Citrus Sinensis ID: 027815

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MVDNANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFSSLLNELTSALFLISLVKRSVANVYSENYRCNEQFVFSL
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEcccEEEEEcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEccccEEEEEcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccHHHHHHHHcccccEEEcc
Coil and Loop (DISEMBL)
mvdnanwelknccnrdqVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACkltcgdvegmqvhaneggatqtrgGIYWLILpagylgssFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFSSLLNELTSALFLISLVKRSVAnvysenyrcneQFVFSL
Flexible Loop (DISEMBL)
mvdnanwelknccnrdQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFSSLLNELTSALFLISLVKRSVANVysenyrcneqfvfsl
Low Complexity Region (SEG)
MVDNANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGClalalfivlfiaQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFSSLLNELTSALFLISLVKRSVANVYSENYRCNEQFVFSL
Disordered region (IsUnstruct)
*****NWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFSSLLNELTSALFLISLVKRSVANVYSENYRCNEQFVF**
Disordered Region (DISOPRED)
****ANW*LKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFSSLLNELTSALFLISLVKRSVANVYSENYRCNEQFVFSL
Disordered Region (DISEMBL)
MVDNANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFSSLLNELTSALFLISLVKRSVANVYSENYRCNEQFVFSL
Disordered Region (DISPRO)
****ANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFSSLLNELTSALFLISLVKRSVANVYSENYRCNEQFVFSL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVDNANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFSSLLNELTSALFLISLVKRSVANVYSENYRCNEQFVFSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
255580982	221	conserved hypothetical protein [Ricinus	0.922	0.909	0.747	9e-82
224079325	233	predicted protein [Populus trichocarpa]	0.844	0.789	0.804	7e-80
449441740	233	PREDICTED: uncharacterized protein LOC10	0.922	0.862	0.733	1e-79
42563004	234	uncharacterized protein [Arabidopsis tha	0.935	0.871	0.732	3e-78
297838433	235	hypothetical protein ARALYDRAFT_475801 [	0.940	0.872	0.719	6e-78
225452059	233	PREDICTED: uncharacterized protein LOC10	0.922	0.862	0.708	5e-76
297734221	462	unnamed protein product [Vitis vinifera]	0.844	0.398	0.739	2e-75
356511299	234	PREDICTED: uncharacterized protein LOC10	0.926	0.863	0.705	5e-75
225455968	233	PREDICTED: uncharacterized protein LOC10	0.922	0.862	0.684	1e-74
351721488	247	uncharacterized protein LOC100306005 [Gl	0.922	0.813	0.679	8e-73

>gi|255580982|ref|XP_002531309.1| conserved hypothetical protein [Ricinus communis] gi|223529100|gb|EEF31081.1| conserved hypothetical protein [Ricinus communis]

 Score =  308 bits (790), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 154/206 (74%), Positives = 173/206 (83%), Gaps = 5/206 (2%)

Query: 5   ANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCG 64
            NWELKNCC  DQV FLVTIGVF++VILALWRTIL+TPFKLITVFLHEASHA+ACKLTCG
Sbjct: 2   PNWELKNCCQHDQVVFLVTIGVFSLVILALWRTILMTPFKLITVFLHEASHAVACKLTCG 61

Query: 65  DVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 124
           DVEG+QVHANEGG TQTRGGIYW+ILPAGYLGSSFWGMAL+LASTNLTTARIAAGCL +A
Sbjct: 62  DVEGIQVHANEGGVTQTRGGIYWVILPAGYLGSSFWGMALILASTNLTTARIAAGCLGVA 121

Query: 125 LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFSSLLN 184
           L +VLFIAQNWTLRGLCIGFI+FLAV+W+LQE T+VRILRYVILFIG+  S      + +
Sbjct: 122 LLVVLFIAQNWTLRGLCIGFIIFLAVVWILQETTTVRILRYVILFIGVMNSLFSVYDIYD 181

Query: 185 ELTSALFLISLVKRSVANVYSENYRC 210
           +L S       V  S A  ++E   C
Sbjct: 182 DLIS-----RRVHSSDAEKFAELCPC 202

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079325|ref|XP_002305821.1| predicted protein [Populus trichocarpa] gi|222848785|gb|EEE86332.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (773), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 148/184 (80%), Positives = 163/184 (88%)

Query: 5   ANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCG 64
            NWELKNCC  DQV +LVTI +F+VVILALWRT ++TPFKLITVFLHEASHAIACKLTCG
Sbjct: 2   PNWELKNCCEGDQVSYLVTIAIFSVVILALWRTFIMTPFKLITVFLHEASHAIACKLTCG 61

Query: 65  DVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 124
            VEGMQVHANEGG TQTRGG+YWLILPAGYLGSSFWGMALVLASTNL TARIAAG LA+A
Sbjct: 62  QVEGMQVHANEGGVTQTRGGVYWLILPAGYLGSSFWGMALVLASTNLITARIAAGGLAVA 121

Query: 125 LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFSSLLN 184
           L IVLFIAQNWTLRGLCIGFI+FLAV+WVLQE+T+VRILRYVILFIG+  S      + +
Sbjct: 122 LLIVLFIAQNWTLRGLCIGFIIFLAVVWVLQEKTTVRILRYVILFIGVMNSLFSVYDIYD 181

Query: 185 ELTS 188
           +L S
Sbjct: 182 DLIS 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441740|ref|XP_004138640.1| PREDICTED: uncharacterized protein LOC101216469 [Cucumis sativus] gi|449490096|ref|XP_004158506.1| PREDICTED: uncharacterized protein LOC101228190 [Cucumis sativus]

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 151/206 (73%), Positives = 172/206 (83%), Gaps = 5/206 (2%)

Query: 5   ANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCG 64
            NWEL+NCC+RDQV FLVTIGVFT+VILALWRT ++TPFKLITVFLHEASHAIACKLTCG
Sbjct: 2   PNWELRNCCHRDQVLFLVTIGVFTLVILALWRTFIITPFKLITVFLHEASHAIACKLTCG 61

Query: 65  DVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 124
           +VEG+QVHANEGG TQTRGG YWLILPAGYLGSSFWGMA++LASTNL TARIAAGCL LA
Sbjct: 62  EVEGIQVHANEGGVTQTRGGAYWLILPAGYLGSSFWGMAMILASTNLLTARIAAGCLGLA 121

Query: 125 LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFSSLLN 184
           L +VLFIA+NWTLRGLC+GFI+FLAV+WVLQE T+VRILRYVILFIG+  S      + +
Sbjct: 122 LLVVLFIAKNWTLRGLCVGFIIFLAVVWVLQETTTVRILRYVILFIGVMNSLFSVYDIYD 181

Query: 185 ELTSALFLISLVKRSVANVYSENYRC 210
           +L S       V  S A  ++E   C
Sbjct: 182 DLIS-----RRVNSSDAEKFAELCPC 202

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42563004|ref|NP_176877.2| uncharacterized protein [Arabidopsis thaliana] gi|117168235|gb|ABK32200.1| At1g67060 [Arabidopsis thaliana] gi|222424301|dbj|BAH20107.1| AT1G67060 [Arabidopsis thaliana] gi|332196470|gb|AEE34591.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 153/209 (73%), Positives = 172/209 (82%), Gaps = 5/209 (2%)

Query: 2   VDNANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKL 61
           +D+ NWEL+ CCNR+Q  FL+TIGVFTVVIL LWRT LLTPFKLITVFLHEASHA+ACKL
Sbjct: 1   MDSPNWELRGCCNRNQNTFLITIGVFTVVILLLWRTFLLTPFKLITVFLHEASHAVACKL 60

Query: 62  TCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCL 121
           TCGDVEGM+V+ANEGG+T TRGGIYWLILPAGYLGSSFWGMAL+LASTNL TARIAA  L
Sbjct: 61  TCGDVEGMEVNANEGGSTTTRGGIYWLILPAGYLGSSFWGMALILASTNLLTARIAAAGL 120

Query: 122 ALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFSS 181
            LALFIVLFIA+NWTLRGLCIGFIVFLAVIWVLQE T+V+ILRYVILFIG+  S      
Sbjct: 121 GLALFIVLFIAKNWTLRGLCIGFIVFLAVIWVLQELTTVKILRYVILFIGVMNSLFSVYD 180

Query: 182 LLNELTSALFLISLVKRSVANVYSENYRC 210
           + ++L S       V  S A  ++E   C
Sbjct: 181 IYDDLIS-----RRVHSSDAEKFAEICPC 204

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838433|ref|XP_002887098.1| hypothetical protein ARALYDRAFT_475801 [Arabidopsis lyrata subsp. lyrata] gi|297332939|gb|EFH63357.1| hypothetical protein ARALYDRAFT_475801 [Arabidopsis lyrata subsp. lyrata]

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 151/210 (71%), Positives = 173/210 (82%), Gaps = 5/210 (2%)

Query: 1   MVDNANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACK 60
           M+++ NWEL+ CCNR+Q  FL+TIG+FTVVIL LWRT LLTPFKLITVFLHEASHA+ACK
Sbjct: 1   MMNSPNWELRGCCNRNQNTFLITIGIFTVVILLLWRTFLLTPFKLITVFLHEASHAVACK 60

Query: 61  LTCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGC 120
           LTCGDVEGM+V+ANEGG+T TRGGIYWLILPAGYLGSSFWGMAL+LASTNL TARIAA  
Sbjct: 61  LTCGDVEGMEVNANEGGSTTTRGGIYWLILPAGYLGSSFWGMALILASTNLLTARIAAAG 120

Query: 121 LALALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFS 180
           L LALFIVLFIA+NWTLRGLCIGFIVFLA+IWVLQE T+V+ILRYVILFIG+  S     
Sbjct: 121 LGLALFIVLFIAKNWTLRGLCIGFIVFLAIIWVLQELTTVKILRYVILFIGVMNSLFSVY 180

Query: 181 SLLNELTSALFLISLVKRSVANVYSENYRC 210
            + ++L S       V  S A  ++E   C
Sbjct: 181 DIYDDLIS-----RRVHSSDAEKFAEICPC 205

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452059|ref|XP_002283944.1| PREDICTED: uncharacterized protein LOC100253235 [Vitis vinifera] gi|296087266|emb|CBI33640.3| unnamed protein product [Vitis vinifera]

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 146/206 (70%), Positives = 165/206 (80%), Gaps = 5/206 (2%)

Query: 5   ANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCG 64
           ANWELKNCC  DQV FL TIGVFTVVIL LWRT LLTPFKLITVFLHEASHAIACKLTCG
Sbjct: 2   ANWELKNCCKHDQVVFLATIGVFTVVILLLWRTFLLTPFKLITVFLHEASHAIACKLTCG 61

Query: 65  DVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 124
            VEG+QV+A+EGG TQTRGG+YWLILPAGYLGSSFWGM  +LASTNL T+RIAAGC A+A
Sbjct: 62  QVEGIQVNADEGGVTQTRGGVYWLILPAGYLGSSFWGMVFILASTNLLTSRIAAGCFAVA 121

Query: 125 LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFSSLLN 184
           L +VLFIA+NWTLRGLCIGFI+FLA+IWVLQE T VRILR+ ILF+G+  S      + +
Sbjct: 122 LIVVLFIAKNWTLRGLCIGFIIFLAIIWVLQETTKVRILRFFILFMGVMNSLFSVYDIYD 181

Query: 185 ELTSALFLISLVKRSVANVYSENYRC 210
           +L S       V  S A  ++E   C
Sbjct: 182 DLIS-----RRVHSSDAEKFAEICPC 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734221|emb|CBI15468.3| unnamed protein product [Vitis vinifera]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 136/184 (73%), Positives = 158/184 (85%)

