Query 027817
Match_columns 218
No_of_seqs 210 out of 1045
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 02:54:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pth_A Peptidyl-tRNA hydrolase 100.0 1.7E-79 5.8E-84 521.3 20.2 187 18-205 2-190 (193)
2 2z2i_A PTH, peptidyl-tRNA hydr 100.0 1.6E-79 5.3E-84 520.7 17.6 187 17-204 3-190 (191)
3 1ryb_A CRS2; alpha-beta, hydro 100.0 6.8E-79 2.3E-83 521.4 18.9 191 15-205 14-204 (205)
4 4hoy_A PTH, peptidyl-tRNA hydr 100.0 1.3E-78 4.3E-83 515.9 19.9 189 17-207 3-192 (193)
5 4fyj_A PTH, peptidyl-tRNA hydr 100.0 1.3E-78 4.6E-83 517.6 19.9 188 17-205 9-198 (199)
6 3v2i_A PTH, peptidyl-tRNA hydr 100.0 8E-78 2.7E-82 520.0 20.2 189 16-205 21-220 (222)
7 3nea_A PTH, peptidyl-tRNA hydr 100.0 3.2E-78 1.1E-82 517.7 15.8 185 17-202 22-207 (207)
8 4fno_A PTH, peptidyl-tRNA hydr 100.0 1.6E-79 5.5E-84 521.7 0.0 187 18-205 4-192 (194)
9 1cfz_A Hydrogenase 2 maturatio 88.7 4.3 0.00015 32.2 10.3 134 18-187 2-149 (162)
10 2jva_A Peptidyl-tRNA hydrolase 55.2 4.7 0.00016 30.6 1.6 41 104-152 2-44 (108)
11 4dh9_Y YAEJ; ribosome, YAEJ, r 49.1 3.8 0.00013 32.5 0.2 41 104-152 2-44 (140)
12 2ea9_A JW2626, hypothetical pr 45.3 22 0.00074 26.9 3.8 33 161-194 34-66 (105)
13 2ba3_A NIKA; dimer, bacterial 44.1 12 0.00042 23.7 2.0 33 151-183 4-37 (51)
14 2inw_A Putative structural pro 44.0 28 0.00097 27.2 4.4 33 161-194 48-80 (133)
15 3utn_X Thiosulfate sulfurtrans 42.1 23 0.00079 31.2 4.2 36 78-113 90-125 (327)
16 2e85_A Hydrogenase 3 maturatio 36.5 36 0.0012 26.7 4.1 132 18-191 5-146 (159)
17 4hbl_A Transcriptional regulat 34.0 47 0.0016 24.5 4.2 30 162-191 118-147 (149)
18 1am7_A Lysozyme; glycosidase, 33.6 43 0.0015 26.9 4.1 41 164-204 82-122 (158)
19 2zet_C Melanophilin; complex, 30.7 75 0.0026 25.1 5.1 21 165-185 14-34 (153)
20 3pu6_A Uncharacterized protein 28.7 64 0.0022 25.3 4.3 135 18-192 4-146 (157)
21 3kp7_A Transcriptional regulat 28.2 72 0.0025 23.3 4.4 30 162-191 119-148 (151)
22 1lj9_A Transcriptional regulat 28.2 66 0.0022 23.2 4.1 32 161-192 108-139 (144)
23 2llk_A Cyclin-D-binding MYB-li 27.9 1.3E+02 0.0044 20.8 5.4 40 165-204 23-65 (73)
24 1c8b_A Spore protease; novel f 25.8 51 0.0017 30.1 3.6 93 15-123 111-214 (371)
25 3deu_A Transcriptional regulat 25.4 44 0.0015 25.4 2.8 30 162-191 134-163 (166)
26 2cqq_A RSGI RUH-037, DNAJ homo 24.7 1.5E+02 0.0051 20.3 5.2 40 166-205 9-55 (72)
27 3mtn_B UBA80, ubcep1, ubiquiti 24.0 60 0.0021 21.5 3.0 39 92-130 33-85 (85)
28 3fzq_A Putative hydrolase; YP_ 24.0 43 0.0015 26.7 2.6 26 85-110 201-226 (274)
29 2l32_A Small archaeal modifier 23.4 52 0.0018 22.7 2.5 31 86-116 20-50 (74)
30 3r4c_A Hydrolase, haloacid deh 23.4 42 0.0015 26.8 2.4 24 86-109 196-219 (268)
31 3ddh_A Putative haloacid dehal 23.1 52 0.0018 24.8 2.8 29 85-113 159-189 (234)
32 3dnp_A Stress response protein 21.6 48 0.0016 26.9 2.4 58 85-168 203-261 (290)
33 3dao_A Putative phosphatse; st 21.4 51 0.0017 27.0 2.5 25 85-109 212-236 (283)
34 2k9i_A Plasmid PRN1, complete 21.2 73 0.0025 19.6 2.8 30 152-182 1-30 (55)
35 3mpo_A Predicted hydrolase of 21.0 45 0.0015 26.9 2.1 25 85-109 198-222 (279)
36 4dw8_A Haloacid dehalogenase-l 20.8 47 0.0016 26.7 2.2 24 86-109 199-222 (279)
37 1zbd_B Rabphilin-3A; G protein 20.8 1E+02 0.0035 23.7 4.1 21 165-185 7-27 (134)
38 2pq0_A Hypothetical conserved 20.7 43 0.0015 26.8 1.9 57 86-168 185-242 (258)
39 3pgv_A Haloacid dehalogenase-l 20.7 51 0.0017 27.0 2.4 25 86-110 211-235 (285)
40 2aby_A Hypothetical protein TA 20.6 1.6E+02 0.0055 22.9 5.0 39 165-210 82-120 (146)
41 3l7y_A Putative uncharacterize 20.0 56 0.0019 27.0 2.5 57 86-168 230-287 (304)
No 1
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A
Probab=100.00 E-value=1.7e-79 Score=521.30 Aligned_cols=187 Identities=35% Similarity=0.638 Sum_probs=179.5
