Query 027813
Match_columns 218
No_of_seqs 192 out of 1734
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 02:48:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 5.9E-20 2E-24 131.6 8.1 80 95-175 10-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 1.1E-18 3.8E-23 120.2 3.6 69 106-176 5-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.7 4E-17 1.4E-21 105.5 4.0 52 123-174 3-54 (55)
4 2ep4_A Ring finger protein 24; 99.6 2.1E-16 7E-21 108.3 5.9 53 123-176 13-65 (74)
5 2kiz_A E3 ubiquitin-protein li 99.6 2.5E-16 8.6E-21 106.5 5.4 54 122-176 11-64 (69)
6 2ecl_A Ring-box protein 2; RNF 99.6 2.5E-16 8.4E-21 110.3 4.3 53 124-176 14-77 (81)
7 2ect_A Ring finger protein 126 99.6 5.9E-16 2E-20 107.1 5.6 53 123-176 13-65 (78)
8 2ecm_A Ring finger and CHY zin 99.6 2.1E-15 7.3E-20 97.2 4.7 50 124-174 4-54 (55)
9 1v87_A Deltex protein 2; ring- 99.5 1E-14 3.4E-19 108.0 6.7 52 124-176 24-95 (114)
10 2d8s_A Cellular modulator of i 99.5 4.6E-15 1.6E-19 103.6 4.4 55 120-176 10-71 (80)
11 3dpl_R Ring-box protein 1; ubi 99.5 6.6E-15 2.3E-19 108.2 4.6 51 123-174 35-100 (106)
12 2ea6_A Ring finger protein 4; 99.5 1E-14 3.5E-19 98.1 4.4 52 123-175 13-68 (69)
13 3ng2_A RNF4, snurf, ring finge 99.5 7.4E-15 2.5E-19 99.5 3.1 53 123-176 8-64 (71)
14 2xeu_A Ring finger protein 4; 99.5 1E-14 3.6E-19 96.6 2.7 52 124-176 2-57 (64)
15 1chc_A Equine herpes virus-1 r 99.5 6.2E-14 2.1E-18 94.2 5.9 51 123-176 3-53 (68)
16 2ecn_A Ring finger protein 141 99.4 2.8E-14 9.4E-19 96.6 2.9 49 123-176 13-61 (70)
17 2d8t_A Dactylidin, ring finger 99.4 5.7E-14 2E-18 95.4 3.8 50 123-176 13-62 (71)
18 4a0k_B E3 ubiquitin-protein li 99.4 1.5E-14 5.1E-19 107.9 0.5 51 123-174 46-111 (117)
19 2djb_A Polycomb group ring fin 99.4 2E-13 6.9E-18 92.9 4.9 51 123-176 13-63 (72)
20 2ct2_A Tripartite motif protei 99.4 2.8E-13 9.5E-18 95.3 5.6 53 123-176 13-69 (88)
21 2csy_A Zinc finger protein 183 99.4 5.8E-13 2E-17 92.6 5.4 48 123-174 13-60 (81)
22 2ct0_A Non-SMC element 1 homol 99.4 5.6E-13 1.9E-17 91.4 4.5 51 122-175 12-64 (74)
23 2yur_A Retinoblastoma-binding 99.3 8.3E-13 2.8E-17 90.4 5.3 51 123-176 13-65 (74)
24 2ysl_A Tripartite motif-contai 99.3 1E-12 3.5E-17 89.3 5.0 50 123-176 18-70 (73)
25 4ayc_A E3 ubiquitin-protein li 99.3 7.3E-13 2.5E-17 101.4 3.7 48 125-176 53-100 (138)
26 2ecy_A TNF receptor-associated 99.3 1.2E-12 4.2E-17 87.4 4.2 50 123-176 13-63 (66)
27 4ap4_A E3 ubiquitin ligase RNF 99.3 1.2E-12 4.2E-17 98.5 2.8 53 123-176 5-61 (133)
28 3lrq_A E3 ubiquitin-protein li 99.3 2.9E-12 1E-16 92.8 4.3 48 125-176 22-71 (100)
29 2ysj_A Tripartite motif-contai 99.3 6.5E-12 2.2E-16 83.0 5.5 43 123-169 18-63 (63)
30 1t1h_A Gspef-atpub14, armadill 99.3 5E-12 1.7E-16 87.1 5.0 49 123-175 6-55 (78)
31 4ap4_A E3 ubiquitin ligase RNF 99.3 2.7E-12 9.3E-17 96.5 3.7 53 123-176 70-126 (133)
32 2ecw_A Tripartite motif-contai 99.2 6.8E-12 2.3E-16 87.3 5.3 49 123-175 17-71 (85)
33 2ecv_A Tripartite motif-contai 99.2 6.3E-12 2.1E-16 87.5 4.5 49 123-175 17-71 (85)
34 2y43_A E3 ubiquitin-protein li 99.2 6.4E-12 2.2E-16 90.6 4.5 47 125-175 22-69 (99)
35 2egp_A Tripartite motif-contai 99.2 2E-12 6.7E-17 89.2 1.5 49 123-175 10-65 (79)
36 2ecj_A Tripartite motif-contai 99.2 8E-12 2.7E-16 80.9 3.9 43 123-169 13-58 (58)
37 1g25_A CDK-activating kinase a 99.2 6.7E-12 2.3E-16 83.5 3.5 51 125-176 3-56 (65)
38 2ckl_A Polycomb group ring fin 99.2 8.3E-12 2.8E-16 91.4 3.8 50 124-176 14-63 (108)
39 3fl2_A E3 ubiquitin-protein li 99.2 1.6E-11 5.6E-16 92.0 4.3 47 125-175 52-99 (124)
40 2ckl_B Ubiquitin ligase protei 99.2 2.1E-11 7.2E-16 95.8 4.7 48 125-175 54-102 (165)
41 3ztg_A E3 ubiquitin-protein li 99.1 3.9E-11 1.3E-15 85.2 4.9 49 123-174 11-61 (92)
42 1jm7_A BRCA1, breast cancer ty 99.1 2.8E-11 9.7E-16 88.7 3.4 48 125-176 21-71 (112)
43 2vje_A E3 ubiquitin-protein li 99.1 6E-11 2E-15 79.0 3.6 48 124-175 7-57 (64)
44 1z6u_A NP95-like ring finger p 99.1 7.2E-11 2.5E-15 91.7 4.4 48 125-176 78-126 (150)
45 3hct_A TNF receptor-associated 99.1 5.7E-11 2E-15 88.4 3.6 50 123-176 16-66 (118)
46 1rmd_A RAG1; V(D)J recombinati 99.1 8.9E-11 3.1E-15 86.9 4.4 48 125-176 23-71 (116)
47 3l11_A E3 ubiquitin-protein li 99.0 3E-11 1E-15 89.3 1.1 48 124-175 14-62 (115)
48 1e4u_A Transcriptional repress 99.0 3E-10 1E-14 78.6 5.8 53 123-176 9-63 (78)
49 2vje_B MDM4 protein; proto-onc 99.0 1.3E-10 4.6E-15 77.0 3.4 51 123-175 5-56 (63)
50 2y1n_A E3 ubiquitin-protein li 99.0 1.8E-10 6.1E-15 101.8 5.2 49 124-176 331-380 (389)
51 3k1l_B Fancl; UBC, ring, RWD, 99.0 2E-10 6.9E-15 99.3 3.3 57 122-178 305-376 (381)
52 1bor_A Transcription factor PM 99.0 1.1E-10 3.8E-15 75.5 1.1 47 123-176 4-50 (56)
53 3knv_A TNF receptor-associated 98.9 3.2E-10 1.1E-14 87.1 3.2 48 123-174 29-77 (141)
54 2kr4_A Ubiquitin conjugation f 98.9 1.1E-09 3.6E-14 77.0 5.5 49 124-176 13-61 (85)
55 1vyx_A ORF K3, K3RING; zinc-bi 98.9 8.5E-10 2.9E-14 72.5 3.7 48 123-174 4-58 (60)
56 2kre_A Ubiquitin conjugation f 98.9 9.3E-10 3.2E-14 79.7 4.0 48 124-175 28-75 (100)
57 4ic3_A E3 ubiquitin-protein li 98.9 4.6E-10 1.6E-14 76.7 1.9 44 125-176 24-68 (74)
58 1wgm_A Ubiquitin conjugation f 98.9 1.4E-09 4.9E-14 78.4 4.2 48 124-175 21-69 (98)
59 1jm7_B BARD1, BRCA1-associated 98.9 4.1E-10 1.4E-14 83.6 1.0 44 125-174 22-66 (117)
60 2ea5_A Cell growth regulator w 98.8 8.3E-09 2.8E-13 69.4 5.1 47 122-176 12-59 (68)
61 3hcs_A TNF receptor-associated 98.7 4.3E-09 1.5E-13 82.8 3.6 50 123-176 16-66 (170)
62 1wim_A KIAA0161 protein; ring 98.7 6.7E-09 2.3E-13 73.9 3.2 52 124-176 4-67 (94)
63 2ecg_A Baculoviral IAP repeat- 98.7 6.7E-09 2.3E-13 70.9 2.4 43 125-175 25-68 (75)
64 2yu4_A E3 SUMO-protein ligase 98.7 1.3E-08 4.6E-13 72.5 4.1 46 124-172 6-59 (94)
65 2c2l_A CHIP, carboxy terminus 98.7 1.5E-08 5.1E-13 85.0 4.5 49 123-175 206-255 (281)
66 2yho_A E3 ubiquitin-protein li 98.6 1.7E-08 5.7E-13 69.9 2.4 44 125-176 18-62 (79)
67 2f42_A STIP1 homology and U-bo 98.5 7.2E-08 2.4E-12 76.7 4.3 49 123-175 104-153 (179)
68 2bay_A PRE-mRNA splicing facto 98.4 1.2E-07 4.2E-12 62.2 3.3 47 126-176 4-51 (61)
69 3t6p_A Baculoviral IAP repeat- 98.4 6.8E-08 2.3E-12 84.4 1.7 45 124-176 294-339 (345)
70 3htk_C E3 SUMO-protein ligase 98.3 4E-07 1.4E-11 76.2 3.9 49 124-175 180-232 (267)
71 3vk6_A E3 ubiquitin-protein li 98.1 1.5E-06 5.2E-11 62.0 3.5 50 127-179 3-53 (101)
72 3nw0_A Non-structural maintena 97.9 4.4E-06 1.5E-10 69.3 3.4 49 123-174 178-228 (238)
73 2ko5_A Ring finger protein Z; 96.3 0.0032 1.1E-07 44.2 3.6 47 124-176 27-74 (99)
74 2lri_C Autoimmune regulator; Z 96.3 0.0033 1.1E-07 41.5 3.4 48 122-173 9-60 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 94.8 0.024 8.3E-07 39.9 3.7 34 125-159 3-36 (101)
76 1we9_A PHD finger family prote 93.3 0.02 6.7E-07 37.2 0.6 49 123-171 4-57 (64)
77 1wil_A KIAA1045 protein; ring 93.2 0.071 2.4E-06 36.6 3.3 35 123-159 13-47 (89)
78 2knc_A Integrin alpha-IIB; tra 93.0 0.33 1.1E-05 30.4 5.8 35 49-83 10-44 (54)
79 2l5u_A Chromodomain-helicase-D 92.1 0.1 3.5E-06 33.5 2.8 45 123-171 9-57 (61)
80 2l8s_A Integrin alpha-1; trans 92.1 0.55 1.9E-05 29.4 6.0 34 50-83 8-41 (54)
81 2puy_A PHD finger protein 21A; 91.8 0.022 7.4E-07 36.6 -0.7 50 123-176 3-56 (60)
82 3lqh_A Histone-lysine N-methyl 91.6 0.075 2.6E-06 42.0 2.1 49 126-174 3-65 (183)
83 3o36_A Transcription intermedi 91.5 0.11 3.7E-06 40.8 2.9 47 124-174 3-53 (184)
84 3u5n_A E3 ubiquitin-protein li 91.0 0.055 1.9E-06 43.4 0.7 48 122-173 4-55 (207)
85 1mm2_A MI2-beta; PHD, zinc fin 90.2 0.057 2E-06 34.7 0.1 48 122-173 6-57 (61)
86 2k16_A Transcription initiatio 90.2 0.073 2.5E-06 35.5 0.6 51 123-174 16-70 (75)
87 1f62_A Transcription factor WS 89.4 0.16 5.6E-06 31.1 1.8 44 127-171 2-49 (51)
88 2yql_A PHD finger protein 21A; 88.8 0.065 2.2E-06 33.8 -0.5 46 122-171 6-55 (56)
89 2ysm_A Myeloid/lymphoid or mix 87.7 0.18 6E-06 36.2 1.2 48 122-170 4-55 (111)
90 2vpb_A Hpygo1, pygopus homolog 87.5 0.45 1.5E-05 30.9 3.0 36 123-158 6-42 (65)
91 1wep_A PHF8; structural genomi 87.2 0.55 1.9E-05 31.5 3.5 49 124-173 11-64 (79)
92 1xwh_A Autoimmune regulator; P 86.9 0.11 3.7E-06 33.9 -0.3 46 122-171 5-54 (66)
93 1fp0_A KAP-1 corepressor; PHD 86.8 0.36 1.2E-05 33.5 2.3 47 122-172 22-72 (88)
94 2kgg_A Histone demethylase jar 86.2 0.27 9.1E-06 30.4 1.3 44 127-170 4-52 (52)
95 2k1a_A Integrin alpha-IIB; sin 85.8 0.92 3.2E-05 26.9 3.4 32 50-81 9-40 (42)
96 3v43_A Histone acetyltransfera 85.6 0.23 7.9E-06 35.8 0.9 46 126-171 62-111 (112)
97 1wem_A Death associated transc 84.9 0.37 1.3E-05 32.1 1.7 48 124-173 15-71 (76)
98 2e6r_A Jumonji/ARID domain-con 84.8 0.14 4.7E-06 35.8 -0.6 51 123-174 14-68 (92)
99 1wee_A PHD finger family prote 83.6 0.21 7.1E-06 33.0 -0.1 48 124-172 15-66 (72)
100 2ri7_A Nucleosome-remodeling f 83.0 0.31 1.1E-05 37.6 0.7 49 123-172 6-59 (174)
101 2lv9_A Histone-lysine N-methyl 81.3 0.62 2.1E-05 32.7 1.7 45 126-172 29-76 (98)
102 2yt5_A Metal-response element- 80.5 0.87 3E-05 29.2 2.1 50 123-172 4-61 (66)
103 2lbm_A Transcriptional regulat 80.1 1.7 5.8E-05 32.7 3.8 47 122-172 60-117 (142)
104 1wev_A Riken cDNA 1110020M19; 79.8 0.38 1.3E-05 33.2 0.1 51 124-174 15-74 (88)
105 3v43_A Histone acetyltransfera 79.0 2.9 0.0001 29.8 4.7 34 125-158 5-43 (112)
106 2ro1_A Transcription intermedi 78.1 0.42 1.4E-05 37.7 -0.1 44 125-172 2-49 (189)
107 4gne_A Histone-lysine N-methyl 77.9 1.7 5.8E-05 31.1 3.1 47 122-174 12-64 (107)
108 2xb1_A Pygopus homolog 2, B-ce 76.4 1.6 5.5E-05 31.0 2.6 48 126-173 4-62 (105)
109 1wew_A DNA-binding family prot 75.9 0.95 3.2E-05 30.3 1.2 49 124-174 15-74 (78)
110 1g47_A Pinch protein; LIM doma 75.7 3.3 0.00011 26.8 3.9 43 124-176 10-52 (77)
111 3ql9_A Transcriptional regulat 75.0 3.8 0.00013 30.2 4.4 49 122-174 54-113 (129)
112 1z2q_A LM5-1; membrane protein 73.6 3.7 0.00013 27.7 3.8 37 123-159 19-55 (84)
113 2l43_A N-teminal domain from h 73.3 1.6 5.5E-05 29.9 1.9 51 123-173 23-76 (88)
114 3shb_A E3 ubiquitin-protein li 72.9 0.42 1.4E-05 32.2 -1.2 44 127-171 28-76 (77)
115 1wen_A Inhibitor of growth fam 72.7 2.4 8.1E-05 27.9 2.5 45 123-172 14-65 (71)
116 2ku3_A Bromodomain-containing 72.6 4.1 0.00014 26.7 3.7 50 122-171 13-65 (71)
