BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027814
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 67 SLSAATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYE 126
S S+ ++Y++LG+ S +P +IK+AY+ L L++HPD +P + +E K+F + EAYE
Sbjct: 3 SGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNK-EEAEKKFKLVSEAYE 61
Query: 127 TLSDPNTRALYD 138
LSD R+LYD
Sbjct: 62 VLSDSKKRSLYD 73
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 71 ATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSD 130
A + +Y++LG+ ++ REI++AYK L +KYHPD + ++ E +F ++EAYE L+D
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK--EAEAKFKEIKEAYEVLTD 58
Query: 131 PNTRALYDNH 140
RA YD +
Sbjct: 59 SQKRAAYDQY 68
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 71 ATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSD 130
A + +Y++LG+ ++ REI++AYK L +KYHPD + ++ E +F ++EAYE L+D
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK--EAEAKFKEIKEAYEVLTD 58
Query: 131 PNTRALYDNH 140
RA YD +
Sbjct: 59 SQKRAAYDQY 68
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 71 ATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSD 130
A + +Y++LG+ ++ REI++AYK L +KYHPD + ++ E +F ++EAYE L+D
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK--EAEAKFKEIKEAYEVLTD 58
Query: 131 PNTRALYDNH 140
RA YD +
Sbjct: 59 SQKRAAYDQY 68
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Query: 75 FYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTR 134
+YD+LG+P+S + R+IK+A+ L +KYHPD + + + +F + EAYETLSD N R
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKN---KSPDAEAKFREIAEAYETLSDANRR 65
Query: 135 ALYD 138
YD
Sbjct: 66 KEYD 69
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 67 SLSAATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYE 126
S S+ +Y++L +P+ + IK+AY+ L LK+HPD + PE +E +RF ++ EAYE
Sbjct: 3 SGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKN-PENKEEAERRFKQVAEAYE 61
Query: 127 TLSDPNTRALYDNH 140
LSD R +YD +
Sbjct: 62 VLSDAKKRDIYDRY 75
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 66 QSLSAATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSP--PERIDENTKRFIRLQE 123
+SLS + ES Y +LG+ ++ T +IK++Y+ L LKYHPD +P PE D +F +
Sbjct: 10 RSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAAD----KFKEINN 65
Query: 124 AYETLSDPNTRALYDNHLATGSFIA 148
A+ L+D R +YD + + G ++A
Sbjct: 66 AHAILTDATKRNIYDKYGSLGLYVA 90
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 61.2 bits (147), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Query: 74 SFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNT 133
++YD+LG+ + T E+K+AY+ L LKYHPD +P E ++F ++ +AYE LSD
Sbjct: 7 TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE-----GEKFKQISQAYEVLSDAKK 61
Query: 134 RALYD 138
R LYD
Sbjct: 62 RELYD 66
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 74 SFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNT 133
S+Y++L +P+S + +IK+AY+ L++HPD +P + + K+F + EAYE LSD +
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNK-EFAEKKFKEVAEAYEVLSDKHK 61
Query: 134 RALYDNHLATGSFIAFSSRKPSRYKEG 160
R +YD + G + + PSR + G
Sbjct: 62 REIYDRYGREG--LTGTGTGPSRAEAG 86
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 69 SAATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTK-RFIRLQEAYET 127
S ++ +Y +LG+P++ + +EIK+AY L KYHPD + + D K +F +L EAYE
Sbjct: 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTN---KDDPKAKEKFSQLAEAYEV 59
Query: 128 LSDPNTRALYDNH 140
LSD R YD +
Sbjct: 60 LSDEVKRKQYDAY 72
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 75 FYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTR 134
YDLLG+ S +E+K+ Y+ LKYHPD + +T++F + EA+E L+DP R
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPD-----KPTGDTEKFKEISEAFEILNDPQKR 64
Query: 135 ALYDNH 140
+YD +
Sbjct: 65 EIYDQY 70
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Query: 74 SFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNT 133
