~~CP~CR~~l~~ 175 (218)
+++|.||+|.-. |.| |.-|||+ .+-+| +..|-..+..||+||+++.+
T Consensus 7 ~dECTICye~pv--dsV--lYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPV--DSV--LYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcc--hHH--HHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 379999998733 233 3239998 34445 34444467889999998753
No 55
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=9.4e-05 Score=70.34 Aligned_cols=46 Identities=22% Similarity=0.657 Sum_probs=35.9
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhc-CCCCccccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS-HSSCPKCRRCLIE 175 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~ 175 (218)
-.|++|-..+++ +.+.. |+|+||..||..-+.. +..||.|...+-.
T Consensus 644 LkCs~Cn~R~Kd---~vI~k-C~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 644 LKCSVCNTRWKD---AVITK-CGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred eeCCCccCchhh---HHHHh-cchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 579999977655 33344 9999999999999855 6679999877643
No 56
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.17 E-value=0.00013 Score=64.58 Aligned_cols=45 Identities=40% Similarity=0.945 Sum_probs=37.5
Q ss_pred CcccccccccccC-CCceEEcCCCCcccChHHHHHHHhcC--CCCcccc
Q 027813 125 DTECVICLSNFLP-GERVRMLPICNHGFHVRCIDKWLRSH--SSCPKCR 170 (218)
Q Consensus 125 ~~~CaICle~f~~-~~~vr~lp~C~H~FH~~CI~~Wl~~~--~~CP~CR 170 (218)
+--|-.|-+.+-. ++.+.-|| |.|+||..|+...|.++ .+||.||
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3579999988854 35677899 99999999999999775 4699998
No 57
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=97.01 E-value=0.00052 Score=43.20 Aligned_cols=40 Identities=33% Similarity=0.879 Sum_probs=27.4
Q ss_pred cccccccccCCCceEEcCCCC-----cccChHHHHHHHhc--CCCCccc
Q 027813 128 CVICLSNFLPGERVRMLPICN-----HGFHVRCIDKWLRS--HSSCPKC 169 (218)
Q Consensus 128 CaICle~f~~~~~vr~lp~C~-----H~FH~~CI~~Wl~~--~~~CP~C 169 (218)
|-||+++-..++ .-+.| |+ -..|..|+..|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779999877766 33466 74 47899999999964 5679887
No 58
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00037 Score=62.83 Aligned_cols=49 Identities=35% Similarity=0.880 Sum_probs=41.8
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
..+.+|.||+.-+.. ...+| |||.|+..||++-+.....||.||..+.+
T Consensus 82 ~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 456799999888765 55678 99999999999987877889999999985
No 59
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.93 E-value=0.00057 Score=44.85 Aligned_cols=42 Identities=26% Similarity=0.592 Sum_probs=27.7
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhc--CCCCcc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS--HSSCPK 168 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~--~~~CP~ 168 (218)
....|+|.+..|++ .++-.. |+|.|-++.|..|+++ ...||+
T Consensus 10 ~~~~CPiT~~~~~~--PV~s~~-C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED--PVKSKK-CGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS--EEEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhC--CcCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence 44689999999865 566556 9999999999999944 345998
No 60
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.90 E-value=0.00063 Score=61.47 Aligned_cols=51 Identities=31% Similarity=0.671 Sum_probs=41.7
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
+.+..|++|...+.+. +..+. |||.|+..|+..|+..+..||.|+..+...
T Consensus 19 ~~~l~C~~C~~vl~~p--~~~~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDP--VQTTT-CGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred cccccCccccccccCC--CCCCC-CCCcccccccchhhccCcCCcccccccchh
Confidence 4567899999987663 22235 999999999999999999999998877655
No 61
>PHA02862 5L protein; Provisional
Probab=96.73 E-value=0.001 Score=51.28 Aligned_cols=45 Identities=22% Similarity=0.533 Sum_probs=34.3
Q ss_pred cccccccccccCCCceEEcCCCC-----cccChHHHHHHHhc--CCCCccccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICN-----HGFHVRCIDKWLRS--HSSCPKCRRCLIE 175 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~-----H~FH~~CI~~Wl~~--~~~CP~CR~~l~~ 175 (218)
+.|-||+++-++ . .-| |+ ..-|.+|+.+|+.. +.+|++|+.+..-
T Consensus 3 diCWIC~~~~~e--~--~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDE--R--NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCC--C--ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 689999998533 2 345 64 68899999999965 4569999987753
No 62
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.68 E-value=0.00075 Score=49.29 Aligned_cols=32 Identities=28% Similarity=0.635 Sum_probs=26.8
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHH
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCID 157 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~ 157 (218)
.+..|++|-..+.. ....+.| |||+||..|++
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 45689999999977 5566788 99999999975
No 63
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0045 Score=53.84 Aligned_cols=48 Identities=21% Similarity=0.321 Sum_probs=37.1
Q ss_pred CCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRC 172 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~ 172 (218)
+.....|+||+..-++. .+-.+ -|-+||..||..++.++..||+=-.+
T Consensus 297 ~~~~~~CpvClk~r~Np-tvl~v--SGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNP-TVLEV--SGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred CCccccChhHHhccCCC-ceEEe--cceEEeHHHHHHHHHhcCCCCccCCc
Confidence 45567999999887653 33222 69999999999999999999985433
No 64
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.46 E-value=0.0014 Score=63.19 Aligned_cols=50 Identities=36% Similarity=0.770 Sum_probs=38.0
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcC-------CCCcccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH-------SSCPKCRRC 172 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-------~~CP~CR~~ 172 (218)
....+|.||++.+...+.+=--..|.|+||..||..|-++. -.||.|...
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 45579999999998776553333489999999999998542 149999743
No 65
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.36 E-value=0.0034 Score=49.33 Aligned_cols=49 Identities=24% Similarity=0.564 Sum_probs=35.6
Q ss_pred CCCcccccccccccCCCceEEcCCCC--c---ccChHHHHHHHhc--CCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICN--H---GFHVRCIDKWLRS--HSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~--H---~FH~~CI~~Wl~~--~~~CP~CR~~l~~~ 176 (218)
..+..|-||.++.. +. .-| |. . .-|.+|+..|+.. ..+|++|+....-.
T Consensus 6 ~~~~~CRIC~~~~~--~~--~~P-C~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYD--VV--TNY-CNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCC--Cc--cCC-cccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 45579999998853 22 245 64 3 6699999999965 45699998876544
No 66
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.0034 Score=55.23 Aligned_cols=46 Identities=26% Similarity=0.557 Sum_probs=34.7
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
...+.|.||+++... ...+| |||+=+ |...- +...+||+||+.+..
T Consensus 303 ~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIRL 348 (355)
T ss_pred CCCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHHH
Confidence 445789999999766 66889 999955 76664 334459999998753
No 67
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.0061 Score=51.86 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=38.3
Q ss_pred CCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhc--CCCCcccccccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS--HSSCPKCRRCLIET 176 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~--~~~CP~CR~~l~~~ 176 (218)
...+.+|++|-+.=. -.....+ |+|+||--||..=+.. ..+||.|-.+..+-
T Consensus 236 ~t~~~~C~~Cg~~Pt--iP~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPT--IPHVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred ccCCceeeccCCCCC--CCeeecc-ccceeehhhhhhhhcchhhcccCccCCCCcch
Confidence 456789999987632 2334556 9999999999987654 46899997766533
No 68
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.00025 Score=62.75 Aligned_cols=52 Identities=27% Similarity=0.622 Sum_probs=45.3
Q ss_pred CCcccccccccccCC-CceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 124 LDTECVICLSNFLPG-ERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 124 ~~~~CaICle~f~~~-~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
....|+||.+.|+.. +.+..+- |||.+|.+||..||.....||.||+.|...
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 446899999999887 7777777 999999999999999988899999987644
No 69
>PHA03096 p28-like protein; Provisional
Probab=96.18 E-value=0.0023 Score=55.28 Aligned_cols=37 Identities=30% Similarity=0.619 Sum_probs=29.8
Q ss_pred cccccccccccCCC----ceEEcCCCCcccChHHHHHHHhc
Q 027813 126 TECVICLSNFLPGE----RVRMLPICNHGFHVRCIDKWLRS 162 (218)
Q Consensus 126 ~~CaICle~f~~~~----~vr~lp~C~H~FH~~CI~~Wl~~ 162 (218)
.+|.||++...... .-.+|+.|.|.|+..||..|...
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~ 219 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE 219 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh
Confidence 68999999876532 33568889999999999999844
No 70
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.87 E-value=0.011 Score=51.91 Aligned_cols=63 Identities=24% Similarity=0.441 Sum_probs=44.4
Q ss_pred HHhcCCceeeccCCCCCCCCcccccccccccCCCceEEcCCCCcccChHHHHHH--HhcCCCCcccccc
Q 027813 106 ALRNFPVVNYSTELKLPGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKW--LRSHSSCPKCRRC 172 (218)
Q Consensus 106 ~i~~lp~~~~~~~~~~~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~W--l~~~~~CP~CR~~ 172 (218)
.+..-|...-+......++..-|.||-+... ..-++| |+|..+.-|--+- |-.++.||+||..
T Consensus 42 nlsaEPnlttsSaddtDEen~~C~ICA~~~T---Ys~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 42 NLSAEPNLTTSSADDTDEENMNCQICAGSTT---YSARYP-CGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccCCccccccccccccccceeEEecCCce---EEEecc-CCchHHHHHHHHHHHHHhccCCCccccc
Confidence 3444555544444444556678999988753 356789 9999999997654 4567889999874
No 71
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.0042 Score=55.54 Aligned_cols=37 Identities=24% Similarity=0.691 Sum_probs=32.4
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS 162 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~ 162 (218)
...|.||+++....+....+| |+|+|+..|+..++..
T Consensus 184 lf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~ 220 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTI 220 (445)
T ss_pred cccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHH
Confidence 468999999987768888999 9999999999999843
No 72
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.85 E-value=0.0045 Score=57.09 Aligned_cols=48 Identities=25% Similarity=0.560 Sum_probs=36.8
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHh-----cCCCCcccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR-----SHSSCPKCRRCLI 174 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~~CP~CR~~l~ 174 (218)
.+..+|-+|-++-++ ..+.. |.|.||.-||.+++. .+.+||.|...|.
T Consensus 534 k~~~~C~lc~d~aed---~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED---YIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhh---hHhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 455799999987443 44556 999999999999874 2568999976554
No 73
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.85 E-value=0.002 Score=56.05 Aligned_cols=50 Identities=26% Similarity=0.623 Sum_probs=39.9
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
...+|.+|-.=|-+...+ .. |-|-||+.||...|....+||.|...+-..
T Consensus 14 ~~itC~LC~GYliDATTI--~e-CLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTI--TE-CLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cceehhhccceeecchhH--HH-HHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 457899998777664432 33 999999999999999999999998766544
No 74
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.74 E-value=0.0036 Score=50.86 Aligned_cols=43 Identities=21% Similarity=0.522 Sum_probs=36.5
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRC 172 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~ 172 (218)
..|-||-++|.. ..+.. |||.|+..|...=++....|-+|-..
T Consensus 197 F~C~iCKkdy~s---pvvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 197 FLCGICKKDYES---PVVTE-CGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred eeehhchhhccc---hhhhh-cchhHHHHHHHHHhccCCcceecchh
Confidence 589999999976 44555 99999999999988888999999653
No 75
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.01 Score=49.89 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=47.6
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIETC 177 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~ 177 (218)
....|+||.+.+.+.-.+-+|..|||+|..+|++..+.....||+|-.++-+.+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 346799999999888888888779999999999999999999999988887763
No 76
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.62 E-value=0.011 Score=37.28 Aligned_cols=45 Identities=20% Similarity=0.474 Sum_probs=20.6
Q ss_pred cccccccccCCC-ceEEcCCCCcccChHHHHHHHh-cCCCCccccccc
Q 027813 128 CVICLSNFLPGE-RVRMLPICNHGFHVRCIDKWLR-SHSSCPKCRRCL 173 (218)
Q Consensus 128 CaICle~f~~~~-~vr~lp~C~H~FH~~CI~~Wl~-~~~~CP~CR~~l 173 (218)
|++|.+++...+ ...--+ |++..+..|...-+. .+..||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999994443 333334 678877788777665 366799999864
No 77
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.021 Score=50.39 Aligned_cols=50 Identities=26% Similarity=0.549 Sum_probs=41.7
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
.++..|+||...- ..-...| |+|.=+..||.+-+.+.+.|=.|+..+...
T Consensus 420 sEd~lCpICyA~p---i~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 420 SEDNLCPICYAGP---INAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVIDV 469 (489)
T ss_pred cccccCcceeccc---chhhccC-CCCchHHHHHHHHHhcCCeeeEecceeeeh
Confidence 5678999998652 2244678 999999999999999999999999988753
No 78
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=95.33 E-value=0.0079 Score=37.07 Aligned_cols=41 Identities=34% Similarity=0.814 Sum_probs=22.9
Q ss_pred cccccccccCCCceEEcCCCCcccChHHHHHHHhcCC--CCccc
Q 027813 128 CVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHS--SCPKC 169 (218)
Q Consensus 128 CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~--~CP~C 169 (218)
|.+|-+-.-.|....... |+=.+|..|++.+++.+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~-C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRD-CNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCc-cCchHHHHHHHHHHhcCCCCCCcCC
Confidence 667776666654433223 888999999999997755 79988
No 79
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.20 E-value=0.015 Score=50.07 Aligned_cols=43 Identities=33% Similarity=0.715 Sum_probs=33.2
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHh-cCCCCccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR-SHSSCPKCRR 171 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~~CP~CR~ 171 (218)
..|+.|-.-... .+ .++.|+|.|+.+||..-|. ....||.|.+
T Consensus 275 LkCplc~~Llrn--p~-kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRN--PM-KTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhC--cc-cCccccchHHHHHHhhhhhhccccCCCccc
Confidence 689999876544 23 3477999999999998875 4678999944
No 80
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.14 E-value=0.0072 Score=50.56 Aligned_cols=43 Identities=21% Similarity=0.597 Sum_probs=31.8
Q ss_pred ccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccc
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCL 173 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l 173 (218)
.|..|.-. ..++...++. |+|+||..|...-. ...||+|++++
T Consensus 5 hCn~C~~~-~~~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~i 47 (233)
T KOG4739|consen 5 HCNKCFRF-PSQDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSI 47 (233)
T ss_pred Eecccccc-CCCCceeeee-chhhhhhhhcccCC--cccccccccee
Confidence 57777644 4477787777 99999999976532 22899999983
No 81
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.0066 Score=52.09 Aligned_cols=44 Identities=27% Similarity=0.668 Sum_probs=30.2
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
+.-|+||++.-.+ ...|+ |||. ..|..-= ++-..||+||+-++.
T Consensus 300 ~~LC~ICmDaP~D---CvfLe-CGHm--VtCt~CG-krm~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLE-CGHM--VTCTKCG-KRMNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcc---eEEee-cCcE--Eeehhhc-cccccCchHHHHHHH
Confidence 5679999987544 67899 9998 3443221 112379999987764
No 82
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=94.65 E-value=0.015 Score=49.92 Aligned_cols=48 Identities=25% Similarity=0.619 Sum_probs=39.3
Q ss_pred cccccccccccCCC-ceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 126 TECVICLSNFLPGE-RVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 126 ~~CaICle~f~~~~-~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
..|+||.+.+-... .+..++ |||.-|..|+......+.+||+|.. +.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~-~~d 207 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK-PGD 207 (276)
T ss_pred CCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc-hHH
Confidence 45999999876654 456778 9999999999999888899999988 443
No 83
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.019 Score=49.40 Aligned_cols=44 Identities=25% Similarity=0.467 Sum_probs=36.7
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCL 173 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l 173 (218)
..|-||-..|.. ..+.. |+|.|+..|-..=+++...|.+|-+..
T Consensus 242 f~c~icr~~f~~---pVvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYR---PVVTK-CGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred cccccccccccc---chhhc-CCceeehhhhccccccCCcceeccccc
Confidence 469999999976 33455 999999999988888889999997654
No 84
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.023 Score=45.56 Aligned_cols=28 Identities=36% Similarity=1.023 Sum_probs=23.0
Q ss_pred CCcccChHHHHHHHhc----CC-------CCcccccccc
Q 027813 147 CNHGFHVRCIDKWLRS----HS-------SCPKCRRCLI 174 (218)
Q Consensus 147 C~H~FH~~CI~~Wl~~----~~-------~CP~CR~~l~ 174 (218)
||.-||.-|+..||+. ++ .||.|..++.