117 3o70_A PHD finger protein 13; 72.3 0.83 2.9E-05 29.8 0.2 47 123-171 17-66 (68)
118 2kwj_A Zinc finger protein DPF 71.3 3.4 0.00012 29.5 3.4 34 126-159 2-41 (114)
119 2e6s_A E3 ubiquitin-protein li 70.7 0.76 2.6E-05 30.9 -0.3 45 126-171 27-76 (77)
120 2cu8_A Cysteine-rich protein 2 70.1 5.2 0.00018 25.8 3.8 41 124-175 8-48 (76)
121 2dj7_A Actin-binding LIM prote 69.2 6.2 0.00021 26.0 4.1 40 124-174 14-53 (80)
122 3m62_A Ubiquitin conjugation f 67.8 4.7 0.00016 39.3 4.4 50 123-176 889-939 (968)
123 1x4k_A Skeletal muscle LIM-pro 67.6 3.7 0.00013 26.1 2.7 41 126-176 6-46 (72)
124 3c6w_A P28ING5, inhibitor of g 67.6 1.6 5.4E-05 27.6 0.7 43 124-171 8-57 (59)
125 1weu_A Inhibitor of growth fam 67.6 2.8 9.5E-05 29.0 2.1 45 123-172 34-85 (91)
126 2yw8_A RUN and FYVE domain-con 66.3 4.3 0.00015 27.2 2.8 37 123-159 17-53 (82)
127 3asl_A E3 ubiquitin-protein li 65.7 0.94 3.2E-05 29.7 -0.6 44 127-171 20-68 (70)
128 1wyh_A SLIM 2, skeletal muscle 65.5 4.2 0.00014 25.9 2.6 41 125-175 5-45 (72)
129 3t7l_A Zinc finger FYVE domain 64.8 5.2 0.00018 27.4 3.0 50 125-174 20-75 (90)
130 1wfk_A Zinc finger, FYVE domai 64.7 6 0.0002 27.0 3.3 53 123-175 7-66 (88)
131 2rsd_A E3 SUMO-protein ligase 64.5 0.73 2.5E-05 30.0 -1.4 46 125-171 10-64 (68)
132 1vfy_A Phosphatidylinositol-3- 64.5 4.9 0.00017 26.3 2.8 33 126-158 12-44 (73)
133 2ysm_A Myeloid/lymphoid or mix 64.3 1 3.5E-05 32.0 -0.7 45 127-172 56-104 (111)
134 3f6q_B LIM and senescent cell 64.1 6.4 0.00022 24.8 3.3 42 125-176 11-52 (72)
135 2co8_A NEDD9 interacting prote 63.9 6.5 0.00022 26.0 3.4 42 124-176 14-55 (82)
136 1y02_A CARP2, FYVE-ring finger 63.7 1.1 3.7E-05 32.8 -0.7 48 125-172 19-66 (120)
137 1x61_A Thyroid receptor intera 63.4 6.8 0.00023 24.9 3.3 40 125-174 5-44 (72)
138 2kwj_A Zinc finger protein DPF 63.3 0.71 2.4E-05 33.3 -1.8 47 127-174 60-110 (114)
139 1joc_A EEA1, early endosomal a 63.1 4.1 0.00014 29.7 2.4 35 124-158 68-102 (125)
140 3ask_A E3 ubiquitin-protein li 63.0 1.8 6E-05 35.2 0.4 45 126-171 175-224 (226)
141 1x4l_A Skeletal muscle LIM-pro 63.0 7.2 0.00025 24.8 3.4 40 125-174 5-46 (72)
142 1x63_A Skeletal muscle LIM-pro 62.8 5.9 0.0002 25.9 3.0 42 125-176 15-56 (82)
143 1iml_A CRIP, cysteine rich int 62.7 3.5 0.00012 26.7 1.8 26 127-155 2-27 (76)
144 2vnf_A ING 4, P29ING4, inhibit 62.6 2.1 7.2E-05 27.1 0.6 43 124-171 9-58 (60)
145 1x64_A Alpha-actinin-2 associa 62.3 6.5 0.00022 26.3 3.2 40 124-175 24-63 (89)
146 1x4u_A Zinc finger, FYVE domai 62.0 5.7 0.0002 26.7 2.8 36 123-158 12-47 (84)
147 2l2t_A Receptor tyrosine-prote 60.1 22 0.00076 21.0 4.8 24 52-75 13-36 (44)
148 1z60_A TFIIH basal transcripti 59.9 3.6 0.00012 26.1 1.4 42 126-169 16-58 (59)
149 1dvp_A HRS, hepatocyte growth 58.9 5 0.00017 32.0 2.4 35 125-159 161-195 (220)
150 1zza_A Stannin, AG8_1; helix, 58.4 24 0.00083 23.3 5.2 7 77-83 37-43 (90)
151 1x68_A FHL5 protein; four-and- 57.6 8.6 0.00029 24.8 3.0 40 125-174 5-46 (76)
152 1a7i_A QCRP2 (LIM1); LIM domai 57.5 4 0.00014 26.8 1.4 41 125-176 7-47 (81)
153 1zbd_B Rabphilin-3A; G protein 56.2 7 0.00024 28.9 2.6 49 123-171 53-106 (134)
154 3zyq_A Hepatocyte growth facto 56.0 5.8 0.0002 31.8 2.3 35 125-159 164-198 (226)
155 1zfo_A LAsp-1; LIM domain, zin 55.8 2.6 8.9E-05 22.9 0.1 28 126-156 4-31 (31)
156 3kqi_A GRC5, PHD finger protei 55.6 2.8 9.7E-05 27.6 0.3 46 126-172 11-61 (75)
157 2l3k_A Rhombotin-2, linker, LI 55.4 5.9 0.0002 28.3 2.1 29 127-157 10-38 (123)
158 3i2d_A E3 SUMO-protein ligase 54.6 13 0.00043 32.4 4.3 46 126-174 250-299 (371)
159 3o7a_A PHD finger protein 13 v 54.4 2.1 7.2E-05 26.1 -0.5 42 130-172 8-52 (52)
160 2d8x_A Protein pinch; LIM doma 54.2 13 0.00045 23.3 3.5 40 125-176 5-44 (70)
161 2d8v_A Zinc finger FYVE domain 54.1 14 0.00048 23.9 3.4 32 123-159 6-38 (67)
162 2d8y_A Eplin protein; LIM doma 53.9 8.8 0.0003 25.7 2.7 40 125-175 15-54 (91)
163 2cor_A Pinch protein; LIM doma 53.9 11 0.00039 24.5 3.2 41 124-176 14-54 (79)
164 4fo9_A E3 SUMO-protein ligase 52.2 15 0.0005 31.8 4.3 46 126-174 216-265 (360)
165 2g6q_A Inhibitor of growth pro 52.1 4.4 0.00015 25.8 0.8 43 124-171 10-59 (62)
166 3mpx_A FYVE, rhogef and PH dom 50.7 3.3 0.00011 36.1 0.0 50 124-173 374-430 (434)
167 1weo_A Cellulose synthase, cat 49.4 29 0.00098 23.9 4.6 51 124-174 15-69 (93)
168 2gmg_A Hypothetical protein PF 49.2 3 0.0001 29.7 -0.4 25 147-176 73-97 (105)
169 2dar_A PDZ and LIM domain prot 48.8 17 0.00057 24.2 3.5 40 124-175 24-63 (90)
170 2l4z_A DNA endonuclease RBBP8, 47.4 12 0.00041 26.9 2.7 40 125-175 61-100 (123)
171 3a1b_A DNA (cytosine-5)-methyl 46.0 18 0.0006 27.6 3.4 35 122-160 76-112 (159)
172 2cs3_A Protein C14ORF4, MY039 45.8 37 0.0013 22.9 4.6 40 123-162 13-52 (93)
173 3kv5_D JMJC domain-containing 45.6 5.3 0.00018 36.0 0.6 48 125-173 37-89 (488)
174 1x62_A C-terminal LIM domain p 44.6 15 0.00051 23.8 2.6 39 125-175 15-53 (79)
175 2rgt_A Fusion of LIM/homeobox 44.4 12 0.00042 28.1 2.4 39 126-174 66-104 (169)
176 1v6g_A Actin binding LIM prote 44.2 19 0.00066 23.3 3.1 38 126-175 16-53 (81)
177 2egq_A FHL1 protein; LIM domai 43.9 17 0.00058 23.2 2.8 41 125-175 15-58 (77)
178 2ku7_A MLL1 PHD3-CYP33 RRM chi 43.1 8.8 0.0003 27.3 1.4 29 146-174 7-46 (140)
179 2knc_B Integrin beta-3; transm 43.1 35 0.0012 22.7 4.2 18 56-73 15-32 (79)
180 2cur_A Skeletal muscle LIM-pro 41.7 26 0.00087 21.8 3.3 38 125-174 5-42 (69)
181 1nyp_A Pinch protein; LIM doma 41.4 10 0.00036 23.5 1.3 39 125-175 5-43 (66)
182 2ehe_A Four and A half LIM dom 41.1 16 0.00054 23.7 2.3 41 125-175 15-55 (82)
183 1rut_X Flinc4, fusion protein 40.9 17 0.00059 27.8 2.8 28 127-156 71-98 (188)
184 2cup_A Skeletal muscle LIM-pro 40.7 23 0.00077 23.9 3.2 10 127-136 7-16 (101)
185 1wig_A KIAA1808 protein; LIM d 39.1 17 0.00058 23.2 2.1 37 126-174 6-42 (73)
186 2pk7_A Uncharacterized protein 38.5 6.5 0.00022 25.7 -0.0 21 156-176 1-21 (69)
187 2xjy_A Rhombotin-2; oncoprotei 37.6 20 0.00068 25.5 2.5 38 127-174 68-105 (131)
188 2d8z_A Four and A half LIM dom 37.6 21 0.00072 22.3 2.4 38 125-174 5-42 (70)
189 2iyb_E Testin, TESS, TES; LIM 37.3 18 0.00063 22.4 2.1 39 126-174 3-43 (65)
190 2zet_C Melanophilin; complex, 37.1 21 0.00073 26.9 2.7 47 123-171 66-116 (153)
191 2pv0_B DNA (cytosine-5)-methyl 36.9 25 0.00085 30.7 3.4 47 122-172 90-148 (386)
192 1x6a_A LIMK-2, LIM domain kina 36.6 18 0.00062 23.4 2.0 38 126-175 16-53 (81)
193 2jvx_A NF-kappa-B essential mo 36.5 7.4 0.00025 20.8 -0.0 12 164-175 4-15 (28)
194 2o35_A Hypothetical protein DU 36.2 15 0.0005 25.8 1.5 13 150-162 42-54 (105)
195 3fyb_A Protein of unknown func 35.8 15 0.00052 25.7 1.5 12 150-161 41-52 (104)
196 2k9j_B Integrin beta-3; transm 35.7 60 0.0021 18.9 4.0 21 55-75 13-33 (43)
197 2dlo_A Thyroid receptor-intera 34.7 30 0.001 22.3 2.9 38 125-174 15-52 (81)
198 2jtn_A LIM domain-binding prot 33.4 17 0.00058 27.7 1.6 11 126-136 88-98 (182)
199 2jny_A Uncharacterized BCR; st 33.1 6.8 0.00023 25.5 -0.6 21 156-176 3-23 (67)
200 2jmi_A Protein YNG1, ING1 homo 33.1 11 0.00039 25.8 0.5 46 123-171 24-75 (90)
201 1j2o_A FLIN2, fusion of rhombo 32.4 28 0.00094 24.3 2.5 11 148-158 52-62 (114)
202 2zxe_G FXYD10, phospholemman-l 32.2 55 0.0019 21.5 3.7 30 44-73 10-39 (74)
203 1b8t_A Protein (CRP1); LIM dom 32.0 28 0.00095 26.7 2.7 39 125-174 115-153 (192)
204 1x3h_A Leupaxin; paxillin fami 30.4 39 0.0013 21.5 2.9 38 126-175 16-53 (80)
205 3mjh_B Early endosome antigen 30.3 14 0.00046 20.7 0.4 12 165-176 7-18 (34)
206 2cuq_A Four and A half LIM dom 30.2 31 0.0011 22.1 2.3 38 125-174 15-52 (80)
207 1b8t_A Protein (CRP1); LIM dom 30.0 33 0.0011 26.3 2.8 28 126-156 8-35 (192)
208 2jo1_A Phospholemman; FXYD1, N 29.3 1.2E+02 0.0041 19.7 5.5 26 48-73 11-36 (72)
209 2jp3_A FXYD domain-containing 28.7 83 0.0028 20.2 4.0 26 48-73 12-37 (67)
210 3kv4_A PHD finger protein 8; e 28.2 15 0.00051 32.7 0.5 48 127-174 6-58 (447)
211 2kpi_A Uncharacterized protein 27.7 5.5 0.00019 24.9 -1.7 21 157-177 4-24 (56)
212 2wwb_C SEC61BETA, protein tran 27.2 52 0.0018 22.8 3.1 23 44-66 64-86 (96)
213 2jyp_A Aragonite protein AP7; 26.6 22 0.00074 19.3 0.8 18 125-142 9-26 (36)
214 2xqn_T Testin, TESS; metal-bin 25.0 45 0.0015 23.4 2.6 39 126-174 64-104 (126)
215 2lcq_A Putative toxin VAPC6; P 24.9 18 0.00063 27.1 0.5 22 147-174 138-159 (165)
216 2jr6_A UPF0434 protein NMA0874 24.7 6.9 0.00024 25.5 -1.7 19 158-176 3-21 (68)
217 1wd2_A Ariadne-1 protein homol 24.0 15 0.0005 23.1 -0.2 37 125-161 6-46 (60)
218 2hf1_A Tetraacyldisaccharide-1 23.0 6.9 0.00024 25.5 -2.0 19 158-176 3-21 (68)
219 2js4_A UPF0434 protein BB2007; 22.4 7.4 0.00025 25.5 -2.0 19 158-176 3-21 (70)
220 1rh5_C Secbeta; protein transl 21.4 1.3E+02 0.0043 18.4 3.7 24 44-67 24-47 (53)
221 2jmo_A Parkin; IBR, E3 ligase, 20.9 7.3 0.00025 25.9 -2.3 14 146-159 55-68 (80)
222 2das_A Zinc finger MYM-type pr 20.0 1.2E+02 0.0042 19.0 3.5 35 125-159 20-55 (62)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.81 E-value=5.9e-20 Score=131.57 Aligned_cols=80 Identities=26% Similarity=0.622 Sum_probs=71.4
Q ss_pred ccCCCCCccHHHHhcCCceeeccCCCCCCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 95 TSGKSSGIKKKALRNFPVVNYSTELKLPGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 95 ~~~~~~~~~~~~i~~lp~~~~~~~~~~~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
......+++++.++.+|.+.+.......+.+..|+||+++|..++.++.++ |+|.||..||+.|++.+.+||+||..+.
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 456678899999999999999876655567789999999999999999999 9999999999999999999999999876
Q ss_pred c
Q 027813 175 E 175 (218)
Q Consensus 175 ~ 175 (218)
.
T Consensus 89 ~ 89 (91)
T 2l0b_A 89 P 89 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-18 Score=120.24 Aligned_cols=69 Identities=33% Similarity=0.838 Sum_probs=59.4
Q ss_pred HHhcCCceeeccCCCCCCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 106 ALRNFPVVNYSTELKLPGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 106 ~i~~lp~~~~~~~~~~~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
.++.+|..+++.... ...+.+|+||+++|..++.++.++ |+|.||..||+.|++.+.+||+||+.+.+.