Query: 5   ANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCG 64
           ANWELK CCN +QV FL TI + TVVILALWRTILLTPFKL+TVFLHEASHAIACKLTCG
Sbjct: 231 ANWELKKCCNHEQVVFLTTISICTVVILALWRTILLTPFKLVTVFLHEASHAIACKLTCG 290

Query: 65  DVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 124
            VEG+QVHA+EGG TQTRGGIYWLILPAGYLGSSFWGM L++ASTN+ TA+IAAGC A A
Sbjct: 291 HVEGIQVHADEGGTTQTRGGIYWLILPAGYLGSSFWGMVLIIASTNVLTAKIAAGCFAFA 350

Query: 125 LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFSSLLN 184
           L +VLF+A+NWTLRGLCIGFI+ +AV+W+LQE T +RILRY+ILFIG+  S      + +
Sbjct: 351 LLVVLFVAKNWTLRGLCIGFIILIAVVWLLQETTEIRILRYIILFIGVMNSLFSVYDIYD 410

Query: 185 ELTS 188
           +L S
Sbjct: 411 DLIS 414

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511299|ref|XP_003524364.1| PREDICTED: uncharacterized protein LOC100814166 [Glycine max]

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 146/207 (70%), Positives = 163/207 (78%), Gaps = 5/207 (2%)

Query: 4   NANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTC 63
             NWELKNCCN DQV FLVT+ V TVVILAL RT+LL PFKL+TVFLHEASHAIACKLTC
Sbjct: 2   KPNWELKNCCNHDQVVFLVTVAVCTVVILALRRTVLLRPFKLVTVFLHEASHAIACKLTC 61

Query: 64  GDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLAL 123
           G +EG+QVHA+EGG TQTRGGIYWLILPAGYLGSSFWGM L+LASTNL TARIAAGC   
Sbjct: 62  GHIEGIQVHADEGGTTQTRGGIYWLILPAGYLGSSFWGMVLILASTNLLTARIAAGCFIA 121

Query: 124 ALFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFSSLL 183
           AL IVLFIA+NWTLRGLCIGFI+FL VIW+LQE T VRILRY+ILFIG+  S      + 
Sbjct: 122 ALLIVLFIAKNWTLRGLCIGFIIFLGVIWILQETTKVRILRYIILFIGVMNSLFSVYDIY 181

Query: 184 NELTSALFLISLVKRSVANVYSENYRC 210
           ++L S       V  S A  ++E   C
Sbjct: 182 DDLIS-----RRVHSSDAEKFAEVCPC 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455968|ref|XP_002278471.1| PREDICTED: uncharacterized protein LOC100247427 [Vitis vinifera]

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 141/206 (68%), Positives = 165/206 (80%), Gaps = 5/206 (2%)

Query: 5   ANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCG 64
           ANWELK CCN +QV FL TI + TVVILALWRTILLTPFKL+TVFLHEASHAIACKLTCG
Sbjct: 2   ANWELKKCCNHEQVVFLTTISICTVVILALWRTILLTPFKLVTVFLHEASHAIACKLTCG 61

Query: 65  DVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 124
            VEG+QVHA+EGG TQTRGGIYWLILPAGYLGSSFWGM L++ASTN+ TA+IAAGC A A
Sbjct: 62  HVEGIQVHADEGGTTQTRGGIYWLILPAGYLGSSFWGMVLIIASTNVLTAKIAAGCFAFA 121

Query: 125 LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFSSLLN 184
           L +VLF+A+NWTLRGLCIGFI+ +AV+W+LQE T +RILRY+ILFIG+  S      + +
Sbjct: 122 LLVVLFVAKNWTLRGLCIGFIILIAVVWLLQETTEIRILRYIILFIGVMNSLFSVYDIYD 181

Query: 185 ELTSALFLISLVKRSVANVYSENYRC 210
           +L S       V  S A  ++E   C
Sbjct: 182 DLIS-----RRVNSSDAEKFAEVCPC 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721488|ref|NP_001236187.1| uncharacterized protein LOC100306005 [Glycine max] gi|255627249|gb|ACU13969.1| unknown [Glycine max]

 Score =  278 bits (712), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 140/206 (67%), Positives = 162/206 (78%), Gaps = 5/206 (2%)

Query: 5   ANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCG 64
            NWEL+NCC+ DQ  F+  +  FTVVIL LWRT LLTPFKLITVFLHEASHAIAC LTCG
Sbjct: 2   PNWELRNCCDHDQKVFIACVAAFTVVILVLWRTFLLTPFKLITVFLHEASHAIACWLTCG 61

Query: 65  DVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALA 124
            VEG+QVHANEGG TQTRGGIYW+ILPAGYLGSSFWGMAL+LASTNL TA+IAAGC   A
Sbjct: 62  KVEGIQVHANEGGVTQTRGGIYWVILPAGYLGSSFWGMALILASTNLLTAKIAAGCFIAA 121

Query: 125 LFIVLFIAQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFSSLLN 184
           L +VLF+A+NWTLRGLCIGFIVF+AVIW+LQE+T+V +LRYVILFIG+  S      + +
Sbjct: 122 LIVVLFLAKNWTLRGLCIGFIVFIAVIWLLQEKTTVHVLRYVILFIGVMNSLFSVYDIYD 181

Query: 185 ELTSALFLISLVKRSVANVYSENYRC 210
           +L S       V  S A  ++E   C
Sbjct: 182 DLIS-----RRVHSSDAEKFAEVCPC 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
TAIR|locus:2019743	234	AT1G67060 "AT1G67060" [Arabido	0.857	0.799	0.732	1.3e-70
ASPGD|ASPL0000071635	269	AN4854 [Emericella nidulans (t	0.802	0.650	0.306	4.7e-16
UNIPROTKB|Q486T6	226	CPS_1186 "Putative membrane pr	0.738	0.712	0.320	1.2e-12
TIGR_CMR|CPS_1186	226	CPS_1186 "putative membrane pr	0.738	0.712	0.320	1.2e-12
UNIPROTKB|Q8EE06	233	SO_2584 "Membrane zinc metallo	0.738	0.690	0.278	3.3e-07
TIGR_CMR|SO_2584	233	SO_2584 "hypothetical protein"	0.738	0.690	0.278	3.3e-07

TAIR|locus:2019743 AT1G67060 "AT1G67060" [Arabidopsis thaliana (taxid:3702)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 137/187 (73%), Positives = 154/187 (82%)

Query:     2 VDNANWELKNCCNRDQVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKL 61
             +D+ NWEL+ CCNR+Q  FL+TIGVFTVVIL LWRT LLTPFKLITVFLHEASHA+ACKL
Sbjct:     1 MDSPNWELRGCCNRNQNTFLITIGVFTVVILLLWRTFLLTPFKLITVFLHEASHAVACKL 60

Query:    62 TCGDVEGMQVHANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCX 121
             TCGDVEGM+V+ANEGG+T TRGGIYWLILPAGYLGSSFWGMAL+LASTNL TARIAA   
Sbjct:    61 TCGDVEGMEVNANEGGSTTTRGGIYWLILPAGYLGSSFWGMALILASTNLLTARIAAAGL 120

Query:   122 XXXXXXXXXXXQNWTLRGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGICLSCCIFSS 181
                        +NWTLRGLCIGFIVFLAVIWVLQE T+V+ILRYVILFIG+  S      
Sbjct:   121 GLALFIVLFIAKNWTLRGLCIGFIVFLAVIWVLQELTTVKILRYVILFIGVMNSLFSVYD 180

Query:   182 LLNELTS 188
             + ++L S
Sbjct:   181 IYDDLIS 187

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

ASPGD|ASPL0000071635 AN4854 [Emericella nidulans (taxid:162425)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 61/199 (30%), Positives = 95/199 (47%)

Query:    22 VTIGV---FTVVILALWRTILLT----PFKLITVFLHEASHAIACKLTCGDVEGMQVHAN 74
             VT+GV   + VVI  LW    L     PFK++ +  HE  HAI    T G V+ + +  +
Sbjct:    34 VTLGVMAAYVVVIAILWNVPYLRYSLWPFKMLVIAFHEFGHAITACCTGGRVKSISLDPH 93

Query:    75 EGGATQTRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCXXXXXXXXXXXXQN 134
             EGG T  +GG+  + LPAGYLGSS  G  L+ A  N+  +++A+                
Sbjct:    94 EGGVTHMQGGMAAITLPAGYLGSSIIGALLIFAGFNIIASKVASIVLGVCFLLTLW---- 149

Query:   135 WTLRGLCIGFIVFLAV-----IWVLQEETSVRILRYVILFIGICLSCCIFSSLLNELTSA 189
             W  R L     V LAV      W +    +   L++V+LFIG+  +      + ++L   
Sbjct:   150 WARRDLLTIVTVLLAVGLLVACWFIAHGEA---LKWVVLFIGVMSALYSVWDICDDL--- 203

Query:   190 LFLISLVKRSVANVYSENY 208
               ++  V  S A+V+++ Y
Sbjct:   204 --ILRKVNSSDASVFAQRY 220

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q486T6 CPS_1186 "Putative membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 57/178 (32%), Positives = 88/178 (49%)

Query:    17 QVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEG 76
             Q+ FL+   V  ++I  +   I+  P   +  + HE SH IA  LT G++  +Q+ AN  
Sbjct:    17 QLYFLL---VAAIIIRQI--PIVSIPLNWLESYFHEISHGIAALLTGGEIMRIQLFANGA 71

Query:    77 GATQTRGGIYWLILPAGYLGSSFWGMALV-LASTNLTTARIAAGCXXXXXXXXXXXXQNW 135
             G   TRGG+ ++I   GY G++FWG  L  LA+++  TA+I +G               W
Sbjct:    72 GLCTTRGGLSFIISFFGYAGATFWGWLLFKLANSHQRTAQIVSGFMIVLLLVSIIF---W 128

Query:   136 TLRGLCIGFIVFLAVIWVLQ-EETSVRILRYVILFIGICLSCCIFSSLLNELTSALFL 192
                 L I  I  LAV++VL  +   +  L+ ++ F G+       S LLN L S  +L
Sbjct:   129 ARDLLTIIIISSLAVMFVLTIKMRRLYTLQVLLKFFGL-------SILLNSLFSPTYL 179

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_1186 CPS_1186 "putative membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 57/178 (32%), Positives = 88/178 (49%)

Query:    17 QVRFLVTIGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEG 76
             Q+ FL+   V  ++I  +   I+  P   +  + HE SH IA  LT G++  +Q+ AN  
Sbjct:    17 QLYFLL---VAAIIIRQI--PIVSIPLNWLESYFHEISHGIAALLTGGEIMRIQLFANGA 71

Query:    77 GATQTRGGIYWLILPAGYLGSSFWGMALV-LASTNLTTARIAAGCXXXXXXXXXXXXQNW 135
             G   TRGG+ ++I   GY G++FWG  L  LA+++  TA+I +G               W
Sbjct:    72 GLCTTRGGLSFIISFFGYAGATFWGWLLFKLANSHQRTAQIVSGFMIVLLLVSIIF---W 128

Query:   136 TLRGLCIGFIVFLAVIWVLQ-EETSVRILRYVILFIGICLSCCIFSSLLNELTSALFL 192
                 L I  I  LAV++VL  +   +  L+ ++ F G+       S LLN L S  +L
Sbjct:   129 ARDLLTIIIISSLAVMFVLTIKMRRLYTLQVLLKFFGL-------SILLNSLFSPTYL 179