+YD+LG+ + E+K+AY+ + LK+HPD +P + ++F ++ +AYE LSD
Sbjct: 9 GYYDVLGVKPDASDNELKKAYRKMALKFHPDKNP-----DGAEQFKQISQAYEVLSDEKK 63
Query: 134 RALYD 138
R +YD
Sbjct: 64 RQIYD 68
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 73 ESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPN 132
++FY LLG+ ++ + REI+QA+K L LK HPD +P F+++ AYE L D +
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDED 59
Query: 133 TRALYDNHLATG 144
R YD + G
Sbjct: 60 LRKKYDKYGEKG 71
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 73 ESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPN 132
++FY LLG+ ++ + REI+QA+K L LK HPD +P F+++ AYE L D +
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDED 78
Query: 133 TRALYDNHLATG 144
R YD + G
Sbjct: 79 LRKKYDKYGEKG 90
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 75 FYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTR 134
+Y LG+ + + EIK+AY+ L+YHPD + +E +F + EAY+ LSDP R
Sbjct: 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEE---KFKEIAEAYDVLSDPRKR 61
Query: 135 ALYDNHLATG 144
++D + G
Sbjct: 62 EIFDRYGEEG 71
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 66 QSLSAATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAY 125
QSLSA Y +LG+ ++ + +IK+AYK L ++HPD + ++ RFI++ +AY
Sbjct: 10 QSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAED---RFIQISKAY 66
Query: 126 ETLSDPNTRALYDNHLATG 144
E LS+ R YD H +G
Sbjct: 67 EILSNEEKRTNYD-HYGSG 84
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 74 SFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNT 133
+ YDLLG+P + T +IK AY YHPD + E +RF R+ +AY L
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSA--EAAERFTRISQAYVVLGSATL 75
Query: 134 RALYDNHL 141
R YD L
Sbjct: 76 RRKYDRGL 83
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 69 SAATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETL 128
S ++ +Y++LG+ + + ++K+AY+ L LK+HPD + T+ F + AY L
Sbjct: 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKN---HAPGATEAFKAIGTAYAVL 59
Query: 129 SDPNTRALYD 138
S+P R YD
Sbjct: 60 SNPEKRKQYD 69
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 66 QSLSAATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAY 125
QS + + +Y +LG+ + + IK AY+ L KYHPDVS + ++ +F L EA+
Sbjct: 21 QSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVS---KENDAEAKFKDLAEAW 77
Query: 126 ETLSDPNTRALYDN 139
E L D RA YD
Sbjct: 78 EVLKDEQRRAEYDQ 91
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 74 SFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNT 133
+Y ++G+ + + IK AY+ L KYHPDVS + + RF + EA+E LSD
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVS---KEPDAEARFKEVAEAWEVLSDEQR 62
Query: 134 RALYDN 139
RA YD
Sbjct: 63 RAEYDQ 68
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 75 FYDLLGIPQSVTPREIKQAYKHLVLKYHPDVS----PPERIDENTKRFIRLQEAYETLSD 130
+Y +LG S ++KQ Y+ L+L YHPD P ++E ++FI + +A++ L +
Sbjct: 18 WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77
Query: 131 PNTRALYD 138
T+ YD
Sbjct: 78 EETKKKYD 85
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 75 FYDLLGIPQSVTPREIKQAYKHLVLKYHPDVS----PPERIDENTKRFIRLQEAYETLSD 130
+Y +LG S ++KQ Y+ L+L YHPD P ++E ++FI + +A++ L +
Sbjct: 12 WYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGN 71
Query: 131 PNTRALYD 138
T+ YD
Sbjct: 72 EETKREYD 79
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 56 LRRGPIKASAQSLSAATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPD-VSPPERIDEN 114
+R G KA + +Y +LG+ ++ +EI +AY+ L L++HPD E +
Sbjct: 365 IREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKA 424
Query: 115 TKRFIRLQEAYETLSDPNTRALYDN 139
K+FI + A E LSDP R +D+
Sbjct: 425 EKKFIDIAAAKEVLSDPEMRKKFDD 449
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 56 LRRGPIKASAQSLSAATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPD-VSPPERIDEN 114
+R G KA + +Y +LG+ ++ +EI +AY+ L L++HPD E +
Sbjct: 365 IREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKA 424