Q ss_pred CeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 027817 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY 96 (218)
Q Consensus 18 ~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ 96 (218)
|+|||||||||++|++||||||||++|+||++++.+++ +.++.+.++++.+.+++++|+||+||||+||+||+++++||
T Consensus 2 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~y 81 (193)
T 2pth_A 2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF 81 (193)
T ss_dssp CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred cEEEEEECCCCcccccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHHh
Confidence 68999999999999999999999999999999999987 56788999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcC-CCCccEEEEeecCCCCCCCccccccCcCCHHHHHH
Q 027817 97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRG-NREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175 (218)
Q Consensus 97 ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~g-t~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~~ 175 (218)
+|+++++||||||||||+|++|+|.+||+|||||||||+++| | |++|+|||||||||..+.++++|||++|+++|++.
T Consensus 82 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-g~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~ 160 (193)
T 2pth_A 82 RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKL-GNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKL 160 (193)
T ss_dssp TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHT-TSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHH
T ss_pred CCCHHHEEEEecccCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999 6 89999999999999644568999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 027817 176 IDTALQEGVEVLKLLLSKGLTESARHFNTI 205 (218)
Q Consensus 176 l~~~i~~a~~~~~~~i~~~~~~amn~~n~~ 205 (218)
++++++.|++|++.|+++++++|||+||.+
T Consensus 161 l~~~i~~a~~a~~~~~~~~~~~amn~~n~~ 190 (193)
T 2pth_A 161 IDEAIDEAARCTEMWFTDGLTKATNRLHAF 190 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHhCc
Confidence 999999999999999999999999999974
No 2
>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A
Probab=100.00 E-value=1.6e-79 Score=520.73 Aligned_cols=187 Identities=41% Similarity=0.792 Sum_probs=169.0
Q ss_pred CCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 027817 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY 95 (218)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~ 95 (218)
.|+|||||||||++|++|||||||+++|+||++++.++.+ .++.+.++++.+.+++++|+||+||||+||+||+++++|
T Consensus 3 ~m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~~ 82 (191)
T 2z2i_A 3 EPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKF 82 (191)
T ss_dssp SCEEEEECCCCSHHHHTBGGGHHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHH
T ss_pred ccEEEEEECCCCchhccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHHH
Confidence 4799999999999999999999999999999999999865 468899999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHH
Q 027817 96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175 (218)
Q Consensus 96 ~ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~~ 175 (218)
|+|+++++||||||||||+|++|+|.+||+|||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.
T Consensus 83 yki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~ 161 (191)
T 2z2i_A 83 YSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAE 161 (191)
T ss_dssp TTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHTT
T ss_pred hCCCHHHEEEEecccCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999 699999999999999655679999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHhhhc
Q 027817 176 IDTALQEGVEVLKLLLSKGLTESARHFNT 204 (218)
Q Consensus 176 l~~~i~~a~~~~~~~i~~~~~~amn~~n~ 204 (218)
++++++.|++|++.|+++++++|||+||.