T Consensus 5 ~i~~lp~~~~~~~~~-~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNH-QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSSC-SSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCccc-cCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 367788888875432 345679999999999999999999 999999999999999999999999988765
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.66 E-value=4e-17 Score=105.53 Aligned_cols=52 Identities=48% Similarity=1.134 Sum_probs=47.1
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
+++.+|+||+++|..++.+..++.|+|.||..||..|++++.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3457999999999999988888779999999999999999999999998864
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=108.34 Aligned_cols=53 Identities=34% Similarity=0.949 Sum_probs=48.5
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
..+.+|+||+++|...+.+++++ |+|.||..||..|++.+.+||+||..+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 45679999999999988899999 999999999999999999999999998754
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=2.5e-16 Score=106.45 Aligned_cols=54 Identities=43% Similarity=0.907 Sum_probs=48.6
Q ss_pred CCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
...+..|+||++.|..++.++.++ |+|.||..||..|++.+.+||+||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 345678999999999888899999 999999999999999999999999988754
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.5e-16 Score=110.27 Aligned_cols=53 Identities=26% Similarity=0.696 Sum_probs=43.4
Q ss_pred CCcccccccccccC-----------CCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 124 LDTECVICLSNFLP-----------GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 124 ~~~~CaICle~f~~-----------~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
.++.|+||+++|.. ++.+++++.|+|.||.+||++||+.+.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 45678888888854 455666666999999999999999999999999988654
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=5.9e-16 Score=107.11 Aligned_cols=53 Identities=49% Similarity=1.050 Sum_probs=48.5
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
..+.+|+||++.|...+.+++++ |+|.||..||..|++.+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 45679999999999988888999 999999999999999999999999998764
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.56 E-value=2.1e-15 Score=97.21 Aligned_cols=50 Identities=28% Similarity=0.647 Sum_probs=43.4
Q ss_pred CCcccccccccccCCC-ceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 124 LDTECVICLSNFLPGE-RVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 124 ~~~~CaICle~f~~~~-~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
.+.+|+||+++|.+++ .++.++ |+|.||..||..|++.+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4578999999996654 567788 9999999999999999999999998764
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.53 E-value=1e-14 Score=108.01 Aligned_cols=52 Identities=25% Similarity=0.671 Sum_probs=42.6
Q ss_pred CCcccccccccccCCC---------------ceEEcCCCCcccChHHHHHHHh-----cCCCCcccccccccc
Q 027813 124 LDTECVICLSNFLPGE---------------RVRMLPICNHGFHVRCIDKWLR-----SHSSCPKCRRCLIET 176 (218)
Q Consensus 124 ~~~~CaICle~f~~~~---------------~vr~lp~C~H~FH~~CI~~Wl~-----~~~~CP~CR~~l~~~ 176 (218)
.+.+|+||+++|.... .++.++ |+|.||..||+.|+. .+.+||+||..+.+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3469999999996643 345778 999999999999994 467899999988755
No 10
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.6e-15 Score=103.59 Aligned_cols=55 Identities=25% Similarity=0.619 Sum_probs=45.8
Q ss_pred CCCCCCcccccccccccCCCceEEcCCCC-----cccChHHHHHHHhcC--CCCcccccccccc
Q 027813 120 KLPGLDTECVICLSNFLPGERVRMLPICN-----HGFHVRCIDKWLRSH--SSCPKCRRCLIET 176 (218)
Q Consensus 120 ~~~~~~~~CaICle~f~~~~~vr~lp~C~-----H~FH~~CI~~Wl~~~--~~CP~CR~~l~~~ 176 (218)
.....+..|.||+++|..++.+ ++| |+ |.||.+||++||..+ .+||+||..+.-.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 3345667999999999887776 689 96 999999999999765 4899999988643
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.52 E-value=6.6e-15 Score=108.16 Aligned_cols=51 Identities=31% Similarity=0.668 Sum_probs=43.3
Q ss_pred CCCcccccccccccCC---------------CceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 123 GLDTECVICLSNFLPG---------------ERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 123 ~~~~~CaICle~f~~~---------------~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
..++.|+||+++|... ..++.++ |+|.||.+||+.||+.+.+||+||+.+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 3567999999999754 1356677 9999999999999999999999999853
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1e-14 Score=98.08 Aligned_cols=52 Identities=23% Similarity=0.616 Sum_probs=44.1
Q ss_pred CCCcccccccccccCC----CceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 123 GLDTECVICLSNFLPG----ERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 123 ~~~~~CaICle~f~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
..+.+|+||++.|.+. ..+..++ |||.||..||+.|++.+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4557899999999753 3456788 99999999999999999999999998753
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.50 E-value=7.4e-15 Score=99.47 Aligned_cols=53 Identities=25% Similarity=0.675 Sum_probs=45.3
Q ss_pred CCCcccccccccccC----CCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLP----GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~----~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
.++.+|+||++.|.+ ++.+..++ |||.||..||+.|++.+.+||+||..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 456799999999865 34557788 999999999999999999999999988754
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.48 E-value=1e-14 Score=96.59 Aligned_cols=52 Identities=25% Similarity=0.687 Sum_probs=44.5
Q ss_pred CCcccccccccccC----CCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 124 LDTECVICLSNFLP----GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 124 ~~~~CaICle~f~~----~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
++.+|+||++.|.. ++.+..++ |||.||..||..|++.+.+||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 35689999999965 24556778 999999999999999999999999988754
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.47 E-value=6.2e-14 Score=94.21 Aligned_cols=51 Identities=31% Similarity=0.772 Sum_probs=43.8
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
+.+.+|+||++.+.+ .+..++ |||.||..||..|++.+.+||+||..+...
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 345789999999864 357788 999999999999999999999999988644
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.8e-14 Score=96.57 Aligned_cols=49 Identities=39% Similarity=0.920 Sum_probs=43.2
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
..+..|+||++.+.+ ..++ |+|.||..||..|+..+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 445799999999866 5678 999999999999999999999999988754
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=5.7e-14 Score=95.42 Aligned_cols=50 Identities=30% Similarity=0.547 Sum_probs=43.4
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
..+.+|+||++.+.+ ...++ |+|.||..||..|++.+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 445789999999855 45678 999999999999999999999999998754
No 18
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.43 E-value=1.5e-14 Score=107.90 Aligned_cols=51 Identities=33% Similarity=0.746 Sum_probs=1.5
Q ss_pred CCCcccccccccccC-------------CCc--eEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 123 GLDTECVICLSNFLP-------------GER--VRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 123 ~~~~~CaICle~f~~-------------~~~--vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
..++.|+||+++|.. ++. +..++ |+|.||.+||+.||+.+.+||+||+++.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CCC----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 456799999999975 222 22346 9999999999999999999999999854
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2e-13 Score=92.91 Aligned_cols=51 Identities=25% Similarity=0.545 Sum_probs=42.8
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
..+..|+||++.|.+ .+.+++ |+|.||..||..|++.+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 445799999999875 343347 999999999999999999999999988754
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.8e-13 Score=95.31 Aligned_cols=53 Identities=30% Similarity=0.627 Sum_probs=45.2
Q ss_pred CCCcccccccccccCCCc-eEEcCCCCcccChHHHHHHHhcC---CCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGER-VRMLPICNHGFHVRCIDKWLRSH---SSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~-vr~lp~C~H~FH~~CI~~Wl~~~---~~CP~CR~~l~~~ 176 (218)
....+|+||++.|..++. .++++ |||.||..||..|++.+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 445789999999988765 67788 99999999999999876 7899999987643
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=5.8e-13 Score=92.61 Aligned_cols=48 Identities=23% Similarity=0.466 Sum_probs=41.8
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
.....|+||++.|.+ ..+++ |||.||..||..|++...+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 445789999999855 45688 9999999999999999999999999875
No 22
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=5.6e-13 Score=91.44 Aligned_cols=51 Identities=27% Similarity=0.719 Sum_probs=42.6
Q ss_pred CCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcC--CCCccccccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH--SSCPKCRRCLIE 175 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~~CP~CR~~l~~ 175 (218)
.+..++|+||.+.+..++... . |+|.||.+||++||+.+ .+||+||....-
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~--~-C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCE--T-CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECS--S-SCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCCCCcCcchhhHcccCCccC--C-CCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 345579999999998765543 4 99999999999999887 789999987653
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.35 E-value=8.3e-13 Score=90.42 Aligned_cols=51 Identities=22% Similarity=0.563 Sum_probs=41.8
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcC--CCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH--SSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~~CP~CR~~l~~~ 176 (218)
..+..|+||++.|.+ ..+++.|||.||..||..|++.+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 445789999999875 34566699999999999999865 6899999976644
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1e-12 Score=89.29 Aligned_cols=50 Identities=24% Similarity=0.601 Sum_probs=41.7
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHh---cCCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR---SHSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~~CP~CR~~l~~~ 176 (218)
..+..|+||++.|.+ ..+++ |||.||..||..|++ .+..||+||..+...
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 445799999999875 55678 999999999999996 456899999988654
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.31 E-value=7.3e-13 Score=101.41 Aligned_cols=48 Identities=31% Similarity=0.912 Sum_probs=41.9
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
+..|+||++.|.+ ..+++ |||.||..||..|+..+.+||+||.++...
T Consensus 53 ~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 3579999999865 56788 999999999999999999999999988543
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=87.42 Aligned_cols=50 Identities=20% Similarity=0.522 Sum_probs=41.1
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHh-cCCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR-SHSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~~CP~CR~~l~~~ 176 (218)
..+..|+||++.+.+. ..++ |||.||..||..|+. .+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 3457899999998753 2367 999999999999994 567899999988654
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.27 E-value=1.2e-12 Score=98.47 Aligned_cols=53 Identities=23% Similarity=0.605 Sum_probs=45.3
Q ss_pred CCCcccccccccccCC----CceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPG----ERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
.++.+|+||++.|.+. +.+..++ |||.||..||+.|++.+.+||+||..+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 3457899999999653 4557788 999999999999999999999999988755
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.26 E-value=2.9e-12 Score=92.77 Aligned_cols=48 Identities=29% Similarity=0.735 Sum_probs=41.0
Q ss_pred CcccccccccccCCCceEE-cCCCCcccChHHHHHHHhcC-CCCcccccccccc
Q 027813 125 DTECVICLSNFLPGERVRM-LPICNHGFHVRCIDKWLRSH-SSCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~-lp~C~H~FH~~CI~~Wl~~~-~~CP~CR~~l~~~ 176 (218)
+..|+||++.|.. ... ++ |||.||..||..|+..+ .+||+||..+...
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 22 VFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 4689999999965 445 77 99999999999999887 6899999998643
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=6.5e-12 Score=83.03 Aligned_cols=43 Identities=28% Similarity=0.670 Sum_probs=36.3
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHh---cCCCCccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR---SHSSCPKC 169 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~~CP~C 169 (218)
..+..|+||++.|.+ ..+++ |||.||..||..|++ .+.+||+|
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 455799999999875 45678 999999999999998 45689998
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.26 E-value=5e-12 Score=87.07 Aligned_cols=49 Identities=24% Similarity=0.510 Sum_probs=41.6
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhc-CCCCccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS-HSSCPKCRRCLIE 175 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~ 175 (218)
..+..|+||++.|.+ ..+++ |||.||..||..|+.. +.+||+||..+..
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 345799999999865 45678 9999999999999987 7889999998764
No 31
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.25 E-value=2.7e-12 Score=96.54 Aligned_cols=53 Identities=25% Similarity=0.675 Sum_probs=45.0
Q ss_pred CCCcccccccccccC----CCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLP----GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~----~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
+....|+||++.|.. +.....++ |||.||..||+.|++.+.+||+||.++.+.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 456789999999965 23446677 999999999999999999999999998765
No 32
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.24 E-value=6.8e-12 Score=87.29 Aligned_cols=49 Identities=31% Similarity=0.535 Sum_probs=41.4
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhc------CCCCccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS------HSSCPKCRRCLIE 175 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~------~~~CP~CR~~l~~ 175 (218)
..+..|+||++.|.+ ..+++ |+|.||..||..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCc---ceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 345799999999865 34688 9999999999999987 6689999998764
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=6.3e-12 Score=87.47 Aligned_cols=49 Identities=31% Similarity=0.615 Sum_probs=41.6
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhc------CCCCccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS------HSSCPKCRRCLIE 175 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~------~~~CP~CR~~l~~ 175 (218)
..+.+|+||++.|.+ ...++ |||.||..||..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 345799999999865 34578 9999999999999977 7789999998875
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.23 E-value=6.4e-12 Score=90.56 Aligned_cols=47 Identities=30% Similarity=0.716 Sum_probs=40.8
Q ss_pred CcccccccccccCCCceEEc-CCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 125 DTECVICLSNFLPGERVRML-PICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~l-p~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
+..|+||++.|.+ ...+ + |||.||..||..|+..+.+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC---cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4689999999875 3444 7 99999999999999999999999998875
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.22 E-value=2e-12 Score=89.16 Aligned_cols=49 Identities=29% Similarity=0.511 Sum_probs=41.3
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhc-------CCCCccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS-------HSSCPKCRRCLIE 175 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~-------~~~CP~CR~~l~~ 175 (218)
..+..|+||++.|.+ ...++ |||.||..||..|+.. ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 445799999999865 34578 9999999999999976 5679999998875
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=8e-12 Score=80.95 Aligned_cols=43 Identities=28% Similarity=0.878 Sum_probs=35.6
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHh---cCCCCccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR---SHSSCPKC 169 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~~CP~C 169 (218)
..+..|+||++.|.+. .+++ |||.||..||..|+. .+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4457999999999763 4578 999999999999954 56789998
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=6.7e-12 Score=83.54 Aligned_cols=51 Identities=22% Similarity=0.515 Sum_probs=40.6
Q ss_pred Ccccccccc-cccCCCce-EEcCCCCcccChHHHHHHHhc-CCCCcccccccccc
Q 027813 125 DTECVICLS-NFLPGERV-RMLPICNHGFHVRCIDKWLRS-HSSCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle-~f~~~~~v-r~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~~ 176 (218)
+..|+||++ .|...... ..++ |||.||..||+.|+.+ +..||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 468999999 77665433 4567 9999999999999765 46799999988654
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.19 E-value=8.3e-12 Score=91.43 Aligned_cols=50 Identities=28% Similarity=0.672 Sum_probs=42.1
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
.+..|+||++.|.+ .+..++ |||.||..||..|+..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 34689999999865 344447 999999999999999999999999988753
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.16 E-value=1.6e-11 Score=92.00 Aligned_cols=47 Identities=28% Similarity=0.619 Sum_probs=40.3
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCC-CCccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHS-SCPKCRRCLIE 175 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-~CP~CR~~l~~ 175 (218)
+..|+||++.|.+ ...++ |||.||..||..|+..+. +||+||..+..
T Consensus 52 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4689999999975 55678 999999999999998654 89999998865
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.16 E-value=2.1e-11 Score=95.82 Aligned_cols=48 Identities=35% Similarity=0.737 Sum_probs=40.7
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhc-CCCCccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS-HSSCPKCRRCLIE 175 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~ 175 (218)
+..|+||++.|.+ .+..++ |||.||..||..|+.. +.+||+||..+..
T Consensus 54 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4589999999875 444457 9999999999999987 7789999998853
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.14 E-value=3.9e-11 Score=85.16 Aligned_cols=49 Identities=22% Similarity=0.584 Sum_probs=40.4
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcC--CCCcccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH--SSCPKCRRCLI 174 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~~CP~CR~~l~ 174 (218)
..+..|+||++.|.+ ..+++.|||.||..||..|+..+ ..||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 455799999999875 44666699999999999999754 58999999874
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.11 E-value=2.8e-11 Score=88.73 Aligned_cols=48 Identities=29% Similarity=0.567 Sum_probs=39.8
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCC---CCcccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHS---SCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~---~CP~CR~~l~~~ 176 (218)
...|+||++.|.+ ...++ |||.||..||..|+..+. +||+||..+...
T Consensus 21 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 3589999999865 33478 999999999999998754 899999987653
No 43
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.08 E-value=6e-11 Score=79.01 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=40.3
Q ss_pred CCcccccccccccCCCceEEc--CCCCcc-cChHHHHHHHhcCCCCccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRML--PICNHG-FHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~l--p~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
.+.+|.||++.+.+ ...+ | |||. |+..|+..|.+.+..||+||+.+..
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 45689999998755 3344 9 9999 7999999999988899999998754
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.07 E-value=7.2e-11 Score=91.65 Aligned_cols=48 Identities=25% Similarity=0.551 Sum_probs=40.9
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCC-CCcccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHS-SCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-~CP~CR~~l~~~ 176 (218)
...|+||++.|.+ ..+++ |||.||..||..|+.... +||+||..+...
T Consensus 78 ~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3689999999865 45588 999999999999998754 899999988754
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.07 E-value=5.7e-11 Score=88.36 Aligned_cols=50 Identities=34% Similarity=0.626 Sum_probs=42.0
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCC-CCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHS-SCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-~CP~CR~~l~~~ 176 (218)
..+..|+||++.+.+ ...++ |||.||..||..|+..+. +||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 345799999999865 45678 999999999999998765 899999988754
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.07 E-value=8.9e-11 Score=86.90 Aligned_cols=48 Identities=31% Similarity=0.544 Sum_probs=41.1
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhc-CCCCcccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS-HSSCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~~ 176 (218)
+..|+||++.|.+ ...++ |||.||..||..|+.. +.+||+||..+...