T Consensus 190 CgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 190 CGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 9999999999999964 11 4999987764
No 85
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.037 Score=47.89 Aligned_cols=47 Identities=32% Similarity=0.698 Sum_probs=38.3
Q ss_pred cccccccccccCCC---ceEEcCCCCcccChHHHHHHHhcC-CCCccccccc
Q 027813 126 TECVICLSNFLPGE---RVRMLPICNHGFHVRCIDKWLRSH-SSCPKCRRCL 173 (218)
Q Consensus 126 ~~CaICle~f~~~~---~vr~lp~C~H~FH~~CI~~Wl~~~-~~CP~CR~~l 173 (218)
.+|-||-++|..++ ..|+|. |||.|+..|+..-+... ..||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 58999999998764 347777 99999999998876553 4599999984
No 86
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.76 E-value=0.028 Score=54.58 Aligned_cols=41 Identities=27% Similarity=0.733 Sum_probs=30.7
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRC 172 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~ 172 (218)
..|..|-...+-. .|.. . |||.||.+|+. .+...||-|+.+
T Consensus 841 skCs~C~~~LdlP-~VhF-~-CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTLDLP-FVHF-L-CGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCccccc-eeee-e-cccHHHHHhhc---cCcccCCccchh
Confidence 5899998776541 2222 3 99999999998 456679999873
No 87
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.70 E-value=0.086 Score=45.04 Aligned_cols=53 Identities=17% Similarity=0.352 Sum_probs=40.8
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
.....|+|...+|........+-.|||+|-..+|..- .....||+|-.++.+.
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccC
Confidence 4557899999999665555555339999999999996 3356799998887744
No 88
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.54 E-value=0.072 Score=47.52 Aligned_cols=28 Identities=32% Similarity=0.961 Sum_probs=21.1
Q ss_pred CCcccChHHHHHHHhcC-------------CCCcccccccc
Q 027813 147 CNHGFHVRCIDKWLRSH-------------SSCPKCRRCLI 174 (218)
Q Consensus 147 C~H~FH~~CI~~Wl~~~-------------~~CP~CR~~l~ 174 (218)
|.-+++.+|+.+|+..+ -.||.||+.+-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 44567899999999543 25999998754
No 89
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.47 E-value=0.035 Score=54.15 Aligned_cols=36 Identities=25% Similarity=0.576 Sum_probs=28.9
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHH
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWL 160 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl 160 (218)
+.+++|.+|--.+... .-.+.| |||.||++||..-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 4567999999888664 445678 99999999998765
No 90
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=93.34 E-value=0.12 Score=33.31 Aligned_cols=35 Identities=26% Similarity=0.686 Sum_probs=30.2
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHH
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDK 158 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~ 158 (218)
....|.+|-+.|.+++.+.+-|.|+=.||..|-+.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 34689999999998888888899999999999543
No 91
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.23 E-value=0.062 Score=47.22 Aligned_cols=54 Identities=19% Similarity=0.454 Sum_probs=36.3
Q ss_pred CCCCcccccccccccCCCce-EEcCCCCcccChHHHHHHHhc-CCCCcccccccccc
Q 027813 122 PGLDTECVICLSNFLPGERV-RMLPICNHGFHVRCIDKWLRS-HSSCPKCRRCLIET 176 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~v-r~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~~ 176 (218)
+++++.|+.|+|++...|+- .-.| ||-..|.-|...--+. +..||-||+...++
T Consensus 11 edeed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred ccccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 45566799999999877643 2345 7766666664443222 56799999977654
No 92
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.80 E-value=0.052 Score=45.91 Aligned_cols=52 Identities=27% Similarity=0.708 Sum_probs=36.2
Q ss_pred CCCCcccccccccccCCCce-EEcCCC-----CcccChHHHHHHHhcC--------CCCcccccccc
Q 027813 122 PGLDTECVICLSNFLPGERV-RMLPIC-----NHGFHVRCIDKWLRSH--------SSCPKCRRCLI 174 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~v-r~lp~C-----~H~FH~~CI~~Wl~~~--------~~CP~CR~~l~ 174 (218)
.+.+..|=||+..=+++-.- =+-| | .|-.|..|+..|+..+ .+||-|+.+..
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 45567999999875443221 1335 6 4999999999999432 25999988765
No 93
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.54 E-value=0.052 Score=35.11 Aligned_cols=44 Identities=27% Similarity=0.536 Sum_probs=30.9
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
..|-.|... +..-.++| |+|+....|.+-| +-+-||.|-+.+..
T Consensus 8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccC
Confidence 355555543 23345788 9999999998875 55569999877653
No 94
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.41 E-value=0.072 Score=51.29 Aligned_cols=22 Identities=36% Similarity=1.016 Sum_probs=20.8
Q ss_pred CCcccChHHHHHHHhcCCCCcc
Q 027813 147 CNHGFHVRCIDKWLRSHSSCPK 168 (218)
Q Consensus 147 C~H~FH~~CI~~Wl~~~~~CP~ 168 (218)
|+|+-|..|...|+.....||.
T Consensus 1048 C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1048 CGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred ccccccHHHHHHHHhcCCcCCC
Confidence 9999999999999999999984
No 95
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.38 E-value=0.052 Score=52.40 Aligned_cols=46 Identities=33% Similarity=0.748 Sum_probs=36.5
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhc--CCCCcccccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS--HSSCPKCRRCLIET 176 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~--~~~CP~CR~~l~~~ 176 (218)
..|.||++ .+...+.+ |+|.|+.+|+..-+.. ...||+||..+.+.
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 69999999 34455666 9999999999888754 33599999988766
No 96
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.85 E-value=0.19 Score=39.55 Aligned_cols=34 Identities=29% Similarity=0.663 Sum_probs=21.2
Q ss_pred CcccccccccccCCCceEEcC------C-----CC-cccChHHHHHHHh
Q 027813 125 DTECVICLSNFLPGERVRMLP------I-----CN-HGFHVRCIDKWLR 161 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp------~-----C~-H~FH~~CI~~Wl~ 161 (218)
+..|+||||--.+. | +|- . |+ -.=|..|+|++-+
T Consensus 2 d~~CpICme~PHNA--V-LLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNA--V-LLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCce--E-EEEeccccCCccccccCCccchhHHHHHHHH
Confidence 46899999764432 2 221 0 43 3448899999853
No 97
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.33 E-value=0.064 Score=54.33 Aligned_cols=45 Identities=31% Similarity=0.670 Sum_probs=36.7
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRR 171 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~ 171 (218)
....|.||++.....-.+ .. |||.++..|+..|+..+..||.|..
T Consensus 1152 ~~~~c~ic~dil~~~~~I--~~-cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGI--AG-CGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHhcCCe--ee-echhHhhhHHHHHHHHhccCcchhh
Confidence 345899999998743222 23 9999999999999999999999973
No 98
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=90.14 E-value=0.19 Score=43.46 Aligned_cols=51 Identities=24% Similarity=0.653 Sum_probs=37.2
Q ss_pred CcccccccccccCCCc-eEEcCCCC-----cccChHHHHHHHh--cCCCCcccccccccc
Q 027813 125 DTECVICLSNFLPGER-VRMLPICN-----HGFHVRCIDKWLR--SHSSCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle~f~~~~~-vr~lp~C~-----H~FH~~CI~~Wl~--~~~~CP~CR~~l~~~ 176 (218)
+..|-||.++...... ....| |. +..|..|++.|+. .+..|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4789999998755332 33456 63 7789999999996 556799997755544
No 99
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=89.91 E-value=0.12 Score=44.86 Aligned_cols=44 Identities=30% Similarity=0.568 Sum_probs=28.8
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
..|--|=-. ..-.=|+.| |+|+||.+|-.. ...+.||.|-..+.
T Consensus 91 HfCd~Cd~P--I~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFP--IAIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCc--ceeeecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence 356666333 333447889 999999999543 23557999955443
No 100
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.85 E-value=0.087 Score=49.88 Aligned_cols=44 Identities=27% Similarity=0.535 Sum_probs=33.2
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRC 172 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~ 172 (218)
..|.||+..|......-+..+|||..+.+|+..- .+.+|| |..+
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~D 55 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKRD 55 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCcc
Confidence 4799999998776555455559999999998873 466788 6543
No 101
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=89.40 E-value=0.17 Score=31.74 Aligned_cols=43 Identities=23% Similarity=0.576 Sum_probs=24.7
Q ss_pred ccccccccccCCCceEEcCCCC-cccChHHHHHHHhcCCCCccccccccc
Q 027813 127 ECVICLSNFLPGERVRMLPICN-HGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~-H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
-|--|+-+.+. + .. |+ |..+..|+..-+.....||+|..+|..
T Consensus 4 nCKsCWf~~k~---L--i~-C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFANKG---L--IK-CSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S--SS---E--EE--SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhhhcCCC---e--ee-ecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 35556644322 2 23 75 999999999999999999999988764
No 102
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=88.96 E-value=1.1 Score=26.66 Aligned_cols=29 Identities=10% Similarity=0.374 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027813 51 NVVAVLSFLICSLICSLGFHFLLKCVFIRC 80 (218)
Q Consensus 51 ~viiil~ill~~li~~l~l~~i~r~~~~R~ 80 (218)
.+.++.++++.+.++++. ++++.|+++|.
T Consensus 5 ~IaIIv~V~vg~~iiii~-~~~YaCcykk~ 33 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIIC-MFYYACCYKKH 33 (38)
T ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHHHccc
Confidence 445555555555444443 34444553443
No 103
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.62 E-value=0.29 Score=46.20 Aligned_cols=47 Identities=32% Similarity=0.861 Sum_probs=40.0
Q ss_pred CCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
.+..+.|+||+++. ..+..+ |. |..|+..|+..+..||+|+..+.+.
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKED 522 (543)
T ss_pred hcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcc
Confidence 45568999999997 456677 88 9999999999999999998887765
No 104
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=87.53 E-value=0.25 Score=41.49 Aligned_cols=48 Identities=25% Similarity=0.678 Sum_probs=35.5
Q ss_pred CCcccccccccccCCC--ceEEcCCCCcccChHHHHHHHhc-CCCCc--cccc
Q 027813 124 LDTECVICLSNFLPGE--RVRMLPICNHGFHVRCIDKWLRS-HSSCP--KCRR 171 (218)
Q Consensus 124 ~~~~CaICle~f~~~~--~vr~lp~C~H~FH~~CI~~Wl~~-~~~CP--~CR~ 171 (218)
.+..|+||-.+---+- .+-+-|.|-|..|..|+|+-+.. ...|| -|-.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 4568999998754333 33445679999999999999966 45699 6743
No 105
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=87.21 E-value=0.43 Score=46.55 Aligned_cols=52 Identities=19% Similarity=0.537 Sum_probs=39.6
Q ss_pred CCCcccccccccccCCCceEEcCCCC-----cccChHHHHHHHhc--CCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICN-----HGFHVRCIDKWLRS--HSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~-----H~FH~~CI~~Wl~~--~~~CP~CR~~l~~~ 176 (218)
+++..|-||..+=..++.+ .-| |+ ...|.+|+.+|+.- ...|-+|+.++.-+
T Consensus 10 ~d~~~CRICr~e~~~d~pL-fhP-CKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPL-FHP-CKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred ccchhceeecCCCCCCCcC-ccc-ccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 3457999999987666654 456 65 57899999999965 44599998877654
No 106
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=85.10 E-value=0.6 Score=45.46 Aligned_cols=51 Identities=12% Similarity=0.242 Sum_probs=36.4
Q ss_pred CCcccccccccccCCC---ceEEcCCCCcccChHHHHHHHhc------CCCCcccccccc
Q 027813 124 LDTECVICLSNFLPGE---RVRMLPICNHGFHVRCIDKWLRS------HSSCPKCRRCLI 174 (218)
Q Consensus 124 ~~~~CaICle~f~~~~---~vr~lp~C~H~FH~~CI~~Wl~~------~~~CP~CR~~l~ 174 (218)
....|.+|.-++...+ .+-.+..|+|.|+..||..|... +-.|+.|...|.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 3467888888887622 22233459999999999999843 345899987765
No 107
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.88 E-value=0.48 Score=40.96 Aligned_cols=30 Identities=20% Similarity=0.617 Sum_probs=23.3
Q ss_pred CCcccChHHHHHHHhc-------------CCCCcccccccccc
Q 027813 147 CNHGFHVRCIDKWLRS-------------HSSCPKCRRCLIET 176 (218)
Q Consensus 147 C~H~FH~~CI~~Wl~~-------------~~~CP~CR~~l~~~ 176 (218)
|.-+++.+|+.+|+.. +-+||+||+.+.-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 6788899999999842 33699999987543
No 108
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.75 E-value=0.34 Score=43.81 Aligned_cols=38 Identities=24% Similarity=0.571 Sum_probs=28.4
Q ss_pred CCcccccccccccCC-CceEEcCCCCcccChHHHHHHHhc
Q 027813 124 LDTECVICLSNFLPG-ERVRMLPICNHGFHVRCIDKWLRS 162 (218)
Q Consensus 124 ~~~~CaICle~f~~~-~~vr~lp~C~H~FH~~CI~~Wl~~ 162 (218)
...+|.||..++... +...+.. |+|.|+.+|+.+.+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~-C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLK-CGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHhc-ccchhhhHHhHHHhhh
Confidence 356999999555444 4445455 9999999999998864
No 109
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=84.06 E-value=0.88 Score=39.27 Aligned_cols=47 Identities=21% Similarity=0.598 Sum_probs=33.2
Q ss_pred ccccccccccCC-C-ceEEcCCCCcccChHHHHHHHhc-CCCCcccccccc
Q 027813 127 ECVICLSNFLPG-E-RVRMLPICNHGFHVRCIDKWLRS-HSSCPKCRRCLI 174 (218)
Q Consensus 127 ~CaICle~f~~~-~-~vr~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~ 174 (218)
.|++|-.+---+ + .+.+-+ |+|..+..|+|.-+.. ...||-|-..+-
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~-C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINE-CGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeecc-ccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 588887654322 2 233346 9999999999999865 457999965544
No 110
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=83.59 E-value=0.82 Score=37.58 Aligned_cols=40 Identities=38% Similarity=0.774 Sum_probs=28.3
Q ss_pred Cccccccccc-----ccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccc
Q 027813 125 DTECVICLSN-----FLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCR 170 (218)
Q Consensus 125 ~~~CaICle~-----f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR 170 (218)
+..|.+|-++ |+.+ .+..-+.|+-+||..|.. +..||-|-
T Consensus 152 GfiCe~C~~~~~IfPF~~~-~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQID-TTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCC-CeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 4688888753 3332 444555699999999976 26699993
No 111
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.29 E-value=0.46 Score=46.12 Aligned_cols=43 Identities=23% Similarity=0.566 Sum_probs=32.2
Q ss_pred CcccccccccccCC----CceEEcCCCCcccChHHHHHHHhcCCCCccc
Q 027813 125 DTECVICLSNFLPG----ERVRMLPICNHGFHVRCIDKWLRSHSSCPKC 169 (218)
Q Consensus 125 ~~~CaICle~f~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~C 169 (218)
+..|.-|++..... +.+.++. |+|+||..|+.--..+++ |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 35799999887532 3567777 999999999988876655 5444
No 112
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.91 E-value=1.1 Score=40.38 Aligned_cols=43 Identities=21% Similarity=0.415 Sum_probs=36.2
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCC---CCccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHS---SCPKC 169 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~---~CP~C 169 (218)
..|||=-+.-.++.....|. |||+..++-+++--++.. .||.|
T Consensus 335 F~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred eecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence 58999888877777778888 999999999999776643 59999
No 113
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.93 E-value=0.41 Score=36.70 Aligned_cols=59 Identities=29% Similarity=0.529 Sum_probs=33.7
Q ss_pred CCCcccccccc-cccCCCceEEcCCCCcccChHHHHHH-HhcCC---CCccccc--ccccccccccC
Q 027813 123 GLDTECVICLS-NFLPGERVRMLPICNHGFHVRCIDKW-LRSHS---SCPKCRR--CLIETCENIVG 182 (218)
Q Consensus 123 ~~~~~CaICle-~f~~~~~vr~lp~C~H~FH~~CI~~W-l~~~~---~CP~CR~--~l~~~~~~~~~ 182 (218)
+.+..|-||+. .|.+|-.-.-.. |.-.|+..|-.+- |+.++ .|-+|+. .++.+.+++..
T Consensus 63 ~ddatC~IC~KTKFADG~GH~C~Y-Cq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ksg~wf~ 128 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADGCGHNCSY-CQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWFY 128 (169)
T ss_pred CcCcchhhhhhcccccccCcccch-hhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhcchHHH
Confidence 45689999985 454442222222 4445555554443 23344 4999965 56666677765
No 114
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=81.60 E-value=0.38 Score=46.17 Aligned_cols=46 Identities=30% Similarity=0.687 Sum_probs=35.1
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhc---CCCCccccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS---HSSCPKCRRCLIE 175 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~---~~~CP~CR~~l~~ 175 (218)
.+|+||++.+... ..+. |.|.|...|+..-|.. ...||+|+..+..