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q8EE06 SO_2584 "Membrane zinc metalloprotease" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 132 (51.5 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 49/176 (27%), Positives = 80/176 (45%)

Query:    25 GVFTV-VILALWRT---ILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQ 80
             G+F + ++LAL  T    +  PFK +  + HE SH IA  L+ G V  +Q+  N  G   
Sbjct:    25 GLFIIELMLALLITRIPYISVPFKWLESYFHELSHGIATVLSGGIVSHIQLFPNGAGLCF 84

Query:    81 TRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCXXXXXXXXXXXXQNWTLRGL 140
             ++GG   +I  AGY G++ WG  + L +T     R++                 W    L
Sbjct:    85 SQGGSTIMIGFAGYFGAACWGYIIYLLATWPRGIRVSFAFLGALVVFSGVL---WGRDLL 141

Query:   141 CIGFIVFLAVIWVLQEETSV-RILRYVILFIGICLSCCIFSSLLNELTSALFLISL 195
              +  +V L ++ +L  + S  +IL   +  IG+ +       +LN L S   L+ L
Sbjct:   142 TMAILVVLTIVLLLPLKLSKNKILTQFLRIIGLVI-------MLNALASPTVLLGL 190

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_2584 SO_2584 "hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 132 (51.5 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 49/176 (27%), Positives = 80/176 (45%)

Query:    25 GVFTV-VILALWRT---ILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQ 80
             G+F + ++LAL  T    +  PFK +  + HE SH IA  L+ G V  +Q+  N  G   
Sbjct:    25 GLFIIELMLALLITRIPYISVPFKWLESYFHELSHGIATVLSGGIVSHIQLFPNGAGLCF 84

Query:    81 TRGGIYWLILPAGYLGSSFWGMALVLASTNLTTARIAAGCXXXXXXXXXXXXQNWTLRGL 140
             ++GG   +I  AGY G++ WG  + L +T     R++                 W    L
Sbjct:    85 SQGGSTIMIGFAGYFGAACWGYIIYLLATWPRGIRVSFAFLGALVVFSGVL---WGRDLL 141

Query:   141 CIGFIVFLAVIWVLQEETSV-RILRYVILFIGICLSCCIFSSLLNELTSALFLISL 195
              +  +V L ++ +L  + S  +IL   +  IG+ +       +LN L S   L+ L
Sbjct:   142 TMAILVVLTIVLLLPLKLSKNKILTQFLRIIGLVI-------MLNALASPTVLLGL 190


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.140   0.452    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      218       206   0.00097  111 3  11 22  0.37    32
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  187 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.29u 0.13s 15.42t   Elapsed:  00:00:01
  Total cpu time:  15.29u 0.13s 15.42t   Elapsed:  00:00:01
  Start:  Sat May 11 10:49:53 2013   End:  Sat May 11 10:49:54 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	218
pfam13398	201	pfam13398, Peptidase_M50B, Peptidase M50B-like	7e-33

>gnl|CDD|222102 pfam13398, Peptidase_M50B, Peptidase M50B-like

 Score =  117 bits (295), Expect = 7e-33
 Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 8/153 (5%)

Query: 24  IGVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRG 83
           +    V +L LW   +L PF+L+  F HE  HA+A  LT G V+G+++H +  G T +RG
Sbjct: 1   LIALVVALLLLWPPPILRPFRLLVTFFHELGHALAALLTGGRVKGIELHPDGSGLTVSRG 60

Query: 84  GIY----WLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRG 139
                  +L L AGYLG + WG+ L+L +     AR         L ++L   +N     
Sbjct: 61  RPGGLGMFLTLAAGYLGPALWGLLLILLAFA-GRARALLWLGVALLLVLLLWVRNLFGLL 119

Query: 140 LCIGFIVFLAVIWVLQEETSVRILRYVILFIGI 172
           + +     L  +W L       +L +V+LF+G+
Sbjct: 120 ILLLTGALLLALWWLAPPQ---VLAFVLLFLGV 149

This is a family of bacterial and plant peptidases in the same family as MEROPS:M50B. Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
PF13398	200	Peptidase_M50B: Peptidase M50B-like	100.0
cd06161	208	S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a z	98.17
cd06164	227	S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P),	97.94
cd06163	182	S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (	97.51
cd06160	183	S2P-M50_like_2 Uncharacterized homologs of Site-2	97.42
cd06159	263	S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs	97.3
PF02163	192	Peptidase_M50: Peptidase family M50; InterPro: IPR	97.3
cd05709	180	S2P-M50 Site-2 protease (S2P) class of zinc metall	97.2
cd06162	277	S2P-M50_PDZ_SREBP Sterol regulatory element-bindin	97.02
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	96.25
PRK10779	449	zinc metallopeptidase RseP; Provisional	96.14
KOG2921	484	consensus Intramembrane metalloprotease (sterol-re	94.58
PF01434	213	Peptidase_M41: Peptidase family M41 This is family	93.95
cd06158	181	S2P-M50_like_1 Uncharacterized homologs of Site-2	92.49
PF00413	154	Peptidase_M10: Matrixin This Prosite motif covers	91.36
cd04279	156	ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MM	90.5
cd04268	165	ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_	89.61
cd04278	157	ZnMc_MMP Zinc-dependent metalloprotease, matrix me	89.14
PF01432	458	Peptidase_M3: Peptidase family M3 This Prosite mot	89.1
cd06258	365	Peptidase_M3_like The peptidase M3-like family, al	89.01
cd04277	186	ZnMc_serralysin_like Zinc-dependent metalloproteas	87.4
cd06459	427	M3B_Oligoendopeptidase_F Peptidase family M3B Olig	87.27
PRK10280	681	dipeptidyl carboxypeptidase II; Provisional	87.17
COG0339	683	Dcp Zn-dependent oligopeptidases [Amino acid trans	87.02
CHL00176	638	ftsH cell division protein; Validated	86.41
smart00235	140	ZnMc Zinc-dependent metalloprotease. Neutral zinc	86.32
cd06457	458	M3A_MIP Peptidase M3 mitochondrial intermediate pe	86.09
cd06456	422	M3A_DCP_Oligopeptidase_A Peptidase family M3 dipep	85.65
cd06455	472	M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; P	84.99
PF14247	220	DUF4344: Domain of unknown function (DUF4344)	84.62
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	84.42
cd04327	198	ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MM	84.13
TIGR02290	587	M3_fam_3 oligoendopeptidase, pepF/M3 family. The M	83.36
PF13582	124	Reprolysin_3: Metallo-peptidase family M12B Reprol	83.34
cd00203	167	ZnMc Zinc-dependent metalloprotease. This super-fa	83.22
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	83.1
PF01447	150	Peptidase_M4: Thermolysin metallopeptidase, cataly	83.06
PRK10911	680	oligopeptidase A; Provisional	83.05

>PF13398 Peptidase_M50B: Peptidase M50B-like

Probab=100.00  E-value=3.6e-41  Score=286.57  Aligned_cols=178  Identities=30%  Similarity=0.471  Sum_probs=156.9

Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhCCceeeEEEEcCCCceeEEec--Cc-eeEEeccccchHHHHH
Q 027815           25 GVFTVVILALWRTILLTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRG--GI-YWLILPAGYLGSSFWG  101 (218)
Q Consensus        25 ~~~~v~~~~lW~~~il~Pfrll~t~~HE~GHAlaalltGg~v~~i~l~~d~SG~t~s~G--g~-~~li~~AGY~gp~l~G  101 (218)
                      .++.+++..+|+.++++|||+++|++||+|||++|+++|||+++|+++||+||.|.++|  +. ++++++|||++|+++|
T Consensus         2 i~~~~~l~~~~~~~~~~~~~~l~t~~HE~gHal~a~l~G~~v~~i~l~~~~~G~~~~~~~~~~~~~~i~~aGyl~~~l~g   81 (200)
T PF13398_consen    2 IALIVALLLLWNPPIWYPFRLLVTFVHELGHALAALLTGGRVKGIVLFPDGSGVTVSSGPSGIGRFLIALAGYLGPALFG   81 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEEeCCCceEEEecCCCcchhHHhcccchHHHHHH
Confidence            45578889999999999999999999999999999999999999999999999999998  54 6899999999999999


Q ss_pred             HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HhccchhhHHHHHHHHHHHhhhhhhhhHH
Q 027815          102 MALVLASTNLTTARIAAGCLALALFIVLFIAQNWTLRGLCIGFIVFLAVI-WVLQEETSVRILRYVILFIGICLSCCIFS  180 (218)
Q Consensus       102 ~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~vRn~~g~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~llflGv~~~~ysv~  180 (218)
                      ..+++++++++. +..+.+..+.++.+++++||+++...++.++++..+. ++.++    ..++++++|+|++.++|+++
T Consensus        82 ~~~~~~~~~~~~-~~~l~~~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ig~~~~l~~~~  156 (200)
T PF13398_consen   82 LLLLWLLFSGWA-RAVLFLGLLILLVLLLFVRNWFGILVVILFGALLIALWFFAPP----WILRFILLFIGVFLLLYSVR  156 (200)
T ss_pred             HHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHc
Confidence            999999855555 6666666666777789999999999999996555555 45555    88899999999999999999


Q ss_pred             HHHHHHHhhHHhcCCCCCChHHHHHHHcCCCcc
Q 027815          181 SLLNELTSALFLISLVKRSVANVYSENYRCNEQ  213 (218)
Q Consensus       181 dl~~~~~~~~~~~~~~~~SDA~~LA~lt~~Pa~  213 (218)
                      |+ ||+++     |+.++|||+++||+|++|+.
T Consensus       157 ~i-~~l~~-----~~~~~sDa~~la~lt~~p~~  183 (200)
T PF13398_consen  157 DI-DDLFR-----RRVNASDADQLARLTGLPAW  183 (200)
T ss_pred             CH-HHHhc-----CCCCCChHHHHHHHHCCCHH
Confidence            98 88887     99999999999999999964

>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=98.17  E-value=3.7e-06  Score=71.99  Aligned_cols=64  Identities=22%  Similarity=0.239  Sum_probs=52.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCceeeEEEEcCCCceeEEecC-----ceeEEeccccchHHHHHHHHHHH
Q 027815           43 FKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGG-----IYWLILPAGYLGSSFWGMALVLA  107 (218)
Q Consensus        43 frll~t~~HE~GHAlaalltGg~v~~i~l~~d~SG~t~s~Gg-----~~~li~~AGY~gp~l~G~~l~~~  107 (218)
                      .-.+++.+||+||+++|...|.|+++++++|-++ .+..+..     .++.++.||+....+.+......
T Consensus        36 ~l~~~v~iHElgH~~~A~~~G~~v~~i~l~p~Gg-~~~~~~~~~~~~~~~lIalAGPl~n~~la~~~~~l  104 (208)
T cd06161          36 LLFLSVLLHELGHALVARRYGIRVRSITLLPFGG-VAELEEEPETPKEEFVIALAGPLVSLLLAGLFYLL  104 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCccceEEEeeee-eeeeccCCCChhHheeeeeehHHHHHHHHHHHHHH
Confidence            3567889999999999999999999999999754 4444431     26899999999999998776544

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.