T Consensus 23 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 4689999999865 44578 9999999999999987 77899999988754
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.05 E-value=3e-11 Score=89.32 Aligned_cols=48 Identities=29% Similarity=0.690 Sum_probs=40.8
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhc-CCCCccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS-HSSCPKCRRCLIE 175 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~ 175 (218)
.+..|+||++.|.+ ...++ |||.||..||..|+.. +.+||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 34689999999865 45678 9999999999999976 6689999998864
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.04 E-value=3e-10 Score=78.64 Aligned_cols=53 Identities=19% Similarity=0.374 Sum_probs=41.3
Q ss_pred CCCcccccccccccCCCce-EEcCCCCcccChHHHHHHHhc-CCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERV-RMLPICNHGFHVRCIDKWLRS-HSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~v-r~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~~ 176 (218)
.++.+|+||++.+...+.. .-++ |||.||..|+..|+.. +..||+||+.+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 4557999999998654432 2245 9999999999999754 56799999988765
No 49
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.02 E-value=1.3e-10 Score=77.02 Aligned_cols=51 Identities=20% Similarity=0.396 Sum_probs=40.4
Q ss_pred CCCcccccccccccCCCceEEcCCCCcc-cChHHHHHHHhcCCCCccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHG-FHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
+.+.+|.||++...+. .+..+| |||. |+..|+..|.+.+..||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 3457899999986541 122238 9998 9999999999888899999998854
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.02 E-value=1.8e-10 Score=101.76 Aligned_cols=49 Identities=31% Similarity=0.648 Sum_probs=42.6
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHh-cCCCCcccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR-SHSSCPKCRRCLIET 176 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~~CP~CR~~l~~~ 176 (218)
...+|+||++.+.+ ...+| |||.||..||..|+. .+.+||+||..+...
T Consensus 331 ~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 34699999999855 66788 999999999999998 678899999988765
No 51
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.97 E-value=2e-10 Score=99.32 Aligned_cols=57 Identities=25% Similarity=0.600 Sum_probs=43.2
Q ss_pred CCCCcccccccccccCCCceE----EcCCCCcccChHHHHHHHhcC-----------CCCcccccccccccc
Q 027813 122 PGLDTECVICLSNFLPGERVR----MLPICNHGFHVRCIDKWLRSH-----------SSCPKCRRCLIETCE 178 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr----~lp~C~H~FH~~CI~~Wl~~~-----------~~CP~CR~~l~~~~~ 178 (218)
.+...+|+||++.+.++..+- ..+.|+|.||..||.+||++. .+||+||+++.-+..
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~ 376 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence 346689999999998744331 123499999999999999752 359999998876543
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=1.1e-10 Score=75.54 Aligned_cols=47 Identities=21% Similarity=0.409 Sum_probs=39.1
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
.+...|+||++.|.+ .++++ |||.||..||..| ...||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 455789999999976 45788 9999999999884 66899999987644
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.94 E-value=3.2e-10 Score=87.08 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=40.3
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCC-CCcccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHS-SCPKCRRCLI 174 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-~CP~CR~~l~ 174 (218)
..+..|+||++.|.+ ...++ |||.||..||..|+.... +||+||.++.
T Consensus 29 ~~~~~C~IC~~~~~~---pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRR---PFQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcC---cEECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 455799999999866 34577 999999999999998664 8999999764
No 54
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.94 E-value=1.1e-09 Score=76.96 Aligned_cols=49 Identities=16% Similarity=0.063 Sum_probs=42.9
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
....|+||++-|.+ ..+++ |||.|...||..|+..+.+||+||..+...
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred hheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 45799999999876 56788 999999999999999889999999887643
No 55
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.90 E-value=8.5e-10 Score=72.50 Aligned_cols=48 Identities=23% Similarity=0.592 Sum_probs=37.6
Q ss_pred CCCcccccccccccCCCceEEcCCCC--c---ccChHHHHHHHhc--CCCCcccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICN--H---GFHVRCIDKWLRS--HSSCPKCRRCLI 174 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~--H---~FH~~CI~~Wl~~--~~~CP~CR~~l~ 174 (218)
++...|.||+++. ++.+ ++| |. | .||..|+++|+.. +.+||+||..+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4557999999983 3344 578 76 3 9999999999964 678999998764
No 56
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.89 E-value=9.3e-10 Score=79.69 Aligned_cols=48 Identities=17% Similarity=0.049 Sum_probs=42.4
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
....|+||++-|.+ ..+++ |||.|+..||..|+..+.+||+||..+..
T Consensus 28 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 45789999999876 56788 99999999999999988999999998764
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.88 E-value=4.6e-10 Score=76.69 Aligned_cols=44 Identities=23% Similarity=0.662 Sum_probs=37.9
Q ss_pred CcccccccccccCCCceEEcCCCCcc-cChHHHHHHHhcCCCCcccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHG-FHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
+..|+||++.+.+ ...+| |||. |+..|+..| ..||+||..+...
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 3689999998765 66789 9999 999999999 7899999988654
No 58
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.87 E-value=1.4e-09 Score=78.41 Aligned_cols=48 Identities=19% Similarity=0.047 Sum_probs=42.2
Q ss_pred CCcccccccccccCCCceEEcCCCC-cccChHHHHHHHhcCCCCccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICN-HGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~-H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
.+..|+||++-|.+ ..+++ || |.|...||..|+..+.+||+||..+..
T Consensus 21 ~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 45789999999876 55688 99 999999999999988899999998764
No 59
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=4.1e-10 Score=83.56 Aligned_cols=44 Identities=23% Similarity=0.504 Sum_probs=37.8
Q ss_pred CcccccccccccCCCceEEc-CCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 125 DTECVICLSNFLPGERVRML-PICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~l-p~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
...|+||++.|.+ ...+ + |||.||..||..|+. ..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 4689999999865 3455 7 999999999999988 78999999875
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=8.3e-09 Score=69.36 Aligned_cols=47 Identities=28% Similarity=0.731 Sum_probs=38.9
Q ss_pred CCCCcccccccccccCCCceEEcCCCCcc-cChHHHHHHHhcCCCCcccccccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLPICNHG-FHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
...+..|.||++...+ +..+| |+|. |+..|+.. ...||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 3456799999998654 77889 9999 99999984 57899999988764
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.74 E-value=4.3e-09 Score=82.82 Aligned_cols=50 Identities=34% Similarity=0.622 Sum_probs=41.7
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcC-CCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH-SSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-~~CP~CR~~l~~~ 176 (218)
.....|+||++.|.+ ...++ |||.|+..||..|+... .+||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcC---cEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 445799999999876 35578 99999999999999764 4899999988754
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=6.7e-09 Score=73.95 Aligned_cols=52 Identities=23% Similarity=0.603 Sum_probs=41.6
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhc--------CCCCcc--cccc--cccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS--------HSSCPK--CRRC--LIET 176 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~--------~~~CP~--CR~~--l~~~ 176 (218)
...+|+||++++...+.+++.+ |||.|+.+|+..|+.. ...||. |+.. +.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 4568999999998766666667 9999999999999853 236999 9988 5443
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=6.7e-09 Score=70.94 Aligned_cols=43 Identities=23% Similarity=0.682 Sum_probs=35.6
Q ss_pred CcccccccccccCCCceEEcCCCCcc-cChHHHHHHHhcCCCCccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHG-FHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
+.+|+||++.+.+ ...+| |||. |+..|+.. ...||+||..+..
T Consensus 25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 3589999999755 55688 9999 99999964 4789999998864
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=1.3e-08 Score=72.55 Aligned_cols=46 Identities=20% Similarity=0.448 Sum_probs=37.1
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcC------CCCcc--cccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH------SSCPK--CRRC 172 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~------~~CP~--CR~~ 172 (218)
.+..|+||++.|.+ ..+++.|||.|+..||..|+..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45689999999875 44553499999999999999764 48999 9855
No 65
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.66 E-value=1.5e-08 Score=84.99 Aligned_cols=49 Identities=14% Similarity=0.063 Sum_probs=41.3
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhc-CCCCccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS-HSSCPKCRRCLIE 175 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~ 175 (218)
.....|+||++-|.+ ..+++ |||.|+..||..|+.. +.+||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 345789999999866 55788 9999999999999976 4459999998864
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.59 E-value=1.7e-08 Score=69.85 Aligned_cols=44 Identities=25% Similarity=0.644 Sum_probs=37.6
Q ss_pred CcccccccccccCCCceEEcCCCCcc-cChHHHHHHHhcCCCCcccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHG-FHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
+..|.||++.+.+ +..+| |||. |+..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 3589999998755 67789 9999 999999987 4899999988765
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.50 E-value=7.2e-08 Score=76.72 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=41.2
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcC-CCCccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH-SSCPKCRRCLIE 175 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-~~CP~CR~~l~~ 175 (218)
.....|+||++-|.+ ..+++ |||.|...||..|+..+ .+||+||..+..
T Consensus 104 p~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 455799999999875 55678 99999999999999764 579999988764
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.43 E-value=1.2e-07 Score=62.22 Aligned_cols=47 Identities=11% Similarity=0.084 Sum_probs=40.5
Q ss_pred cccccccccccCCCceEEc-CCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 126 TECVICLSNFLPGERVRML-PICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~l-p~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
..|+||++.+.+ . .++ + |||.|-..||.+|++.+.+||+++..|...
T Consensus 4 ~~CpIs~~~m~d--P-V~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRR--P-VLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSS--E-EEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCC--C-EEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 579999999874 3 455 6 999999999999999888999999988654
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.39 E-value=6.8e-08 Score=84.39 Aligned_cols=45 Identities=27% Similarity=0.695 Sum_probs=38.3
Q ss_pred CCcccccccccccCCCceEEcCCCCcc-cChHHHHHHHhcCCCCcccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHG-FHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
.+..|+||++.+.. ...+| |||. ||..|+..| ..||+||..+...
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 34689999999865 66779 9999 999999998 7899999987643
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.29 E-value=4e-07 Score=76.19 Aligned_cols=49 Identities=22% Similarity=0.533 Sum_probs=39.7
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcC--CCCcc--ccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH--SSCPK--CRRCLIE 175 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~~CP~--CR~~l~~ 175 (218)
....|+||++.|.+ .|+... |||.|+..||..|+..+ .+||+ ||..+..
T Consensus 180 ~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 44689999999854 565556 99999999999999764 46999 9987654
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.12 E-value=1.5e-06 Score=61.98 Aligned_cols=50 Identities=24% Similarity=0.427 Sum_probs=39.5
Q ss_pred ccccccccccCCCceEEcCCCCcccChHHHHHHHhc-CCCCccccccccccccc
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS-HSSCPKCRRCLIETCEN 179 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~~~~~ 179 (218)
-|.+|--.+ ....|++| |+|+|+.+|+..|.++ .++||.|+..+..-+..
T Consensus 3 fC~~C~~Pi--~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBC--SEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCe--EEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 477775554 34678999 9999999999999855 67899999988755443
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.94 E-value=4.4e-06 Score=69.30 Aligned_cols=49 Identities=27% Similarity=0.688 Sum_probs=39.3
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCC--CCcccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHS--SCPKCRRCLI 174 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~--~CP~CR~~l~ 174 (218)
+....|+||.+-...|..+ +.|+|.||..|+..|++.+. .||.|+....
T Consensus 178 ~~i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 178 DAVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TTCCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 3467999999998876333 33999999999999997754 8999988643
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.31 E-value=0.0032 Score=44.18 Aligned_cols=47 Identities=23% Similarity=0.482 Sum_probs=38.2
Q ss_pred CCcccccccccccCCCceEEcCCC-CcccChHHHHHHHhcCCCCcccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPIC-NHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C-~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
+-.-|-.||-+.+. .+. | .|.++..|+..-|.....||+|...|...
T Consensus 27 G~~nCKsCWf~~k~-----LV~-C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-----LVE-CNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCSS-----EEE-CSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CcccChhhccccCC-----eee-ecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 44679999977553 334 6 59999999999999999999999998755
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.27 E-value=0.0033 Score=41.46 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=34.5
Q ss_pred CCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCC----CCccccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHS----SCPKCRRCL 173 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~----~CP~CR~~l 173 (218)
...+..|.||.+. ++ +..-..|...||..|++..|.... .||.|+...
T Consensus 9 ~~~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 9 LAPGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCTTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3455789999743 33 444455999999999999886543 599996543
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.82 E-value=0.024 Score=39.87 Aligned_cols=34 Identities=12% Similarity=0.331 Sum_probs=26.8
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHH
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKW 159 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~W 159 (218)
+..|.||+++|.......-+. |+|.|+..|+..|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 468999998765544444578 9999999999983
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.31 E-value=0.02 Score=37.17 Aligned_cols=49 Identities=22% Similarity=0.524 Sum_probs=35.6
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHh-----cCCCCccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR-----SHSSCPKCRR 171 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~~CP~CR~ 171 (218)
++...|+||...+.++...+.-..|..-||..|+..-.. ....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 455689999999876555555555999999999875432 2456999965
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=93.24 E-value=0.071 Score=36.57 Aligned_cols=35 Identities=20% Similarity=0.467 Sum_probs=24.2
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHH
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKW 159 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~W 159 (218)
..++.|.||- .|..++...- ..|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~-~~t~~~l~pC-RvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFPC-RVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSSC-SSSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceecc-ccccccccHhhcccc
Confidence 4678999995 4444442211 128999999999996
No 78
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=92.95 E-value=0.33 Score=30.44 Aligned_cols=35 Identities=14% Similarity=0.047 Sum_probs=24.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 027813 49 HSNVVAVLSFLICSLICSLGFHFLLKCVFIRCSRL 83 (218)
Q Consensus 49 ~~~viiil~ill~~li~~l~l~~i~r~~~~R~~~~ 83 (218)
.+.++++++++..++++.+.++++.+|-|.+|.+.
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 34566677777777777777777777777666553
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=92.11 E-value=0.1 Score=33.48 Aligned_cols=45 Identities=24% Similarity=0.741 Sum_probs=32.1
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhc----CCCCccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS----HSSCPKCRR 171 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~ 171 (218)
..+..|.||.+. + .+..-..|...||..|++.-+.. .-.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 456789999863 3 34444559999999999986533 225999964
No 80
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=92.06 E-value=0.55 Score=29.39 Aligned_cols=34 Identities=24% Similarity=0.073 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 027813 50 SNVVAVLSFLICSLICSLGFHFLLKCVFIRCSRL 83 (218)
Q Consensus 50 ~~viiil~ill~~li~~l~l~~i~r~~~~R~~~~ 83 (218)
+.++++++++..++++++.++++.+|-|.+|.+.
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCc
Confidence 4566777777777777777777777777666553
No 81
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=91.84 E-value=0.022 Score=36.56 Aligned_cols=50 Identities=24% Similarity=0.675 Sum_probs=34.7
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcC----CCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH----SSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~~CP~CR~~l~~~ 176 (218)
.++..|.||... ++ +..-..|.-.||..|+++=+... -.||.|+.....+
T Consensus 3 ~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~ 56 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKK 56 (60)
T ss_dssp CCCSSCTTTCCC---SS-CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHT
T ss_pred CCCCCCcCCCCC---Cc-EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhch
Confidence 346789999863 44 44444599999999999655432 2599997766544
No 82
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=91.63 E-value=0.075 Score=41.96 Aligned_cols=49 Identities=16% Similarity=0.347 Sum_probs=36.0
Q ss_pred cccccccccccCCCc---eEEcCCCCcccChHHHHHH------Hh-----cCCCCcccccccc
Q 027813 126 TECVICLSNFLPGER---VRMLPICNHGFHVRCIDKW------LR-----SHSSCPKCRRCLI 174 (218)
Q Consensus 126 ~~CaICle~f~~~~~---vr~lp~C~H~FH~~CI~~W------l~-----~~~~CP~CR~~l~ 174 (218)
..|+||...|.+++. ++.-..|..-||..|+.-= +. ....||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 479999999988763 5555569999999997431 11 1568999987544
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=91.48 E-value=0.11 Score=40.77 Aligned_cols=47 Identities=26% Similarity=0.489 Sum_probs=33.9
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcC----CCCcccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH----SSCPKCRRCLI 174 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~~CP~CR~~l~ 174 (218)
+++.|.+|.+. |+ +..-..|.-.||..|+++-+... -.||.|+..-.
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 56789999843 44 44445599999999998876542 35999976543
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=91.03 E-value=0.055 Score=43.35 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=34.5
Q ss_pred CCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcC----CCCccccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH----SSCPKCRRCL 173 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~~CP~CR~~l 173 (218)
..+++.|.+|... ..+..-..|...||..|+++.+... -.||.|+..-
T Consensus 4 d~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3456789999743 3355556699999999998876543 3599997643
No 85
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=90.22 E-value=0.057 Score=34.73 Aligned_cols=48 Identities=23% Similarity=0.534 Sum_probs=32.4
Q ss_pred CCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcC----CCCccccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH----SSCPKCRRCL 173 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~~CP~CR~~l 173 (218)
..++..|.||-+. ++ +..-..|...||..|++.-+... -.||.|+...