T Consensus 22 lEc~ic~~~~~~p---~~~k-c~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 22 LECPICLEHVKEP---SLLK-CDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred ccCCceeEEeecc---chhh-hhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 5899999998775 3445 9999999998776643 3469999865543
No 115
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=80.27 E-value=1.3 Score=38.75 Aligned_cols=45 Identities=22% Similarity=0.585 Sum_probs=33.1
Q ss_pred CCcccccccccccCCCceEEcCCC--CcccChHHHHHHHhcCCCCcccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPIC--NHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C--~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
.-.+|+||.+.+..- +.. | ||+-+..|=. +....||.||.++-.-
T Consensus 47 ~lleCPvC~~~l~~P----i~Q-C~nGHlaCssC~~---~~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPP----IFQ-CDNGHLACSSCRT---KVSNKCPTCRLPIGNI 93 (299)
T ss_pred hhccCchhhccCccc----cee-cCCCcEehhhhhh---hhcccCCccccccccH
Confidence 346999999998663 233 7 6888888854 4567799999988743
No 116
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=80.00 E-value=1.2 Score=34.07 Aligned_cols=53 Identities=19% Similarity=0.421 Sum_probs=35.0
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHH-HHHHH--hcCCCCcccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRC-IDKWL--RSHSSCPKCRRCLIET 176 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~C-I~~Wl--~~~~~CP~CR~~l~~~ 176 (218)
.-.+|.||.|.-.+..-+.--.-||-..+--| ...|- ..+..||+|+.++-..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 34699999987655433322233887777775 55563 3467899999887643
No 117
>PF15050 SCIMP: SCIMP protein
Probab=78.99 E-value=4.6 Score=30.40 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 027813 50 SNVVAVLSFLICSLICSLGFHF 71 (218)
Q Consensus 50 ~~viiil~ill~~li~~l~l~~ 71 (218)
.+.++||++.++++-+++++++
T Consensus 6 ~nFWiiLAVaII~vS~~lglIl 27 (133)
T PF15050_consen 6 DNFWIILAVAIILVSVVLGLIL 27 (133)
T ss_pred hchHHHHHHHHHHHHHHHHHHH
Confidence 3456666665444444444333
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.82 E-value=1.5 Score=42.59 Aligned_cols=41 Identities=27% Similarity=0.591 Sum_probs=29.8
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPK 168 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~ 168 (218)
..|.+|-..+.. ..+ .-+.|+|.=|.+|+..|+..+.-||.
T Consensus 780 ~~CtVC~~vi~G-~~~-~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG-VDV-WCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee-eEe-ecccccccccHHHHHHHHhcCCCCcc
Confidence 478888655432 212 23449999999999999999887766
No 119
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=77.66 E-value=0.81 Score=43.35 Aligned_cols=41 Identities=27% Similarity=0.724 Sum_probs=25.4
Q ss_pred Ccccccccc-----cccCCCceEEcCCCCcccChHHHHHHHhcCCCCccc
Q 027813 125 DTECVICLS-----NFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKC 169 (218)
Q Consensus 125 ~~~CaICle-----~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~C 169 (218)
...|.+|-. .|+.....+-.. |+++||..|+.. ++..||.|
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~-C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCST-CLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHH-HHHHHHHHHHhc---cCCCCCch
Confidence 457888822 122222234445 999999999554 44559999
No 120
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=77.05 E-value=5.9 Score=29.99 Aligned_cols=6 Identities=0% Similarity=-0.070 Sum_probs=2.4
Q ss_pred CCCChh
Q 027813 46 SCLHSN 51 (218)
Q Consensus 46 ~~f~~~ 51 (218)
+.|...
T Consensus 59 h~fs~~ 64 (122)
T PF01102_consen 59 HRFSEP 64 (122)
T ss_dssp SSSS-T
T ss_pred cCcccc
Confidence 445544
No 121
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.74 E-value=3.9 Score=30.48 Aligned_cols=46 Identities=24% Similarity=0.428 Sum_probs=33.2
Q ss_pred CcccccccccccCCC----------ceEEcCCCCcccChHHHHHHHhcCCCCcccc
Q 027813 125 DTECVICLSNFLPGE----------RVRMLPICNHGFHVRCIDKWLRSHSSCPKCR 170 (218)
Q Consensus 125 ~~~CaICle~f~~~~----------~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR 170 (218)
...|--|+..|.... ..-.-+.|++.|+.+|=.-|-..-.+||-|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 357999999986431 1122455999999999666666667799995
No 122
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=76.37 E-value=2.7 Score=23.97 Aligned_cols=38 Identities=29% Similarity=0.505 Sum_probs=25.3
Q ss_pred ccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
.|+.|-+.+..++.... . =+..||.+| ..|..|+..|.
T Consensus 1 ~C~~C~~~i~~~~~~~~-~-~~~~~H~~C--------f~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELVLR-A-LGKVWHPEC--------FKCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEEEE-e-CCccccccC--------CCCcccCCcCc
Confidence 37888888776533322 2 478999888 45777776653
No 123
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=75.62 E-value=4 Score=35.68 Aligned_cols=21 Identities=5% Similarity=0.138 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027813 56 LSFLICSLICSLGFHFLLKCV 76 (218)
Q Consensus 56 l~ill~~li~~l~l~~i~r~~ 76 (218)
++++++++++.+++++++||+
T Consensus 262 iiaIliIVLIMvIIYLILRYR 282 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLILRYR 282 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444455543
No 125
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=74.87 E-value=15 Score=26.85 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 52 VVAVLSFLICSLICSLGFHFLLKCV 76 (218)
Q Consensus 52 viiil~ill~~li~~l~l~~i~r~~ 76 (218)
+.++++|++.++++.+.+++.++|-
T Consensus 17 W~~LVGVv~~al~~SlLIalaaKC~ 41 (102)
T PF15176_consen 17 WPFLVGVVVTALVTSLLIALAAKCP 41 (102)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHhH
Confidence 4445555555555555555555554
No 126
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=74.57 E-value=6.3 Score=28.08 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=23.7
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 39 PPTYPAKSCLHSNVVAVLSFLICSLICSLGFHFLLK 74 (218)
Q Consensus 39 ~~~~~~~~~f~~~viiil~ill~~li~~l~l~~i~r 74 (218)
+++.+++..|+..+.+++.+++.+.++-|+..+++|
T Consensus 25 ~~p~ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLk 60 (91)
T PF01708_consen 25 AAPSSSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLK 60 (91)
T ss_pred CCCCCCCCcceeEeeeeehHHHHHHHHHHHHHHHHH
Confidence 334456777887777777777666666666666665
No 127
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=74.41 E-value=2.6 Score=26.93 Aligned_cols=42 Identities=29% Similarity=0.767 Sum_probs=21.6
Q ss_pred cccccccccCCC------ceEEcCCCCcccChHHHHHHH-hcCCCCcccc
Q 027813 128 CVICLSNFLPGE------RVRMLPICNHGFHVRCIDKWL-RSHSSCPKCR 170 (218)
Q Consensus 128 CaICle~f~~~~------~vr~lp~C~H~FH~~CI~~Wl-~~~~~CP~CR 170 (218)
|--|+..|.... ..-.-|.|++.|+.+| |-++ ..-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 556777776642 3344567999999999 4433 3345699883
No 128
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=74.27 E-value=1.9 Score=36.94 Aligned_cols=50 Identities=30% Similarity=0.681 Sum_probs=36.6
Q ss_pred CcccccccccccCCCceEEc---CCCCcccChHHHHHHHhc---------CCCCcccccccc
Q 027813 125 DTECVICLSNFLPGERVRML---PICNHGFHVRCIDKWLRS---------HSSCPKCRRCLI 174 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~l---p~C~H~FH~~CI~~Wl~~---------~~~CP~CR~~l~ 174 (218)
..+|.+|.+++...+..+.. +.|+-.+|..|+..-+.. ...||.|++.+.
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 36999999999655555443 448899999999995532 235999988543
No 129
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=73.94 E-value=1.7 Score=35.92 Aligned_cols=45 Identities=29% Similarity=0.746 Sum_probs=35.6
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCR 170 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR 170 (218)
++-..|.+|.+-.-.+ +|--. ||-.||..|+..++++...||.|.
T Consensus 179 dnlk~Cn~Ch~LvIqg--~rCg~-c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 179 DNLKNCNLCHCLVIQG--IRCGS-CNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHHHhHhHHHhhee--eccCc-ccchhhhHHHHHHhcccCcCCchh
Confidence 3457899998776443 33344 889999999999999999999993
No 130
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=73.68 E-value=12 Score=28.07 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 027813 51 NVVAVLSFLICSLICSLGFHFLLKCVFIRCSRL 83 (218)
Q Consensus 51 ~viiil~ill~~li~~l~l~~i~r~~~~R~~~~ 83 (218)
.+-++|..|+.+.+..++...+++.+++|+.++
T Consensus 85 aLp~VIGGLcaL~LaamGA~~LLrR~cRr~arr 117 (126)
T PF03229_consen 85 ALPLVIGGLCALTLAAMGAGALLRRCCRRAARR 117 (126)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555544454555544444333555443
No 131
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=72.49 E-value=3 Score=26.37 Aligned_cols=39 Identities=26% Similarity=0.469 Sum_probs=27.9
Q ss_pred cccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 128 CVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 128 CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
|+-|-+.+..++.+.. . -+..||.+| .+|-.|+..|...
T Consensus 1 C~~C~~~I~~~~~~~~-~-~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIK-A-MGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEE-E-TTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEE-e-CCcEEEccc--------cccCCCCCccCCC
Confidence 6778888876554432 2 788999888 5688888877655
No 132
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=71.31 E-value=13 Score=27.17 Aligned_cols=36 Identities=17% Similarity=0.034 Sum_probs=26.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 40 PTYPAKSCLHSNVVAVLSFLICSLICSLGFHFLLKC 75 (218)
Q Consensus 40 ~~~~~~~~f~~~viiil~ill~~li~~l~l~~i~r~ 75 (218)
.+..++.++...|.++++++++.+++++++=+-+.+
T Consensus 9 ~~~~~g~sW~~LVGVv~~al~~SlLIalaaKC~~~~ 44 (102)
T PF15176_consen 9 GPGEGGRSWPFLVGVVVTALVTSLLIALAAKCPVWY 44 (102)
T ss_pred CCCCCCcccHhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334457889999999999888888888877554433
No 133
>PF14979 TMEM52: Transmembrane 52
Probab=71.23 E-value=12 Score=29.10 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027813 52 VVAVLSFLICSLICSLGFHFLLKCVFIRCSR 82 (218)
Q Consensus 52 viiil~ill~~li~~l~l~~i~r~~~~R~~~ 82 (218)
|++++.+++.++++.+. ...+|++++|+++
T Consensus 22 IwLill~~~llLLCG~t-a~C~rfCClrk~~ 51 (154)
T PF14979_consen 22 IWLILLIGFLLLLCGLT-ASCVRFCCLRKQA 51 (154)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhcccc
Confidence 33344444444444333 3455633355554
No 134
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=71.21 E-value=15 Score=29.24 Aligned_cols=31 Identities=13% Similarity=0.242 Sum_probs=15.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027813 49 HSNVVAVLSFLICSLICSLGFHFLLKCVFIR 79 (218)
Q Consensus 49 ~~~viiil~ill~~li~~l~l~~i~r~~~~R 79 (218)
+..++.-..++++++..++++++++|.++.|
T Consensus 90 d~~~l~R~~~Vl~g~s~l~i~yfvir~~R~r 120 (163)
T PF06679_consen 90 DSPMLKRALYVLVGLSALAILYFVIRTFRLR 120 (163)
T ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334444444455555555556666655334
No 135
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.08 E-value=2.5 Score=38.90 Aligned_cols=37 Identities=27% Similarity=0.573 Sum_probs=30.3
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS 162 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~ 162 (218)
.....|-||.+.+.. .+..+. |+|.|+..|....+.+
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 456799999999866 444566 9999999999999855
No 136
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.93 E-value=2.5 Score=34.98 Aligned_cols=39 Identities=31% Similarity=0.614 Sum_probs=27.1
Q ss_pred cccccccccCCCceEEcCCCCcc-cChHHHHHHHhcCCCCcccccccc
Q 027813 128 CVICLSNFLPGERVRMLPICNHG-FHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 128 CaICle~f~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
|-.|-+. +..|-.+| |.|. ++..|=.. -..||+|+....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence 8888765 45588899 9865 55557433 355999987654
No 137
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=68.87 E-value=3.2 Score=22.60 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=13.2
Q ss_pred ccccccccccCCCceEEcCCCCccc
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGF 151 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~F 151 (218)
.|+-|-.++... .+.-|.|||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 466676665432 33445577776
No 138
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=68.73 E-value=7.7 Score=33.93 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=20.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027813 48 LHSNVVAVLSFLICSLICSLGFHFLLKCVFIRC 80 (218)
Q Consensus 48 f~~~viiil~ill~~li~~l~l~~i~r~~~~R~ 80 (218)
+......|++.+++++++++++++++..++.||
T Consensus 251 ~~~~~t~I~aSiiaIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 251 YASLTTAIIASIIAILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556677777777777776666655553343
No 139
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=68.44 E-value=7 Score=24.62 Aligned_cols=40 Identities=30% Similarity=0.681 Sum_probs=18.2
Q ss_pred ccccccccccCCCceEEcCCCCcccChHHHH--HHHhcC-----CCCcccccc
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGFHVRCID--KWLRSH-----SSCPKCRRC 172 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~FH~~CI~--~Wl~~~-----~~CP~CR~~ 172 (218)
.|+|....+.. .+|-.. |.|. +|+| .||..+ -.||+|.++
T Consensus 4 ~CPls~~~i~~--P~Rg~~-C~H~---~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI--PVRGKN-CKHL---QCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS--EEEETT---SS-----EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe--CccCCc-Cccc---ceECHHHHHHHhhccCCeECcCCcCc
Confidence 57877776644 566666 8887 4544 455332 259999763
No 140
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.68 E-value=5.3 Score=34.01 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=40.2
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccccccccCC
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIETCENIVGS 183 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~~~~~~~ 183 (218)
...|+|=--+|...-..-.+-.|||+|-..-+.+. ...+|++|...+.+.+-.+..+
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvIvlNg 167 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVIVLNG 167 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeEeeCC
Confidence 35798877676554444444449999998887774 3567999999888776555554
No 141
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=67.39 E-value=2.5 Score=26.25 Aligned_cols=44 Identities=25% Similarity=0.541 Sum_probs=28.9
Q ss_pred ccccccccccCCCceEEcCCCCcccChHHHHHHHh------cCCCCccccc
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR------SHSSCPKCRR 171 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~------~~~~CP~CR~ 171 (218)
.|.||-..-..+ .+..=..|+..||..|+..=.. ..-.||.|+.
T Consensus 1 ~C~vC~~~~~~~-~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDG-DMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTS-SEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCC-CeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 388998844443 3444445999999999876542 1345888853
No 142
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=67.15 E-value=4.7 Score=33.46 Aligned_cols=32 Identities=6% Similarity=0.172 Sum_probs=13.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 44 AKSCLHSNVVAVLSFLICSLICSLGFHFLLKCV 76 (218)
Q Consensus 44 ~~~~f~~~viiil~ill~~li~~l~l~~i~r~~ 76 (218)
...+....++-+++.++.++++++ +..++|++
T Consensus 32 ~~~d~~~I~iaiVAG~~tVILVI~-i~v~vR~C 63 (221)
T PF08374_consen 32 RSKDYVKIMIAIVAGIMTVILVIF-IVVLVRYC 63 (221)
T ss_pred ccccceeeeeeeecchhhhHHHHH-HHHHHHHH
Confidence 333444444444444444433333 33344544
No 143
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=66.03 E-value=23 Score=29.71 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=10.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 48 LHSNVVAVLSFLICSLICSLGFHFLLKCV 76 (218)
Q Consensus 48 f~~~viiil~ill~~li~~l~l~~i~r~~ 76 (218)
+...++.++++++++.+.++.++-++|.+
T Consensus 186 ~S~vilpvvIaliVitl~vf~LvgLyr~C 214 (259)
T PF07010_consen 186 YSSVILPVVIALIVITLSVFTLVGLYRMC 214 (259)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333344433
No 144
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=64.70 E-value=4.4 Score=23.81 Aligned_cols=25 Identities=36% Similarity=0.755 Sum_probs=16.1
Q ss_pred ccccccccccCCCc--------eEEcCCCCcccC
Q 027813 127 ECVICLSNFLPGER--------VRMLPICNHGFH 152 (218)
Q Consensus 127 ~CaICle~f~~~~~--------vr~lp~C~H~FH 152 (218)
.|+=|-..|...+. ++ -+.|+|+|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vr-C~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVR-CPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEE-CCCCCcEee
Confidence 68888888865542 22 344888875
No 145
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=63.61 E-value=3.4 Score=37.85 Aligned_cols=33 Identities=27% Similarity=0.626 Sum_probs=27.2
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHH
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWL 160 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl 160 (218)
++..|+||..-|.+ .++|| |+|..+..|-..-+
T Consensus 3 eelkc~vc~~f~~e---piil~-c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE---PIILP-CSHNLCQACARNIL 35 (699)
T ss_pred ccccCceehhhccC---ceEee-cccHHHHHHHHhhc
Confidence 34689999988866 67899 99999999987655
No 146
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=63.61 E-value=7.8 Score=34.19 Aligned_cols=69 Identities=20% Similarity=0.404 Sum_probs=44.5
Q ss_pred ccHHHHhcCCceeeccCCCCC-CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccc
Q 027813 102 IKKKALRNFPVVNYSTELKLP-GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRR 171 (218)
Q Consensus 102 ~~~~~i~~lp~~~~~~~~~~~-~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~ 171 (218)
+.+.---.+|...|.+..... .....|-.|.++...+...+--. |.|.|+.+|=.--=..-..||.|..