Query: 115 TKRFIRLQEAYETLSDPNTRALYDN 139
K+FI + A E LSDP R +D+
Sbjct: 425 EKKFIDIAAAKEVLSDPEXRKKFDD 449
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 69 SAATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTK---RFIRLQEAY 125
S TE +Y LLG + + +I +K L+ HPD P EN K F +LQ+A
Sbjct: 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHP-----ENPKAVETFQKLQKAK 70
Query: 126 ETLSDPNTRALYDN 139
E L++ +RA YD+
Sbjct: 71 EILTNEESRARYDH 84
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 65 AQSLSAATESFYDLLGIP-QSVTPREIKQAYKHLVLKYHPD-VSPPERIDENTKRFIRLQ 122
A L E+ YD+L + + +++ +AY+ L K+HPD V E +RF +
Sbjct: 7 APELYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIA 66
Query: 123 EAYETLSDPNTRALYDNHL 141
AYETL D + YD +L
Sbjct: 67 TAYETLKDDEAKTNYDYYL 85
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 71 ATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKR-FIRLQEAYETLS 129
A E+ + +G+ VTP ++K+ Y+ VL HPD + + ++ K F+ L +A+
Sbjct: 47 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 106
Query: 130 DPNTRALY 137
+ + LY
Sbjct: 107 NQGQKPLY 114
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 71 ATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKR-FIRLQEAYETLS 129
A E+ + +G+ VTP ++K+ Y+ VL HPD + + ++ K F+ L +A+
Sbjct: 115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 174
Query: 130 DPNTRAL 136
+ + L
Sbjct: 175 NQGQKPL 181
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 63 ASAQSLSAATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKR-FIRL 121
++ ++ A E+ + +G VTP ++K+ Y+ VL HPD + + ++ K F L
Sbjct: 26 STXHTVLWAGETKWKPVGXADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKXIFXEL 85
Query: 122 QEAYETLSDPNTRALY 137
+A+ + + LY
Sbjct: 86 NDAWSEFENQGQKPLY 101
>pdb|3HOC|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
pdb|3HOC|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
Length = 272
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 18/80 (22%)
Query: 40 PHLPKLSFSLKTQSGSLRRGPIKASAQSLSAATESFY----------------DLLGIPQ 83
P LP +FS QSG + + A L +S+ D LGIPQ
Sbjct: 184 PQLPITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTNAREAMQQADDWLGIPQ 243
Query: 84 SVTPREI--KQAYKHLVLKY 101
+TP EI KH V+ Y
Sbjct: 244 VITPEEIVDPNVDKHSVMTY 263
>pdb|2WA7|A Chain A, Structure Of The M202v Mutant Of Human Filamin B Actin
Binding Domain At 1.85 Angstroms Resolution
Length = 245
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 26/82 (31%)
Query: 40 PHLPKLSFSLKTQSGSLRRGPIKASAQSLSAATESFY----------------DLLGIPQ 83
P+LP +F+ Q G + + A L ES+ D LG+PQ
Sbjct: 157 PYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAVQQADDWLGVPQ 216
Query: 84 SVTPREIKQAYKHLVLKYHPDV 105
+TP EI HPDV
Sbjct: 217 VITPEEI----------IHPDV 228
>pdb|2WA5|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
At 1.9 Angstroms Resolution
Length = 245
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 26/82 (31%)
Query: 40 PHLPKLSFSLKTQSGSLRRGPIKASAQSLSAATESFY----------------DLLGIPQ 83
P+LP +F+ Q G + + A L ES+ D LG+PQ
Sbjct: 157 PYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAMQQADDWLGVPQ 216
Query: 84 SVTPREIKQAYKHLVLKYHPDV 105
+TP EI HPDV
Sbjct: 217 VITPEEI----------IHPDV 228
>pdb|2WA6|A Chain A, Structure Of The W148r Mutant Of Human Filamin B Actin
Binding Domain At 1.95 Angstroms Resolution
Length = 245
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 26/82 (31%)
Query: 40 PHLPKLSFSLKTQSGSLRRGPIKASAQSLSAATESFY----------------DLLGIPQ 83
P+LP +F+ Q G + + A L ES+ D LG+PQ
Sbjct: 157 PYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAMQQADDWLGVPQ 216
Query: 84 SVTPREIKQAYKHLVLKYHPDV 105
+TP EI HPDV
Sbjct: 217 VITPEEI----------IHPDV 228
>pdb|3FER|A Chain A, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|B Chain B, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|C Chain C, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|D Chain D, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a
Length = 262