T Consensus 6 d~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3456789999852 33 33334489999999998655432 2599997654
No 86
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=90.16 E-value=0.073 Score=35.52 Aligned_cols=51 Identities=20% Similarity=0.284 Sum_probs=35.8
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhc----CCCCcccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS----HSSCPKCRRCLI 174 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~l~ 174 (218)
.+...|.||-.... ++.+..-..|.-.||..|+..-... .-.||.|+..+-
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34467999987753 4445555559999999999865532 345999977654
No 87
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.44 E-value=0.16 Score=31.08 Aligned_cols=44 Identities=25% Similarity=0.612 Sum_probs=29.3
Q ss_pred ccccccccccCCCceEEcCCCCcccChHHHHHHHhcC----CCCccccc
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH----SSCPKCRR 171 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~~CP~CR~ 171 (218)
.|.||...-..+ .+..-..|...||..|+++=+... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998664333 344444599999999997644332 24999864
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.78 E-value=0.065 Score=33.78 Aligned_cols=46 Identities=28% Similarity=0.785 Sum_probs=31.6
Q ss_pred CCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcC----CCCccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH----SSCPKCRR 171 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~~CP~CR~ 171 (218)
..++..|.||.+. ++ +..-..|...||..|+++=+... -.||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~-ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SC-CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---Ce-EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456789999864 33 44444599999999998755432 24888853
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=87.73 E-value=0.18 Score=36.22 Aligned_cols=48 Identities=21% Similarity=0.507 Sum_probs=31.6
Q ss_pred CCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhc----CCCCcccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS----HSSCPKCR 170 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR 170 (218)
..+++.|.||.+.-+.++.+ .-..|+..||..|++.++.. .-.||.|+
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll-~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQF-FCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSE-ECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCe-ECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 35678999998763322223 33449999999999987642 22466654
No 90
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=87.51 E-value=0.45 Score=30.92 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=27.4
Q ss_pred CCCcccccccccccCCCceEEcC-CCCcccChHHHHH
Q 027813 123 GLDTECVICLSNFLPGERVRMLP-ICNHGFHVRCIDK 158 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp-~C~H~FH~~CI~~ 158 (218)
+....|.+|...+.+++..+.-. .|.--||..|+.-
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 34568999999998877766665 6999999999753
No 91
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.21 E-value=0.55 Score=31.53 Aligned_cols=49 Identities=18% Similarity=0.472 Sum_probs=33.4
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHh-----cCCCCccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR-----SHSSCPKCRRCL 173 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~~CP~CR~~l 173 (218)
....| ||-..+..+...+.-..|..-||..|+.---. ....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34567 99988864444445455999999999864321 244699997654
No 92
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=86.88 E-value=0.11 Score=33.88 Aligned_cols=46 Identities=28% Similarity=0.652 Sum_probs=32.1
Q ss_pred CCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcC----CCCccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH----SSCPKCRR 171 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~~CP~CR~ 171 (218)
..++..|.||.+. ++ +..-..|.-.||..|+.+-+... -.||.|..
T Consensus 5 ~~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 5 QKNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 3466799999863 33 44444599999999998655432 24999954
No 93
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.80 E-value=0.36 Score=33.45 Aligned_cols=47 Identities=28% Similarity=0.557 Sum_probs=33.4
Q ss_pred CCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCC----CCcccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHS----SCPKCRRC 172 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~----~CP~CR~~ 172 (218)
.+++..|.+|.+. ++ +..-..|.-.||..|+++=+..-. .||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4566799999864 34 444445899999999987664422 59999754
No 94
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=86.20 E-value=0.27 Score=30.39 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=30.9
Q ss_pred ccccccccccCCCceEEcC-CCCcccChHHHHHHH----hcCCCCcccc
Q 027813 127 ECVICLSNFLPGERVRMLP-ICNHGFHVRCIDKWL----RSHSSCPKCR 170 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp-~C~H~FH~~CI~~Wl----~~~~~CP~CR 170 (218)
.|.+|...+.+++..+.-. .|.--||..|+.--. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4779999887666555555 589999999976432 2456799885
No 95
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=85.76 E-value=0.92 Score=26.87 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027813 50 SNVVAVLSFLICSLICSLGFHFLLKCVFIRCS 81 (218)
Q Consensus 50 ~~viiil~ill~~li~~l~l~~i~r~~~~R~~ 81 (218)
+.++++++++...+++.+.++++.+|-|.+|.
T Consensus 9 p~wiIi~s~l~GLllL~li~~~LwK~GFFkR~ 40 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMWKVGFFKRN 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcccCC
Confidence 45666777777777766666666666655543
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=85.63 E-value=0.23 Score=35.76 Aligned_cols=46 Identities=26% Similarity=0.570 Sum_probs=31.5
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcC----CCCccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH----SSCPKCRR 171 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~~CP~CR~ 171 (218)
..|.||.+.-.+++.+..-..|...||..|+++-|..- -.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 36889986533334455555599999999998765442 25999974
No 97
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.94 E-value=0.37 Score=32.07 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=31.8
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHH---------hcCCCCccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWL---------RSHSSCPKCRRCL 173 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl---------~~~~~CP~CR~~l 173 (218)
....| ||-..+..+. .+.-..|..-||..|+..-. .....||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~~~-MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 15 NALYC-ICRQPHNNRF-MICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TCCCS-TTCCCCCSSC-EEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCEE-ECCCccCCCC-EEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 34567 8988875433 33444599999999985321 2356799997543
No 98
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.78 E-value=0.14 Score=35.78 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=34.1
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcC----CCCcccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH----SSCPKCRRCLI 174 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~~CP~CR~~l~ 174 (218)
.++..|.||...-.. +.+..-..|...||..|+++=|... -.||.|+..-.
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~ 68 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAEC 68 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCccc
Confidence 345689999876433 3344445599999999998544332 24999976543
No 99
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.57 E-value=0.21 Score=33.03 Aligned_cols=48 Identities=27% Similarity=0.402 Sum_probs=33.0
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHH----hcCCCCcccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWL----RSHSSCPKCRRC 172 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl----~~~~~CP~CR~~ 172 (218)
....| ||-..+..++..+.-..|..-||..|+..-- .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 34568 7988776665455555599999999987532 123469999754
No 100
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=83.01 E-value=0.31 Score=37.59 Aligned_cols=49 Identities=20% Similarity=0.409 Sum_probs=33.6
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHH-----hcCCCCcccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWL-----RSHSSCPKCRRC 172 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl-----~~~~~CP~CR~~ 172 (218)
+....| +|...+..+..+..-..|...||..|+..-- ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 345689 9998876555555555599999999986322 124469999763
No 101
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=81.30 E-value=0.62 Score=32.71 Aligned_cols=45 Identities=22% Similarity=0.418 Sum_probs=30.2
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhc---CCCCcccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS---HSSCPKCRRC 172 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~---~~~CP~CR~~ 172 (218)
..| ||-.....+..| .-..|.-.||..|+..=+.. .-.||.|+..
T Consensus 29 vrC-iC~~~~~~~~mi-~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMI-CCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCSSCEE-EBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred EEe-ECCCccCCCcEE-EcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 467 897776555443 44459999999998763322 2369999743
No 102
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=80.55 E-value=0.87 Score=29.22 Aligned_cols=50 Identities=20% Similarity=0.536 Sum_probs=33.8
Q ss_pred CCCcccccccccccC-CCceEEcCCCCcccChHHHHHHHh-------cCCCCcccccc
Q 027813 123 GLDTECVICLSNFLP-GERVRMLPICNHGFHVRCIDKWLR-------SHSSCPKCRRC 172 (218)
Q Consensus 123 ~~~~~CaICle~f~~-~~~vr~lp~C~H~FH~~CI~~Wl~-------~~~~CP~CR~~ 172 (218)
.++..|.||...... +..+..-..|.-.||..|+..=+. ..-.||.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456799999976533 234445556999999999886432 12358888543
No 103
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=80.07 E-value=1.7 Score=32.72 Aligned_cols=47 Identities=26% Similarity=0.600 Sum_probs=33.7
Q ss_pred CCCCcccccccccccCCCceEEcCCCCcccChHHHHHHHh-----------cCCCCcccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR-----------SHSSCPKCRRC 172 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~-----------~~~~CP~CR~~ 172 (218)
.+.++.|.+|-+. |+ +..-..|-..||..||++=+. ..-.||.|+..
T Consensus 60 Dg~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4567899999863 33 444455999999999997652 12359999754
No 104
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.78 E-value=0.38 Score=33.19 Aligned_cols=51 Identities=20% Similarity=0.512 Sum_probs=35.0
Q ss_pred CCcccccccccccC-CCceEEcCCCCcccChHHHHHHHhc--------CCCCcccccccc
Q 027813 124 LDTECVICLSNFLP-GERVRMLPICNHGFHVRCIDKWLRS--------HSSCPKCRRCLI 174 (218)
Q Consensus 124 ~~~~CaICle~f~~-~~~vr~lp~C~H~FH~~CI~~Wl~~--------~~~CP~CR~~l~ 174 (218)
.+..|.||...-.. +..+..-..|...||..|+++=|.. .-.|+.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 34689999976432 2345555569999999999876531 235999966544
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=78.97 E-value=2.9 Score=29.77 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=23.6
Q ss_pred Ccccccccccc-----cCCCceEEcCCCCcccChHHHHH
Q 027813 125 DTECVICLSNF-----LPGERVRMLPICNHGFHVRCIDK 158 (218)
Q Consensus 125 ~~~CaICle~f-----~~~~~vr~lp~C~H~FH~~CI~~ 158 (218)
...|.+|+..= ..++.+..-..|+..||..|++.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcC
Confidence 46899999763 12234444445999999999963
No 106
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=78.06 E-value=0.42 Score=37.70 Aligned_cols=44 Identities=32% Similarity=0.598 Sum_probs=30.5
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcC----CCCcccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH----SSCPKCRRC 172 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~~CP~CR~~ 172 (218)
++.|.+|.+. |+.+ .-..|...||..|+++=+... -.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll-~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCC-CCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Ccee-ECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4689999854 4433 334489999999997655332 259999765
No 107
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=77.95 E-value=1.7 Score=31.07 Aligned_cols=47 Identities=21% Similarity=0.461 Sum_probs=30.5
Q ss_pred CCCCcccccccccccCCCceEEcC--CCCcccChHHHHHHHhcCC----CCcccccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLP--ICNHGFHVRCIDKWLRSHS----SCPKCRRCLI 174 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp--~C~H~FH~~CI~~Wl~~~~----~CP~CR~~l~ 174 (218)
..+++.|.+|.+ +..+..-. .|...||..|+. |.... .||.|+-.+-
T Consensus 12 ~~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 12 QMHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp CSSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 356678999983 23344433 488999999998 54322 4887754443
No 108
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=76.38 E-value=1.6 Score=30.97 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=34.5
Q ss_pred cccccccccccCCCceEEcC-CCCcccChHHHHHHH-----h-----cCCCCccccccc
Q 027813 126 TECVICLSNFLPGERVRMLP-ICNHGFHVRCIDKWL-----R-----SHSSCPKCRRCL 173 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp-~C~H~FH~~CI~~Wl-----~-----~~~~CP~CR~~l 173 (218)
..|.||...|.++...+.-- .|.--||..|+.-=- . .+..||.|+..-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 57999999997766555553 589999999975321 0 344699997653
No 109
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=75.94 E-value=0.95 Score=30.29 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=31.6
Q ss_pred CCcccccccccccCCCceEEcC--CCCcccChHHHHHHHh---------cCCCCcccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLP--ICNHGFHVRCIDKWLR---------SHSSCPKCRRCLI 174 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp--~C~H~FH~~CI~~Wl~---------~~~~CP~CR~~l~ 174 (218)
....| ||-.....+..| .-- .|..-||..|+.---. .+..||.|+..-.
T Consensus 15 ~~~~C-iC~~~~~~g~MI-~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMI-QCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCC-SSCCCCCCSCEE-ECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCEEe-ECCCcCCCCCEE-EECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 44678 898875444333 333 5999999999864221 2456999976543
No 110
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.70 E-value=3.3 Score=26.77 Aligned_cols=43 Identities=23% Similarity=0.542 Sum_probs=31.5
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
....|+-|-+.+..++.+... -+..||.+| ..|-.|+..|...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCCC
Confidence 446899999998765654332 578999988 4578888777654
No 111
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=74.99 E-value=3.8 Score=30.25 Aligned_cols=49 Identities=22% Similarity=0.512 Sum_probs=34.0
Q ss_pred CCCCcccccccccccCCCceEEcCCCCcccChHHHHHHH------hc-----CCCCcccccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWL------RS-----HSSCPKCRRCLI 174 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl------~~-----~~~CP~CR~~l~ 174 (218)
++.++.|.||-+- .++..-..|-..||..||++=+ +. .=.|++|+..-.
T Consensus 54 Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 54 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp TSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred CCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 4566789999853 4454545589999999999752 21 235999976543
No 112
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=73.63 E-value=3.7 Score=27.71 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=27.2
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHH
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKW 159 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~W 159 (218)
.....|.+|-..|..-..-.--..||++|+..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3456899999999765433334459999999997654
No 113
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=73.33 E-value=1.6 Score=29.94 Aligned_cols=51 Identities=20% Similarity=0.412 Sum_probs=33.7
Q ss_pred CCCcccccccccc-cCCCceEEcCCCCcccChHHHHHHHh--cCCCCccccccc
Q 027813 123 GLDTECVICLSNF-LPGERVRMLPICNHGFHVRCIDKWLR--SHSSCPKCRRCL 173 (218)
Q Consensus 123 ~~~~~CaICle~f-~~~~~vr~lp~C~H~FH~~CI~~Wl~--~~~~CP~CR~~l 173 (218)
+++..|.||.+.- ..++.+..-..|.-.||..|+..-+. ..-.||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 4567999998753 22334555556899999999986431 122599996543
No 114
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=72.91 E-value=0.42 Score=32.20 Aligned_cols=44 Identities=32% Similarity=0.701 Sum_probs=28.1
Q ss_pred ccccccccccCCCceEEcCCCCcccChHHHHHHHhcC-----CCCccccc
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH-----SSCPKCRR 171 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-----~~CP~CR~ 171 (218)
.|.||-..- +.+.+..-..|...||..|+++-|... =.||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466666543 223444445589999999999765431 35998875
No 115
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=72.66 E-value=2.4 Score=27.87 Aligned_cols=45 Identities=29% Similarity=0.623 Sum_probs=28.3
Q ss_pred CCCcccccccccccCCCceEEcCC--CC-cccChHHHHHHHhc----CCCCcccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPI--CN-HGFHVRCIDKWLRS----HSSCPKCRRC 172 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~----~~~CP~CR~~ 172 (218)
.+...| ||-.... ++ ++.--. |. .-||..|+. |.. +-.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 345678 8987642 33 333344 54 689999998 433 2359999654
No 116
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=72.59 E-value=4.1 Score=26.72 Aligned_cols=50 Identities=20% Similarity=0.417 Sum_probs=33.1
Q ss_pred CCCCcccccccccc-cCCCceEEcCCCCcccChHHHHHHHh--cCCCCccccc
Q 027813 122 PGLDTECVICLSNF-LPGERVRMLPICNHGFHVRCIDKWLR--SHSSCPKCRR 171 (218)
Q Consensus 122 ~~~~~~CaICle~f-~~~~~vr~lp~C~H~FH~~CI~~Wl~--~~~~CP~CR~ 171 (218)
..++..|.||.+.- ..++.+..-..|.-.||..|+..-.. ..=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34567899998754 23345555556999999999885321 1224888854
No 117
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=72.27 E-value=0.83 Score=29.84 Aligned_cols=47 Identities=23% Similarity=0.480 Sum_probs=31.0
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHh---cCCCCccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR---SHSSCPKCRR 171 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~~CP~CR~ 171 (218)
.+...| ||-..+. ++..+.-..|..-||..|+..--. ....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344678 9988765 443444445999999999864321 2346998864
No 118
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=71.32 E-value=3.4 Score=29.54 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=23.7
Q ss_pred cccccccccccC------CCceEEcCCCCcccChHHHHHH
Q 027813 126 TECVICLSNFLP------GERVRMLPICNHGFHVRCIDKW 159 (218)
Q Consensus 126 ~~CaICle~f~~------~~~vr~lp~C~H~FH~~CI~~W 159 (218)
+.|.||+..-.. ++.+..-..|+..||..|++.+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 479999875421 2344444459999999999865
No 119
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.74 E-value=0.76 Score=30.85 Aligned_cols=45 Identities=22% Similarity=0.565 Sum_probs=29.9
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhc-----CCCCccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS-----HSSCPKCRR 171 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~-----~~~CP~CR~ 171 (218)
..|.||...-. ++.+..-..|...||..|+++=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 47889986433 3344454559999999999864432 225888864
No 120
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.10 E-value=5.2 Score=25.83 Aligned_cols=41 Identities=22% Similarity=0.567 Sum_probs=31.5
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
....|+.|-+.+..++.+.. -+..||.+| ..|-.|+..|..