>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=97.94  E-value=3.9e-05  Score=66.77  Aligned_cols=62  Identities=23%  Similarity=0.296  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCceeeEEEEcCCCceeEEecCc-----eeEEeccccchHHHHHHHHHHH
Q 027815           45 LITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGI-----YWLILPAGYLGSSFWGMALVLA  107 (218)
Q Consensus        45 ll~t~~HE~GHAlaalltGg~v~~i~l~~d~SG~t~s~Gg~-----~~li~~AGY~gp~l~G~~l~~~  107 (218)
                      .+..++||+||+++|...|.|+++|++.|= +|.+...+..     ++.++.||.....+.+......
T Consensus        53 ~~~v~iHElgH~~~A~~~G~~v~~i~l~p~-Gg~~~~~~~~~~~~~~~~IalAGPl~Nllla~i~~~l  119 (227)
T cd06164          53 FASVLLHELGHSLVARRYGIPVRSITLFLF-GGVARLEREPETPGQEFVIAIAGPLVSLVLALLFLLL  119 (227)
T ss_pred             HHHHHHHHHHHHHHHHHcCCeECeEEEEee-eEEEEecCCCCCHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999984 6788776532     5899999999999888765544

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha

>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=97.51  E-value=0.00022  Score=60.24  Aligned_cols=25  Identities=36%  Similarity=0.517  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCceeeEE
Q 027815           46 ITVFLHEASHAIACKLTCGDVEGMQ   70 (218)
Q Consensus        46 l~t~~HE~GHAlaalltGg~v~~i~   70 (218)
                      +.+++||+||.++|...|-|++++.
T Consensus        10 ~~v~iHElGH~~~Ar~~Gv~v~~f~   34 (182)
T cd06163          10 ILIFVHELGHFLVAKLFGVKVEEFS   34 (182)
T ss_pred             HHHHHHHHHHHHHHHHcCCeeeEee
Confidence            4688999999999999999999843

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.

>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=97.42  E-value=0.00027  Score=59.80  Aligned_cols=64  Identities=17%  Similarity=0.128  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCceeeEEEEcC-----CCceeEEecC-----ceeEEeccccchHHHHHHHHHHH
Q 027815           44 KLITVFLHEASHAIACKLTCGDVEGMQVHAN-----EGGATQTRGG-----IYWLILPAGYLGSSFWGMALVLA  107 (218)
Q Consensus        44 rll~t~~HE~GHAlaalltGg~v~~i~l~~d-----~SG~t~s~Gg-----~~~li~~AGY~gp~l~G~~l~~~  107 (218)
                      -......||+||+++|...|-|.+++++.|+     -++.+..++.     .+..++.||.....+.+......
T Consensus        40 l~~~l~iHElgH~~~A~~~G~~~~~~~l~P~~~~G~~G~~~~~~~~~~~~~~~~~IalAGPl~nl~lali~~~~  113 (183)
T cd06160          40 LLAILGIHEMGHYLAARRHGVKASLPYFIPFPFIGTFGAFIRMRSPIPNRKALFDIALAGPLAGLLLALPVLII  113 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCccceeeeehHhcCcEEEEEEecCCCCChhHhehhhhhHHHHHHHHHHHHHHH
Confidence            4567789999999999999999999999998     6777665542     15899999999888777555443

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.

>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=97.30  E-value=0.00025  Score=63.26  Aligned_cols=63  Identities=19%  Similarity=0.221  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCceeeEEE-----------EcCCCceeEEecCceeEEeccccchHHHHHHHHHHH
Q 027815           45 LITVFLHEASHAIACKLTCGDVEGMQV-----------HANEGGATQTRGGIYWLILPAGYLGSSFWGMALVLA  107 (218)
Q Consensus        45 ll~t~~HE~GHAlaalltGg~v~~i~l-----------~~d~SG~t~s~Gg~~~li~~AGY~gp~l~G~~l~~~  107 (218)
                      .++..+||+||+++|...|.+++++.+           .+|+......+-+.+..++.||.....+.+......
T Consensus       118 ~isv~iHElgHa~~Ar~~G~~V~~iGl~l~~ip~Gg~v~~~~~~~~~~~~~~~~~Ia~AGP~~Nlvla~i~~~l  191 (263)
T cd06159         118 VVGVVVHELSHGILARVEGIKVKSGGLLLLIIPPGAFVEPDEEELNKADRRIRLRIFAAGVTANFVVALIAFAL  191 (263)
T ss_pred             HHHHHHHHHHHHHHHHHcCCEECchhHHHHhhhcEEEEEecchhhccCChhheeeeeeehHHHHHHHHHHHHHH
Confidence            456889999999999999999999764           223221111111237899999999988777655433

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.

>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.30  E-value=0.00014  Score=60.45  Aligned_cols=29  Identities=34%  Similarity=0.475  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCceeeEEEEc
Q 027815           45 LITVFLHEASHAIACKLTCGDVEGMQVHA   73 (218)
Q Consensus        45 ll~t~~HE~GHAlaalltGg~v~~i~l~~   73 (218)
                      .+.+.+||+||+++|...|.|+.+++...
T Consensus         7 ~i~i~~HE~gH~~~a~~~G~~~~~~~~~~   35 (192)
T PF02163_consen    7 LISIVLHELGHALAARLYGDKVPRFEGGF   35 (192)
T ss_dssp             HHHHHHHHHHHHHHHHTTT--B--EEE--
T ss_pred             ccccccccccccccccccccccccccccc
Confidence            46788999999999999999999997553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.

>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=97.20  E-value=0.00023  Score=58.85  Aligned_cols=63  Identities=27%  Similarity=0.338  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCceeeEEEEc--------CC--------CceeEEec---------C-ceeEEeccccchHH
Q 027815           45 LITVFLHEASHAIACKLTCGDVEGMQVHA--------NE--------GGATQTRG---------G-IYWLILPAGYLGSS   98 (218)
Q Consensus        45 ll~t~~HE~GHAlaalltGg~v~~i~l~~--------d~--------SG~t~s~G---------g-~~~li~~AGY~gp~   98 (218)
                      .+++..||+||+++|...|.|++++.+..        |.        +|.+...+         + .+..+..||.....
T Consensus         8 ~i~i~iHE~gH~~~A~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ip~gG~~~~~~~~~~~~~~~~~~~~~i~laGPl~nl   87 (180)
T cd05709           8 LISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPLGGYAKPVGENPRAFKKPRWQRLLVALAGPLANL   87 (180)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCchheeeeEEECCcCCCCEehHHHHhccCeeccCCCChhhhccchhhhhhhhhhhHHHHH
Confidence            45788999999999999999887666543        32        34443332         1 15788888888888


Q ss_pred             HHHHHHHHH
Q 027815           99 FWGMALVLA  107 (218)
Q Consensus        99 l~G~~l~~~  107 (218)
                      +.+......
T Consensus        88 lla~i~~~~   96 (180)
T cd05709          88 LLALLLLLL   96 (180)
T ss_pred             HHHHHHHHH
Confidence            888665544

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin

>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism

Probab=97.02  E-value=0.0011  Score=59.71  Aligned_cols=62  Identities=23%  Similarity=0.177  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCceeeEEEEcC---CCceeEEe--------cCceeEEeccccchHHHHHHHHHH
Q 027815           45 LITVFLHEASHAIACKLTCGDVEGMQVHAN---EGGATQTR--------GGIYWLILPAGYLGSSFWGMALVL  106 (218)
Q Consensus        45 ll~t~~HE~GHAlaalltGg~v~~i~l~~d---~SG~t~s~--------Gg~~~li~~AGY~gp~l~G~~l~~  106 (218)
                      .++..+||+|||++|...|-+++++.+.+=   .+|.+.-.        .+.+..++.||.....+.+.....
T Consensus       135 ~isvvvHElgHal~A~~~gi~V~~iGl~l~~~~pGa~ve~~~e~~~~~~~~~~l~Ia~AGp~~NlvLa~i~~~  207 (277)
T cd06162         135 LISGVVHEMGHGVAAVREQVRVNGFGIFFFIIYPGAYVDLFTDHLNLISPVQQLRIFCAGVWHNFVLGLVGYL  207 (277)
T ss_pred             HHHHHHHHHHHHHHHHHcCCeeceEEEeeeeccCeeEEeecccccccCChhhhhheehhhHHHHHHHHHHHHH
Confidence            557889999999999999999999886532   24555542        122678999999999888876543

In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.

>TIGR00054 RIP metalloprotease RseP

Probab=96.25  E-value=0.006  Score=57.47  Aligned_cols=27  Identities=30%  Similarity=0.517  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCceeeEEE
Q 027815           45 LITVFLHEASHAIACKLTCGDVEGMQV   71 (218)
Q Consensus        45 ll~t~~HE~GHAlaalltGg~v~~i~l   71 (218)
                      .+.+++||+||.++|..+|-|++++.+
T Consensus        14 ~~~v~~HE~gH~~~a~~~g~~v~~Fsi   40 (420)
T TIGR00054        14 AVLIFVHELGHFLAARLCGIKVERFSI   40 (420)
T ss_pred             HHHHHHHhHHHHHHHHHcCCEEEEEEE
Confidence            356889999999999999999996544

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=96.14  E-value=0.019  Score=54.54  Aligned_cols=28  Identities=18%  Similarity=0.196  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCceeeEEEEc
Q 027815           46 ITVFLHEASHAIACKLTCGDVEGMQVHA   73 (218)
Q Consensus        46 l~t~~HE~GHAlaalltGg~v~~i~l~~   73 (218)
                      +.+++||+||-++|-++|=||+++.+-.
T Consensus        16 ~li~vHElGHfl~Ar~~gv~V~~FsiGf   43 (449)
T PRK10779         16 VLITVHEFGHFWVARRCGVRVERFSIGF   43 (449)
T ss_pred             HHHHHHHHHHHHHHHHcCCeeeEEEeec
Confidence            3578999999999999999999999876

>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]

Probab=94.58  E-value=0.035  Score=52.34  Aligned_cols=28  Identities=36%  Similarity=0.525  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCceeeEEEE
Q 027815           45 LITVFLHEASHAIACKLTCGDVEGMQVH   72 (218)
Q Consensus        45 ll~t~~HE~GHAlaalltGg~v~~i~l~   72 (218)
                      ++..-+||+|||+||.--|=+++++-|+
T Consensus       131 vi~~vvHElGHalAA~segV~vngfgIf  158 (484)
T KOG2921|consen  131 VITVVVHELGHALAAASEGVQVNGFGIF  158 (484)
T ss_pred             HHHHHHHHhhHHHHHHhcCceeeeeEEE
Confidence            4556799999999999999999888766

>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification

Probab=93.95  E-value=0.048  Score=46.76  Aligned_cols=36  Identities=28%  Similarity=0.258  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHhC--CceeeEEEEcCC--CceeEE
Q 027815           46 ITVFLHEASHAIACKLTC--GDVEGMQVHANE--GGATQT   81 (218)
Q Consensus        46 l~t~~HE~GHAlaalltG--g~v~~i~l~~d~--SG~t~s   81 (218)
                      =-+..||.|||+++.+++  ..+..+.|.|.+  .|.|..
T Consensus        29 ~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~   68 (213)
T PF01434_consen   29 RRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQF   68 (213)
T ss_dssp             HHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEE
T ss_pred             HHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEe
Confidence            456899999999999998  479999998865  445544

; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....

