BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027817
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2
Length = 212
Score = 221 bits (563), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 103/196 (52%), Positives = 136/196 (69%)
Query: 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
PWL GLGNPG+KY GTRHNVGFEM+D A +GI+MNT K+ G G +G+ PVL+ K
Sbjct: 17 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTEQSKSLLGIGSIGEVPVLVVK 76
Query: 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 137
PQ+YMN SGE+ GPLAAYY++PL +L+ +DD LP GV ++V+ +
Sbjct: 77 PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 136
Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
G REF RL IGIG PPG+MDP+AFLLQKF++ R +IDTAL++GV+ ++ L+ KG +
Sbjct: 137 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSG 196
Query: 198 SARHFNTIQKYKHIRL 213
S FN +QKYK R+
Sbjct: 197 STERFNLVQKYKFHRV 212
>pdb|1RYB|A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron
Splicing Factor Crs2
Length = 205
Score = 216 bits (551), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 99/189 (52%), Positives = 132/189 (69%)
Query: 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
PWL GLGNPG+KY GTRHNVGFEM+D A +GI+MNT+ K+ G G +G+ PVL+ K
Sbjct: 17 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 76
Query: 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 137
PQ+YMN SGE+ GPLAAYY++PL +L+ +DD LP GV ++V+ +
Sbjct: 77 PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 136
Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
G REF RL IGIG PPG+MDP+AFLLQKF++ R +IDTAL++GV+ ++ L+ KG +
Sbjct: 137 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSG 196
Query: 198 SARHFNTIQ 206
S FN +Q
Sbjct: 197 STERFNLVQ 205
>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing
Factor Crs2
Length = 202
Score = 215 bits (548), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 100/190 (52%), Positives = 132/190 (69%)
Query: 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
PWL GLGNPG+KY GTRHNVGFEM+D A +GI+MNT K+ G G +G+ PVL+ K
Sbjct: 5 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTNQFKSLLGTGSIGEVPVLVVK 64
Query: 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 137
PQ+YMN SGE+ GPLAAYY++PL +L+ +DD LP GV ++V+ +
Sbjct: 65 PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 124
Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
G REF RL IGIG PPG+MDP+AFLLQKF++ R +IDTAL++GV+ ++ L+ KG +
Sbjct: 125 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSG 184
Query: 198 SARHFNTIQK 207
S FN +QK
Sbjct: 185 STERFNLVQK 194
>pdb|2LGJ|A Chain A, Solution Structure Of Mspth
Length = 191
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 110/196 (56%), Gaps = 7/196 (3%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAP 72
+A P L VGLGNPG Y TRHN+GF + D A G S VH K A G +
Sbjct: 1 MAEPLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIG-SAFKVHKKSGAEVVTGRLAGTS 59
Query: 73 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 132
V+LAKP+ YMN SG GPLA +Y +P +++V HD++ + G +
Sbjct: 60 VVLAKPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLR 119
Query: 133 SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 192
SV + G + F R+RIG+GRPPG+ DP AF+L+ F A R + T +++ + +LL++
Sbjct: 120 SVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERAEVPTIVEQAADATELLIA 178
Query: 193 KGLTESARHFNTIQKY 208
+GL E A+ NT+ +
Sbjct: 179 QGL-EPAQ--NTVHAW 191
>pdb|3KJZ|A Chain A, Crystal Structure Of Native Peptidyl-Trna Hydrolase From
Mycobacterium Smegmatis
pdb|3KK0|A Chain A, Crystal Structure Of Partially Folded Intermediate State
Of Peptidyl- Trna Hydrolase From Mycobacterium Smegmatis
pdb|3P2J|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Smegmatis At 2.2 A Resolution
Length = 191
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 109/196 (55%), Gaps = 7/196 (3%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAP 72
+A P L VGLGNPG Y TRHN+GF + D A G S VH K A G +
Sbjct: 1 MAEPLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIG-SAFKVHKKSGAEVVTGRLAGTT 59
Query: 73 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 132
V+LAKP+ MN SG GPLA +Y +P +++V HD++ + G +
Sbjct: 60 VVLAKPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLR 119
Query: 133 SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 192
SV + G + F R+RIG+GRPPG+ DP AF+L+ F + R + T +++ + +LL++
Sbjct: 120 SVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAERAEVPTIVEQAADATELLIA 178
Query: 193 KGLTESARHFNTIQKY 208
+GL E A+ NT+ +
Sbjct: 179 QGL-EPAQ--NTVHAW 191
>pdb|2JRC|A Chain A, Solution Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis H37rv
Length = 204
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 99/196 (50%), Gaps = 5/196 (2%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPV 73
+A P L VGLGNPG Y TRHN+GF + D A G A G +
Sbjct: 1 MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSL 60
Query: 74 LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKS 133
+LAKP+ YMN SG GPLA +Y + ++V HDD+ L G +S