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCC
Confidence 34689999999987776543 678999988 458888887764
No 121
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.17 E-value=6.2 Score=26.00 Aligned_cols=40 Identities=23% Similarity=0.535 Sum_probs=30.9
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
....|+-|-+.+..++.+.. -+..||.+| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 34689999999887776554 578999988 55888887775
No 122
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=67.85 E-value=4.7 Score=39.34 Aligned_cols=50 Identities=18% Similarity=0.040 Sum_probs=41.4
Q ss_pred CCCcccccccccccCCCceEEcCCCC-cccChHHHHHHHhcCCCCcccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICN-HGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~-H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
...-.|+|-++-+.+ ..++| -| +.|-..+|.+||.++.+||.=|.+|...
T Consensus 889 P~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred cHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 345689999998866 56788 76 6899999999999999999998888643
No 123
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.64 E-value=3.7 Score=26.13 Aligned_cols=41 Identities=22% Similarity=0.571 Sum_probs=29.7
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
..|+.|-+.+..++.+... -+..||.+| ..|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCCC
Confidence 5899999998876544332 578999888 4578887777543
No 124
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=67.61 E-value=1.6 Score=27.63 Aligned_cols=43 Identities=30% Similarity=0.631 Sum_probs=27.5
Q ss_pred CCcccccccccccCCCceEEcCC--CC-cccChHHHHHHHhc----CCCCccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPI--CN-HGFHVRCIDKWLRS----HSSCPKCRR 171 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~----~~~CP~CR~ 171 (218)
+...| ||-... .+ .+..-.. |. .-||..|+. |.. +-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44567 898764 23 3444444 55 699999998 433 235999964
No 125
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.59 E-value=2.8 Score=29.04 Aligned_cols=45 Identities=29% Similarity=0.623 Sum_probs=28.0
Q ss_pred CCCcccccccccccCCCceEEcCC--CC-cccChHHHHHHHhc----CCCCcccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPI--CN-HGFHVRCIDKWLRS----HSSCPKCRRC 172 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~----~~~CP~CR~~ 172 (218)
.+...| ||-.... ++ ++.-.. |. .-||..|+. |.. +-.||.|+..
T Consensus 34 ~e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 344567 9987653 33 323333 44 579999998 433 3369999754
No 126
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=66.28 E-value=4.3 Score=27.22 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=26.7
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHH
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKW 159 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~W 159 (218)
.+...|.+|...|..-..-.--..||.+|+..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3446899999999764333334459999999997654
No 127
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=65.73 E-value=0.94 Score=29.75 Aligned_cols=44 Identities=32% Similarity=0.719 Sum_probs=28.2
Q ss_pred ccccccccccCCCceEEcCCCCcccChHHHHHHHhc-----CCCCccccc
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS-----HSSCPKCRR 171 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~-----~~~CP~CR~ 171 (218)
.|.||...- .++.+..-..|...||..|+++=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466776542 23345455558999999999864432 225888864
No 128
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.53 E-value=4.2 Score=25.89 Aligned_cols=41 Identities=24% Similarity=0.530 Sum_probs=29.5
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
...|+-|-+.+..++.+. .. -+..||.+| ..|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a-~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL-EY-GGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE-CS-TTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEE-EE-CccccCccc--------CeECCCCCcCCC
Confidence 358999999987754432 22 688999988 457888777654
No 129
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=64.77 E-value=5.2 Score=27.38 Aligned_cols=50 Identities=18% Similarity=0.392 Sum_probs=33.3
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhc------CCCCcccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS------HSSCPKCRRCLI 174 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~------~~~CP~CR~~l~ 174 (218)
...|.+|...|..-..-..-..||++|+..|...+... ...|-.|-..|.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 46899999999754433344559999999997765421 234777754443
No 130
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=64.65 E-value=6 Score=26.99 Aligned_cols=53 Identities=19% Similarity=0.427 Sum_probs=34.9
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHh-------cCCCCccccccccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR-------SHSSCPKCRRCLIE 175 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~-------~~~~CP~CR~~l~~ 175 (218)
.....|.+|...|..-..-.--..||++|+..|....+. ....|-.|-..+..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 344689999999976543333445999999999765431 12347777555543
No 131
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=64.53 E-value=0.73 Score=29.99 Aligned_cols=46 Identities=22% Similarity=0.408 Sum_probs=27.8
Q ss_pred CcccccccccccCCCceEEc-CCCCcccChHHHHHHH---h-----cCCCCccccc
Q 027813 125 DTECVICLSNFLPGERVRML-PICNHGFHVRCIDKWL---R-----SHSSCPKCRR 171 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~l-p~C~H~FH~~CI~~Wl---~-----~~~~CP~CR~ 171 (218)
...| ||-.....+..|.-- ..|..-||..|+.--- . .+..||.||.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3457 797665555433321 1388999999974211 0 1356999975
No 132
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=64.52 E-value=4.9 Score=26.30 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=24.2
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHH
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDK 158 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~ 158 (218)
..|.+|...|..-..-.--..||++|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 589999999976433333345999999999653
No 133
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=64.28 E-value=1 Score=32.04 Aligned_cols=45 Identities=24% Similarity=0.660 Sum_probs=29.3
Q ss_pred ccccccccccCCCceEEcCCCCcccChHHHHHHHhc----CCCCcccccc
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS----HSSCPKCRRC 172 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~ 172 (218)
.|.+|-..-.. +.+..-..|...||..|+++=+.. .-.||.|+..
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57778765333 334444559999999999865533 2258888543
No 134
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=64.14 E-value=6.4 Score=24.78 Aligned_cols=42 Identities=24% Similarity=0.594 Sum_probs=31.9
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
...|+-|-+.+..++.+... =+..||.+|+ .|-.|...|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 46899999998877765332 6788999985 588888887654
No 135
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.95 E-value=6.5 Score=25.97 Aligned_cols=42 Identities=26% Similarity=0.516 Sum_probs=31.7
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
....|+.|-+.+...+.+.. -+..||.+| ..|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCCC
Confidence 44689999999877666542 678999999 4588888877654
No 136
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=63.66 E-value=1.1 Score=32.78 Aligned_cols=48 Identities=21% Similarity=0.465 Sum_probs=31.5
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRC 172 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~ 172 (218)
...|..|-..|..-..-..-..||.+|+..|..........|-.|-..
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 358999999996533333345599999999977665556668877543
No 137
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.37 E-value=6.8 Score=24.87 Aligned_cols=40 Identities=25% Similarity=0.483 Sum_probs=27.6
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
...|+.|-+.+...+.+.. . -+..||.+| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVV-A-LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEE-C-SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEE-E-CCCeEcccC--------CcccccCCcCC
Confidence 3579999888766443322 2 578899888 45778877774
No 138
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=63.27 E-value=0.71 Score=33.26 Aligned_cols=47 Identities=21% Similarity=0.548 Sum_probs=31.0
Q ss_pred ccccccccccCCCceEEcCCCCcccChHHHHHHHhcC----CCCcccccccc
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSH----SSCPKCRRCLI 174 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~~CP~CR~~l~ 174 (218)
.|.||...-..+ .+..-..|...||..|+++=|... -.||.|+..+-
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 688887754333 344444599999999998644332 24999966543
No 139
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=63.12 E-value=4.1 Score=29.74 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=25.3
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHH
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDK 158 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~ 158 (218)
....|.+|-..|..-..-..-..||++|+..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34689999999975433333445999999999554
No 140
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=62.99 E-value=1.8 Score=35.16 Aligned_cols=45 Identities=33% Similarity=0.743 Sum_probs=26.3
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhc-----CCCCccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS-----HSSCPKCRR 171 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~-----~~~CP~CR~ 171 (218)
..|.+|-..=.. +.+..-..|...||..|+++=|.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 358888764323 334444559999999999964432 225999965
No 141
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.97 E-value=7.2 Score=24.78 Aligned_cols=40 Identities=23% Similarity=0.508 Sum_probs=29.1
Q ss_pred CcccccccccccC--CCceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 125 DTECVICLSNFLP--GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 125 ~~~CaICle~f~~--~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
...|+-|-+.+.. ++.+.. . -+..||.+| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~-a-~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS-F-EERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE-C-SSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEE-E-CCcccCccc--------CEeccCCCcCC
Confidence 3589999998875 333332 2 688999988 46888888775
No 142
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.83 E-value=5.9 Score=25.89 Aligned_cols=42 Identities=17% Similarity=0.520 Sum_probs=31.0
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
...|+.|-+.+..++.+... -+..||.+| .+|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEE--Ccccccccc--------CchhhCCCccCCC
Confidence 36899999998876664332 578999888 4588888777643
No 143
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=62.73 E-value=3.5 Score=26.69 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=13.4
Q ss_pred ccccccccccCCCceEEcCCCCcccChHH
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGFHVRC 155 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~FH~~C 155 (218)
.|+.|-+.+..++.+.. -+..||.+|
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~C 27 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPC 27 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTT
T ss_pred cCCCCCCEEECceEEEE---CCccccCCC
Confidence 35666655554443322 355666665
No 144
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=62.59 E-value=2.1 Score=27.07 Aligned_cols=43 Identities=28% Similarity=0.623 Sum_probs=26.7
Q ss_pred CCcccccccccccCCCceEEcCC--CC-cccChHHHHHHHhc----CCCCccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPI--CN-HGFHVRCIDKWLRS----HSSCPKCRR 171 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~----~~~CP~CR~ 171 (218)
+...| ||-... .+ .+..-.. |. ..||..|+. |.. +-.||.|+.
T Consensus 9 e~~~C-~C~~~~-~g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS-YG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC-CC-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34567 898764 23 3444344 44 679999998 433 235999864
No 145
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=62.29 E-value=6.5 Score=26.29 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=28.9
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
....|+-|-+.+.. ..+ .. -+..||.+| ..|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVV--KA-RDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CCE--ES-SSCEECTTT--------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cEE--EE-CCceECccC--------CEecCCCCCCCC
Confidence 34689999988874 322 22 778999998 458888877764
No 146
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.05 E-value=5.7 Score=26.70 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=25.1
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHH
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDK 158 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~ 158 (218)
.....|.+|...|..-..-.--..||.+|+..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 344689999999965432233344999999999543
No 147
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=60.06 E-value=22 Score=21.02 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027813 52 VVAVLSFLICSLICSLGFHFLLKC 75 (218)
Q Consensus 52 viiil~ill~~li~~l~l~~i~r~ 75 (218)
..-++..++.++++++.+++++|.
T Consensus 13 A~gVVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 13 AAGVIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeehHHHHHHHHHHHHHHHHhhh
Confidence 333333333333444444444444
No 148
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=59.87 E-value=3.6 Score=26.11 Aligned_cols=42 Identities=31% Similarity=0.691 Sum_probs=29.3
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHH-hcCCCCccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWL-RSHSSCPKC 169 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl-~~~~~CP~C 169 (218)
..|--|...|.+.. .-.-+.|++.|+.+| |..+ ..-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 46999999985432 233566999999999 4433 334579988
No 149
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=58.91 E-value=5 Score=31.98 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=25.6
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHH
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKW 159 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~W 159 (218)
+..|.+|...|..-..-.--..||++|+..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 47999999999754333334459999999996543
No 150
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=58.38 E-value=24 Score=23.25 Aligned_cols=7 Identities=29% Similarity=0.894 Sum_probs=3.5
Q ss_pred Hhhcccc
Q 027813 77 FIRCSRL 83 (218)
Q Consensus 77 ~~R~~~~ 83 (218)
|+|.+|.
T Consensus 37 ylrlqri 43 (90)
T 1zza_A 37 YLRLQRI 43 (90)
T ss_dssp TTSSCSS
T ss_pred HHHHHHH
Confidence 3565554
No 151
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.61 E-value=8.6 Score=24.77 Aligned_cols=40 Identities=25% Similarity=0.586 Sum_probs=28.5
Q ss_pred CcccccccccccC--CCceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 125 DTECVICLSNFLP--GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 125 ~~~CaICle~f~~--~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
...|+.|-+.+.. ++.+.. . -+..||.+| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~-a-~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFIC-F-QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEE-E-TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEE-E-CCcccCccc--------CChhhCCCcCC
Confidence 3589999998875 333322 2 678999999 45888887775
No 152
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=57.45 E-value=4 Score=26.77 Aligned_cols=41 Identities=29% Similarity=0.561 Sum_probs=29.1
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
...|+.|-+.+..++.++. -+..||.+|+ .|-.|+..|...
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSSE--------ECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeEEe---CCcccccccC--------ccCCCCCCCCCC
Confidence 4689999999877765433 6789998884 477777766543
No 153
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=56.18 E-value=7 Score=28.93 Aligned_cols=49 Identities=14% Similarity=0.295 Sum_probs=30.6
Q ss_pred CCCccccccccccc-CCCceEEcCCCCcccChHHHHHHHh-cCC---CCccccc
Q 027813 123 GLDTECVICLSNFL-PGERVRMLPICNHGFHVRCIDKWLR-SHS---SCPKCRR 171 (218)
Q Consensus 123 ~~~~~CaICle~f~-~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~---~CP~CR~ 171 (218)
.++..|++|...|. .+..-++-..|+|.++..|=..--. .+. .|-+|+.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 45689999999994 2222344445999999998443111 111 2888855
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=55.99 E-value=5.8 Score=31.84 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=26.0
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHH
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKW 159 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~W 159 (218)
+..|.+|...|..-..-..-..||++|+..|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 46899999999764333344559999999996654
No 155
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=55.81 E-value=2.6 Score=22.87 Aligned_cols=28 Identities=25% Similarity=0.524 Sum_probs=20.0
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHH
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCI 156 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI 156 (218)
+.|+.|-..+-..+.+. - -|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~-~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--C-LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--S-SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--E-CCeEecccCC
Confidence 47899988876655443 2 6789999884
No 156
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=55.56 E-value=2.8 Score=27.61 Aligned_cols=46 Identities=20% Similarity=0.454 Sum_probs=31.2
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHh-----cCCCCcccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR-----SHSSCPKCRRC 172 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~~CP~CR~~ 172 (218)
..| ||-..+..+...+.-..|.--||..|+.---. ....||.|+..
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 345 89887765545555555999999999964321 23569999754
No 157
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=55.36 E-value=5.9 Score=28.34 Aligned_cols=29 Identities=17% Similarity=0.408 Sum_probs=15.7
Q ss_pred ccccccccccCCCceEEcCCCCcccChHHHH
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGFHVRCID 157 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~FH~~CI~ 157 (218)
.|+.|-..+..++.+. ..-++.||.+|+.
T Consensus 10 ~C~~C~~~I~~~e~~~--~a~~~~~H~~CF~ 38 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTM--RVKDKVYHLECFK 38 (123)
T ss_dssp CCSSSSCCCCTTCCCC--CCSSCCCCTTTCB
T ss_pred cccCCCCeecCCceEE--EECCcccccccCc
Confidence 5777766665544331 1145666666643
No 158
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=54.61 E-value=13 Score=32.35 Aligned_cols=46 Identities=17% Similarity=0.324 Sum_probs=28.7
Q ss_pred cccccccccccCCCceEEcCCCCcc--cChHHHHHHHhcC--CCCcccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHG--FHVRCIDKWLRSH--SSCPKCRRCLI 174 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~--FH~~CI~~Wl~~~--~~CP~CR~~l~ 174 (218)
..|++=...+. ..+|-.. |.|. |-..=+.....+. -.||+|...+.