>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=92.49  E-value=0.13  Score=43.27  Aligned_cols=61  Identities=18%  Similarity=0.200  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCcee----eEEEEc----CC-------------CceeEEec-------C---ceeEEeccc
Q 027815           45 LITVFLHEASHAIACKLTCGDVE----GMQVHA----NE-------------GGATQTRG-------G---IYWLILPAG   93 (218)
Q Consensus        45 ll~t~~HE~GHAlaalltGg~v~----~i~l~~----d~-------------SG~t~s~G-------g---~~~li~~AG   93 (218)
                      .++...||.+||++|...|.+-.    +++++|    |-             .|.+.-..       +   .+.+++.||
T Consensus         9 ~~~i~~HE~aHa~~A~~~Gd~t~~~~Grltlnp~~hid~~g~l~~~~~~~~~~G~a~p~~~~~~~~~~~r~~~~~valAG   88 (181)
T cd06158           9 LLAITLHEFAHAYVAYRLGDPTARRAGRLTLNPLAHIDPIGTIILPLLLPFLFGWAKPVPVNPRNFKNPRRGMLLVSLAG   88 (181)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHcCceecCcHHhcCcchHHHHHHHHHhCeEEecccccChHhhcccHhhHhhhhhhh
Confidence            45678999999999999998765    466655    21             22221111       0   146788888


Q ss_pred             cchHHHHHHHHH
Q 027815           94 YLGSSFWGMALV  105 (218)
Q Consensus        94 Y~gp~l~G~~l~  105 (218)
                      .....+.+....
T Consensus        89 P~~n~~la~i~~  100 (181)
T cd06158          89 PLSNLLLALLFA  100 (181)
T ss_pred             HHHHHHHHHHHH
Confidence            887777775543

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.

>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site

Probab=91.36  E-value=0.12  Score=41.01  Aligned_cols=17  Identities=35%  Similarity=0.495  Sum_probs=13.9

Q ss_pred             hhhHHHHHHHHHHHHHH
Q 027815           41 TPFKLITVFLHEASHAI   57 (218)
Q Consensus        41 ~Pfrll~t~~HE~GHAl   57 (218)
                      .+.-+..|+.||+|||+
T Consensus       101 ~~~~~~~v~~HEiGHaL  117 (154)
T PF00413_consen  101 SGNDLQSVAIHEIGHAL  117 (154)
T ss_dssp             SSEEHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhhhcccccc
Confidence            34467789999999997

; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....

>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1

Probab=90.50  E-value=0.15  Score=41.07  Aligned_cols=17  Identities=35%  Similarity=0.495  Sum_probs=14.3

Q ss_pred             hhHHHHHHHHHHHHHHH
Q 027815           42 PFKLITVFLHEASHAIA   58 (218)
Q Consensus        42 Pfrll~t~~HE~GHAla   58 (218)
                      ...+..|+.||+||++-
T Consensus       101 ~~~~~~~~~HEiGHaLG  117 (156)
T cd04279         101 AENLQAIALHELGHALG  117 (156)
T ss_pred             chHHHHHHHHHhhhhhc
Confidence            34688999999999974

A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.

>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily

Probab=89.61  E-value=0.21  Score=40.06  Aligned_cols=15  Identities=33%  Similarity=0.450  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHH
Q 027815           44 KLITVFLHEASHAIA   58 (218)
Q Consensus        44 rll~t~~HE~GHAla   58 (218)
                      ....|+.||+|||+-
T Consensus        93 ~~~~~~~HEiGHaLG  107 (165)
T cd04268          93 RLRNTAEHELGHALG  107 (165)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            367999999999974

This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.

>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family

Probab=89.14  E-value=0.17  Score=40.92  Aligned_cols=17  Identities=35%  Similarity=0.440  Sum_probs=14.4

Q ss_pred             hhhHHHHHHHHHHHHHH
Q 027815           41 TPFKLITVFLHEASHAI   57 (218)
Q Consensus        41 ~Pfrll~t~~HE~GHAl   57 (218)
                      .+..+..|+.||+|||+
T Consensus       103 ~~~~~~~~~~HEiGHaL  119 (157)
T cd04278         103 GGTDLFSVAAHEIGHAL  119 (157)
T ss_pred             ccchHHHHHHHHhcccc
Confidence            34578999999999996

MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).

>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site

Probab=89.10  E-value=0.35  Score=45.57  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=20.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCce
Q 027815           43 FKLITVFLHEASHAIACKLTCGDV   66 (218)
Q Consensus        43 frll~t~~HE~GHAlaalltGg~v   66 (218)
                      .+-+.|++||+|||+=.+++..+.
T Consensus       240 ~~~v~tLfHE~GHa~H~~ls~~~~  263 (458)
T PF01432_consen  240 HDDVETLFHEFGHAMHSLLSRTKY  263 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             hhhHHHHHHHHhHHHHHHHhcccc
Confidence            356899999999999999987654

This family belongs to family M3 of the peptidase classification.; InterPro: IPR001567 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M3 (clan MA(E)), subfamilies M3A and M3B. The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The Thimet oligopeptidase family, is a large family of archaeal, bacterial and eukaryotic oligopeptidases that cleave medium sized peptides. The group contains: mitochondrial intermediate peptidase (3.4.24.59 from EC) Neurolysin, mitochondrial precursor, (3.4.24.16 from EC) Thimet oligopeptidase (3.4.24.15 from EC) Dipeptidyl carboxypeptidase (3.4.15.5 from EC) Oligopeptidase A (3.4.24.70 from EC) Oligoendopeptidase F ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QR4_B 3CE2_A 1Y79_1 2H1J_A 2H1N_A 2O36_A 1S4B_P 2O3E_A 1I1I_P.

>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases

Probab=89.01  E-value=0.25  Score=45.05  Aligned_cols=30  Identities=23%  Similarity=0.182  Sum_probs=23.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhCCceee
Q 027815           39 LLTPFKLITVFLHEASHAIACKLTCGDVEG   68 (218)
Q Consensus        39 il~Pfrll~t~~HE~GHAlaalltGg~v~~   68 (218)
                      .+--+.-+.|++||+|||+=.+++-.+...
T Consensus       148 ~ll~~~~v~tl~HE~GHa~h~~l~~~~~~~  177 (365)
T cd06258         148 VLLGHDDINTLFHEFGHAVHFLLIQQRYPF  177 (365)
T ss_pred             CcCCHHHHHHHHHHHhHHHHHHHhcCCCCc
Confidence            344678999999999999998888665443

The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig

>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily

Probab=87.40  E-value=0.3  Score=40.49  Aligned_cols=14  Identities=29%  Similarity=0.468  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHH
Q 027815           45 LITVFLHEASHAIA   58 (218)
Q Consensus        45 ll~t~~HE~GHAla   58 (218)
                      ...|+.||+|||+-
T Consensus       113 ~~~t~~HEiGHaLG  126 (186)
T cd04277         113 GYQTIIHEIGHALG  126 (186)
T ss_pred             hHHHHHHHHHHHhc
Confidence            57899999999984

Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.

>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3

Probab=87.27  E-value=0.33  Score=44.73  Aligned_cols=23  Identities=22%  Similarity=0.261  Sum_probs=19.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhC
Q 027815           41 TPFKLITVFLHEASHAIACKLTC   63 (218)
Q Consensus        41 ~Pfrll~t~~HE~GHAlaalltG   63 (218)
                      ..++-+.|++||+|||+=..++.
T Consensus       218 ~~~~~v~tl~HE~GHa~h~~~~~  240 (427)
T cd06459         218 GTLDDVFTLAHELGHAFHSYLSR  240 (427)
T ss_pred             CChhhHHHHHHHhhHHHHHHHHc
Confidence            35788999999999999888875

4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.

>PRK10280 dipeptidyl carboxypeptidase II; Provisional

Probab=87.17  E-value=0.42  Score=48.08  Aligned_cols=28  Identities=14%  Similarity=0.175  Sum_probs=22.3

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhCCc
Q 027815           38 ILLTPFKLITVFLHEASHAIACKLTCGD   65 (218)
Q Consensus        38 ~il~Pfrll~t~~HE~GHAlaalltGg~   65 (218)
                      |-+-=..-+.|+|||+|||+=.+++--+
T Consensus       457 p~LL~~~eV~TlFHEfGHalH~lls~~~  484 (681)
T PRK10280        457 PALLLWDDVITLFHEFGHTLHGLFARQR  484 (681)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3344457899999999999999998544

>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism]

Probab=87.02  E-value=0.39  Score=48.10  Aligned_cols=35  Identities=23%  Similarity=0.277  Sum_probs=25.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhCCceeeEEEEcCCCceeE
Q 027815           40 LTPFKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQ   80 (218)
Q Consensus        40 l~Pfrll~t~~HE~GHAlaalltGg~v~~i~l~~d~SG~t~   80 (218)
                      +.-+.-+.|+||||||++=.+++--+.      ++-||.-+
T Consensus       462 Lls~dEV~TLFHEfGHgLH~mlt~v~~------~~vsGt~v  496 (683)
T COG0339         462 LLSHDEVTTLFHEFGHGLHHLLTRVKY------PGVSGTNV  496 (683)
T ss_pred             eeeHHHHHHHHHHhhhHHHHHhhcCCc------cccCCCCC
Confidence            334567899999999999999986553      34456553

>CHL00176 ftsH cell division protein; Validated

Probab=86.41  E-value=0.88  Score=45.47  Aligned_cols=38  Identities=24%  Similarity=0.197  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHhC--CceeeEEEEcC--CCceeEEe
Q 027815           45 LITVFLHEASHAIACKLTC--GDVEGMQVHAN--EGGATQTR   82 (218)
Q Consensus        45 ll~t~~HE~GHAlaalltG--g~v~~i~l~~d--~SG~t~s~   82 (218)
                      --.+..||.|||+++.+.+  ..++.+.|.|.  ..|.|...
T Consensus       438 ~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~  479 (638)
T CHL00176        438 KRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFT  479 (638)
T ss_pred             HHHHHHHhhhhHHHHhhccCCCceEEEEEeecCCCCCceEec
Confidence            3457999999999998764  67999999887  45666554

>smart00235 ZnMc Zinc-dependent metalloprotease

Probab=86.32  E-value=0.35  Score=38.05  Aligned_cols=12  Identities=42%  Similarity=0.537  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHH
Q 027815           47 TVFLHEASHAIA   58 (218)
Q Consensus        47 ~t~~HE~GHAla   58 (218)
                      .|+.||+|||+-
T Consensus        88 ~~~~HEigHaLG   99 (140)
T smart00235       88 GVAAHELGHALG   99 (140)
T ss_pred             ccHHHHHHHHhc
Confidence            489999999983

Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.

>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3

Probab=86.09  E-value=0.62  Score=44.40  Aligned_cols=27  Identities=22%  Similarity=0.288  Sum_probs=22.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhCCc
Q 027815           39 LLTPFKLITVFLHEASHAIACKLTCGD   65 (218)
Q Consensus        39 il~Pfrll~t~~HE~GHAlaalltGg~   65 (218)
                      -+-=+.-+.|++||+|||+=.+++-.+
T Consensus       242 ~lL~~~~v~TLfHEfGHalH~~ls~~~  268 (458)
T cd06457         242 TLLSPHEVETLFHEMGHAMHSMLGRTE  268 (458)
T ss_pred             CCcCHHHHHHHHHHHhHHHHHHHcCCC
Confidence            344567899999999999999999665

4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbo

>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3

Probab=85.65  E-value=0.66  Score=43.92  Aligned_cols=28  Identities=25%  Similarity=0.314  Sum_probs=22.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCceeeE
Q 027815           42 PFKLITVFLHEASHAIACKLTCGDVEGM   69 (218)
Q Consensus        42 Pfrll~t~~HE~GHAlaalltGg~v~~i   69 (218)
                      =+.-+.|++||+|||+=.+++..+...+
T Consensus       205 ~~~~v~tLfHEfGHalH~~ls~~~~~~l  232 (422)
T cd06456         205 THDEVTTLFHEFGHALHHLLTDVEYPSL  232 (422)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            5688999999999999999987554433

4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from E. coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). Oligopeptidase A (OpdA) may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala.