T Consensus 306 LARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~-Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 306 LARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCES-CKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred HHHHHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEchh-ccceeeccchHHHHhhhhcCCCcCC
Confidence 444444456776666543322 23456999988877776666555 9999999993332234456999963
No 147
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=63.28 E-value=12 Score=26.25 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=12.3
Q ss_pred CCCCChhHHHHHHHHHHHHH
Q 027813 45 KSCLHSNVVAVLSFLICSLI 64 (218)
Q Consensus 45 ~~~f~~~viiil~ill~~li 64 (218)
-..+++++++.+.++++++|
T Consensus 19 ~~~l~pn~lMtILivLVIIi 38 (85)
T PF10717_consen 19 LNGLNPNTLMTILIVLVIII 38 (85)
T ss_pred ccccChhHHHHHHHHHHHHH
Confidence 35677777666655555444
No 148
>PF15102 TMEM154: TMEM154 protein family
Probab=62.43 E-value=2.7 Score=32.74 Aligned_cols=10 Identities=40% Similarity=0.973 Sum_probs=6.0
Q ss_pred hHHHHHHHhc
Q 027813 153 VRCIDKWLRS 162 (218)
Q Consensus 153 ~~CI~~Wl~~ 162 (218)
-+=+|+|+.+
T Consensus 127 meeldkwm~s 136 (146)
T PF15102_consen 127 MEELDKWMNS 136 (146)
T ss_pred HHHHHhHHHh
Confidence 3447788744
No 149
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=62.06 E-value=11 Score=36.28 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=18.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 46 SCLHSNVVAVLSFLICSLICSLGFHFLLKCV 76 (218)
Q Consensus 46 ~~f~~~viiil~ill~~li~~l~l~~i~r~~ 76 (218)
.+-+.++|+|++|++.++++++++++++.++
T Consensus 263 ~s~~~NlWII~gVlvPv~vV~~Iiiil~~~L 293 (684)
T PF12877_consen 263 KSPPNNLWIIAGVLVPVLVVLLIIIILYWKL 293 (684)
T ss_pred CCCCCCeEEEehHhHHHHHHHHHHHHHHHHH
Confidence 3345567788888776666655555554444
No 150
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=61.82 E-value=2.6 Score=36.66 Aligned_cols=23 Identities=17% Similarity=-0.029 Sum_probs=0.0
Q ss_pred ccccchhhhhhcccchhhhccCC
Q 027813 7 LSTKHLPDFLGKFQSRKLLIQNP 29 (218)
Q Consensus 7 ~~~~~~~~~~~~~~sr~lL~~~~ 29 (218)
+...|..||.....+...+.+..
T Consensus 87 f~~am~pef~V~svsv~~~G~C~ 109 (290)
T PF05454_consen 87 FVRAMGPEFKVKSVSVIPIGSCQ 109 (290)
T ss_dssp -----------------------
T ss_pred HHHHhCCCCceeEEEEEEeeccC
Confidence 34446666666666665555443
No 151
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=61.31 E-value=15 Score=26.13 Aligned_cols=6 Identities=33% Similarity=0.163 Sum_probs=2.4
Q ss_pred hccccc
Q 027813 79 RCSRLL 84 (218)
Q Consensus 79 R~~~~~ 84 (218)
|+.|+.
T Consensus 59 krsRrP 64 (94)
T PF05393_consen 59 KRSRRP 64 (94)
T ss_pred hhccCC
Confidence 334433
No 152
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=61.30 E-value=4.6 Score=23.64 Aligned_cols=25 Identities=28% Similarity=0.639 Sum_probs=16.2
Q ss_pred ccccccccccCCCc--------eEEcCCCCcccC
Q 027813 127 ECVICLSNFLPGER--------VRMLPICNHGFH 152 (218)
Q Consensus 127 ~CaICle~f~~~~~--------vr~lp~C~H~FH 152 (218)
+|+=|...|...|. ++ -+.|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~-C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVR-CSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEE-CCCCCCEeC
Confidence 68888888866553 22 234788875
No 153
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=60.36 E-value=11 Score=33.67 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 027813 66 SLGFHFLLKC 75 (218)
Q Consensus 66 ~l~l~~i~r~ 75 (218)
.+++++++||
T Consensus 326 MvIIYLILRY 335 (353)
T TIGR01477 326 MVIIYLILRY 335 (353)
T ss_pred HHHHHHHHHh
Confidence 3444455554
No 154
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=60.26 E-value=8.2 Score=39.44 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=28.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 027813 49 HSNVVAVLSFLICSLICSLGFHFLLKCVFIRCSRL 83 (218)
Q Consensus 49 ~~~viiil~ill~~li~~l~l~~i~r~~~~R~~~~ 83 (218)
-+.+++|+++++-+|+++++++++.+|-|++|.+.
T Consensus 976 vp~wiIi~svl~GLLlL~llv~~LwK~GFFKR~r~ 1010 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALLVLLLWKCGFFKRNRK 1010 (1030)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHhcCccccCCC
Confidence 45777888888888888888888888887777664
No 155
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=59.13 E-value=23 Score=35.00 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027813 53 VAVLSFLICSLICSLGFHFLLKCVFIR 79 (218)
Q Consensus 53 iiil~ill~~li~~l~l~~i~r~~~~R 79 (218)
+++++||..++++++++++++.|+++|
T Consensus 273 ~fLl~ILG~~~livl~lL~vLl~yCrr 299 (807)
T PF10577_consen 273 VFLLAILGGTALIVLILLCVLLCYCRR 299 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 445555554444444444444443333
No 156
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=57.70 E-value=4.5 Score=26.84 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=19.3
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHH
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWL 160 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl 160 (218)
....|.+|...|..-..-..-..||++|+..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 4578999999996644333445599999999976543
No 157
>PTZ00046 rifin; Provisional
Probab=57.52 E-value=12 Score=33.47 Aligned_cols=9 Identities=11% Similarity=0.264 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 027813 67 LGFHFLLKC 75 (218)
Q Consensus 67 l~l~~i~r~ 75 (218)
+++++++||
T Consensus 332 vIIYLILRY 340 (358)
T PTZ00046 332 VIIYLILRY 340 (358)
T ss_pred HHHHHHHHh
Confidence 344444444
No 158
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=56.87 E-value=22 Score=24.50 Aligned_cols=8 Identities=13% Similarity=0.575 Sum_probs=4.7
Q ss_pred HHHHHHHH
Q 027813 69 FHFLLKCV 76 (218)
Q Consensus 69 l~~i~r~~ 76 (218)
.++++||+
T Consensus 42 ~~liVRCf 49 (81)
T PF11057_consen 42 GLLIVRCF 49 (81)
T ss_pred HHHHHHHH
Confidence 34556776
No 159
>PRK01844 hypothetical protein; Provisional
Probab=55.82 E-value=31 Score=23.59 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 52 VVAVLSFLICSLICSLGFHFLLKCV 76 (218)
Q Consensus 52 viiil~ill~~li~~l~l~~i~r~~ 76 (218)
++++++++.+++-+++++++..++.
T Consensus 5 ~~I~l~I~~li~G~~~Gff~ark~~ 29 (72)
T PRK01844 5 LGILVGVVALVAGVALGFFIARKYM 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455544444455555444443
No 160
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=55.33 E-value=17 Score=32.11 Aligned_cols=48 Identities=23% Similarity=0.565 Sum_probs=32.3
Q ss_pred cccccccccccCCCceEEcC-CCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 126 TECVICLSNFLPGERVRMLP-ICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp-~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
..|+||-+.....+.- .+| .|+|.-|..|...-...+.+||.||....
T Consensus 250 ~s~p~~~~~~~~~d~~-~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSN-FLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccc-cccccccccchhhhhhcccccCCCCCccCCccc
Confidence 7899999987444422 344 05666666666666667888999995444
No 161
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=54.08 E-value=2.2 Score=37.08 Aligned_cols=38 Identities=26% Similarity=0.539 Sum_probs=30.6
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCC
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHS 164 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~ 164 (218)
.+|.+|+++|..+.....+. |.-+||..|+-.|+....
T Consensus 215 rvC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred eecHHHHHHHhcccccchhh-cccccccccccccccccc
Confidence 49999999998766666666 777999999999986643
No 162
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.97 E-value=11 Score=25.06 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=22.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 46 SCLHSNVVAVLSFLICSLICSLGFHFLLKCV 76 (218)
Q Consensus 46 ~~f~~~viiil~ill~~li~~l~l~~i~r~~ 76 (218)
..|++..++++.|.-.+++++++-++++.|+
T Consensus 8 KGlnPGlIVLlvV~g~ll~flvGnyvlY~Ya 38 (69)
T PF04689_consen 8 KGLNPGLIVLLVVAGLLLVFLVGNYVLYVYA 38 (69)
T ss_pred cCCCCCeEEeehHHHHHHHHHHHHHHHHHHH
Confidence 5677778777777777777777777766655
No 163
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=53.56 E-value=23 Score=26.16 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027813 55 VLSFLICSLICSLGFHF 71 (218)
Q Consensus 55 il~ill~~li~~l~l~~ 71 (218)
+++++.+++++++++.+
T Consensus 3 Ll~il~llLll~l~asl 19 (107)
T PF15330_consen 3 LLGILALLLLLSLAASL 19 (107)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 164
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=53.39 E-value=16 Score=22.08 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 027813 52 VVAVLSFLI 60 (218)
Q Consensus 52 viiil~ill 60 (218)
+++++.++.
T Consensus 10 VIlVF~lVg 18 (43)
T PF08114_consen 10 VILVFCLVG 18 (43)
T ss_pred eeeehHHHH
Confidence 333333333
No 165
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=52.36 E-value=21 Score=30.90 Aligned_cols=8 Identities=13% Similarity=0.368 Sum_probs=3.1
Q ss_pred HHHhhccc
Q 027813 75 CVFIRCSR 82 (218)
Q Consensus 75 ~~~~R~~~ 82 (218)
+.++||.+
T Consensus 281 WlyrrRK~ 288 (295)
T TIGR01478 281 WLYRRRKK 288 (295)
T ss_pred HHHHhhcc
Confidence 33344433
No 166
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=52.17 E-value=32 Score=26.90 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=15.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 44 AKSCLHSNVVAVLSFLICSLICSLGFHFLLKC 75 (218)
Q Consensus 44 ~~~~f~~~viiil~ill~~li~~l~l~~i~r~ 75 (218)
++..++..+++.+++.+++.++++++.++..|
T Consensus 113 p~~gY~nklilaisvtvv~~iliii~CLiei~ 144 (154)
T PF14914_consen 113 PGYGYNNKLILAISVTVVVMILIIIFCLIEIC 144 (154)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444444444444333
No 167
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=51.80 E-value=37 Score=25.84 Aligned_cols=8 Identities=13% Similarity=0.314 Sum_probs=2.7
Q ss_pred HHHHHHHH
Q 027813 52 VVAVLSFL 59 (218)
Q Consensus 52 viiil~il 59 (218)
+++|+.++
T Consensus 44 ~lYIL~vm 51 (129)
T PF02060_consen 44 YLYILVVM 51 (129)
T ss_dssp T-HHHHHH
T ss_pred eehHHHHH
Confidence 33443333
No 168
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=51.65 E-value=10 Score=30.20 Aligned_cols=7 Identities=0% Similarity=0.302 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 027813 54 AVLSFLI 60 (218)
Q Consensus 54 iil~ill 60 (218)
++++|++
T Consensus 80 iivgvi~ 86 (179)
T PF13908_consen 80 IIVGVIC 86 (179)
T ss_pred eeeehhh
Confidence 3333333
No 169
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.48 E-value=8.2 Score=34.93 Aligned_cols=44 Identities=23% Similarity=0.474 Sum_probs=32.5
Q ss_pred CcccccccccccCCCc--eEEcCCCCcccChHHHHHHHhcCCCCccc
Q 027813 125 DTECVICLSNFLPGER--VRMLPICNHGFHVRCIDKWLRSHSSCPKC 169 (218)
Q Consensus 125 ~~~CaICle~f~~~~~--vr~lp~C~H~FH~~CI~~Wl~~~~~CP~C 169 (218)
-..|+.|.--++..+. ...-. |||.|+..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 3578888776654442 33445 89999999999998888877555
No 170
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=50.93 E-value=13 Score=23.45 Aligned_cols=35 Identities=20% Similarity=0.417 Sum_probs=25.0
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHH
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWL 160 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl 160 (218)
..|.+|-..|.....-..-..||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 57999988887644333334499999999977654
No 171
>PTZ00370 STEVOR; Provisional
Probab=50.78 E-value=21 Score=30.95 Aligned_cols=8 Identities=13% Similarity=0.268 Sum_probs=3.0
Q ss_pred HHHhhccc
Q 027813 75 CVFIRCSR 82 (218)
Q Consensus 75 ~~~~R~~~ 82 (218)
|.++||.+
T Consensus 277 wlyrrRK~ 284 (296)
T PTZ00370 277 WLYRRRKN 284 (296)
T ss_pred HHHHhhcc
Confidence 33344433
No 172
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=48.63 E-value=7.9 Score=21.35 Aligned_cols=16 Identities=25% Similarity=0.708 Sum_probs=8.3
Q ss_pred CCcccccccccccccc
Q 027813 165 SCPKCRRCLIETCENI 180 (218)
Q Consensus 165 ~CP~CR~~l~~~~~~~ 180 (218)
+||.|-..++...+++
T Consensus 1 ~CP~C~s~l~~~~~ev 16 (28)
T PF03119_consen 1 TCPVCGSKLVREEGEV 16 (28)
T ss_dssp B-TTT--BEEE-CCTT
T ss_pred CcCCCCCEeEcCCCCE
Confidence 4999999888654443
No 173
>PHA02849 putative transmembrane protein; Provisional
Probab=47.99 E-value=49 Score=22.97 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=10.1
Q ss_pred CCCCChhHHHHHHHHHHHH
Q 027813 45 KSCLHSNVVAVLSFLICSL 63 (218)
Q Consensus 45 ~~~f~~~viiil~ill~~l 63 (218)
+.+|+..+++++.++++.+
T Consensus 9 d~~f~~g~v~vi~v~v~vI 27 (82)
T PHA02849 9 DIEFDAGAVTVILVFVLVI 27 (82)
T ss_pred ccccccchHHHHHHHHHHH
Confidence 4556666655555544443
No 174
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=47.87 E-value=29 Score=22.52 Aligned_cols=46 Identities=24% Similarity=0.684 Sum_probs=33.5
Q ss_pred cccccccccccCCC-ceEEcCCCC--cccChHHHHHHHhcCCCCcccccccccc
Q 027813 126 TECVICLSNFLPGE-RVRMLPICN--HGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 126 ~~CaICle~f~~~~-~vr~lp~C~--H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
..|-.|-.++..+. .-++ |. .-|+.+|.+.-| +..||.|--.|+..
T Consensus 6 pnCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 45777777776655 3333 54 679999999866 67899998887754
No 175
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.09 E-value=13 Score=31.57 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=28.2
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHh
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR 161 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~ 161 (218)
..-+.|+.||..+.+ ..+.+ =||+|..+||-+++.