Sbjct: 61 VLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRS 120
Query: 134 VMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 193
V+ G ++F R+RIGIGRPPG+ DP AF+L+ F R + T ++ + +LL+ +
Sbjct: 121 VVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQ 179
Query: 194 GLTESARHFNTIQKYK 209
G+ + N + +K
Sbjct: 180 GMEPAQ---NRVHAWK 192
>pdb|2Z2I|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2J|A Chain A, Crystal Structure Of Peptidyl-trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2J|B Chain B, Crystal Structure Of Peptidyl-trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2K|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis
pdb|3TCK|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 4
pdb|3TCN|A Chain A, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 2 Grown In Presence Of
Pentaglycine
pdb|3TCN|B Chain B, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 2 Grown In Presence Of
Pentaglycine
pdb|3TD2|A Chain A, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 5
pdb|3TD6|A Chain A, Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis
From Trigonal Partially Dehydrated Crystal
Length = 191
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 94/182 (51%), Gaps = 2/182 (1%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPV 73
+A P L VGLGNPG Y TRHN+GF + D A G A G +
Sbjct: 1 MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSL 60
Query: 74 LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKS 133
+LAKP+ YMN SG GPLA +Y + ++V HDD+ L G +S
Sbjct: 61 VLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRS 120
Query: 134 VMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 193
V+ G ++F R+RIGIGRPPG+ DP AF+L+ F R + T ++ + +LL+ +
Sbjct: 121 VVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQ 179
Query: 194 GL 195
G+
Sbjct: 180 GM 181
>pdb|2PTH|A Chain A, Peptidyl-Trna Hydrolase From Escherichia Coli
Length = 193
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 7/191 (3%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVLL 75
L VGL NPG +Y TRHN G +D AE + +A F + +G V L
Sbjct: 4 LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVRL 60
Query: 76 AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVM 135
P T+MNLSG++ +A+++++ + +LV HD++ LP GV K ++
Sbjct: 61 LVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDII 120
Query: 136 NNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 195
+ N F RLRIGIG P + F+L K ++ ID A+ E ++ + GL
Sbjct: 121 SKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGL 180
Query: 196 TESARHFNTIQ 206
T++ + +
Sbjct: 181 TKATNRLHAFK 191
>pdb|3VJR|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli In Complex With The
Cca-Acceptor-T[psi]c Domain Of Trna
pdb|3VJR|C Chain C, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli In Complex With The
Cca-Acceptor-T[psi]c Domain Of Trna
Length = 197
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 7/191 (3%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVLL 75
L VGL NPG +Y TRHN G +D AE + +A F + +G V L
Sbjct: 8 LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVRL 64
Query: 76 AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVM 135
P T+MNLSG++ +A+++++ + +LV HD++ LP GV K ++
Sbjct: 65 LVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDII 124
Query: 136 NNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 195
+ N F RLRIGIG P + F+L K ++ ID A+ E ++ + GL
Sbjct: 125 SKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGL 184
Query: 196 TESARHFNTIQ 206
T++ + +
Sbjct: 185 TKATNRLHAFK 195
>pdb|3OFV|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
pdb|3OFV|B Chain B, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
pdb|3OFV|C Chain C, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
Length = 211
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 7/183 (3%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVLL 75
L VGL NPG +Y TRHN G +D AE + +A F + +G V L
Sbjct: 25 LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVRL 81
Query: 76 AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVM 135
P T+MNLSG++ +A+++++ + +LV HD++ LP GV K ++
Sbjct: 82 LVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDII 141
Query: 136 NNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 195
+ N F RLRIGIG P + F+L K ++ ID A+ E ++ + GL
Sbjct: 142 SKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGL 201
Query: 196 TES 198
T++
Sbjct: 202 TKA 204
>pdb|3V2I|A Chain A, Structure Of A Peptidyl-Trna Hydrolase (Pth) From
Burkholderia Thailandensis
Length = 222
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 13/191 (6%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKP 78
L VGLGNPG +Y TRHN GF ++D A G ++ + + + + V L +P
Sbjct: 25 LIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEP 84
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNF 138
QTYMN SG+S LA ++K+ N +LV HD++ LP G K + +
Sbjct: 85 QTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL 144
Query: 139 RGNREFARLRIGIGRPPGQMDPKA----------FLLQKFNAIARERIDTALQEGVEVLK 188