>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24

Probab=84.99  E-value=0.76  Score=43.88  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=21.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCce
Q 027815           43 FKLITVFLHEASHAIACKLTCGDV   66 (218)
Q Consensus        43 frll~t~~HE~GHAlaalltGg~v   66 (218)
                      ++-+.|++||+|||+=.+++..+-
T Consensus       261 ~~~V~TLfHEfGHalH~~ls~~~~  284 (472)
T cd06455         261 HDEVETFFHEFGHVIHHLLGRTKY  284 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCc
Confidence            799999999999999999987653

15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom

>PF14247 DUF4344: Domain of unknown function (DUF4344)

Probab=84.62  E-value=0.76  Score=40.14  Aligned_cols=18  Identities=28%  Similarity=0.477  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 027815           44 KLITVFLHEASHAIACKL   61 (218)
Q Consensus        44 rll~t~~HE~GHAlaall   61 (218)
                      ..+-|+.||+|||+...+
T Consensus        91 ~~~~~l~HE~GHAlI~~~  108 (220)
T PF14247_consen   91 NVLFTLYHELGHALIDDL  108 (220)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            457799999999999874

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=84.42  E-value=1.4  Score=44.02  Aligned_cols=31  Identities=26%  Similarity=0.276  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHhC--CceeeEEEEcCCC
Q 027815           46 ITVFLHEASHAIACKLTC--GDVEGMQVHANEG   76 (218)
Q Consensus        46 l~t~~HE~GHAlaalltG--g~v~~i~l~~d~S   76 (218)
                      -.+..||.|||+++.+..  ..++.+.|-|.++
T Consensus       409 ~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~  441 (644)
T PRK10733        409 ESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGR  441 (644)
T ss_pred             HHHHHHHHHHHHHHHHccCCCceeEEEEeccCC
Confidence            568999999999998875  6689999977654

>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3

Probab=84.13  E-value=0.61  Score=39.34  Aligned_cols=14  Identities=43%  Similarity=0.641  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHH
Q 027815           45 LITVFLHEASHAIA   58 (218)
Q Consensus        45 ll~t~~HE~GHAla   58 (218)
                      ...|+.||+|||+-
T Consensus        92 ~~~~i~HElgHaLG  105 (198)
T cd04327          92 FSRVVLHEFGHALG  105 (198)
T ss_pred             HHHHHHHHHHHHhc
Confidence            35799999999984

A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.

>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family

Probab=83.36  E-value=0.64  Score=45.52  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=18.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHh
Q 027815           42 PFKLITVFLHEASHAIACKLT   62 (218)
Q Consensus        42 Pfrll~t~~HE~GHAlaallt   62 (218)
                      .++-+.|++||+|||+=..++
T Consensus       372 ~~~~v~TL~HE~GHa~H~~ls  392 (587)
T TIGR02290       372 SRRDVSTLAHELGHAYHSELA  392 (587)
T ss_pred             CchhHHHHHHHhhHHHHHHHH
Confidence            468899999999999988877

The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.

>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C

Probab=83.34  E-value=0.6  Score=35.72  Aligned_cols=12  Identities=33%  Similarity=0.739  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHH
Q 027815           46 ITVFLHEASHAI   57 (218)
Q Consensus        46 l~t~~HE~GHAl   57 (218)
                      ..|+.||+||.+
T Consensus       108 ~~~~~HEiGH~l  119 (124)
T PF13582_consen  108 VDTFAHEIGHNL  119 (124)
T ss_dssp             TTHHHHHHHHHT
T ss_pred             ceEeeehhhHhc
Confidence            489999999986

>cd00203 ZnMc Zinc-dependent metalloprotease

Probab=83.22  E-value=0.6  Score=37.32  Aligned_cols=16  Identities=25%  Similarity=0.324  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHH
Q 027815           44 KLITVFLHEASHAIAC   59 (218)
Q Consensus        44 rll~t~~HE~GHAlaa   59 (218)
                      ....|+.||+||++--
T Consensus        95 ~~~~~~~HElGH~LGl  110 (167)
T cd00203          95 EGAQTIAHELGHALGF  110 (167)
T ss_pred             cchhhHHHHHHHHhCC
Confidence            5688999999999853

This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=83.10  E-value=1.7  Score=41.69  Aligned_cols=41  Identities=27%  Similarity=0.203  Sum_probs=30.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHh--CCceeeEEEEcCC--CceeEE
Q 027815           41 TPFKLITVFLHEASHAIACKLT--CGDVEGMQVHANE--GGATQT   81 (218)
Q Consensus        41 ~Pfrll~t~~HE~GHAlaallt--Gg~v~~i~l~~d~--SG~t~s   81 (218)
                      .|-..--+..||.|||+++.+.  +.+++.+.|.|.+  .|.+..
T Consensus       307 ~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G~~~~  351 (495)
T TIGR01241       307 SEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPRGQALGYTQF  351 (495)
T ss_pred             cHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeecCCccceEEe
Confidence            3444456899999999999988  5789999998754  455543

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site

Probab=83.06  E-value=0.89  Score=37.30  Aligned_cols=20  Identities=30%  Similarity=0.703  Sum_probs=16.6

Q ss_pred             hhhhhHH-HHHHHHHHHHHHH
Q 027815           39 LLTPFKL-ITVFLHEASHAIA   58 (218)
Q Consensus        39 il~Pfrl-l~t~~HE~GHAla   58 (218)
                      ..+||.- +.+..||++|++.
T Consensus       128 ~f~~~~~~lDVvaHEltHGVt  148 (150)
T PF01447_consen  128 IFKPFASSLDVVAHELTHGVT  148 (150)
T ss_dssp             SBS-GGG-HHHHHHHHHHHHH
T ss_pred             ccccCccccceeeeccccccc
Confidence            4678887 9999999999985

This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....

>PRK10911 oligopeptidase A; Provisional

Probab=83.05  E-value=0.9  Score=45.66  Aligned_cols=21  Identities=24%  Similarity=0.349  Sum_probs=19.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC
Q 027815           43 FKLITVFLHEASHAIACKLTC   63 (218)
Q Consensus        43 frll~t~~HE~GHAlaalltG   63 (218)
                      +.-+.|++||+|||+=.+++-
T Consensus       461 ~~~v~tlfHEfGHalH~~ls~  481 (680)
T PRK10911        461 HDEVITLFHEFGHGLHHMLTR  481 (680)
T ss_pred             HHHHHHHHHHHhHHHHHHHhC
Confidence            488999999999999999885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	218
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	97.32
2di4_A	238	Zinc protease, cell division protein FTSH homolog;	95.25
2jsd_A	160	Matrix metalloproteinase-20; MMP-NNGH, structural	89.3
2xs4_A	167	Karilysin protease; hydrolase, bacterial MMP, viru	88.77
2ovx_A	159	Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9)	88.27
1hy7_A	173	Stromelysin-1, MMP-3; mixed alpha beta structure,	87.89
1cge_A	168	Fibroblast collagenase; hydrolase (metalloprotease	87.26
2o36_A	674	ThiMet oligopeptidase; thermolysin-like domain, su	85.78
2o3e_A	678	Neurolysin; thermolysin-like domain, substrate-bin	85.57
1hv5_A	165	Stromelysin 3; inhibition, phosphinic inhibitor, h	85.39
1i76_A	163	MMP-8;, neutrophil collagenase; hydrolase, complex	84.79
1y79_1	680	Peptidyl-dipeptidase DCP; hinge bending, carboxype	84.66
3ahn_A	564	Oligopeptidase, PZ peptidase A; hydrolase, hydrola	84.26
3sks_A	567	Putative oligoendopeptidase F; structural genomics	83.16
1slm_A	255	Stromelysin-1; hydrolase, metalloprotease, fibrobl	82.53
1y93_A	159	Macrophage metalloelastase; matrix metalloproteina	80.47
2qr4_A	587	Peptidase M3B, oligoendopeptidase F; structural ge	80.03

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}

Probab=97.32  E-value=8.3e-05  Score=63.33  Aligned_cols=64  Identities=25%  Similarity=0.243  Sum_probs=51.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCceeeEEEEcCCCceeEEecCc---eeEEeccccchHHHHHHHHHHH
Q 027815           43 FKLITVFLHEASHAIACKLTCGDVEGMQVHANEGGATQTRGGI---YWLILPAGYLGSSFWGMALVLA  107 (218)
Q Consensus        43 frll~t~~HE~GHAlaalltGg~v~~i~l~~d~SG~t~s~Gg~---~~li~~AGY~gp~l~G~~l~~~  107 (218)
                      .-.++..+||+||+++|...|.+++++++.|= +|.+.....+   ++.++.||.....+.+..+...
T Consensus        46 ~l~~~v~~HElgH~~~A~~~G~~~~~i~l~p~-Gg~~~~~~~~~~~~~~ValAGPl~nl~la~~~~~~  112 (224)
T 3b4r_A           46 LLFVSVVLHELGHSYVAKKYGVKIEKILLLPI-GGVAMMDKIPKEGELRIGIAGPLVSFIIGIVLLIV  112 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCCEEECSS-SCBCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCccccEEEEEe-eeEEEcccCCccceeeeeeeHHHHHHHHHHHHHHH
Confidence            34677889999999999999999999999984 4666544322   5899999999999988776554

>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1

Probab=95.25  E-value=0.0074  Score=51.85  Aligned_cols=34  Identities=21%  Similarity=0.296  Sum_probs=26.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhC--CceeeEEEEcCC
Q 027815           42 PFKLITVFLHEASHAIACKLTC--GDVEGMQVHANE   75 (218)
Q Consensus        42 Pfrll~t~~HE~GHAlaalltG--g~v~~i~l~~d~   75 (218)
                      |=.--.|..||.|||++|.++.  ..|+.+.|-|.+
T Consensus        13 ~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG   48 (238)
T 2di4_A           13 PKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRG   48 (238)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecC
Confidence            3344468899999999999998  789999999874

>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}

Probab=89.30  E-value=0.16  Score=39.97  Aligned_cols=14  Identities=50%  Similarity=0.646  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHH
Q 027815           44 KLITVFLHEASHAI   57 (218)
Q Consensus        44 rll~t~~HE~GHAl   57 (218)
                      ....|+.||+|||+
T Consensus       107 ~~~~v~~HEiGHaL  120 (160)
T 2jsd_A          107 NLFTVAAHEFGHAL  120 (160)
T ss_dssp             EHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhHhhh
Confidence            46789999999997

>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A

Probab=88.77  E-value=0.18  Score=40.10  Aligned_cols=15  Identities=47%  Similarity=0.627  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHH
Q 027815           44 KLITVFLHEASHAIA   58 (218)
Q Consensus        44 rll~t~~HE~GHAla   58 (218)
                      .+..|+.||+||++-
T Consensus       114 ~~~~v~~HEiGHaLG  128 (167)
T 2xs4_A          114 DLITVAAHEIGHLLG  128 (167)
T ss_dssp             EHHHHHHHHHHHHHT
T ss_pred             chhhhHHHHHHHhhc
Confidence            567999999999973

>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*

Probab=88.27  E-value=0.18  Score=40.00  Aligned_cols=14  Identities=36%  Similarity=0.494  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHH
Q 027815           44 KLITVFLHEASHAI   57 (218)
Q Consensus        44 rll~t~~HE~GHAl   57 (218)
                      .+..|+.||+|||+
T Consensus       110 ~~~~va~HEiGHaL  123 (159)
T 2ovx_A          110 SLFLVAAHQFGHAL  123 (159)
T ss_dssp             EHHHHHHHHHHHHT
T ss_pred             chhhhhhhhhhhhh
Confidence            46789999999997

>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...