T Consensus 162 l~~~i~~a~~a~~~~~~~~~~~amn~~n~ 190 (191)
T 2z2i_A 162 VPTICEQAADATELLIEQGMEPAQNRVHA 190 (191)
T ss_dssp HHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHhC
Confidence 99999999999999999999999999995
No 3
>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A
Probab=100.00 E-value=6.8e-79 Score=521.39 Aligned_cols=191 Identities=57% Similarity=1.056 Sum_probs=177.4
Q ss_pred CCCCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHH
Q 027817 15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA 94 (218)
Q Consensus 15 ~~~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~ 94 (218)
++.++|||||||||++|++|||||||+++|+||++++.++++.++.+.++++.+.+++++|+||+||||+||+||+++++
T Consensus 14 ~~~~~LIVGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~~ 93 (205)
T 1ryb_A 14 EYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAA 93 (205)
T ss_dssp -CCCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred CCCCEEEEEECCCChhhccCchHHHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHHH
Confidence 46789999999999999999999999999999999999988878999999999999999999999999999999999999
Q ss_pred HcCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHH
Q 027817 95 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 174 (218)
Q Consensus 95 ~~ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~ 174 (218)
||+|++++|||||||||||+|++|+|.+||+|||||||||+++|.||++|+|||||||||+.+.++++|||++|+++|++
T Consensus 94 ~yki~~~~ilVihDdLdLp~G~iRlk~gGs~gGHNGLkSI~~~L~gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~ 173 (205)
T 1ryb_A 94 YYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERV 173 (205)
T ss_dssp HTTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHH
T ss_pred HhCCCHHHEEEEeecccCCCCeEEEeeCCCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCchhhhhcCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999338899999999999965567999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 027817 175 RIDTALQEGVEVLKLLLSKGLTESARHFNTI 205 (218)
Q Consensus 175 ~l~~~i~~a~~~~~~~i~~~~~~amn~~n~~ 205 (218)
.|+++++.|++|++.|+++++++|||+||..
T Consensus 174 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~ 204 (205)
T 1ryb_A 174 QIDTALEQGVDAVRTLVLKGFSGSTERFNLV 204 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----CCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 9999999999999999999999999999963
No 4
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=100.00 E-value=1.3e-78 Score=515.94 Aligned_cols=189 Identities=35% Similarity=0.655 Sum_probs=181.2
Q ss_pred CCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 027817 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY 95 (218)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~ 95 (218)
.++|||||||||++|++|||||||+++|+||++++.++.+ .++.+.+++..+.+++++|+||+||||+||+||+++++|
T Consensus 3 ~ikLIVGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~~ 82 (193)
T 4hoy_A 3 NISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKF 82 (193)
T ss_dssp CCCEEEECCCCSTTTTTBGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHH
T ss_pred CceEEEEcCCCchhhCcCcccHHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHHH
Confidence 3689999999999999999999999999999999999855 578899999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHH
Q 027817 96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175 (218)
Q Consensus 96 ~ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~~ 175 (218)
|+++++++||||||||||+|++|+|.+||+|||||||||+++| || ||+|||||||||+++.++++|||++|+++|++.