T Consensus 250 L~CPlS~~ri~--~PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMK--YPSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCS--SEEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCcccccc--ccCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 56887776653 3577777 9998 4433333322232 35999988764
No 159
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=54.37 E-value=2.1 Score=26.13 Aligned_cols=42 Identities=24% Similarity=0.521 Sum_probs=26.6
Q ss_pred cccccccCCCceEEcCCCCcccChHHHHHHHh---cCCCCcccccc
Q 027813 130 ICLSNFLPGERVRMLPICNHGFHVRCIDKWLR---SHSSCPKCRRC 172 (218)
Q Consensus 130 ICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~~CP~CR~~ 172 (218)
||-.... +...+.-..|+.-||..|+.---. .+..||.|+.+
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~S 52 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 52 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHTC
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCCc
Confidence 6766654 333444444999999999864321 24469998753
No 160
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.23 E-value=13 Score=23.30 Aligned_cols=40 Identities=23% Similarity=0.661 Sum_probs=28.2
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
...|+-|-+.+. ++.+.. -+..||.+|+ .|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~-~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFII-GRVIKA---MNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCC-SCCEEE---TTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEec-ceEEEE---CcccccccCC--------EeCCCCCcCCCC
Confidence 468999998876 333332 5789999884 578887776643
No 161
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=54.10 E-value=14 Score=23.90 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=25.6
Q ss_pred CCCcccccccccccCCCceEEcCCC-CcccChHHHHHH
Q 027813 123 GLDTECVICLSNFLPGERVRMLPIC-NHGFHVRCIDKW 159 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C-~H~FH~~CI~~W 159 (218)
++..-|.||.++ ..+|-+. | +-+|+..|..+-
T Consensus 6 ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 445689999987 4588888 9 899999997763
No 162
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.95 E-value=8.8 Score=25.72 Aligned_cols=40 Identities=30% Similarity=0.651 Sum_probs=29.1
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
...|+-|-+.+...+.++ . -+..||.+|+ .|-.|...|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISCF--------RCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTTC--------BCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCCC--------eeCCCCCCCCC
Confidence 468999999988766543 3 6889999884 46677666654
No 163
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.86 E-value=11 Score=24.52 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=29.3
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
....|+-|-+.+. ++.+ ..-+..||.+| .+|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~-~~~v---~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPL---IFKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCC-SCCC---CCSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCCccCCCEec-ceEE---EECcceeCCCC--------CEeCCCCCccCCC
Confidence 3468999998887 3333 22688999888 4688888877644
No 164
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=52.18 E-value=15 Score=31.82 Aligned_cols=46 Identities=17% Similarity=0.301 Sum_probs=29.4
Q ss_pred cccccccccccCCCceEEcCCCCcc--cChHHHHHHHhcC--CCCcccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHG--FHVRCIDKWLRSH--SSCPKCRRCLI 174 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~--FH~~CI~~Wl~~~--~~CP~CR~~l~ 174 (218)
..|++=...+. ..+|-.. |.|. |-..=+-....+. -.||+|.+.+.
T Consensus 216 L~CPlS~~ri~--~P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLT--IPCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCS--SEEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceec--cCCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 46887776653 3577777 9998 5544333333333 35999988764
No 165
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=52.11 E-value=4.4 Score=25.78 Aligned_cols=43 Identities=33% Similarity=0.610 Sum_probs=27.1
Q ss_pred CCcccccccccccCCCceEEcCC--CC-cccChHHHHHHHhc----CCCCccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPI--CN-HGFHVRCIDKWLRS----HSSCPKCRR 171 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~----~~~CP~CR~ 171 (218)
+...| ||-... .+ .++.-.. |. .-||..|+. |.. +-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34567 898763 33 3444444 44 799999998 322 335999964
No 166
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=50.68 E-value=3.3 Score=36.14 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=0.0
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhc-------CCCCccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS-------HSSCPKCRRCL 173 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~-------~~~CP~CR~~l 173 (218)
....|.+|-..|..-..-..-..||++||..|-..++.. ...|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 346899999998653222223349999999998876521 23466665443
No 167
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=49.44 E-value=29 Score=23.86 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=33.6
Q ss_pred CCcccccccccccCCC--ceEE-cCCCCcccChHHHHHHHh-cCCCCcccccccc
Q 027813 124 LDTECVICLSNFLPGE--RVRM-LPICNHGFHVRCIDKWLR-SHSSCPKCRRCLI 174 (218)
Q Consensus 124 ~~~~CaICle~f~~~~--~vr~-lp~C~H~FH~~CI~~Wl~-~~~~CP~CR~~l~ 174 (218)
....|.||=+++-... .+-+ --.|+--.+..|.+-=.+ .++.||-|+..+-
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3469999999864322 1211 112666778889876554 3778999988775
No 168
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=49.15 E-value=3 Score=29.70 Aligned_cols=25 Identities=36% Similarity=0.716 Sum_probs=16.6
Q ss_pred CCcccChHHHHHHHhcCCCCcccccccccc
Q 027813 147 CNHGFHVRCIDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 147 C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (218)
||+.|. .=+.....||.|+..-++.
T Consensus 73 CG~~F~-----~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 73 CGFVFK-----AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp TCCBCC-----CCSSCCSSCSSSCCCCBCC
T ss_pred CcCeec-----ccCCCCCCCcCCCCCccCC
Confidence 999981 1123346799998876655
No 169
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.76 E-value=17 Score=24.21 Aligned_cols=40 Identities=15% Similarity=0.355 Sum_probs=29.1
Q ss_pred CCcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 124 LDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 124 ~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
....|+-|-+.+. ++.+. . -+..||.+| ..|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLV--A-LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEE--E-TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEEE--E-CCccccccC--------CccCCCCCCCCC
Confidence 3468999999884 34333 2 689999998 468888887764
No 170
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=47.37 E-value=12 Score=26.85 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=30.1
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
...|+-|-+.+.....+.. -+..||.+| ..|-.|+..|.+
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 100 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLGD 100 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCcccc
Confidence 3689999998875433332 688999998 568899888863
No 171
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=46.00 E-value=18 Score=27.62 Aligned_cols=35 Identities=34% Similarity=0.711 Sum_probs=26.5
Q ss_pred CCCCcccccccccccCCCceEEcC--CCCcccChHHHHHHH
Q 027813 122 PGLDTECVICLSNFLPGERVRMLP--ICNHGFHVRCIDKWL 160 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp--~C~H~FH~~CI~~Wl 160 (218)
++.+..|.||-+ |..+..-. .|...|+..||+.++
T Consensus 76 DG~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nv 112 (159)
T 3a1b_A 76 DGYQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLV 112 (159)
T ss_dssp TSSBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHT
T ss_pred CCCcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhc
Confidence 456678999985 34554443 488999999999997
No 172
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=45.81 E-value=37 Score=22.87 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=29.4
Q ss_pred CCCcccccccccccCCCceEEcCCCCcccChHHHHHHHhc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRS 162 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~ 162 (218)
.....|.+|.+.+++..-|.--..=+|.|+-.|-...+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 3446899999999886555321112799999999999865
No 173
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=45.57 E-value=5.3 Score=36.01 Aligned_cols=48 Identities=21% Similarity=0.434 Sum_probs=32.6
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHh-----cCCCCccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR-----SHSSCPKCRRCL 173 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~~CP~CR~~l 173 (218)
...| ||-..+..+...+.-..|.--||..|+.---. .+..||.|+...
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 3456 99988764555555555999999999854321 234699997643
No 174
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.56 E-value=15 Score=23.82 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=28.5
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
...|+-|-+.+.. +.+ .- -+..||.+|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFV--KL-RDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCCS-SCE--EC-SSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCccccCCCCccC-cEE--EE-CcceeCcCcC--------eeCCCCCCCCC
Confidence 4689999988864 322 22 6899999994 58888887753
No 175
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=44.39 E-value=12 Score=28.13 Aligned_cols=39 Identities=31% Similarity=0.731 Sum_probs=26.8
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
..|+.|-+.+..++.+.. . -++.||.+|+ .|-.|...|.
T Consensus 66 ~~C~~C~~~I~~~~~v~~-a-~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVRR-A-QDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp CBCTTTCCBCCTTSEEEE-E-TTEEEEGGGC--------BCTTTCCBCC
T ss_pred ccccccccccCCCcEEEE-c-CCceEeeCCC--------cCCCCCCCCC
Confidence 478888877766554432 2 6788998884 5777777664
No 176
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.23 E-value=19 Score=23.28 Aligned_cols=38 Identities=29% Similarity=0.537 Sum_probs=27.5
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
..|+.|-+.+. ++.++. -+..||.+| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~-~~~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVSA---LGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEEE---TTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEec-cceEEE---CCceeCccC--------CccccCCCCCCC
Confidence 58999998887 343332 678999988 457788777754
No 177
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=43.87 E-value=17 Score=23.20 Aligned_cols=41 Identities=24% Similarity=0.472 Sum_probs=29.0
Q ss_pred CcccccccccccC---CCceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 125 DTECVICLSNFLP---GERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 125 ~~~CaICle~f~~---~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
...|+-|-+.+.. ++.+.. . =+..||.+| ..|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVA-Y-EGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEE-E-TTEEEETTT--------CBCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEE-E-CcceeCccc--------CEehhcCCCCCC
Confidence 3689999998874 233322 2 578999988 468889888753
No 178
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=43.14 E-value=8.8 Score=27.34 Aligned_cols=29 Identities=24% Similarity=0.616 Sum_probs=18.9
Q ss_pred CCCcccChHHH---HH---HHhc-----CCCCcccccccc
Q 027813 146 ICNHGFHVRCI---DK---WLRS-----HSSCPKCRRCLI 174 (218)
Q Consensus 146 ~C~H~FH~~CI---~~---Wl~~-----~~~CP~CR~~l~ 174 (218)
.|++-||..|+ +. -+.. ...||.|.....
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~ 46 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHV 46 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSC
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCcccccccc
Confidence 39999999995 21 1222 356999965443
No 179
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=43.14 E-value=35 Score=22.69 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027813 56 LSFLICSLICSLGFHFLL 73 (218)
Q Consensus 56 l~ill~~li~~l~l~~i~ 73 (218)
+++++.++++.++++++.
T Consensus 15 ~gvi~gilliGllllliw 32 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIW 32 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 180
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.71 E-value=26 Score=21.80 Aligned_cols=38 Identities=21% Similarity=0.595 Sum_probs=27.4
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
...|+-|-+.+.. +.+.. -+..||.+|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGITY---QDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCEEE---TTEEECTTTT--------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceEEE---CccccccCcC--------EECCCCCCCC
Confidence 3579999988864 44432 5789998884 5888888775
No 181
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=41.42 E-value=10 Score=23.51 Aligned_cols=39 Identities=21% Similarity=0.429 Sum_probs=28.2
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
...|+.|-+.+. ++. +.. -+..||.+| ..|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~-~~~--~~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV--VNA-MGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCE--ECC-TTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceE--EEE-CccccccCc--------CEECCCCCCCCC
Confidence 358999999887 443 233 678999988 458888887753
No 182
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.06 E-value=16 Score=23.73 Aligned_cols=41 Identities=27% Similarity=0.537 Sum_probs=28.6
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
...|+.|-+.+..++.+ +..=+..||.+| ..|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~~--~~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRE--LFYEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCB--CCCSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEE--EEeCCccccccC--------CeecCCCCccCC
Confidence 35899999988744433 222578999888 457888877753
No 183
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=40.90 E-value=17 Score=27.84 Aligned_cols=28 Identities=21% Similarity=0.495 Sum_probs=20.9
Q ss_pred ccccccccccCCCceEEcCCCCcccChHHH
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGFHVRCI 156 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~FH~~CI 156 (218)
.|+.|-..+...+.+... -++.||.+|+
T Consensus 71 ~C~~C~~~I~~~e~~i~a--~~~~~H~~CF 98 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA--QGNVYHLKCF 98 (188)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEECGGGC
T ss_pred ccccCCCccccCcEEEEc--CCCEEeCCCC
Confidence 699999888766544332 6899999994
No 184
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=40.73 E-value=23 Score=23.89 Aligned_cols=10 Identities=30% Similarity=0.551 Sum_probs=4.8
Q ss_pred cccccccccc
Q 027813 127 ECVICLSNFL 136 (218)
Q Consensus 127 ~CaICle~f~ 136 (218)
.|+.|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (101)
T 2cup_A 7 GCVECRKPIG 16 (101)
T ss_dssp BCSSSCCBCC
T ss_pred cCcccCCccc
Confidence 4555554443
No 185
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.05 E-value=17 Score=23.22 Aligned_cols=37 Identities=19% Similarity=0.510 Sum_probs=25.7
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
..|+-|-..+.. +. +..-+..||.+| .+|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~-~~---v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RV---LEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CC---BCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-ee---EEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 578889887754 22 233678999888 45777777765
No 186
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=38.53 E-value=6.5 Score=25.68 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=15.1
Q ss_pred HHHHHhcCCCCcccccccccc
Q 027813 156 IDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 156 I~~Wl~~~~~CP~CR~~l~~~ 176 (218)
++.||..--.||.|+..|.-.
T Consensus 1 md~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 1 MDTKLLDILACPICKGPLKLS 21 (69)
T ss_dssp --CCGGGTCCCTTTCCCCEEC
T ss_pred CChHHHhheeCCCCCCcCeEe
Confidence 356777778899999987743
No 187
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=37.64 E-value=20 Score=25.50 Aligned_cols=38 Identities=18% Similarity=0.490 Sum_probs=22.2
Q ss_pred ccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
.|+.|-+.+...+.+... -++.||.+| ..|-.|...|.
T Consensus 68 ~C~~C~~~I~~~e~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 105 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRV--KDKVYHLEC--------FKCAACQKHFC 105 (131)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEEEGGG--------CBCTTTCCBCC
T ss_pred ChhhcCCccCccceeEee--CCceECccC--------cccCCCCCCCC
Confidence 577777666554433221 567777766 35666666653
No 188
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.63 E-value=21 Score=22.25 Aligned_cols=38 Identities=26% Similarity=0.562 Sum_probs=27.2
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
...|+.|-+.+.. +.+ .. -+..||.+| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GGV--TY-REQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCS-SEE--ES-SSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCCcccCCeecc-ceE--EE-CccccCCCC--------CccCCCCCcCC
Confidence 3579999988864 332 23 678999888 45888887775
No 189
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=37.30 E-value=18 Score=22.38 Aligned_cols=39 Identities=28% Similarity=0.634 Sum_probs=28.3
Q ss_pred cccccccccccCCCceEEcCCCCcccC--hHHHHHHHhcCCCCcccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFH--VRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH--~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
..|+-|-+.+..++..... -+..|| .+| .+|-.|+..|.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a--~~~~wH~~~~C--------F~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY--NNFSWHASTEC--------FLCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEEEE--TTEEEETTTTT--------SBCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEEEE--CCCccCCCCCC--------EECCCCCCcCC
Confidence 4799999988865333222 688999 988 46888888775
No 190
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=37.15 E-value=21 Score=26.89 Aligned_cols=47 Identities=21% Similarity=0.392 Sum_probs=30.8
Q ss_pred CCCcccccccccccC--CCceEEcCCCCcccChHHHHHHHhcCC--CCccccc
Q 027813 123 GLDTECVICLSNFLP--GERVRMLPICNHGFHVRCIDKWLRSHS--SCPKCRR 171 (218)
Q Consensus 123 ~~~~~CaICle~f~~--~~~vr~lp~C~H~FH~~CI~~Wl~~~~--~CP~CR~ 171 (218)
.++..|++|...|.- +....-.. |+|.++..|= .|..+.. .|-+|+.
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~-C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLE-CSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTT-TCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCC-CCchhhcccc-cccCCCCcEeeHHHHH
Confidence 356899999998743 33333334 9999999996 3443322 2888854
No 191
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=36.93 E-value=25 Score=30.68 Aligned_cols=47 Identities=23% Similarity=0.552 Sum_probs=32.6
Q ss_pred CCCCcccccccccccCCCceEEcC--CCCcccChHHHHHHHhc----------CCCCcccccc
Q 027813 122 PGLDTECVICLSNFLPGERVRMLP--ICNHGFHVRCIDKWLRS----------HSSCPKCRRC 172 (218)
Q Consensus 122 ~~~~~~CaICle~f~~~~~vr~lp--~C~H~FH~~CI~~Wl~~----------~~~CP~CR~~ 172 (218)
++.+..|.+|-+. ..+..-. .|...|+..||+.++-. .=.|=+|.-.
T Consensus 90 DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 90 DGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 4566789999863 3344443 58999999999999821 2358888543
No 192
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.56 E-value=18 Score=23.36 Aligned_cols=38 Identities=18% Similarity=0.420 Sum_probs=27.3
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
..|+.|-+.+. +..+ ..-+..||.+| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~-~~~~---~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFM---VAGEFKYHPEC--------FACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SCCB---CCTTCCBCTTS--------CBCTTTCCBCCT
T ss_pred CcCccCCCCcC-ceEE---EECCceecccc--------CCccCCCCccCC
Confidence 57999998887 3332 22678999888 458888888754
No 193
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=36.49 E-value=7.4 Score=20.81 Aligned_cols=12 Identities=33% Similarity=0.758 Sum_probs=8.4
Q ss_pred CCCccccccccc
Q 027813 164 SSCPKCRRCLIE 175 (218)
Q Consensus 164 ~~CP~CR~~l~~ 175 (218)
..||+|+..+..
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 468888876654
No 194
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=36.24 E-value=15 Score=25.81 Aligned_cols=13 Identities=38% Similarity=1.160 Sum_probs=11.1
Q ss_pred ccChHHHHHHHhc
Q 027813 150 GFHVRCIDKWLRS 162 (218)
Q Consensus 150 ~FH~~CI~~Wl~~ 162 (218)
.||..|+..|++.