Probab=87.89  E-value=0.22  Score=39.91  Aligned_cols=15  Identities=33%  Similarity=0.534  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHH
Q 027815           44 KLITVFLHEASHAIA   58 (218)
Q Consensus        44 rll~t~~HE~GHAla   58 (218)
                      .+..|+.||+|||+-
T Consensus       112 ~~~~v~~HEiGHaLG  126 (173)
T 1hy7_A          112 NLFLVAAHEIGHSLG  126 (173)
T ss_dssp             EHHHHHHHHHHHHHT
T ss_pred             hhhhhHHHHHHHhhc
Confidence            467899999999973

>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A

Probab=87.26  E-value=0.22  Score=39.74  Aligned_cols=15  Identities=33%  Similarity=0.479  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHH
Q 027815           44 KLITVFLHEASHAIA   58 (218)
Q Consensus        44 rll~t~~HE~GHAla   58 (218)
                      .+..|+.||+|||+-
T Consensus       110 ~~~~v~~HEiGHaLG  124 (168)
T 1cge_A          110 NLHRVAAHELGHSLG  124 (168)
T ss_dssp             BHHHHHHHHHHHHTT
T ss_pred             chhhhhhhHhHhhhc
Confidence            367899999999973

>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P

Probab=85.78  E-value=0.43  Score=46.12  Aligned_cols=24  Identities=13%  Similarity=0.268  Sum_probs=20.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCc
Q 027815           42 PFKLITVFLHEASHAIACKLTCGD   65 (218)
Q Consensus        42 Pfrll~t~~HE~GHAlaalltGg~   65 (218)
                      =++-+.|++||+|||+=.+++..+
T Consensus       449 t~~dV~TLfHE~GHalH~~ls~~~  472 (674)
T 2o36_A          449 QHDEVRTYFHEFGHVMHQLCSQAE  472 (674)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCC
Confidence            457899999999999999988643

>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel, hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P

Probab=85.57  E-value=0.41  Score=46.27  Aligned_cols=24  Identities=17%  Similarity=0.253  Sum_probs=20.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCc
Q 027815           42 PFKLITVFLHEASHAIACKLTCGD   65 (218)
Q Consensus        42 Pfrll~t~~HE~GHAlaalltGg~   65 (218)
                      =+.-+.|++||+|||+=.+++..+
T Consensus       465 t~~dV~TLfHE~GHalH~~ls~~~  488 (678)
T 2o3e_A          465 RHDEVETYFHEFGHVMHQICAQTD  488 (678)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCBS
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCC
Confidence            457899999999999999988643

>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11

Probab=85.39  E-value=0.32  Score=38.64  Aligned_cols=15  Identities=33%  Similarity=0.541  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHH
Q 027815           44 KLITVFLHEASHAIA   58 (218)
Q Consensus        44 rll~t~~HE~GHAla   58 (218)
                      .+..|+.||+||++-
T Consensus       112 ~~~~v~~HEiGHaLG  126 (165)
T 1hv5_A          112 DLLQVAAHEFGHVLG  126 (165)
T ss_dssp             EHHHHHHHHHHHHTT
T ss_pred             hhhhhHHHHhHhhhC
Confidence            468899999999973

>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...

Probab=84.79  E-value=0.4  Score=38.08  Aligned_cols=15  Identities=33%  Similarity=0.501  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHH
Q 027815           44 KLITVFLHEASHAIA   58 (218)
Q Consensus        44 rll~t~~HE~GHAla   58 (218)
                      .+..|+.||+||++-
T Consensus       111 ~~~~v~~HE~GHalG  125 (163)
T 1i76_A          111 NLFLVAAHEFGHSLG  125 (163)
T ss_dssp             BHHHHHHHHHHHHHT
T ss_pred             hhhhhhHHHhhhhhc
Confidence            468899999999973

>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase, neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia coli}

Probab=84.66  E-value=0.44  Score=46.15  Aligned_cols=24  Identities=13%  Similarity=0.218  Sum_probs=20.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCc
Q 027815           42 PFKLITVFLHEASHAIACKLTCGD   65 (218)
Q Consensus        42 Pfrll~t~~HE~GHAlaalltGg~   65 (218)
                      =++-+.|++||+|||+=.+++..+
T Consensus       460 t~~dV~TLfHE~GHalH~~ls~~~  483 (680)
T 1y79_1          460 LWDDVITLFHEFGHTLHGLFARQR  483 (680)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCC
Confidence            467899999999999999988544

>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB: 3ahm_A* 3aho_A* 2h1n_A 2h1j_A

Probab=84.26  E-value=0.52  Score=44.15  Aligned_cols=21  Identities=33%  Similarity=0.259  Sum_probs=18.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC
Q 027815           43 FKLITVFLHEASHAIACKLTC   63 (218)
Q Consensus        43 frll~t~~HE~GHAlaalltG   63 (218)
                      +.-+.|++||+|||+=.+++-
T Consensus       348 ~~dv~TL~HE~GHa~H~~ls~  368 (564)
T 3ahn_A          348 SGDIDVLTHEAGHAFQVYESR  368 (564)
T ss_dssp             THHHHHHHHHHHHHHHHHHTT
T ss_pred             ccchhhHHHHhCHHHHHHHhc
Confidence            467899999999999999875

>3sks_A Putative oligoendopeptidase F; structural genomics, center for structural genomics of infec diseases, csgid, protease, hydrolase; 2.05A {Bacillus anthracis}

Probab=83.16  E-value=0.67  Score=43.85  Aligned_cols=24  Identities=29%  Similarity=0.151  Sum_probs=20.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCc
Q 027815           42 PFKLITVFLHEASHAIACKLTCGD   65 (218)
Q Consensus        42 Pfrll~t~~HE~GHAlaalltGg~   65 (218)
                      -++-+.|++||+|||+=.+++..+
T Consensus       350 t~~dV~TL~HE~GHalH~~ls~~~  373 (567)
T 3sks_A          350 TSGDIDVLTHEAGHAFQVYESRKF  373 (567)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CcchHHHHHHHccHHHHHHHHccC
Confidence            457899999999999999998643

>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11

Probab=82.53  E-value=0.48  Score=40.63  Aligned_cols=15  Identities=33%  Similarity=0.534  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHH
Q 027815           44 KLITVFLHEASHAIA   58 (218)
Q Consensus        44 rll~t~~HE~GHAla   58 (218)
                      .+..|+.||+|||+-
T Consensus       194 ~l~~va~HEiGHaLG  208 (255)
T 1slm_A          194 NLFLVAAHEIGHSLG  208 (255)
T ss_dssp             EHHHHHHHHHHHHTT
T ss_pred             eehhhhHHHHHHHhc
Confidence            367899999999974

>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...

Probab=80.47  E-value=0.66  Score=36.71  Aligned_cols=15  Identities=27%  Similarity=0.525  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHH
Q 027815           44 KLITVFLHEASHAIA   58 (218)
Q Consensus        44 rll~t~~HE~GHAla   58 (218)
                      .+..|..||+||++-
T Consensus       107 ~~~~~~~HE~GH~lG  121 (159)
T 1y93_A          107 NLFLTAVHEIGHSLG  121 (159)
T ss_dssp             EHHHHHHHHHHHHTT
T ss_pred             hhhhhhhhhhhhhhc
Confidence            467899999999973

>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2, protein ST initiative; 2.50A {Enterococcus faecium}

Probab=80.03  E-value=0.92  Score=42.83  Aligned_cols=22  Identities=18%  Similarity=0.371  Sum_probs=18.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhC
Q 027815           42 PFKLITVFLHEASHAIACKLTC   63 (218)
Q Consensus        42 Pfrll~t~~HE~GHAlaalltG   63 (218)
                      -+.-+.|++||+|||+=.+++-
T Consensus       360 t~~dv~TL~HE~GHalH~~ls~  381 (587)
T 2qr4_A          360 TLDQLFTLVHEMGHSVHSYFTR  381 (587)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CcchHHHHHHHhchHHHHHHhc
Confidence            4688999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d2ce7a1	193	Cell division protein FtsH, C-terminal domain {The	96.19
d2di4a1	202	Cell division protein FtsH, C-terminal domain {Aqu	95.96
d1rm8a_	169	Matrix metalloproteinase-16 (MMP-16) {Human (Homo	92.1
d1y93a1	158	Macrophage elastase (MMP-12) {Human (Homo sapiens)	91.64
d1mmqa_	166	Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9	91.25
d1xuca1	169	Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxI	91.07
d2ovxa1	159	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	91.05
d1hfca_	157	Fibroblast collagenase (MMP-1) {Human (Homo sapien	91.01
d1hy7a_	168	Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibro	90.98
d1i76a_	163	Neutrophil collagenase (MMP-8) {Human (Homo sapien	90.74
d1hv5a_	162	Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxI	90.58
d1qiba_	161	Gelatinase A {Human (Homo sapiens) [TaxId: 9606]}	89.99
d1bqqm_	174	Membrane-type matrix metalloproteinase (CDMT1-MMP)	87.8
d1s4bp_	654	Neurolysin (endopeptidase 24.16, thimet oligopepti	86.2
d1g9ka2	242	Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId	86.04
d1sata2	243	Metalloprotease {Serratia marcescens [TaxId: 615]}	85.89
d1k7ia2	241	Metalloprotease {Erwinia chrysanthemi [TaxId: 556]	85.71
d1i1ip_	665	Neurolysin (endopeptidase 24.16, thimet oligopepti	85.45
d1kapp2	246	Metalloprotease {Pseudomonas aeruginosa [TaxId: 28	84.7
d1j36a_	598	Angiotensin converting enzyme, ACE {Fruit fly (Dro	80.81

>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.19  E-value=0.0013  Score=51.92  Aligned_cols=32  Identities=19%  Similarity=0.214  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHh--CCceeeEEEEcCCC
Q 027815           45 LITVFLHEASHAIACKLT--CGDVEGMQVHANEG   76 (218)
Q Consensus        45 ll~t~~HE~GHAlaallt--Gg~v~~i~l~~d~S   76 (218)
                      -=.+..||.|||++|.+.  +.+++.+.|.|++.
T Consensus         7 r~~vA~HEAGHAlva~~l~~~~~i~~vsI~~r~~   40 (193)
T d2ce7a1           7 KRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGY   40 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCCCCEEECC----
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCceeEEEEecCcc
Confidence            345789999999999998  55699999998743

>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.96  E-value=0.0013  Score=52.04  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHhCC--ceeeEEEEcCCCcee
Q 027815           46 ITVFLHEASHAIACKLTCG--DVEGMQVHANEGGAT   79 (218)
Q Consensus        46 l~t~~HE~GHAlaalltGg--~v~~i~l~~d~SG~t   79 (218)
                      =-+..||.|||++|.+++.  ++..+.|.|++.+..
T Consensus         8 ~~vA~HEAGHAvva~~l~~~~~v~~vtI~prg~~~g   43 (202)
T d2di4a1           8 EKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALG   43 (202)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCCCCCCEECC-------
T ss_pred             HHHHHHHHHHHHHHHHcCCCCceeEEEEecCCcccc
Confidence            4578999999999999874  689999988764443

>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrix metalloproteinase-16 (MMP-16)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.10  E-value=0.023  Score=41.95  Aligned_cols=18  Identities=33%  Similarity=0.425  Sum_probs=14.7