++++ RLRIGIG P + A F+L+ ++ ID A++ + V+
Sbjct: 145 -SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERALAVMP 203
Query: 189 LLLSKGLTESA 199
++ KG TE A
Sbjct: 204 AVV-KGETERA 213
>pdb|4FOP|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Acinetobacter Baumannii At 1.86 A Resolution
pdb|4FOT|A Chain A, Crystal Structure Of Peptidyl- Trna Hydrolase From
Acinetobacter Baumannii At 2.20 A Resolution
pdb|4HOY|A Chain A, Crystal Structure Of Peptidyl- Trna Hydrolase From
Acinetobacter Baumannii At 1.78 A Resolution
pdb|4IKO|A Chain A, Structure Of Peptidyl- Trna Hydrolase From Acinetobacter
Baumannii At 1.90 A Resolution
Length = 193
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 6/191 (3%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKP 78
L VGLGNPG +Y TRHN GF ++ A+ GI++ N G+G + V L P
Sbjct: 6 LIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLP 65
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNF 138
TYMN SG+S P + +Y++ +L+ HD++ + GV + ++ +
Sbjct: 66 MTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI 125
Query: 139 RGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 198
N F RLRIGIG P + +L K + + +D A+ + +KLL+ + ++
Sbjct: 126 GPN--FHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQA 183
Query: 199 ARHFNTIQKYK 209
N I YK
Sbjct: 184 ---MNQINAYK 191
>pdb|4FYJ|A Chain A, Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hydrolase
Length = 199
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APVL 74
L VGLGNPG +Y TRHN G ++ A +QG+S+ V + F G VG V
Sbjct: 12 LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSL--VADRKYF--GLVGKFSHQGKDVR 67
Query: 75 LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV 134
L P TYMN SG+S LA ++++ + +LV HD++ +P GV + +
Sbjct: 68 LLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDI 127
Query: 135 MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 194
+ F RLR+GIG P ++L + +E +DT++ + VL +L+
Sbjct: 128 IAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGD 187
Query: 195 LTESARHFNT 204
T + + ++
Sbjct: 188 WTRAMQKLHS 197
>pdb|4DHW|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom
Resolution
pdb|4DHW|B Chain B, Crystal Structure Of Peptidyl-Trna Hydrolase From
Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom
Resolution
pdb|4DJJ|A Chain A, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Pimelic Acid
At 2.9 Angstrom Resolution
pdb|4DJJ|B Chain B, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Pimelic Acid
At 2.9 Angstrom Resolution
pdb|4ERX|A Chain A, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Diethylene
Glycol At 2.5 Angstrom Resolution
pdb|4ERX|B Chain B, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Diethylene
Glycol At 2.5 Angstrom Resolution
pdb|4FNO|A Chain A, Crystal Structure Of Peptidyl T-Rna Hydrolase From
Pseudomonas Aeruginosa At 2.2 Angstrom Resolution
pdb|4FNO|B Chain B, Crystal Structure Of Peptidyl T-Rna Hydrolase From
Pseudomonas Aeruginosa At 2.2 Angstrom Resolution
Length = 194
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APVL 74
L VGLGNPG +Y TRHN G ++ A +QG+S+ V + F G VG V
Sbjct: 6 LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSL--VADRKYF--GLVGKFSHQGKDVR 61
Query: 75 LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV 134
L P TYMN SG+S LA ++++ + +LV HD++ +P GV + +
Sbjct: 62 LLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDI 121
Query: 135 MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 194
+ F RLR+GIG P ++L + +E +DT++ + VL +L+
Sbjct: 122 IAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGD 181
Query: 195 LTESARHFNT 204
T + + ++
Sbjct: 182 WTRAMQKLHS 191
>pdb|3NEA|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Francisella Tularensis
Length = 207
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 6/179 (3%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT---VHCKATFGQGFVGDAPVLLA 76
+ +GLGN G +Y+ TRHNVG I A+ S ++ ++C + + V+L
Sbjct: 25 MIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNC--NLAKVSIDYNNVVLV 82
Query: 77 KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMN 136
P TYMN SG + +A +YK+ +LV HD++ + G +S+ N
Sbjct: 83 FPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSI-N 141
Query: 137 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 195
G ++ RLRIGIG P + ++L + ++ ID+A+ G+ L +++ L
Sbjct: 142 QHLGTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGICFLDDIINYKL 200
>pdb|3S5T|A Chain A, Crystal Structure Of A Member Of Duf3298 Family (Bf2082)
From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
Length = 265
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 53 SMNTVHCKATFGQGFVGDAPVLLAKPQT 80
S+N+ A FG+G++G+ P + K T
Sbjct: 56 SLNSYFIAACFGEGYIGEKPAQVVKEYT 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,001,313
Number of Sequences: 62578
Number of extensions: 220267
Number of successful extensions: 588
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 16
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)