T Consensus 41 K~FdcCsLtLqPc~d---Pvit~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRD---PVITP-DGYLFDREAILEYIL 75 (303)
T ss_pred CCcceeeeecccccC---CccCC-CCeeeeHHHHHHHHH
Confidence 345799999999866 44556 799999999999974
No 177
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=46.79 E-value=14 Score=32.07 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=10.3
Q ss_pred hhhhhhcccchhhhccCCC
Q 027813 12 LPDFLGKFQSRKLLIQNPH 30 (218)
Q Consensus 12 ~~~~~~~~~sr~lL~~~~~ 30 (218)
|-|.+++.--=.||-.+..
T Consensus 244 ~gDLIgDLGLD~LLGe~Gl 262 (305)
T PF04639_consen 244 FGDLIGDLGLDWLLGENGL 262 (305)
T ss_pred HHHHHHhcccccccCcccc
Confidence 4455566555556655533
No 178
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=46.60 E-value=31 Score=30.83 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027813 54 AVLSFLICSLICSLGFHFLLKCVFIRCSR 82 (218)
Q Consensus 54 iil~ill~~li~~l~l~~i~r~~~~R~~~ 82 (218)
.|++.++++++++|++++++-. +|.+|
T Consensus 311 ~IiaSiIAIvvIVLIMvIIYLI--LRYRR 337 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVIIYLI--LRYRR 337 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhhh
Confidence 4444555555656655555444 45444
No 179
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=46.54 E-value=11 Score=21.41 Aligned_cols=19 Identities=21% Similarity=0.488 Sum_probs=11.9
Q ss_pred CCcccChHHHHHHHhcCCCCccccc
Q 027813 147 CNHGFHVRCIDKWLRSHSSCPKCRR 171 (218)
Q Consensus 147 C~H~FH~~CI~~Wl~~~~~CP~CR~ 171 (218)
|||+|-..- ....||+|..
T Consensus 7 CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 7 CGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred CCCEECCCc------CCCcCcCCCC
Confidence 666665443 3447999954
No 180
>PTZ00046 rifin; Provisional
Probab=46.39 E-value=31 Score=30.96 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027813 54 AVLSFLICSLICSLGFHFLLKCVFIRCSR 82 (218)
Q Consensus 54 iil~ill~~li~~l~l~~i~r~~~~R~~~ 82 (218)
.|++.++++++++|++++++-. +|.+|
T Consensus 316 aIiaSiiAIvVIVLIMvIIYLI--LRYRR 342 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYLI--LRYRR 342 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhhh
Confidence 3444445555555655555444 45444
No 181
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=46.36 E-value=73 Score=20.81 Aligned_cols=13 Identities=8% Similarity=0.480 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 027813 64 ICSLGFHFLLKCV 76 (218)
Q Consensus 64 i~~l~l~~i~r~~ 76 (218)
++.+.+.+++|..
T Consensus 18 l~~~~Ftl~IRri 30 (58)
T PF13314_consen 18 LFGASFTLFIRRI 30 (58)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344455544
No 182
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=45.31 E-value=53 Score=29.84 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=16.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 44 AKSCLHSNVVAVLSFLICSLICSLGFHFLLKCV 76 (218)
Q Consensus 44 ~~~~f~~~viiil~ill~~li~~l~l~~i~r~~ 76 (218)
.+.+|...+++.++|.++++++++++..++-|+
T Consensus 277 p~R~y~~d~~vtl~iPl~i~llL~llLs~Imc~ 309 (386)
T PF05510_consen 277 PGRDYFPDFLVTLAIPLIIALLLLLLLSYIMCC 309 (386)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 345566666555555554444444343444444
No 183
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=45.30 E-value=7 Score=24.83 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=6.9
Q ss_pred CCccccccccccc
Q 027813 165 SCPKCRRCLIETC 177 (218)
Q Consensus 165 ~CP~CR~~l~~~~ 177 (218)
.||+|.++|.+..
T Consensus 22 ~CPlC~r~l~~e~ 34 (54)
T PF04423_consen 22 CCPLCGRPLDEEH 34 (54)
T ss_dssp E-TTT--EE-HHH
T ss_pred cCCCCCCCCCHHH
Confidence 7999998887653
No 184
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=45.26 E-value=3.5 Score=30.70 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcc
Q 027813 68 GFHFLLKCVFIRCS 81 (218)
Q Consensus 68 ~l~~i~r~~~~R~~ 81 (218)
++.+++.|++.|++
T Consensus 37 giLLliGCWYckRR 50 (118)
T PF14991_consen 37 GILLLIGCWYCKRR 50 (118)
T ss_dssp --------------
T ss_pred HHHHHHhheeeeec
Confidence 33344445544433
No 185
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=45.26 E-value=26 Score=30.94 Aligned_cols=54 Identities=24% Similarity=0.517 Sum_probs=36.4
Q ss_pred CCCCccccccccccc---------------CCC-ceEEcCCCCcccChHHHHHHHhc---------CCCCcccccccccc
Q 027813 122 PGLDTECVICLSNFL---------------PGE-RVRMLPICNHGFHVRCIDKWLRS---------HSSCPKCRRCLIET 176 (218)
Q Consensus 122 ~~~~~~CaICle~f~---------------~~~-~vr~lp~C~H~FH~~CI~~Wl~~---------~~~CP~CR~~l~~~ 176 (218)
+..+.+|++|+..=. .|- .--..| |||+--..-..-|-+. +..||.|-..|.-+
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 344689999997521 010 112357 9999999999999753 34599998777644
No 186
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=44.99 E-value=19 Score=35.40 Aligned_cols=50 Identities=30% Similarity=0.601 Sum_probs=32.9
Q ss_pred CCCCCCcccccccccccC----CC-----ceEEcCCCCcccChHHHHHHHhcCCCCccccccc
Q 027813 120 KLPGLDTECVICLSNFLP----GE-----RVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCL 173 (218)
Q Consensus 120 ~~~~~~~~CaICle~f~~----~~-----~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l 173 (218)
+.+..+..|+-|...|-. |. ..-+.|.|+|.-|.+=|.. ...||+|...+
T Consensus 1126 ~i~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1126 KIDPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSME 1184 (1189)
T ss_pred cCCccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChh
Confidence 345566788888888732 11 1223455999999887654 57899996544
No 187
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=43.68 E-value=11 Score=24.76 Aligned_cols=15 Identities=20% Similarity=0.716 Sum_probs=11.5
Q ss_pred CCCCccccccccccc
Q 027813 163 HSSCPKCRRCLIETC 177 (218)
Q Consensus 163 ~~~CP~CR~~l~~~~ 177 (218)
...||+|..+.....
T Consensus 39 ~p~CPlC~s~M~~~~ 53 (59)
T PF14169_consen 39 EPVCPLCKSPMVSGT 53 (59)
T ss_pred CccCCCcCCccccce
Confidence 457999998887653
No 188
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=43.58 E-value=18 Score=31.86 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=31.6
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcC---CCCccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH---SSCPKC 169 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~---~~CP~C 169 (218)
..|++=-+.-.+.....++. |||+.-.+-++.--++. ..||.|
T Consensus 337 FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 337 FICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 57887666555555566777 99999999998865543 359999
No 189
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=43.50 E-value=29 Score=28.20 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=9.8
Q ss_pred hHHHHHHH--hcCCCCcc
Q 027813 153 VRCIDKWL--RSHSSCPK 168 (218)
Q Consensus 153 ~~CI~~Wl--~~~~~CP~ 168 (218)
.+-+..|| .++..+|.
T Consensus 126 G~~~R~~L~~Lr~~~~p~ 143 (186)
T PF07406_consen 126 GENFRSYLLDLRNSSTPL 143 (186)
T ss_pred cccHHHHHHHHHhccCCc
Confidence 55678887 44555554
No 190
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=43.33 E-value=15 Score=24.67 Aligned_cols=12 Identities=50% Similarity=1.317 Sum_probs=8.8
Q ss_pred ccChHHHHHHHh
Q 027813 150 GFHVRCIDKWLR 161 (218)
Q Consensus 150 ~FH~~CI~~Wl~ 161 (218)
.||..|+..|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999985
No 191
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.66 E-value=71 Score=21.74 Aligned_cols=23 Identities=22% Similarity=0.024 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027813 53 VAVLSFLICSLICSLGFHFLLKC 75 (218)
Q Consensus 53 iiil~ill~~li~~l~l~~i~r~ 75 (218)
+++++++.+++.++.++++..++
T Consensus 6 ail~ivl~ll~G~~~G~fiark~ 28 (71)
T COG3763 6 AILLIVLALLAGLIGGFFIARKQ 28 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444443333
No 192
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=41.31 E-value=22 Score=19.54 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=9.8
Q ss_pred ccccccccccCCCceEEcCCCCcccChHHH
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGFHVRCI 156 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~FH~~CI 156 (218)
.|.+|-+.... +..-.-+.|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 57788877655 233333349999999985
No 193
>PRK00523 hypothetical protein; Provisional
Probab=40.69 E-value=72 Score=21.82 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 52 VVAVLSFLICSLICSLGFHFLLKCV 76 (218)
Q Consensus 52 viiil~ill~~li~~l~l~~i~r~~ 76 (218)
++++++++++++-++.++++..++.
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~ 30 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMF 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 194
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=40.43 E-value=16 Score=34.64 Aligned_cols=35 Identities=23% Similarity=0.468 Sum_probs=24.7
Q ss_pred CCCcccccccccccCC-----------CceEEcCCCCcccChHHHHHH
Q 027813 123 GLDTECVICLSNFLPG-----------ERVRMLPICNHGFHVRCIDKW 159 (218)
Q Consensus 123 ~~~~~CaICle~f~~~-----------~~vr~lp~C~H~FH~~CI~~W 159 (218)
+....|+||-|+|+.- +.|.+. =|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le--~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE--FGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec--cCceeeccccchH
Confidence 4457899999999531 223332 4889999998874
No 195
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.10 E-value=11 Score=34.76 Aligned_cols=39 Identities=18% Similarity=0.361 Sum_probs=28.9
Q ss_pred CCCcccccccccccCCCce-----EEcCCCCcccChHHHHHHHhc
Q 027813 123 GLDTECVICLSNFLPGERV-----RMLPICNHGFHVRCIDKWLRS 162 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~v-----r~lp~C~H~FH~~CI~~Wl~~ 162 (218)
.+...|+.|....+.+... .... |+|.||+.|+..|-..
T Consensus 224 ~ntk~CP~c~~~iek~~gc~~~~~~~~~-c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 224 ANTKECPKCKVPIEKDGGCNHMTCKSAS-CKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCccCCCcccchhccCCccccccccCC-cCCeeceeeecccccc
Confidence 3445699999998776622 2223 9999999999999755
No 196
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.67 E-value=56 Score=23.50 Aligned_cols=15 Identities=27% Similarity=0.565 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHHHHH
Q 027813 50 SNVVAVLSFLICSLI 64 (218)
Q Consensus 50 ~~viiil~ill~~li 64 (218)
+..+++|.+++++++
T Consensus 3 SK~~llL~l~LA~lL 17 (95)
T PF07172_consen 3 SKAFLLLGLLLAALL 17 (95)
T ss_pred hhHHHHHHHHHHHHH
Confidence 344455544444433
No 197
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=37.26 E-value=11 Score=34.73 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 027813 60 ICSLICSLGFHFLLKCVFIRCS 81 (218)
Q Consensus 60 l~~li~~l~l~~i~r~~~~R~~ 81 (218)
++++++++++.+++.|.++|++
T Consensus 360 gvavlivVv~viv~vc~~~rrr 381 (439)
T PF02480_consen 360 GVAVLIVVVGVIVWVCLRCRRR 381 (439)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHhheeeeehhc
Confidence 3344444444555556533333
No 198
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=36.73 E-value=22 Score=34.61 Aligned_cols=51 Identities=24% Similarity=0.552 Sum_probs=33.8
Q ss_pred CCCcccccccccccCCCc-------eEEcCCCCcccChHHHHHH--H--------hcCCCCcccccccc
Q 027813 123 GLDTECVICLSNFLPGER-------VRMLPICNHGFHVRCIDKW--L--------RSHSSCPKCRRCLI 174 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~-------vr~lp~C~H~FH~~CI~~W--l--------~~~~~CP~CR~~l~ 174 (218)
.....|-||-|+=.+++- +-.-. |+-.||..|-..- | .+-+.|-.|+.-+-
T Consensus 115 RfnKtCYIC~E~GrpnkA~~GACMtCNKs~-CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hfs 182 (900)
T KOG0956|consen 115 RFNKTCYICNEEGRPNKAAKGACMTCNKSG-CKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFS 182 (900)
T ss_pred hhcceeeeecccCCccccccccceeccccc-chhhhhhhHhhhhccceeccccccccceechhHHHHHH
Confidence 345799999988554431 11223 8899999998765 1 23356999976554
No 199
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=36.05 E-value=12 Score=33.91 Aligned_cols=51 Identities=22% Similarity=0.423 Sum_probs=0.0
Q ss_pred CCcccccccccccC-------------C---CceEEcCCCCcccChHHHHHHHhc---------CCCCccccccccc
Q 027813 124 LDTECVICLSNFLP-------------G---ERVRMLPICNHGFHVRCIDKWLRS---------HSSCPKCRRCLIE 175 (218)
Q Consensus 124 ~~~~CaICle~f~~-------------~---~~vr~lp~C~H~FH~~CI~~Wl~~---------~~~CP~CR~~l~~ 175 (218)
...+|++|+..-.- + -..-..| |||+--.....-|-+. +..||.|-..|..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 36799999965311 1 1123467 9999999999999643 2359999877763
No 200
>PRK05978 hypothetical protein; Provisional
Probab=35.76 E-value=18 Score=28.35 Aligned_cols=24 Identities=17% Similarity=0.465 Sum_probs=19.0
Q ss_pred CcccChHHHHHHHhcCCCCcccccccccc
Q 027813 148 NHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 148 ~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
||+|+ .+|+.+.+||.|-.++...
T Consensus 42 G~LF~-----g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 42 GKLFR-----AFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred Ccccc-----cccccCCCccccCCccccC
Confidence 47776 7888999999997777644
No 201
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=34.86 E-value=22 Score=30.40 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=29.9
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCC--CCccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHS--SCPKC 169 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~--~CP~C 169 (218)
...|+|=...+.. ..+-.+|||+|-.+=|...+.... .||+=
T Consensus 176 s~rdPis~~~I~n---PviSkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVN---PVISKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhc---hhhhcCcCcchhhhhHHHHhccCceeecccc
Confidence 3678887666544 334445999999999999987644 37763
No 202
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=34.59 E-value=8.8 Score=33.31 Aligned_cols=35 Identities=23% Similarity=0.592 Sum_probs=28.2
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHH
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWL 160 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl 160 (218)
-...|+-|.+-+-+.+.||.- =.|+||.+|+...+
T Consensus 91 fGTKCsaC~~GIpPtqVVRkA--qd~VYHl~CF~C~i 125 (383)
T KOG4577|consen 91 FGTKCSACQEGIPPTQVVRKA--QDFVYHLHCFACFI 125 (383)
T ss_pred hCCcchhhcCCCChHHHHHHh--hcceeehhhhhhHh
Confidence 346899999998887777765 68999999987665
No 203
>PHA02819 hypothetical protein; Provisional
Probab=34.57 E-value=1e+02 Score=20.97 Aligned_cols=7 Identities=14% Similarity=0.662 Sum_probs=3.3
Q ss_pred chhhhhh
Q 027813 11 HLPDFLG 17 (218)
Q Consensus 11 ~~~~~~~ 17 (218)
-|-+|++
T Consensus 19 DFnnFI~ 25 (71)
T PHA02819 19 DFNNFIN 25 (71)
T ss_pred HHHHHHH
Confidence 4444544
No 204
>PHA02844 putative transmembrane protein; Provisional
Probab=34.00 E-value=1e+02 Score=21.20 Aligned_cols=7 Identities=14% Similarity=0.648 Sum_probs=3.2
Q ss_pred chhhhhh
Q 027813 11 HLPDFLG 17 (218)
Q Consensus 11 ~~~~~~~ 17 (218)
-|-+|++
T Consensus 19 DFnnFI~ 25 (75)
T PHA02844 19 DFNNFID 25 (75)
T ss_pred HHHHHHH
Confidence 3444444
No 205
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=33.91 E-value=45 Score=22.25 Aligned_cols=14 Identities=7% Similarity=0.256 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q 027813 52 VVAVLSFLICSLIC 65 (218)
Q Consensus 52 viiil~ill~~li~ 65 (218)
||++++|++.++++
T Consensus 1 MWIiiSIvLai~lL 14 (66)
T PF07438_consen 1 MWIIISIVLAIALL 14 (66)
T ss_pred ChhhHHHHHHHHHH
Confidence 45666666655543
No 206
>PLN02189 cellulose synthase
Probab=33.80 E-value=43 Score=34.26 Aligned_cols=51 Identities=20% Similarity=0.386 Sum_probs=33.3
Q ss_pred CCccccccccccc---CCCceEEcCCCCcccChHHHHHHHh-cCCCCcccccccc
Q 027813 124 LDTECVICLSNFL---PGERVRMLPICNHGFHVRCIDKWLR-SHSSCPKCRRCLI 174 (218)
Q Consensus 124 ~~~~CaICle~f~---~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~~CP~CR~~l~ 174 (218)
+...|.||-++.. +|+.-.-...|+--.|..|.+-=.+ .++.||.|+...-
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3458999999975 3333222233666688999843332 3678999988665
No 207
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=33.78 E-value=1.3e+02 Score=20.61 Aligned_cols=6 Identities=17% Similarity=0.750 Sum_probs=2.4
Q ss_pred hhhhhh
Q 027813 12 LPDFLG 17 (218)
Q Consensus 12 ~~~~~~ 17 (218)
|-+|++
T Consensus 20 f~~Fi~ 25 (72)
T PF12575_consen 20 FNNFIN 25 (72)
T ss_pred HHHHHH
Confidence 334443
No 208
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=33.10 E-value=1.3e+02 Score=20.45 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 027813 59 LICSLICSLGFH 70 (218)
Q Consensus 59 ll~~li~~l~l~ 70 (218)
+++++++.+++.