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 26/82 (31%)
Query: 40 PHLPKLSFSLKTQSGSLRRGPIKASAQSLSAATESFY----------------DLLGIPQ 83
P+LP +F+ Q G + + A L ES+ D LG+PQ
Sbjct: 164 PYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAXQQADDWLGVPQ 223
Query: 84 SVTPREIKQAYKHLVLKYHPDV 105
+TP EI HPDV
Sbjct: 224 VITPEEI----------IHPDV 235
>pdb|4B7L|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
pdb|4B7L|B Chain B, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
Length = 347
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 26/82 (31%)
Query: 40 PHLPKLSFSLKTQSGSLRRGPIKASAQSLSAATESFY----------------DLLGIPQ 83
P+LP +F+ Q G + + A L ES+ D LG+PQ
Sbjct: 154 PYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAMQQADDWLGVPQ 213
Query: 84 SVTPREIKQAYKHLVLKYHPDV 105
+TP EI HPDV
Sbjct: 214 VITPEEI----------IHPDV 225
>pdb|3HOP|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOP|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOR|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
pdb|3HOR|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
Length = 272
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 18/80 (22%)
Query: 40 PHLPKLSFSLKTQSGSLRRGPIKASAQSLSAATESFY----------------DLLGIPQ 83
P LP +FS QSG + + A L +S+ D LGIPQ
Sbjct: 184 PQLPITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTNAREAMQQADDWLGIPQ 243
Query: 84 SVTPREI--KQAYKHLVLKY 101
+TP EI +H V+ Y
Sbjct: 244 VITPEEIVDPNVDEHSVMTY 263
>pdb|2WFN|A Chain A, Filamin A Actin Binding Domain
pdb|2WFN|B Chain B, Filamin A Actin Binding Domain
Length = 278
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 18/80 (22%)
Query: 40 PHLPKLSFSLKTQSGSLRRGPIKASAQSLSAATESFY----------------DLLGIPQ 83
P LP +FS QSG + + A L +S+ D LGIPQ
Sbjct: 181 PQLPITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTNAREAMQQADDWLGIPQ 240
Query: 84 SVTPREI--KQAYKHLVLKY 101
+TP EI +H V+ Y
Sbjct: 241 VITPEEIVDPNVDEHSVMTY 260
>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
Length = 94
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 63 ASAQSLSAATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKR-FIRL 121
++ ++ A E+ + +G+ VTP ++K+ Y+ VL HP + + ++ K F+ L
Sbjct: 24 STMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMEL 83
Query: 122 QEAY 125
+A+
Sbjct: 84 NDAW 87
>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 92
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 63 ASAQSLSAATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKR-FIRL 121
++ ++ A E+ + +G+ VTP ++K+ Y+ VL HP + + ++ K F+ L
Sbjct: 23 STMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMEL 82
Query: 122 QEAY 125
+A+
Sbjct: 83 NDAW 86
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 76 YDLLGIPQSVTPREIKQAYKHLVLKYHPD--VSP 107
+D+LG+ + E+ +AY+ L + HPD V+P
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAP 63
>pdb|3EE4|A Chain A, R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCULOSIS
pdb|4AC8|A Chain A, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
pdb|4AC8|B Chain B, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
pdb|4AC8|C Chain C, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
pdb|4AC8|D Chain D, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
Length = 323
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 175 LTELKRRSMNKDSRDHMSWGSRIRRRHRSKTTADD 209
+ EL RR + D R HM+WG+ RRH ADD
Sbjct: 200 MQELVRR-IGDDERRHMAWGTFTCRRH---VAADD 230
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|B Chain B, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|C Chain C, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYO|A Chain A, Structure Of Usp14 Bound To Ubquitin Aldehyde
Length = 404
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 42 LPKLSFSLKTQSGSLRRGPIKASAQSLSAATESFYDLLGIPQSVTPREIKQAYKHLVL 99
+P+L +LK +G+LR ASAQ ++AA +D + S P I + H+
Sbjct: 36 VPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLHMAF 93