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999853
No 195
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=35.79 E-value=15 Score=25.70 Aligned_cols=12 Identities=42% Similarity=1.049 Sum_probs=10.7
Q ss_pred ccChHHHHHHHh
Q 027813 150 GFHVRCIDKWLR 161 (218)
Q Consensus 150 ~FH~~CI~~Wl~ 161 (218)
.||..|+..|++
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999985
No 196
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=35.71 E-value=60 Score=18.86 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027813 55 VLSFLICSLICSLGFHFLLKC 75 (218)
Q Consensus 55 il~ill~~li~~l~l~~i~r~ 75 (218)
+++++..++++-+++.++.+.
T Consensus 13 v~gvi~~ivliGl~lLliwk~ 33 (43)
T 2k9j_B 13 LLSVMGAILLIGLAALLIWKL 33 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 197
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.67 E-value=30 Score=22.27 Aligned_cols=38 Identities=26% Similarity=0.597 Sum_probs=27.8
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
...|+-|-+.+.. ..++ . -+..||.+| .+|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~~~~--a-~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILD-RILR--A-MGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCS-CCEE--E-TTEEECTTT--------CBCSSSCCBCT
T ss_pred CCccccCCCeecc-eeEE--E-CCccccHHh--------cCcccCCCccC
Confidence 4689999988863 3332 2 678999988 45888988775
No 198
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=33.42 E-value=17 Score=27.70 Aligned_cols=11 Identities=18% Similarity=0.459 Sum_probs=4.9
Q ss_pred ccccccccccc
Q 027813 126 TECVICLSNFL 136 (218)
Q Consensus 126 ~~CaICle~f~ 136 (218)
..|..|-..+.
T Consensus 88 F~C~~C~~~L~ 98 (182)
T 2jtn_A 88 LKCSDCHVPLA 98 (182)
T ss_dssp TSCTTTCCCCS
T ss_pred CccCCCCCccC
Confidence 34444444443
No 199
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=33.12 E-value=6.8 Score=25.45 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=16.1
Q ss_pred HHHHHhcCCCCcccccccccc
Q 027813 156 IDKWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 156 I~~Wl~~~~~CP~CR~~l~~~ 176 (218)
++.||..--.||+|+.+|.-.
T Consensus 3 md~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCEEE
T ss_pred CCHHHHHHhCCCCCCCcCeEe
Confidence 356777778899999987654
No 200
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=33.06 E-value=11 Score=25.83 Aligned_cols=46 Identities=20% Similarity=0.389 Sum_probs=27.2
Q ss_pred CCCcccccccccccCCCceEEcCCCC---cccChHHHHHHH--hcCCCCcc-ccc
Q 027813 123 GLDTECVICLSNFLPGERVRMLPICN---HGFHVRCIDKWL--RSHSSCPK-CRR 171 (218)
Q Consensus 123 ~~~~~CaICle~f~~~~~vr~lp~C~---H~FH~~CI~~Wl--~~~~~CP~-CR~ 171 (218)
.+...| ||-.... ++ ++.-..|. .-||..|+..=- ..+-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 344578 9987532 33 43334455 689999986210 12346999 863
No 201
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.37 E-value=28 Score=24.29 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=5.4
Q ss_pred CcccChHHHHH
Q 027813 148 NHGFHVRCIDK 158 (218)
Q Consensus 148 ~H~FH~~CI~~ 158 (218)
+..|+..|...
T Consensus 52 g~~yC~~~y~~ 62 (114)
T 1j2o_A 52 GRKLCRRDYLR 62 (114)
T ss_dssp TBCCCHHHHHH
T ss_pred CeeechHHHHH
Confidence 44555555444
No 202
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=32.16 E-value=55 Score=21.49 Aligned_cols=30 Identities=17% Similarity=0.480 Sum_probs=17.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 027813 44 AKSCLHSNVVAVLSFLICSLICSLGFHFLL 73 (218)
Q Consensus 44 ~~~~f~~~viiil~ill~~li~~l~l~~i~ 73 (218)
++..++...+=+.+.++.+++++++++++.
T Consensus 10 dpF~YDY~tLRigGLifA~vLfi~GI~iil 39 (74)
T 2zxe_G 10 ERFTYDYYRLRVVGLIVAAVLCVIGIIILL 39 (74)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccchHHheeccchhHHHHHHHHHHHHH
Confidence 334445555556666666666666666553
No 203
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=31.99 E-value=28 Score=26.70 Aligned_cols=39 Identities=26% Similarity=0.568 Sum_probs=28.5
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
...|+.|-+.+..++.+.. -+..||.+| ..|-.|+..|.
T Consensus 115 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 153 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG---AGKSWHKSC--------FRCAKCGKSLE 153 (192)
T ss_dssp CEECTTTSCEECSSSCEEE---TTEEECTTT--------CBCTTTCCBCC
T ss_pred CCcCCCCCCEecCcEEEec---CCCccchhc--------CCccccCCCCC
Confidence 4579999999877666643 578999888 44667766664
No 204
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.38 E-value=39 Score=21.53 Aligned_cols=38 Identities=18% Similarity=0.425 Sum_probs=28.0
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCccccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLIE 175 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (218)
..|+.|-+.+.. +.++. -+..||.+| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~-~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLSA---MDTVWHPEC--------FVCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS-SCEEE---TTEEECTTT--------CBCSSSCCBSCS
T ss_pred CccccCCCeecc-eeEEE---CCCeEecCc--------CChhhCCCCCCC
Confidence 589999988875 33332 578999888 458888887764
No 205
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=30.28 E-value=14 Score=20.69 Aligned_cols=12 Identities=33% Similarity=0.880 Sum_probs=7.7
Q ss_pred CCcccccccccc
Q 027813 165 SCPKCRRCLIET 176 (218)
Q Consensus 165 ~CP~CR~~l~~~ 176 (218)
.||+|...+...
T Consensus 7 iCP~C~~~l~s~ 18 (34)
T 3mjh_B 7 ICPQCMKSLGSA 18 (34)
T ss_dssp ECTTTCCEESSH
T ss_pred CCcHHHHHcCCH
Confidence 477777666543
No 206
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.18 E-value=31 Score=22.07 Aligned_cols=38 Identities=21% Similarity=0.496 Sum_probs=27.5
Q ss_pred CcccccccccccCCCceEEcCCCCcccChHHHHHHHhcCCCCcccccccc
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
...|+.|-+.+.. +.+ .. -+..||.+| ..|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~~v--~a-~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQ-GGV--TY-RDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCS-CCE--ES-SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCcCCCCCCEecC-cEE--EE-CCchhhhhh--------CCcccCCCcCC
Confidence 3689999988865 332 23 688999988 45888888774
No 207
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=29.97 E-value=33 Score=26.27 Aligned_cols=28 Identities=25% Similarity=0.576 Sum_probs=17.1
Q ss_pred cccccccccccCCCceEEcCCCCcccChHHH
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFHVRCI 156 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH~~CI 156 (218)
..|+.|-+.+..++.+.. -+..||.+|+
T Consensus 8 ~~C~~C~~~I~~~~~v~a---~g~~wH~~CF 35 (192)
T 1b8t_A 8 KKCGVCQKAVYFAEEVQC---EGSSFHKSCF 35 (192)
T ss_dssp EECTTTCCEECSSCCEEE---TTEEECTTTC
T ss_pred CcCccCCCeecceeEEEe---CCceecCCCC
Confidence 467777777665554432 5667776663
No 208
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=29.34 E-value=1.2e+02 Score=19.72 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=14.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH
Q 027813 48 LHSNVVAVLSFLICSLICSLGFHFLL 73 (218)
Q Consensus 48 f~~~viiil~ill~~li~~l~l~~i~ 73 (218)
++...+=+..+++.+++++++++++.
T Consensus 11 YDY~tLRiGGLifA~vLfi~GI~iil 36 (72)
T 2jo1_A 11 YDYQSLQIGGLVIAGILFILGILIVL 36 (72)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhhccchHHHHHHHHHHHHHHH
Confidence 34445555555566666666555543
No 209
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=28.68 E-value=83 Score=20.24 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=14.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH
Q 027813 48 LHSNVVAVLSFLICSLICSLGFHFLL 73 (218)
Q Consensus 48 f~~~viiil~ill~~li~~l~l~~i~ 73 (218)
++...+=+...++.+++++++++++.
T Consensus 12 YDY~tLRigGLifA~vLfi~GI~iil 37 (67)
T 2jp3_A 12 YDWESLQLGGLIFGGLLCIAGIALAL 37 (67)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHheecchhhHHHHHHHHHHHHH
Confidence 33344455556666666666665554
No 210
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=28.22 E-value=15 Score=32.72 Aligned_cols=48 Identities=17% Similarity=0.296 Sum_probs=32.1
Q ss_pred ccccccccccCCCceEEcCCCCcccChHHHHHHHh-----cCCCCcccccccc
Q 027813 127 ECVICLSNFLPGERVRMLPICNHGFHVRCIDKWLR-----SHSSCPKCRRCLI 174 (218)
Q Consensus 127 ~CaICle~f~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~~CP~CR~~l~ 174 (218)
..-||-..+..+...+.-..|.--||..|+.---. .+..||.|+...-
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 34489888764555555555999999999853211 3457999976544
No 211
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=27.71 E-value=5.5 Score=24.85 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=15.2
Q ss_pred HHHHhcCCCCccccccccccc
Q 027813 157 DKWLRSHSSCPKCRRCLIETC 177 (218)
Q Consensus 157 ~~Wl~~~~~CP~CR~~l~~~~ 177 (218)
+.|+..--.||.|+..|.-..
T Consensus 4 d~~lL~iL~CP~c~~~L~~~~ 24 (56)
T 2kpi_A 4 EAGLLEILACPACHAPLEERD 24 (56)
T ss_dssp CCSCTTSCCCSSSCSCEEEET
T ss_pred CHHHHhheeCCCCCCcceecC
Confidence 455666668999999876553
No 212
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=27.22 E-value=52 Score=22.78 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=15.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHHH
Q 027813 44 AKSCLHSNVVAVLSFLICSLICS 66 (218)
Q Consensus 44 ~~~~f~~~viiil~ill~~li~~ 66 (218)
.+-.+++.+++++++++.+++++
T Consensus 64 ~GlKV~P~~VLv~sl~Fi~~Vi~ 86 (96)
T 2wwb_C 64 PGLKVGPVPVLVMSLLFIASVFM 86 (96)
T ss_dssp CCCCCSSCSHHHHHHHHHHHHHH
T ss_pred CceEECCEEehhhHHHHHHHHHH
Confidence 34677888877777777665544
No 213
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=26.63 E-value=22 Score=19.33 Aligned_cols=18 Identities=50% Similarity=0.807 Sum_probs=13.8
Q ss_pred CcccccccccccCCCceE
Q 027813 125 DTECVICLSNFLPGERVR 142 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr 142 (218)
-.+|+.|..--.+|+..|
T Consensus 9 fhecalcysitdpgerqr 26 (36)
T 2jyp_A 9 FHECALCYSITDPGERQR 26 (36)
T ss_dssp TTCCSSSTTTTTTTCTTC
T ss_pred cchheeEEeecCcchhhh
Confidence 358999998887777544
No 214
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=24.97 E-value=45 Score=23.37 Aligned_cols=39 Identities=28% Similarity=0.634 Sum_probs=20.2
Q ss_pred cccccccccccCCCceEEcCCCCcccC--hHHHHHHHhcCCCCcccccccc
Q 027813 126 TECVICLSNFLPGERVRMLPICNHGFH--VRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 126 ~~CaICle~f~~~~~vr~lp~C~H~FH--~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
..|+.|-..+..++.+... -++.|| .+| .+|-.|+..|.
T Consensus 64 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~~~C--------F~C~~C~~~l~ 104 (126)
T 2xqn_T 64 VVCQGCHNAIDPEVQRVTY--NNFSWHASTEC--------FLCSCCSKCLI 104 (126)
T ss_dssp CBCTTTCSBCCTTSCEEEE--TTEEEESSTTT--------SBCTTTCCBCT
T ss_pred ccCcccCCcCCcCceEEEC--CCCEeeCCCCC--------cCcCCCCCccC
Confidence 3566666665544332221 456666 555 34555655554
No 215
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=24.91 E-value=18 Score=27.11 Aligned_cols=22 Identities=23% Similarity=0.611 Sum_probs=13.3
Q ss_pred CCcccChHHHHHHHhcCCCCcccccccc
Q 027813 147 CNHGFHVRCIDKWLRSHSSCPKCRRCLI 174 (218)
Q Consensus 147 C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (218)
|||.|-.. .....||.|-..+.
T Consensus 138 Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 138 CGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp SCCEESSC------CGGGBCTTTCCBEE
T ss_pred CCCcccCC------CCCCcCCCCCCcce
Confidence 67766533 22346999977653
No 216
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.66 E-value=6.9 Score=25.46 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=13.8
Q ss_pred HHHhcCCCCcccccccccc
Q 027813 158 KWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 158 ~Wl~~~~~CP~CR~~l~~~ 176 (218)
.||..--.||+|+..|.-.
T Consensus 3 ~~LL~iL~CP~ck~~L~~~ 21 (68)
T 2jr6_A 3 KKFLDILVCPVTKGRLEYH 21 (68)
T ss_dssp CSSSCCCBCSSSCCBCEEE
T ss_pred hHHhhheECCCCCCcCeEe
Confidence 4555666799999887654
No 217
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.05 E-value=15 Score=23.14 Aligned_cols=37 Identities=19% Similarity=0.448 Sum_probs=22.7
Q ss_pred CcccccccccccCCCceEEcC--C--CCcccChHHHHHHHh
Q 027813 125 DTECVICLSNFLPGERVRMLP--I--CNHGFHVRCIDKWLR 161 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp--~--C~H~FH~~CI~~Wl~ 161 (218)
-..|+-|...++..+....+. . |+|.|+..|...|-.
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 357888888777665332221 2 667777777776643
No 218
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=23.04 E-value=6.9 Score=25.47 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=13.2
Q ss_pred HHHhcCCCCcccccccccc
Q 027813 158 KWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 158 ~Wl~~~~~CP~CR~~l~~~ 176 (218)
.||..--.||+|+..|.-.
T Consensus 3 ~~LL~iL~CP~ck~~L~~~ 21 (68)
T 2hf1_A 3 AKFLEILVCPLCKGPLVFD 21 (68)
T ss_dssp CCCEEECBCTTTCCBCEEE
T ss_pred hHHhhheECCCCCCcCeEe
Confidence 4455556799999887654
No 219
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=22.41 E-value=7.4 Score=25.48 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=13.2
Q ss_pred HHHhcCCCCcccccccccc
Q 027813 158 KWLRSHSSCPKCRRCLIET 176 (218)
Q Consensus 158 ~Wl~~~~~CP~CR~~l~~~ 176 (218)
.||..--.||.|+..|.-.
T Consensus 3 ~~LL~iL~CP~ck~~L~~~ 21 (70)
T 2js4_A 3 SRLLDILVCPVCKGRLEFQ 21 (70)
T ss_dssp CCCCCCCBCTTTCCBEEEE
T ss_pred hHHhhheECCCCCCcCEEe
Confidence 4555556799999887644
No 220
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=21.42 E-value=1.3e+02 Score=18.36 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=17.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHH
Q 027813 44 AKSCLHSNVVAVLSFLICSLICSL 67 (218)
Q Consensus 44 ~~~~f~~~viiil~ill~~li~~l 67 (218)
.+-..++..++++++.+.++++++
T Consensus 24 ~giKi~P~~Vl~~si~~i~~V~~L 47 (53)
T 1rh5_C 24 SKIRVKPEHVIGVTVAFVIIEAIL 47 (53)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCeehhhhHHHHHHHHHHH
Confidence 467788888888877776666543
No 221
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=20.88 E-value=7.3 Score=25.95 Aligned_cols=14 Identities=21% Similarity=0.660 Sum_probs=12.6
Q ss_pred CCCcccChHHHHHH
Q 027813 146 ICNHGFHVRCIDKW 159 (218)
Q Consensus 146 ~C~H~FH~~CI~~W 159 (218)
.|+|.|+..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999998888
No 222
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=20.03 E-value=1.2e+02 Score=19.02 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=28.4
Q ss_pred CcccccccccccCCCceEEcCCCCcccChH-HHHHH
Q 027813 125 DTECVICLSNFLPGERVRMLPICNHGFHVR-CIDKW 159 (218)
Q Consensus 125 ~~~CaICle~f~~~~~vr~lp~C~H~FH~~-CI~~W 159 (218)
...|+-|-.++..|...-.-...-|.|+.. ||..+
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 468999999999998766655588999876 88875
Done!