T Consensus 66 ~~~Gl~lgi~~~ 77 (82)
T PF13807_consen 66 LFLGLILGIGLA 77 (82)
T ss_pred HHHHHHHHHHHH
Confidence 333434334333
No 209
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=33.08 E-value=21 Score=34.82 Aligned_cols=35 Identities=26% Similarity=0.516 Sum_probs=27.5
Q ss_pred ceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 140 RVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 140 ~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
.+...|.|.-+||.+=++.-..++..||.||.+--
T Consensus 1043 ~it~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~d 1077 (1081)
T KOG1538|consen 1043 SITMCPSCFQMFHSEDFELLVLQKGHCPFCRTSKD 1077 (1081)
T ss_pred hhhhCchHHhhhccchhhHHHHhcCCCCccccccc
Confidence 34455668889998888877788889999998754
No 210
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=32.83 E-value=29 Score=31.06 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=21.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 44 AKSCLHSNVVAVLSFLICSLICSLGFHFLLKCV 76 (218)
Q Consensus 44 ~~~~f~~~viiil~ill~~li~~l~l~~i~r~~ 76 (218)
+...|+..+++|+++.+.+-++++++.-++.|.
T Consensus 311 P~d~~S~lvi~i~~vgLG~P~l~li~Ggl~v~~ 343 (350)
T PF15065_consen 311 PVDSFSPLVIMIMAVGLGVPLLLLILGGLYVCL 343 (350)
T ss_pred CccchhHHHHHHHHHHhhHHHHHHHHhhheEEE
Confidence 446788888888777666655555554555454
No 211
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=32.61 E-value=37 Score=29.54 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 027813 54 AVLSFLICSL 63 (218)
Q Consensus 54 iil~ill~~l 63 (218)
+++++.|++|
T Consensus 275 IaVG~~La~l 284 (306)
T PF01299_consen 275 IAVGAALAGL 284 (306)
T ss_pred HHHHHHHHHH
Confidence 3344333333
No 212
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=32.56 E-value=89 Score=24.49 Aligned_cols=6 Identities=0% Similarity=0.052 Sum_probs=2.3
Q ss_pred cccccc
Q 027813 171 RCLIET 176 (218)
Q Consensus 171 ~~l~~~ 176 (218)
.++.+.
T Consensus 121 npvtdr 126 (189)
T PF05568_consen 121 NPVTDR 126 (189)
T ss_pred Cccccc
Confidence 333333
No 213
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=32.46 E-value=15 Score=23.47 Aligned_cols=19 Identities=32% Similarity=0.740 Sum_probs=14.4
Q ss_pred eEEcCCCCcccChHHHHHH
Q 027813 141 VRMLPICNHGFHVRCIDKW 159 (218)
Q Consensus 141 vr~lp~C~H~FH~~CI~~W 159 (218)
...-+.|+|.|+..|-..|
T Consensus 40 ~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 40 RVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred eeECCCCCCeECCCCCCcC
Confidence 3444448999999998887
No 214
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=31.63 E-value=58 Score=27.05 Aligned_cols=31 Identities=6% Similarity=0.072 Sum_probs=19.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 46 SCLHSNVVAVLSFLICSLICSLGFHFLLKCV 76 (218)
Q Consensus 46 ~~f~~~viiil~ill~~li~~l~l~~i~r~~ 76 (218)
.++...-|+++.++++++++++++..+.|-.
T Consensus 173 ~~~~~~~W~i~~~~~i~~i~~i~i~~irR~i 203 (215)
T PHA02947 173 LPYSNKPWFIVGVVIILIIFVIAICSIKRKI 203 (215)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3454435666677777777777666666554
No 215
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=31.30 E-value=41 Score=29.26 Aligned_cols=26 Identities=15% Similarity=-0.051 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027813 54 AVLSFLICSLICSLGFHFLLKCVFIRC 80 (218)
Q Consensus 54 iil~ill~~li~~l~l~~i~r~~~~R~ 80 (218)
++-+++.++|..+++ +.++.|+..|+
T Consensus 272 ~vPIaVG~~La~lvl-ivLiaYli~Rr 297 (306)
T PF01299_consen 272 LVPIAVGAALAGLVL-IVLIAYLIGRR 297 (306)
T ss_pred hHHHHHHHHHHHHHH-HHHHhheeEec
Confidence 444445555444444 44444442333
No 216
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=31.14 E-value=23 Score=37.50 Aligned_cols=50 Identities=26% Similarity=0.567 Sum_probs=38.8
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCC----CCccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHS----SCPKCRRCL 173 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~----~CP~CR~~l 173 (218)
.....|-+|....++.+.+.-.. |.-.||.-|+..-+..-. .||-||..-
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~-c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDE-CLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHh-hhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 44578999999987755554444 899999999999886533 599998766
No 217
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=31.06 E-value=28 Score=22.04 Aligned_cols=22 Identities=32% Similarity=0.857 Sum_probs=12.7
Q ss_pred CCcccChHHHHHHHhcCCCCccc
Q 027813 147 CNHGFHVRCIDKWLRSHSSCPKC 169 (218)
Q Consensus 147 C~H~FH~~CI~~Wl~~~~~CP~C 169 (218)
|||.|...=-++ ......||.|
T Consensus 34 Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCeeEccHhhh-ccCCCCCCCC
Confidence 677665442222 2456679987
No 218
>PHA02657 hypothetical protein; Provisional
Probab=31.05 E-value=1.2e+02 Score=21.57 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=13.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHH
Q 027813 46 SCLHSNVVAVLSFLICSLICSLGFHF 71 (218)
Q Consensus 46 ~~f~~~viiil~ill~~li~~l~l~~ 71 (218)
.+|.+.+++.+.++.+.+++++.+++
T Consensus 22 ~~~~~imVitvfv~vI~il~flLLYL 47 (95)
T PHA02657 22 INFESILVFTIFIFVVCILIYLLIYL 47 (95)
T ss_pred ecchhhhHHHHHHHHHHHHHHHHHHH
Confidence 45666555555555555554444433
No 219
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=30.77 E-value=5 Score=27.33 Aligned_cols=40 Identities=20% Similarity=0.433 Sum_probs=19.4
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
..|+.|..++.... +|.++..|-.. ++....||-|..+|.
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHHH
Confidence 36888887753322 55555566443 344566999977665
No 220
>PRK11827 hypothetical protein; Provisional
Probab=30.54 E-value=16 Score=24.08 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=15.9
Q ss_pred HHHHhcCCCCcccccccccc
Q 027813 157 DKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 157 ~~Wl~~~~~CP~CR~~l~~~ 176 (218)
+.||..--.||+|+..|.-.
T Consensus 2 d~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred ChHHHhheECCCCCCcCeEc
Confidence 56777777899999988753
No 221
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.42 E-value=21 Score=31.04 Aligned_cols=36 Identities=17% Similarity=0.471 Sum_probs=28.1
Q ss_pred CCcccccccccccCCCceEEcCCC----CcccChHHHHHHHhcC
Q 027813 124 LDTECVICLSNFLPGERVRMLPIC----NHGFHVRCIDKWLRSH 163 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C----~H~FH~~CI~~Wl~~~ 163 (218)
.-..|.+|.|.+++..- +. | .|.||--|-.+-++.+
T Consensus 267 apLcCTLC~ERLEDTHF---VQ-CPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHF---VQ-CPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CceeehhhhhhhccCce---ee-cCCCcccceecccCHHHHHhh
Confidence 33689999999977443 33 6 6999999999988764
No 222
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=30.34 E-value=98 Score=24.05 Aligned_cols=9 Identities=22% Similarity=0.360 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 027813 66 SLGFHFLLK 74 (218)
Q Consensus 66 ~l~l~~i~r 74 (218)
..+++.++|
T Consensus 133 ~~giy~~~r 141 (145)
T PF10661_consen 133 CGGIYVVLR 141 (145)
T ss_pred HHHHHHHHH
Confidence 334444444
No 223
>PHA02650 hypothetical protein; Provisional
Probab=30.29 E-value=1.2e+02 Score=21.18 Aligned_cols=8 Identities=13% Similarity=0.497 Sum_probs=3.7
Q ss_pred chhhhhhc
Q 027813 11 HLPDFLGK 18 (218)
Q Consensus 11 ~~~~~~~~ 18 (218)
-|-+|++-
T Consensus 19 DFnnFI~V 26 (81)
T PHA02650 19 DFNNFIDV 26 (81)
T ss_pred HHHHHHHH
Confidence 44445443
No 224
>PHA03054 IMV membrane protein; Provisional
Probab=30.09 E-value=1.3e+02 Score=20.43 Aligned_cols=7 Identities=43% Similarity=0.866 Sum_probs=3.4
Q ss_pred chhhhhh
Q 027813 11 HLPDFLG 17 (218)
Q Consensus 11 ~~~~~~~ 17 (218)
-|-+|++
T Consensus 19 Df~~Fi~ 25 (72)
T PHA03054 19 DLTDFIE 25 (72)
T ss_pred HHHHHHH
Confidence 4445554
No 225
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=29.97 E-value=75 Score=22.10 Aligned_cols=51 Identities=20% Similarity=0.366 Sum_probs=19.1
Q ss_pred CCcccccccccccC---CCceEEcCCCCcccChHHHHHHHhc-CCCCcccccccc
Q 027813 124 LDTECVICLSNFLP---GERVRMLPICNHGFHVRCIDKWLRS-HSSCPKCRRCLI 174 (218)
Q Consensus 124 ~~~~CaICle~f~~---~~~vr~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~ 174 (218)
+...|.||-++.-. |+...---.|+--.+..|.+-=.+. ++.||.|+...-
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 34689999988743 3322111126666677787654443 678999987654
No 226
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=29.55 E-value=1.3e+02 Score=20.65 Aligned_cols=9 Identities=11% Similarity=0.242 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 027813 68 GFHFLLKCV 76 (218)
Q Consensus 68 ~l~~i~r~~ 76 (218)
.+.++..|.
T Consensus 19 p~wl~lHY~ 27 (75)
T TIGR02976 19 PLWLILHYR 27 (75)
T ss_pred HHHHHHHHH
Confidence 334444444
No 227
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=29.37 E-value=32 Score=24.84 Aligned_cols=33 Identities=30% Similarity=0.662 Sum_probs=21.9
Q ss_pred CcccccccccccCCCceEE-cCCCCcccChHHHHHH
Q 027813 125 DTECVICLSNFLPGERVRM-LPICNHGFHVRCIDKW 159 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~-lp~C~H~FH~~CI~~W 159 (218)
...|.||-.. .|..++- -+.|...||..|...+
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHHC
Confidence 4689999887 3332221 1238889999997653
No 228
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=29.31 E-value=1.1e+02 Score=23.32 Aligned_cols=8 Identities=0% Similarity=0.027 Sum_probs=3.8
Q ss_pred CCCCChhH
Q 027813 45 KSCLHSNV 52 (218)
Q Consensus 45 ~~~f~~~v 52 (218)
+..++..+
T Consensus 32 ~tpWNysi 39 (125)
T PF15048_consen 32 ATPWNYSI 39 (125)
T ss_pred CCCcchHH
Confidence 34455444
No 229
>PF15353 HECA: Headcase protein family homologue
Probab=28.92 E-value=31 Score=25.42 Aligned_cols=13 Identities=31% Similarity=0.907 Sum_probs=12.0
Q ss_pred CCcccChHHHHHH
Q 027813 147 CNHGFHVRCIDKW 159 (218)
Q Consensus 147 C~H~FH~~CI~~W 159 (218)
.++..|.+|++.|
T Consensus 40 ~~~~MH~~CF~~w 52 (107)
T PF15353_consen 40 FGQYMHRECFEKW 52 (107)
T ss_pred CCCchHHHHHHHH
Confidence 4799999999999
No 230
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=28.92 E-value=47 Score=28.60 Aligned_cols=19 Identities=32% Similarity=0.814 Sum_probs=14.5
Q ss_pred ccChHHHHHH-HhcCCCCcc
Q 027813 150 GFHVRCIDKW-LRSHSSCPK 168 (218)
Q Consensus 150 ~FH~~CI~~W-l~~~~~CP~ 168 (218)
.=|.+|+..| +-.++.||-
T Consensus 56 RGHrdCFEK~HlIanQ~~pr 75 (285)
T PF06937_consen 56 RGHRDCFEKYHLIANQDCPR 75 (285)
T ss_pred cchHHHHHHHHHHHcCCCCc
Confidence 3478999999 455778883
No 231
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=28.66 E-value=74 Score=26.59 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 52 VVAVLSFLICSLICSLGFHFLLKCV 76 (218)
Q Consensus 52 viiil~ill~~li~~l~l~~i~r~~ 76 (218)
|+++++++.+++++++++..+.|-.
T Consensus 187 W~i~~~v~~i~~i~vv~i~~irR~i 211 (226)
T PHA02662 187 WTLLLAVAAVTVLGVVAVSLLRRAL 211 (226)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444436666666666666554
No 232
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=28.04 E-value=64 Score=23.61 Aligned_cols=24 Identities=29% Similarity=0.654 Sum_probs=18.4
Q ss_pred CcccChHHHHHHHhc---------CCCCccccc
Q 027813 148 NHGFHVRCIDKWLRS---------HSSCPKCRR 171 (218)
Q Consensus 148 ~H~FH~~CI~~Wl~~---------~~~CP~CR~ 171 (218)
.=.|+..||..++.. +-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 778999999988742 225999976
No 233
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=27.67 E-value=28 Score=29.38 Aligned_cols=42 Identities=29% Similarity=0.498 Sum_probs=30.7
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCC--Ccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSS--CPK 168 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~--CP~ 168 (218)
-+..|+|=+..+.- ..+-.+|+|.|-.+-|...++...+ ||.
T Consensus 188 ~~nrCpitl~p~~~---pils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 188 LSNRCPITLNPDFY---PILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred hcccCCcccCcchh---HHHHhhhcccccHHHHHHHhcCCceeecch
Confidence 34689998877533 3344559999999999999886554 663
No 234
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=27.52 E-value=51 Score=24.10 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=27.0
Q ss_pred ccccccccccCCCceEEcCCCCcccChHHHHHHH
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGFHVRCIDKWL 160 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl 160 (218)
.|.||-+++-.|+....+.+ -..|..|+..=.