Q ss_pred             hhhHHHHHHHHHHHHHHH
Q 027815           41 TPFKLITVFLHEASHAIA   58 (218)
Q Consensus        41 ~Pfrll~t~~HE~GHAla   58 (218)
                      .+..+..|+.||+|||+-
T Consensus       113 ~~~~~~~v~~HEiGHaLG  130 (169)
T d1rm8a_         113 DGNDLFLVAVHELGHALG  130 (169)
T ss_dssp             SSEEHHHHHHHHHHHHHT
T ss_pred             Ccchhhhhhhhhhhhhhc
Confidence            445678999999999984

>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Macrophage elastase (MMP-12)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.031  Score=41.12  Aligned_cols=15  Identities=27%  Similarity=0.525  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHH
Q 027815           44 KLITVFLHEASHAIA   58 (218)
Q Consensus        44 rll~t~~HE~GHAla   58 (218)
                      ....|+.||+|||+-
T Consensus       106 ~~~~~~~HEiGHaLG  120 (158)
T d1y93a1         106 NLFLTAVHEIGHSLG  120 (158)
T ss_dssp             EHHHHHHHHHHHHTT
T ss_pred             cHHHHhhhhhhhhcC
Confidence            467999999999974

>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrilysin (MMP-7)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.25  E-value=0.04  Score=41.29  Aligned_cols=15  Identities=20%  Similarity=0.432  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHH
Q 027815           44 KLITVFLHEASHAIA   58 (218)
Q Consensus        44 rll~t~~HE~GHAla   58 (218)
                      ....|+.||+|||+-
T Consensus       113 ~~~~v~~HEiGHaLG  127 (166)
T d1mmqa_         113 NFLYAATHELGHSLG  127 (166)
T ss_dssp             EHHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhhccccC
Confidence            456899999999985

>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Collagenase-3 (MMP-13)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=0.043  Score=40.92  Aligned_cols=17  Identities=29%  Similarity=0.511  Sum_probs=13.8

Q ss_pred             hhHHHHHHHHHHHHHHH
Q 027815           42 PFKLITVFLHEASHAIA   58 (218)
Q Consensus        42 Pfrll~t~~HE~GHAla   58 (218)
                      +.....|+.||+|||+-
T Consensus       110 ~~~~~~v~~HEiGHaLG  126 (169)
T d1xuca1         110 GYNLFLVAAHEFGHSLG  126 (169)
T ss_dssp             SEEHHHHHHHHHHHHHT
T ss_pred             CceeeeehhhhhccccC
Confidence            34567899999999984

>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.05  E-value=0.039  Score=40.79  Aligned_cols=13  Identities=38%  Similarity=0.529  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHH
Q 027815           45 LITVFLHEASHAI   57 (218)
Q Consensus        45 ll~t~~HE~GHAl   57 (218)
                      +..|+.||+|||+
T Consensus       111 ~~~v~~HElGHaL  123 (159)
T d2ovxa1         111 LFLVAAHQFGHAL  123 (159)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             eeeeehhhhcccc
Confidence            4579999999997

>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Fibroblast collagenase (MMP-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.01  E-value=0.037  Score=40.67  Aligned_cols=14  Identities=36%  Similarity=0.501  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHH
Q 027815           44 KLITVFLHEASHAI   57 (218)
Q Consensus        44 rll~t~~HE~GHAl   57 (218)
                      ....|+.||+|||+
T Consensus       105 ~~~~v~~HEiGHaL  118 (157)
T d1hfca_         105 NLHRVAAHELGHSL  118 (157)
T ss_dssp             BHHHHHHHHHHHHH
T ss_pred             hhhhhHhhhhhhhc
Confidence            34578999999997

>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Stromelysin-1 (MMP-3)
species: Human (Homo sapiens), fibroblast [TaxId: 9606]

Probab=90.98  E-value=0.045  Score=40.63  Aligned_cols=14  Identities=36%  Similarity=0.560  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHH
Q 027815           44 KLITVFLHEASHAI   57 (218)
Q Consensus        44 rll~t~~HE~GHAl   57 (218)
                      ....|+.||+|||+
T Consensus       112 ~~~~v~~HEiGHAL  125 (168)
T d1hy7a_         112 NLFLVAAHEIGHSL  125 (168)
T ss_dssp             EHHHHHHHHHHHHH
T ss_pred             cceeeeHhhhcccc
Confidence            45689999999999

>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Neutrophil collagenase (MMP-8)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.74  E-value=0.048  Score=40.62  Aligned_cols=17  Identities=29%  Similarity=0.524  Sum_probs=13.8

Q ss_pred             hhHHHHHHHHHHHHHHH
Q 027815           42 PFKLITVFLHEASHAIA   58 (218)
Q Consensus        42 Pfrll~t~~HE~GHAla   58 (218)
                      +.....|+.||+|||+-
T Consensus       109 ~~~~~~v~~HEiGHaLG  125 (163)
T d1i76a_         109 NYNLFLVAAHEFGHSLG  125 (163)
T ss_dssp             SCBHHHHHHHHHHHHHT
T ss_pred             cchheeehhhhhhhhhc
Confidence            44557899999999985

>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Stromelysin-3 (MMP-11)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.58  E-value=0.045  Score=41.14  Aligned_cols=14  Identities=36%  Similarity=0.567  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHH
Q 027815           44 KLITVFLHEASHAI   57 (218)
Q Consensus        44 rll~t~~HE~GHAl   57 (218)
                      .+..|+.||+|||+
T Consensus       112 ~~~~v~~HEiGHaL  125 (162)
T d1hv5a_         112 DLLQVAAHEFGHVL  125 (162)
T ss_dssp             EHHHHHHHHHHHHT
T ss_pred             chhhhhhhhhhhhc
Confidence            35789999999997

>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Gelatinase A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.99  E-value=0.062  Score=39.44  Aligned_cols=17  Identities=35%  Similarity=0.516  Sum_probs=13.6

Q ss_pred             hhHHHHHHHHHHHHHHH
Q 027815           42 PFKLITVFLHEASHAIA   58 (218)
Q Consensus        42 Pfrll~t~~HE~GHAla   58 (218)
                      +.....|+.||+|||+-
T Consensus       106 ~~~~~~~~~HEiGHaLG  122 (161)
T d1qiba_         106 GYSLFLVAAHEFGHAMG  122 (161)
T ss_dssp             SEEHHHHHHHHHHHHHT
T ss_pred             cchhheeeeeccccccc
Confidence            34567799999999984

>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase (CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Membrane-type matrix metalloproteinase (CDMT1-MMP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.80  E-value=0.084  Score=38.55  Aligned_cols=17  Identities=29%  Similarity=0.427  Sum_probs=13.7

Q ss_pred             hhHHHHHHHHHHHHHHH
Q 027815           42 PFKLITVFLHEASHAIA   58 (218)
Q Consensus        42 Pfrll~t~~HE~GHAla   58 (218)
                      +..+..|+.||+|||+-
T Consensus       117 ~~~~~~v~~HEiGHaLG  133 (174)
T d1bqqm_         117 GNDIFLVAVHELGHALG  133 (174)
T ss_dssp             SCBHHHHHHHHHHHTTT
T ss_pred             chhhhhhhhcccccccC
Confidence            34567999999999973

>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Neurolysin-like
domain: Neurolysin (endopeptidase 24.16, thimet oligopeptidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.20  E-value=0.17  Score=46.61  Aligned_cols=28  Identities=14%  Similarity=0.265  Sum_probs=22.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhCCcee
Q 027815           40 LTPFKLITVFLHEASHAIACKLTCGDVE   67 (218)
Q Consensus        40 l~Pfrll~t~~HE~GHAlaalltGg~v~   67 (218)
                      +-=+.-+.|+|||+|||+=.+++--+..
T Consensus       439 lLs~~ev~TlFHEfGHalH~ll~~~~y~  466 (654)
T d1s4bp_         439 LLQHDEVETYFHEFGHVMHQLCSQAEFA  466 (654)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHHHCCCSSG
T ss_pred             eecHHHhhhHHHHHHHHHHHHhcccccc
Confidence            3345779999999999999999776643

>d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Pseudomonas sp., tac ii 18 [TaxId: 306]

Probab=86.04  E-value=0.15  Score=40.77  Aligned_cols=14  Identities=21%  Similarity=0.249  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHH
Q 027815           44 KLITVFLHEASHAI   57 (218)
Q Consensus        44 rll~t~~HE~GHAl   57 (218)
                      ....|+.||+|||+
T Consensus       160 ~~~~t~~HEIGHaL  173 (242)
T d1g9ka2         160 YGRQTLTHEIGHTL  173 (242)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhhhhh
Confidence            34579999999998

>d1sata2 d.92.1.6 (A:4-246) Metalloprotease {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Serratia marcescens [TaxId: 615]

Probab=85.89  E-value=0.12  Score=41.46  Aligned_cols=13  Identities=38%  Similarity=0.496  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHH
Q 027815           45 LITVFLHEASHAI   57 (218)
Q Consensus        45 ll~t~~HE~GHAl   57 (218)
                      ...|+.||+|||+
T Consensus       167 ~~~t~lHEIGHaL  179 (243)
T d1sata2         167 GRQTFTHEIGHAL  179 (243)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            3568899999996

>d1k7ia2 d.92.1.6 (A:18-258) Metalloprotease {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Erwinia chrysanthemi [TaxId: 556]

Probab=85.71  E-value=0.15  Score=40.98  Aligned_cols=12  Identities=42%  Similarity=0.659  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHH
Q 027815           46 ITVFLHEASHAI   57 (218)
Q Consensus        46 l~t~~HE~GHAl   57 (218)
                      ..|+.||+|||+
T Consensus       166 ~~t~~HEIGHaL  177 (241)
T d1k7ia2         166 RQTFTHEIGHAL  177 (241)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            468999999996

>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Neurolysin-like
domain: Neurolysin (endopeptidase 24.16, thimet oligopeptidase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.45  E-value=0.2  Score=46.33  Aligned_cols=28  Identities=18%  Similarity=0.249  Sum_probs=22.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhCCcee
Q 027815           40 LTPFKLITVFLHEASHAIACKLTCGDVE   67 (218)
Q Consensus        40 l~Pfrll~t~~HE~GHAlaalltGg~v~   67 (218)
                      +--+.-+.|+|||+|||+=.+++--+..
T Consensus       450 lls~~ev~TLFHEfGHalH~lls~~~y~  477 (665)
T d1i1ip_         450 LLRHDEVRTYFHEFGHVMHQICAQTDFA  477 (665)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHHHCCCSSG
T ss_pred             ccchhhHhhhHHHHHHHHHHhhcccccc
Confidence            3347889999999999999999865543

>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.70  E-value=0.18  Score=40.42  Aligned_cols=13  Identities=23%  Similarity=0.322  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHH
Q 027815           45 LITVFLHEASHAI   57 (218)
Q Consensus        45 ll~t~~HE~GHAl   57 (218)
                      ...|+.||+|||+
T Consensus       170 ~~~t~lHEIGHaL  182 (246)
T d1kapp2         170 GRQTLTHEIGHTL  182 (246)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            4568999999997

>d1j36a_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Neurolysin-like
domain: Angiotensin converting enzyme, ACE
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.81  E-value=0.32  Score=43.83  Aligned_cols=22  Identities=14%  Similarity=-0.076  Sum_probs=18.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCC
Q 027815           43 FKLITVFLHEASHAIACKLTCG   64 (218)
Q Consensus        43 frll~t~~HE~GHAlaalltGg   64 (218)
                      .+-+.|++||+||+.=-+++-.
T Consensus       337 ~~dv~Tl~HE~GH~~h~~~~~~  358 (598)
T d1j36a_         337 QDQLFTVHHELGHIQYFLQYQH  358 (598)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc
Confidence            4789999999999998887644