T Consensus 83 ~ki~~~~ilVihDdldL~~G~irlk~~G~~gGHNGlkSI~~~l-gt-df~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~ 160 (193)
T 4hoy_A 83 YQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI-GP-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSL 160 (193)
T ss_dssp TTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHTTHHHH-CS-CSEEEEEECCCCSSGGGHHHHHTSBCCHHHHHH
T ss_pred cCCCchheEEeeeccccccCceeeccCCCCCCcCCccchhhHh-cc-ccceEEEeeCCCCCCCCcccccCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999 56 799999999999888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHhhhchhh
Q 027817 176 IDTALQEGVEVLKLLLSKGLTESARHFNTIQK 207 (218)
Q Consensus 176 l~~~i~~a~~~~~~~i~~~~~~amn~~n~~~~ 207 (218)
++++++.|+++++.|+++++++|||+||++++
T Consensus 161 l~~~i~~a~~~i~~~~~~~~~~amn~~n~~kp 192 (193)
T 4hoy_A 161 MDGAIDHALSKVKLLVQGQVPQAMNQINAYKP 192 (193)
T ss_dssp HHHHHHHHHHTHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHhCCCC
Confidence 99999999999999999999999999998654
No 5
>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=1.3e-78 Score=517.65 Aligned_cols=188 Identities=35% Similarity=0.622 Sum_probs=180.2
Q ss_pred CCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 027817 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY 95 (218)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~ 95 (218)
..-|||||||||++|+.|||||||+++|+||++++.++.+ .+|.+.++++.+++++++|+||+||||+||+||+++++|
T Consensus 9 ~~~lIvGLGNPG~~Y~~TRHNvGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~ 88 (199)
T 4fyj_A 9 AVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGF 88 (199)
T ss_dssp CCCEEEECCCCSGGGTTCGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHH
T ss_pred eeeEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHH
Confidence 3469999999999999999999999999999999999864 478899999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCC-CccEEEEeecCCCCCCCccccccCcCCHHHHH
Q 027817 96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNR-EFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 174 (218)
Q Consensus 96 ~ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~-~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~ 174 (218)
|+|+++++||||||||||+|++|+|.+||+|||||||||+++| ||+ +|+|||||||||+.+.++++|||++|+++|++
T Consensus 89 yki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~ 167 (199)
T 4fyj_A 89 FRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQE 167 (199)
T ss_dssp TTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-CSSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHHH
T ss_pred hCCCHHHEEEEEecCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCccceEEEEEEeCCCCCCCchhhhhccCCCHHHHH
Confidence 9999999999999999999999999999999999999999999 687 99999999999987778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 027817 175 RIDTALQEGVEVLKLLLSKGLTESARHFNTI 205 (218)
Q Consensus 175 ~l~~~i~~a~~~~~~~i~~~~~~amn~~n~~ 205 (218)
.|+++++.|++|++.|+++++++|||+||+.
T Consensus 168 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~ 198 (199)
T 4fyj_A 168 LLDTSIDFALGVLPEMLAGDWTRAMQKLHSQ 198 (199)
T ss_dssp HHHHHHHHHHHTHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence 9999999999999999999999999999974
No 6
>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}
Probab=100.00 E-value=8e-78 Score=519.96 Aligned_cols=189 Identities=34% Similarity=0.612 Sum_probs=175.8
Q ss_pred CCCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHH
Q 027817 16 ARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA 94 (218)
Q Consensus 16 ~~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~ 94 (218)
..++|||||||||++|+.|||||||+++|+||++++.++.+. +|.+.++++.+.+++++|+||+||||+||+||+++++
T Consensus 21 m~~~LIVGLGNPG~~Y~~TRHNiGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~ 100 (222)
T 3v2i_A 21 SMIKLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAH 100 (222)
T ss_dssp -CCCEEEECCCCSGGGTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred ceEEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHH
Confidence 457899999999999999999999999999999999998764 6889999999999999999999999999999999999
Q ss_pred HcCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCC----------CCCCCccccc
Q 027817 95 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRP----------PGQMDPKAFL 164 (218)
Q Consensus 95 ~~ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP----------~~~~~v~~yV 164 (218)
||+|++++|||||||||||+|++|+|.+||+|||||||||+++| ||++|+||||||||| +.+.++++||
T Consensus 101 ~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLKSI~~~L-gt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~yV 179 (222)
T 3v2i_A 101 FFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFV 179 (222)
T ss_dssp HHTCCGGGEEEEEEETTSCTTCEEEEECCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCTTTTCC---------CHHHHT
T ss_pred HhCCCHHHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeEEEEEEcCCCcccccccccCCCCCcHHHHh
Confidence 99999999999999999999999999999999999999999999 689999999999999 5556899999
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 027817 165 LQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 205 (218)
Q Consensus 165 Ls~f~~~E~~~l~~~i~~a~~~~~~~i~~~~~~amn~~n~~ 205 (218)
|++|+++|++.|+++++.|++|++.|+++++++|||+||+.
T Consensus 180 L~~fs~~E~~~l~~~i~~a~~av~~~~~~~~~~amn~~n~~ 220 (222)
T 3v2i_A 180 LKPPRKEEQDVIDAAIERALAVMPAVVKGETERAMMQLHRN 220 (222)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHC---
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999975
No 7
>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}
Probab=100.00 E-value=3.2e-78 Score=517.71 Aligned_cols=185 Identities=32% Similarity=0.604 Sum_probs=178.7
Q ss_pred CCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 027817 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY 95 (218)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~ 95 (218)
.|+|||||||||++|++|||||||+++|+||++++.++.+. +|.+.++++.+.+++++|+||+||||+||+||+++++|
T Consensus 22 ~~~LIVGLGNPG~~Y~~TRHNvGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~ 101 (207)
T 3nea_A 22 KIKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANF 101 (207)
T ss_dssp CCCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHHH
T ss_pred CcEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHHH
Confidence 58999999999999999999999999999999999998765 78899999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHH
Q 027817 96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175 (218)
Q Consensus 96 ~ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~~ 175 (218)
|+|+++++||||||||||+|++|+|.+||+|||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.