T Consensus 4 kC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~ 35 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK--GPVHYECFREKA 35 (101)
T ss_pred EEEecCCeeeecceEEEecC--CcEeHHHHHHHH
Confidence 69999999999988888764 678999988754
No 235
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=27.44 E-value=47 Score=24.60 Aligned_cols=46 Identities=20% Similarity=0.366 Sum_probs=27.3
Q ss_pred CCcccccccccccCC--CceEEcCCCCcccChHHHHHHHhcCC--CCccccc
Q 027813 124 LDTECVICLSNFLPG--ERVRMLPICNHGFHVRCIDKWLRSHS--SCPKCRR 171 (218)
Q Consensus 124 ~~~~CaICle~f~~~--~~vr~lp~C~H~FH~~CI~~Wl~~~~--~CP~CR~ 171 (218)
++..|++|...|..- .. .+-..|+|.++..|-.. ..+.. .|-+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~-~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRG-RVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTC-EEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCC-CcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 557999999987432 23 33444999999998544 11112 2888844
No 236
>PHA02935 Hypothetical protein; Provisional
Probab=27.26 E-value=2.1e+02 Score=23.78 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=8.8
Q ss_pred CCCChhHHHHHHHHHHHHHH
Q 027813 46 SCLHSNVVAVLSFLICSLIC 65 (218)
Q Consensus 46 ~~f~~~viiil~ill~~li~ 65 (218)
-+.+..+.++++..+.++++
T Consensus 308 mnvdnlimivlitmlsiiii 327 (349)
T PHA02935 308 MNVDNLIMIVLITMLSIIII 327 (349)
T ss_pred cccccchHHHHHHHHHHHHH
Confidence 34444444444444444433
No 237
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=26.82 E-value=13 Score=22.43 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=12.7
Q ss_pred CCcccChHHHHHHHhcCCCCccccc
Q 027813 147 CNHGFHVRCIDKWLRSHSSCPKCRR 171 (218)
Q Consensus 147 C~H~FH~~CI~~Wl~~~~~CP~CR~ 171 (218)
|||.|-..--..= .....||.|..
T Consensus 11 Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 11 CGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 7777654321000 22446999977
No 238
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=26.45 E-value=1.4e+02 Score=27.24 Aligned_cols=32 Identities=3% Similarity=0.012 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 45 KSCLHSNVVAVLSFLICSLICSLGFHFLLKCV 76 (218)
Q Consensus 45 ~~~f~~~viiil~ill~~li~~l~l~~i~r~~ 76 (218)
..++-....+.++|.+.+.++++++..++-|+
T Consensus 290 ~Rdyy~df~~tfaIpl~Valll~~~La~imc~ 321 (449)
T KOG4482|consen 290 PRDYYGDFLHTFAIPLGVALLLVLALAYIMCC 321 (449)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555554444444444444454
No 239
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=26.40 E-value=7.5 Score=24.64 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=19.1
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRR 171 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~ 171 (218)
..|+.|-++|... .| +.|+.-.+.-+ .+...||+|..
T Consensus 3 f~CP~C~~~~~~~----~L--~~H~~~~H~~~---~~~v~CPiC~~ 39 (54)
T PF05605_consen 3 FTCPYCGKGFSES----SL--VEHCEDEHRSE---SKNVVCPICSS 39 (54)
T ss_pred cCCCCCCCccCHH----HH--HHHHHhHCcCC---CCCccCCCchh
Confidence 4799998855432 23 33332211111 12346999975
No 240
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=26.18 E-value=68 Score=24.72 Aligned_cols=14 Identities=36% Similarity=0.717 Sum_probs=11.4
Q ss_pred CCCccccccccccc
Q 027813 164 SSCPKCRRCLIETC 177 (218)
Q Consensus 164 ~~CP~CR~~l~~~~ 177 (218)
..||.|...|.+.+
T Consensus 124 f~Cp~Cg~~l~~~d 137 (147)
T smart00531 124 FTCPRCGEELEEDD 137 (147)
T ss_pred EECCCCCCEEEEcC
Confidence 66999999988763
No 241
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=25.98 E-value=34 Score=28.09 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 027813 64 ICSLGFHFLLKCV 76 (218)
Q Consensus 64 i~~l~l~~i~r~~ 76 (218)
|.+|+..++++.+
T Consensus 112 iaAliTtlvlK~C 124 (205)
T PF15298_consen 112 IAALITTLVLKNC 124 (205)
T ss_pred HHHhhhhhhhhhh
Confidence 3333344444433
No 242
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=25.87 E-value=50 Score=30.14 Aligned_cols=25 Identities=16% Similarity=0.225 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 52 VVAVLSFLICSLICSLGFHFLLKCV 76 (218)
Q Consensus 52 viiil~ill~~li~~l~l~~i~r~~ 76 (218)
-+||+++|+.++|+++....++...
T Consensus 386 ~~i~~avl~p~~il~~~~~~~~~~v 410 (436)
T PTZ00208 386 AMIILAVLVPAIILAIIAVAFFIMV 410 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheee
Confidence 4677778777777665444444333
No 243
>PRK14762 membrane protein; Provisional
Probab=25.86 E-value=1.2e+02 Score=16.33 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027813 53 VAVLSFLICSLICSLGF 69 (218)
Q Consensus 53 iiil~ill~~li~~l~l 69 (218)
+++.++++..++.+.++
T Consensus 6 w~i~iifligllvvtgv 22 (27)
T PRK14762 6 WAVLIIFLIGLLVVTGV 22 (27)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444555555444443
No 244
>PHA02692 hypothetical protein; Provisional
Probab=25.75 E-value=1.8e+02 Score=19.74 Aligned_cols=7 Identities=29% Similarity=0.762 Sum_probs=3.0
Q ss_pred chhhhhh
Q 027813 11 HLPDFLG 17 (218)
Q Consensus 11 ~~~~~~~ 17 (218)
-|-+|++
T Consensus 19 DF~~Fi~ 25 (70)
T PHA02692 19 DFEEFLN 25 (70)
T ss_pred HHHHHHH
Confidence 3444443
No 245
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=25.72 E-value=9.1 Score=33.08 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=20.6
Q ss_pred CCcccccccccccCCCceEEcC--CCCcccChHHHHHHHhcCCCCcccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLP--ICNHGFHVRCIDKWLRSHSSCPKCRRC 172 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp--~C~H~FH~~CI~~Wl~~~~~CP~CR~~ 172 (218)
....|+||=..-..+ .++.-. .=.|.+|.-|=..|--....||.|-..
T Consensus 171 ~~g~CPvCGs~P~~s-~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLS-VLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEE-EEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred cCCcCCCCCCcCceE-EEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 346999997663221 111111 125677788888897777889999543
No 246
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=25.64 E-value=1.2e+02 Score=20.11 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027813 55 VLSFLICSLICSLGFHFLLKCV 76 (218)
Q Consensus 55 il~ill~~li~~l~l~~i~r~~ 76 (218)
+-+++++++|++..-++..+++
T Consensus 7 iQii~l~AlI~~pLGyl~~~~~ 28 (62)
T PF11120_consen 7 IQIIILCALIFFPLGYLARRWL 28 (62)
T ss_pred HHHHHHHHHHHHhHHHHHHHHh
Confidence 3444444544444344444433
No 247
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.62 E-value=1e+02 Score=23.12 Aligned_cols=6 Identities=17% Similarity=0.584 Sum_probs=2.2
Q ss_pred HHHHHH
Q 027813 54 AVLSFL 59 (218)
Q Consensus 54 iil~il 59 (218)
++++++
T Consensus 96 ~il~~v 101 (116)
T KOG0860|consen 96 IILGLV 101 (116)
T ss_pred HHHHHH
Confidence 333333
No 248
>PHA03240 envelope glycoprotein M; Provisional
Probab=25.41 E-value=92 Score=26.04 Aligned_cols=9 Identities=11% Similarity=0.316 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 027813 52 VVAVLSFLI 60 (218)
Q Consensus 52 viiil~ill 60 (218)
+++|++|++
T Consensus 214 ~WIiilIIi 222 (258)
T PHA03240 214 AWIFIAIII 222 (258)
T ss_pred hHHHHHHHH
Confidence 334433333
No 249
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=25.27 E-value=62 Score=21.18 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=23.9
Q ss_pred CCcccccccccccC--CCceEEcCCCCcccChHHHHH
Q 027813 124 LDTECVICLSNFLP--GERVRMLPICNHGFHVRCIDK 158 (218)
Q Consensus 124 ~~~~CaICle~f~~--~~~vr~lp~C~H~FH~~CI~~ 158 (218)
....|+.|-..... ....-.-+.||+.+|.+-.-.
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA 63 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAA 63 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcHHHHH
Confidence 34689999888766 444555566888888775443
No 250
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=25.20 E-value=45 Score=23.00 Aligned_cols=32 Identities=34% Similarity=0.722 Sum_probs=21.6
Q ss_pred CcccccccccccCCCceEE-cCCCCcccChHHHHH
Q 027813 125 DTECVICLSNFLPGERVRM-LPICNHGFHVRCIDK 158 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~-lp~C~H~FH~~CI~~ 158 (218)
...|.+|-... |..+.- .+.|.-.||..|-..
T Consensus 36 ~~~C~~C~~~~--Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKG--GACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCC--CeEEEEeCCCCCcEEChHHHcc
Confidence 35899998762 333321 344999999999654
No 251
>PLN02436 cellulose synthase A
Probab=24.89 E-value=75 Score=32.72 Aligned_cols=50 Identities=22% Similarity=0.466 Sum_probs=32.4
Q ss_pred Cccccccccccc---CCCceEEcCCCCcccChHHHHHHHh-cCCCCcccccccc
Q 027813 125 DTECVICLSNFL---PGERVRMLPICNHGFHVRCIDKWLR-SHSSCPKCRRCLI 174 (218)
Q Consensus 125 ~~~CaICle~f~---~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~~CP~CR~~l~ 174 (218)
...|.||-++.. +|+.-.--..|+--.|..|.+-=.+ .++.||.|+...-
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 458999999973 3443222222556689999844332 3677999988665
No 252
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=24.84 E-value=1.4e+02 Score=22.90 Aligned_cols=7 Identities=14% Similarity=0.121 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 027813 52 VVAVLSF 58 (218)
Q Consensus 52 viiil~i 58 (218)
.++++++
T Consensus 23 Wwll~~l 29 (146)
T PF14316_consen 23 WWLLLAL 29 (146)
T ss_pred HHHHHHH
Confidence 3333333
No 253
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=24.82 E-value=3.4e+02 Score=22.93 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=17.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 48 LHSNVVAVLSFLICSLICSLGFHFLLKCV 76 (218)
Q Consensus 48 f~~~viiil~ill~~li~~l~l~~i~r~~ 76 (218)
..+.--+|+-|+++++++.+.++.++..+
T Consensus 183 spS~S~vilpvvIaliVitl~vf~LvgLy 211 (259)
T PF07010_consen 183 SPSYSSVILPVVIALIVITLSVFTLVGLY 211 (259)
T ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666655
No 254
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=24.72 E-value=1.1e+02 Score=19.68 Aligned_cols=11 Identities=0% Similarity=0.060 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 027813 52 VVAVLSFLICS 62 (218)
Q Consensus 52 viiil~ill~~ 62 (218)
+++|+++++.+
T Consensus 5 ~wlIIviVlgv 15 (55)
T PF11446_consen 5 PWLIIVIVLGV 15 (55)
T ss_pred hhHHHHHHHHH
Confidence 44444444433
No 255
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.57 E-value=13 Score=31.95 Aligned_cols=50 Identities=26% Similarity=0.507 Sum_probs=38.0
Q ss_pred CcccccccccccCCC---ceEEcCC-------CCcccChHHHHHHHhc-CCCCcccccccc
Q 027813 125 DTECVICLSNFLPGE---RVRMLPI-------CNHGFHVRCIDKWLRS-HSSCPKCRRCLI 174 (218)
Q Consensus 125 ~~~CaICle~f~~~~---~vr~lp~-------C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~ 174 (218)
...|.||...|..++ ..+++.. |+|-.+..|++.-+.. ...||.||....
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~~~ 267 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWSHI 267 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccceee
Confidence 467999999998432 2344444 9999999999998755 357999987643
No 256
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=24.54 E-value=38 Score=19.78 Aligned_cols=31 Identities=19% Similarity=0.566 Sum_probs=18.3
Q ss_pred EcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 143 MLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 143 ~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
+-+.||++||..=--+ +....|..|...|+.
T Consensus 3 ~C~~Cg~~Yh~~~~pP--~~~~~Cd~cg~~L~q 33 (36)
T PF05191_consen 3 ICPKCGRIYHIEFNPP--KVEGVCDNCGGELVQ 33 (36)
T ss_dssp EETTTTEEEETTTB----SSTTBCTTTTEBEBE
T ss_pred CcCCCCCccccccCCC--CCCCccCCCCCeeEe
Confidence 3456999999432110 234468888877764
No 257
>PF15179 Myc_target_1: Myc target protein 1
Probab=24.49 E-value=2.7e+02 Score=22.68 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027813 60 ICSLICSLGFHFLLKCV 76 (218)
Q Consensus 60 l~~li~~l~l~~i~r~~ 76 (218)
++.|++..++++++.|.
T Consensus 30 ~iGLviG~li~~Lltwl 46 (197)
T PF15179_consen 30 AIGLVIGALIWALLTWL 46 (197)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444445555565
No 258
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=24.42 E-value=31 Score=30.03 Aligned_cols=32 Identities=28% Similarity=0.605 Sum_probs=23.9
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHH
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDK 158 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~ 158 (218)
..|.||+......+.+---- |.-.||.-|+..
T Consensus 315 ~lC~IC~~P~~E~E~~FCD~-CDRG~HT~CVGL 346 (381)
T KOG1512|consen 315 ELCRICLGPVIESEHLFCDV-CDRGPHTLCVGL 346 (381)
T ss_pred HhhhccCCcccchheecccc-ccCCCCcccccc
Confidence 57999998877766553333 899999999764
No 259
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.17 E-value=40 Score=26.61 Aligned_cols=45 Identities=24% Similarity=0.468 Sum_probs=30.3
Q ss_pred ccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 129 VICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 129 aICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
.||+.--...+..-.-|.=.+.|+.+|-.+-+. .||.|..++--.
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~---~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTIT---SCPNCSTPIRGD 52 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHH---HCcCCCCCCCCc
Confidence 477766555555544554568899999776543 399998877644
No 260
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=24.16 E-value=67 Score=23.17 Aligned_cols=28 Identities=11% Similarity=-0.076 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027813 52 VVAVLSFLICSLICSLGFHFLLKCVFIRC 80 (218)
Q Consensus 52 viiil~ill~~li~~l~l~~i~r~~~~R~ 80 (218)
+|-.++....+++++++ +.++.|++.|+
T Consensus 41 yWpyLA~GGG~iLilIi-i~Lv~CC~~K~ 68 (98)
T PF07204_consen 41 YWPYLAAGGGLILILII-IALVCCCRAKH 68 (98)
T ss_pred hhHHhhccchhhhHHHH-HHHHHHhhhhh
Confidence 44555544433333333 33344443443
No 261
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=24.02 E-value=79 Score=22.47 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=31.1
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
...|.-|.....--| ..| |-.|+..+..|..|++.+...
T Consensus 33 rS~C~~C~~~L~~~~---lIP----------i~S~l~lrGrCr~C~~~I~~~ 71 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWD---LIP----------ILSYLLLRGRCRYCGAPIPPR 71 (92)
T ss_pred CCcCcCCCCcCcccc---cch----------HHHHHHhCCCCcccCCCCChH
Confidence 368999998877644 457 888999999999999887543
No 262
>PF02723 NS3_envE: Non-structural protein NS3/Small envelope protein E; InterPro: IPR003873 This is a family of small nonstructural proteins, well conserved among Coronavirus strains. This protein is also found in Murine hepatitis virus as small envelope protein E.; GO: 0016020 membrane
Probab=24.00 E-value=1.8e+02 Score=20.43 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=17.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 46 SCLHSNVVAVLSFLICSLICSLGFHFLLKCV 76 (218)
Q Consensus 46 ~~f~~~viiil~ill~~li~~l~l~~i~r~~ 76 (218)
+.+=.++++++.+.++++++..++...++.+
T Consensus 10 ~~lVvNiil~llvc~~~liv~~AlL~~IqLC 40 (82)
T PF02723_consen 10 HGLVVNIILWLLVCLVVLIVCIALLQLIQLC 40 (82)
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666665555543
No 263
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=23.94 E-value=55 Score=19.77 Aligned_cols=19 Identities=26% Similarity=0.754 Sum_probs=14.4
Q ss_pred HHHHhcCCCCccccccccc
Q 027813 157 DKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 157 ~~Wl~~~~~CP~CR~~l~~ 175 (218)
.-|-....+||.|..++.+
T Consensus 11 ~G~~ML~~~Cp~C~~PL~~ 29 (41)
T PF06677_consen 11 QGWTMLDEHCPDCGTPLMR 29 (41)
T ss_pred HhHhHhcCccCCCCCeeEE
Confidence 3455567789999888887
No 264
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.90 E-value=56 Score=31.81 Aligned_cols=46 Identities=26% Similarity=0.517 Sum_probs=32.6
Q ss_pred ccccccccccCCCceEEcCCCCc-ccChHHHHHHH--hc----CCCCcccccccccc
Q 027813 127 ECVICLSNFLPGERVRMLPICNH-GFHVRCIDKWL--RS----HSSCPKCRRCLIET 176 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H-~FH~~CI~~Wl--~~----~~~CP~CR~~l~~~ 176 (218)
.|+||-..+.- +.. ..|+| .-+..|..+.. .. ...||+||..+...