>pdb|1QPS|A Chain A, The Crystal Structure Of A Post-Reactive Cognate Dna-Eco
Ri Complex At 2.50 A In The Presence Of Mn2+ Ion
Length = 261
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 138 DNHLATGSFIAFSSRKP-SRYKEGLDDYGTWRIRWQSQLTELKRRSMN---------KDS 187
D L F++ SS KP E DDYG WR+ ++ + +N +
Sbjct: 58 DPDLGGTLFVSNSSIKPDGGIVEVKDDYGEWRVVLVAEAKHQGKDIINIRNGLLVGKRGD 117
Query: 188 RDHMSWGSRIRRRHRS 203
+D M+ G+ I R H++
Sbjct: 118 QDLMAAGNAIERSHKN 133
>pdb|1ERI|A Chain A, X-Ray Structure Of The Dna-Eco Ri Endonuclease-Dna
Recognition Complex: The Recognition Network And The
Integration Of Recognition And Cleavage
pdb|1CKQ|A Chain A, Pre-Transition State Eco Ri EndonucleaseCOGNATE DNA
(Tcgcgaattcgcg) Complex
pdb|1CL8|A Chain A, A Pre-Transition State Eco Ri EndonucleaseCOGNATE DNA
(Tcgcgapttcgcg) Complex With Dna Base Analog Purine (P)
pdb|1QC9|A Chain A, The Crystallographic Structure Of Restriction Endonuclease
Eco Ri At 3.3 A In The Absense Of Dna
pdb|1QC9|B Chain B, The Crystallographic Structure Of Restriction Endonuclease
Eco Ri At 3.3 A In The Absense Of Dna
pdb|1QC9|C Chain C, The Crystallographic Structure Of Restriction Endonuclease
Eco Ri At 3.3 A In The Absense Of Dna
Length = 276
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 138 DNHLATGSFIAFSSRKP-SRYKEGLDDYGTWRIRWQSQLTELKRRSMN---------KDS 187
D L F++ SS KP E DDYG WR+ ++ + +N +
Sbjct: 73 DPDLGGTLFVSNSSIKPDGGIVEVKDDYGEWRVVLVAEAKHQGKDIINIRNGLLVGKRGD 132
Query: 188 RDHMSWGSRIRRRHRS 203
+D M+ G+ I R H++
Sbjct: 133 QDLMAAGNAIERSHKN 148
>pdb|2OXV|A Chain A, Structure Of The A138t Promiscuous Mutant Of The Ecori
Restriction Endonuclease Bound To Its Cognate
Recognition Site
Length = 277
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 138 DNHLATGSFIAFSSRKP-SRYKEGLDDYGTWRIRWQSQLTELKRRSMN---------KDS 187
D L F++ SS KP E DDYG WR+ ++ + +N +
Sbjct: 74 DPDLGGTLFVSNSSIKPDGGIVEVKDDYGEWRVVLVAEAKHQGKDIINIRNGLLVGKRGD 133
Query: 188 RDHMSWGSRIRRRHRS 203
+D M+ G+ I R H++
Sbjct: 134 QDLMTAGNAIERSHKN 149
>pdb|1RFZ|A Chain A, Structure Of Protein Of Unknown Function From Bacillus
Stearothermophilus
pdb|1RFZ|B Chain B, Structure Of Protein Of Unknown Function From Bacillus
Stearothermophilus
pdb|1RFZ|C Chain C, Structure Of Protein Of Unknown Function From Bacillus
Stearothermophilus
pdb|1RFZ|D Chain D, Structure Of Protein Of Unknown Function From Bacillus
Stearothermophilus
Length = 168
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 83 QSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEA 124
+ VT +I + +L KYHPD++ E I EN R I +E
Sbjct: 23 RGVTVEKIAELVYYLQSKYHPDLTXEECI-ENVNRVISKREV 63
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 72 TESFYDLL--GIPQ-----SVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEA 124
T +FY+L P+ ++ +++ Y+ L ++HPD++ + +++ L +A
Sbjct: 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMA-----QQGSEQSSTLNQA 64
Query: 125 YETLSDPNTRALY 137
Y TL DP R+ Y
Sbjct: 65 YHTLKDPLRRSQY 77
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 72 TESFYDLL--GIPQ-----SVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEA 124
T +FY+L P+ ++ +++ Y+ L ++HPD++ + +++ L +A
Sbjct: 2 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMA-----QQGSEQSSTLNQA 56
Query: 125 YETLSDPNTRALY 137
Y TL DP R+ Y
Sbjct: 57 YHTLKDPLRRSQY 69
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 74 SFYDLLGIPQ--SVTPREIKQAYKHLVLKYHPD----VSPPERIDENTKRFIRLQEAYET 127
++++L G+P + + ++ L ++HPD S +R+ ++ ++ +AY+T
Sbjct: 5 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRL-XAVQQAAQINDAYQT 63
Query: 128 LSDPNTRALY 137
L DP RA Y
Sbjct: 64 LKDPLRRAEY 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,173,622
Number of Sequences: 62578
Number of extensions: 235340
Number of successful extensions: 661
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 601
Number of HSP's gapped (non-prelim): 54
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)