T Consensus 2 ~c~ic~~s~~~---~~~-~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~ 54 (669)
T KOG2231|consen 2 SCAICAFSPDF---VGR-GSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETK 54 (669)
T ss_pred CcceeecCccc---ccc-ccccccccchhhhhhhhhhcccccccccCcccccceeee
Confidence 59999876532 433 44999 89999988874 23 34589999877654
No 265
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=23.72 E-value=1.7e+02 Score=23.87 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=12.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHH
Q 027813 44 AKSCLHSNVVAVLSFLICSLIC 65 (218)
Q Consensus 44 ~~~~f~~~viiil~ill~~li~ 65 (218)
....||..-++--+||.+.++.
T Consensus 154 ~~s~FD~~SFiGGIVL~LGv~a 175 (186)
T PF05283_consen 154 KKSTFDAASFIGGIVLTLGVLA 175 (186)
T ss_pred CCCCCchhhhhhHHHHHHHHHH
Confidence 4567887665555555544443
No 266
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=23.39 E-value=1.2e+02 Score=21.91 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHHH
Q 027813 51 NVVAVLSFLICSL 63 (218)
Q Consensus 51 ~viiil~ill~~l 63 (218)
++++.++++++++
T Consensus 15 sl~~~~~~l~~~~ 27 (108)
T PF07219_consen 15 SLWVALILLLLLF 27 (108)
T ss_pred eHHHHHHHHHHHH
Confidence 3434433333333
No 267
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=23.37 E-value=1.5e+02 Score=22.47 Aligned_cols=7 Identities=43% Similarity=0.344 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 027813 54 AVLSFLI 60 (218)
Q Consensus 54 iil~ill 60 (218)
-++..|+
T Consensus 20 qv~~~L~ 26 (124)
T PRK11486 20 QVSGALI 26 (124)
T ss_pred HHHHHHH
Confidence 3333333
No 268
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.32 E-value=26 Score=30.62 Aligned_cols=47 Identities=26% Similarity=0.520 Sum_probs=36.2
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRC 172 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~ 172 (218)
+....|-||...+...+. ...|.|.|...|-..|......||.|+.-
T Consensus 103 ~~~~~~~~~~g~l~vpt~---~qg~w~qf~~~~p~~~~~~~~~~~d~~~~ 149 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTR---IQGCWHQFCYVCPKSNFAMGNDCPDCRGK 149 (324)
T ss_pred CCccceeeeeeeEEeccc---ccCceeeeeecCCchhhhhhhccchhhcC
Confidence 445689999887755332 23399999999999999988889888764
No 269
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=22.98 E-value=2.4e+02 Score=22.42 Aligned_cols=40 Identities=15% Similarity=-0.030 Sum_probs=17.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccc
Q 027813 45 KSCLHSNVVAVLSFLICSLICSLGFHFLLKCVF-IRCSRLLD 85 (218)
Q Consensus 45 ~~~f~~~viiil~ill~~li~~l~l~~i~r~~~-~R~~~~~~ 85 (218)
+.++-.-.+++++ .+.+++++.+++-.+|..+ .|..|++.
T Consensus 90 d~~~l~R~~~Vl~-g~s~l~i~yfvir~~R~r~~~rktRkYg 130 (163)
T PF06679_consen 90 DSPMLKRALYVLV-GLSALAILYFVIRTFRLRRRNRKTRKYG 130 (163)
T ss_pred CccchhhhHHHHH-HHHHHHHHHHHHHHHhhccccccceeec
Confidence 3444444443333 3333333444444454444 34444443
No 270
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=22.88 E-value=42 Score=26.25 Aligned_cols=26 Identities=31% Similarity=0.732 Sum_probs=17.8
Q ss_pred CCcccChHHHHHHHhc-----------CCCCccccccccccc
Q 027813 147 CNHGFHVRCIDKWLRS-----------HSSCPKCRRCLIETC 177 (218)
Q Consensus 147 C~H~FH~~CI~~Wl~~-----------~~~CP~CR~~l~~~~ 177 (218)
++|. ++.||.+ --+||+|-..-+.+.
T Consensus 10 ~gH~-----FEgWF~ss~~fd~Q~~~glv~CP~Cgs~~V~K~ 46 (148)
T PF06676_consen 10 NGHE-----FEGWFRSSAAFDRQQARGLVSCPVCGSTEVSKA 46 (148)
T ss_pred CCCc-----cceecCCHHHHHHHHHcCCccCCCCCCCeEeee
Confidence 3566 5789853 237999987777653
No 271
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=22.82 E-value=1.4e+02 Score=23.32 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=20.4
Q ss_pred HhcCCceeeccCCCCCCCCcccccccccccCCCceEE
Q 027813 107 LRNFPVVNYSTELKLPGLDTECVICLSNFLPGERVRM 143 (218)
Q Consensus 107 i~~lp~~~~~~~~~~~~~~~~CaICle~f~~~~~vr~ 143 (218)
+.++-.++|+.-.+. +++-.-+++|-+-.. +.+.+
T Consensus 80 ~~kvgvvRYnAF~dm-Gg~LSFslAlLD~~~-nGvVl 114 (151)
T PF14584_consen 80 VQKVGVVRYNAFEDM-GGDLSFSLALLDDNN-NGVVL 114 (151)
T ss_pred cceEEEEEccCcccc-cccceeeeEEEeCCC-CEEEE
Confidence 445667777764443 445678888776433 34433
No 272
>PHA03286 envelope glycoprotein E; Provisional
Probab=22.80 E-value=1.3e+02 Score=28.00 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 027813 64 ICSLGFHFLLKCVFIRCSR 82 (218)
Q Consensus 64 i~~l~l~~i~r~~~~R~~~ 82 (218)
++++.+.+++.+.++|+++
T Consensus 402 ~~~~~~~~~~~~~~~r~~~ 420 (492)
T PHA03286 402 LVVLLFALCIAGLYRRRRR 420 (492)
T ss_pred HHHHHHHHHhHhHhhhhhh
Confidence 3333344444455344333
No 273
>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG. This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....
Probab=22.65 E-value=1.3e+02 Score=17.98 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=14.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHH
Q 027813 44 AKSCLHSNVVAVLSFLICSLICS 66 (218)
Q Consensus 44 ~~~~f~~~viiil~ill~~li~~ 66 (218)
.+-.+++..++++++.+.+++++
T Consensus 14 ~giki~P~~Vl~~si~fi~~V~~ 36 (41)
T PF03911_consen 14 PGIKIDPKTVLIISIAFIAIVIL 36 (41)
T ss_dssp -SS-BSCCHHHHHHHHHHHHHHH
T ss_pred CcceeCCeehHHHHHHHHHHHHH
Confidence 44667888888777777666544
No 274
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=22.36 E-value=58 Score=25.85 Aligned_cols=11 Identities=9% Similarity=-0.007 Sum_probs=4.3
Q ss_pred hhHHHHHHHHH
Q 027813 50 SNVVAVLSFLI 60 (218)
Q Consensus 50 ~~viiil~ill 60 (218)
..+.+|++|++
T Consensus 80 iivgvi~~Vi~ 90 (179)
T PF13908_consen 80 IIVGVICGVIA 90 (179)
T ss_pred eeeehhhHHHH
Confidence 33434443333
No 275
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=22.05 E-value=99 Score=26.00 Aligned_cols=9 Identities=0% Similarity=0.209 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 027813 66 SLGFHFLLK 74 (218)
Q Consensus 66 ~l~l~~i~r 74 (218)
++++++++|
T Consensus 241 Fi~mvl~ir 249 (251)
T PF09753_consen 241 FIMMVLFIR 249 (251)
T ss_pred HHHHHHHhe
Confidence 334444443
No 276
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=21.84 E-value=52 Score=30.56 Aligned_cols=48 Identities=21% Similarity=0.555 Sum_probs=29.2
Q ss_pred CCcccccccccc-cCCCceEEcCCCCcccChHHHHHHHhc--------CCCCccccc
Q 027813 124 LDTECVICLSNF-LPGERVRMLPICNHGFHVRCIDKWLRS--------HSSCPKCRR 171 (218)
Q Consensus 124 ~~~~CaICle~f-~~~~~vr~lp~C~H~FH~~CI~~Wl~~--------~~~CP~CR~ 171 (218)
.+..|.+|..-- -....+..-..|+-.||..|-....+. .-.|-+|+.
T Consensus 167 ~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNR 223 (464)
T ss_pred ccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhcc
Confidence 345699999433 333333333447899999997665421 124888854
No 277
>PF07245 Phlebovirus_G2: Phlebovirus glycoprotein G2; InterPro: IPR009878 This domain is found in several Phlebovirus glycoprotein G2 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].
Probab=21.79 E-value=1.2e+02 Score=28.65 Aligned_cols=19 Identities=26% Similarity=0.502 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027813 56 LSFLICSLICSLGFHFLLK 74 (218)
Q Consensus 56 l~ill~~li~~l~l~~i~r 74 (218)
+.+|++++++++.++++.|
T Consensus 474 l~~l~i~~~~~~~~i~~~~ 492 (507)
T PF07245_consen 474 LGFLIIGILIFVLLIFICR 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 278
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=21.43 E-value=1.7e+02 Score=20.60 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=11.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHH
Q 027813 47 CLHSNVVAVLSFLICSLICSLGFHFL 72 (218)
Q Consensus 47 ~f~~~viiil~ill~~li~~l~l~~i 72 (218)
.|-...++++..+++++++++++.++
T Consensus 31 sfirdFvLVic~~lVfVii~lFi~ll 56 (84)
T PF06143_consen 31 SFIRDFVLVICCFLVFVIIVLFILLL 56 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444444444433333
No 279
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=21.42 E-value=43 Score=32.36 Aligned_cols=27 Identities=33% Similarity=1.064 Sum_probs=21.4
Q ss_pred CCcccChHHHHHHHhcC-----CCCccccccc
Q 027813 147 CNHGFHVRCIDKWLRSH-----SSCPKCRRCL 173 (218)
Q Consensus 147 C~H~FH~~CI~~Wl~~~-----~~CP~CR~~l 173 (218)
|+-.||..|+..|+... -.||-||...
T Consensus 41 c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe 72 (694)
T KOG4443|consen 41 CGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCE 72 (694)
T ss_pred hcccCCcchhhHHHhHHHhcCCcccCCceeee
Confidence 88999999999998542 3588887654
No 280
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.28 E-value=98 Score=22.40 Aligned_cols=35 Identities=17% Similarity=0.505 Sum_probs=28.3
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS 162 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~ 162 (218)
-.|.||-+.+..|+.....+ .--.|.+|+..=..+
T Consensus 7 wkC~VCg~~iieGqkFTF~~--kGsVH~eCl~~s~~~ 41 (103)
T COG4847 7 WKCYVCGGTIIEGQKFTFTK--KGSVHYECLAESKRK 41 (103)
T ss_pred eeEeeeCCEeeeccEEEEee--CCcchHHHHHHHHhc
Confidence 47999999999999887776 556799998875443
No 281
>PHA03164 hypothetical protein; Provisional
Probab=21.22 E-value=1.5e+02 Score=20.59 Aligned_cols=14 Identities=29% Similarity=0.199 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 027813 53 VAVLSFLICSLICS 66 (218)
Q Consensus 53 iiil~ill~~li~~ 66 (218)
++++..++++.|++
T Consensus 60 FlvLtgLaIamILf 73 (88)
T PHA03164 60 FLVLTGLAIAMILF 73 (88)
T ss_pred hHHHHHHHHHHHHH
Confidence 34444444444433
No 282
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=20.99 E-value=1.4e+02 Score=19.75 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027813 54 AVLSFLICSLICSLGFHFLLKC 75 (218)
Q Consensus 54 iil~ill~~li~~l~l~~i~r~ 75 (218)
++-.|+++++|++-.-++..+.
T Consensus 6 ilQli~lcALIf~pLgyl~~r~ 27 (62)
T TIGR03493 6 ILQLVLLCALIFFPLGYLARRS 27 (62)
T ss_pred HHHHHHHHHHHHHhHHHHHHhh
Confidence 3344445555443333444333
No 283
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=20.87 E-value=48 Score=31.02 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=11.0
Q ss_pred CcccccccccccCCC
Q 027813 125 DTECVICLSNFLPGE 139 (218)
Q Consensus 125 ~~~CaICle~f~~~~ 139 (218)
...|+-||+++...+
T Consensus 26 ~~yCp~CL~~~p~~e 40 (483)
T PF05502_consen 26 SYYCPNCLFEVPSSE 40 (483)
T ss_pred eeECccccccCChhh
Confidence 357999998886544
No 284
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=20.86 E-value=46 Score=21.89 Aligned_cols=12 Identities=42% Similarity=0.899 Sum_probs=9.4
Q ss_pred CCCCcccccccc
Q 027813 163 HSSCPKCRRCLI 174 (218)
Q Consensus 163 ~~~CP~CR~~l~ 174 (218)
+..||+|+..+.
T Consensus 2 k~~CPlCkt~~n 13 (61)
T PF05715_consen 2 KSLCPLCKTTLN 13 (61)
T ss_pred CccCCcccchhh
Confidence 457999988774
No 285
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.67 E-value=1.4e+02 Score=25.95 Aligned_cols=7 Identities=14% Similarity=0.188 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 027813 70 HFLLKCV 76 (218)
Q Consensus 70 ~~i~r~~ 76 (218)
++++|..
T Consensus 280 iWlyrrR 286 (295)
T TIGR01478 280 IWLYRRR 286 (295)
T ss_pred HHHHHhh
Confidence 3344433
No 286
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=20.53 E-value=3.5e+02 Score=20.88 Aligned_cols=28 Identities=21% Similarity=0.212 Sum_probs=14.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 49 HSNVVAVLSFLICSLICSLGFHFLLKCV 76 (218)
Q Consensus 49 ~~~viiil~ill~~li~~l~l~~i~r~~ 76 (218)
...+..+++-++.++.+++++.++++..
T Consensus 21 ~~~~~~~~gsL~~iL~lil~~~wl~kr~ 48 (137)
T COG3190 21 ALELAQMFGSLILILALILFLAWLVKRL 48 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555554443
No 287
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=20.44 E-value=1.9e+02 Score=20.94 Aligned_cols=23 Identities=4% Similarity=-0.011 Sum_probs=12.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHH
Q 027813 46 SCLHSNVVAVLSFLICSLICSLG 68 (218)
Q Consensus 46 ~~f~~~viiil~ill~~li~~l~ 68 (218)
.+++..++++++++++....+++
T Consensus 18 ~d~~~~Wl~~i~~~~v~~~t~~~ 40 (97)
T PF04834_consen 18 SDMPNYWLYAIGIVLVFCSTFFS 40 (97)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 45666666666664444433333
No 288
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=20.28 E-value=42 Score=25.70 Aligned_cols=6 Identities=50% Similarity=1.392 Sum_probs=4.3
Q ss_pred CCcccc
Q 027813 165 SCPKCR 170 (218)
Q Consensus 165 ~CP~CR 170 (218)
.||+|-
T Consensus 46 ~CPvC~ 51 (131)
T COG1645 46 FCPVCG 51 (131)
T ss_pred ECCCCC
Confidence 488884
No 289
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=20.26 E-value=1.7e+02 Score=24.54 Aligned_cols=23 Identities=4% Similarity=0.293 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027813 54 AVLSFLICSLICSLGFHFLLKCV 76 (218)
Q Consensus 54 iil~ill~~li~~l~l~~i~r~~ 76 (218)
+.+.+++++++.++.++++++..
T Consensus 218 f~~~miI~v~~sFVsMiliiqif 240 (244)
T KOG2678|consen 218 FYITMIIFVILSFVSMILIIQIF 240 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333444444455555543
No 290
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=20.19 E-value=1.9e+02 Score=16.45 Aligned_cols=16 Identities=19% Similarity=0.278 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 027813 52 VVAVLSFLICSLICSL 67 (218)
Q Consensus 52 viiil~ill~~li~~l 67 (218)
.+-++++++++++...
T Consensus 5 ~l~fiAtaLfi~iPt~ 20 (31)
T PF05151_consen 5 ILAFIATALFILIPTA 20 (31)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4445555555544433
No 291
>PTZ00370 STEVOR; Provisional
Probab=20.14 E-value=1.4e+02 Score=26.03 Aligned_cols=7 Identities=14% Similarity=0.188 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 027813 70 HFLLKCV 76 (218)
Q Consensus 70 ~~i~r~~ 76 (218)
++++|..
T Consensus 276 iwlyrrR 282 (296)
T PTZ00370 276 IWLYRRR 282 (296)
T ss_pred HHHHHhh
Confidence 3334433
Done!