T Consensus 102 yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLkSIi~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~~~ 180 (207)
T 3nea_A 102 YKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKD 180 (207)
T ss_dssp HTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHHHH
T ss_pred hCCCHHHEEEEEEcCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCchHHHhccCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999 699999999999999877789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHhh
Q 027817 176 IDTALQEGVEVLKLLLSKGLTESARHF 202 (218)
Q Consensus 176 l~~~i~~a~~~~~~~i~~~~~~amn~~ 202 (218)
|+++++.|++|++.|+++++++|||++
T Consensus 181 l~~~i~~a~~a~~~~~~~~~~~amn~~ 207 (207)
T 3nea_A 181 IDSAIDNGICFLDDIINYKLEPVMQKL 207 (207)
T ss_dssp HHHHHHHHHHTHHHHHTTCCCSCSTTC
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHhcC
Confidence 999999999999999999999999874
No 8
>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=1.6e-79 Score=521.68 Aligned_cols=187 Identities=35% Similarity=0.623 Sum_probs=178.2
Q ss_pred CeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 027817 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY 96 (218)
Q Consensus 18 ~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ 96 (218)
|+|||||||||++|++|||||||+++|+||++++.++. +.++.+.++++.+.+++++|+||+||||+||+||+++++||
T Consensus 4 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~fy 83 (194)
T 4fno_A 4 VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFF 83 (194)
Confidence 68999999999999999999999999999999999876 45788899988888999999999999999999999999999
Q ss_pred CCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCC-CCccEEEEeecCCCCCCCccccccCcCCHHHHHH
Q 027817 97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGN-REFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175 (218)
Q Consensus 97 ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt-~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~~ 175 (218)
+|+++++||||||||||+|++|+|.+||+|||||||||+++| || ++|+|||||||||..+.++++|||++|+++|++.
T Consensus 84 ki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~ 162 (194)
T 4fno_A 84 RIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQEL 162 (194)
Confidence 999999999999999999999999999999999999999999 68 8999999999999645579999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 027817 176 IDTALQEGVEVLKLLLSKGLTESARHFNTI 205 (218)
Q Consensus 176 l~~~i~~a~~~~~~~i~~~~~~amn~~n~~ 205 (218)
++++++.|++|++.|+++++++|||+||..
T Consensus 163 l~~~i~~a~~a~~~~~~~~~~~amn~~n~~ 192 (194)
T 4fno_A 163 LDTSIDFALGVLPEMLAGDWTRAMQKLHSQ 192 (194)
Confidence 999999999999999999999999999973
No 9
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=88.75 E-value=4.3 Score=32.20 Aligned_cols=134 Identities=21% Similarity=0.254 Sum_probs=72.1
Q ss_pred CeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcC
Q 027817 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYK 97 (218)
Q Consensus 18 ~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~k 97 (218)
+.+|+|+|||-. .===+|..++++|.+++..+. .+-++--.| .|..+...+.
T Consensus 2 ~ilVlGiGN~l~----gDDG~G~~v~~~L~~~~~~p~-----------------~v~vid~gt----~~~~l~~~l~--- 53 (162)
T 1cfz_A 2 RILVLGVGNILL----TDEAIGVRIVEALEQRYILPD-----------------YVEILDGGT----AGMELLGDMA--- 53 (162)
T ss_dssp CEEEEEESCTTB----GGGGHHHHHHHHHHHHEECCT-----------------TEEEEEEET----CCGGGHHHHS---
T ss_pred CEEEEEECCccc----ccccHHHHHHHHHHhhCCCCC-----------------CeEEEECCC----CHHHHHHHHh---
Confidence 368999999942 223699999999998754321 111111101 1222211111
Q ss_pred CCCCcEEEEee---cCCCCCceEEEecC--------CCCCCCC-chhhHHHhhcCCCCcc-EE-EEeecCCCCCCCcccc
Q 027817 98 LPLNRVLVFHD---DMGLPCGVLRLRHN--------GGHGGHN-GLKSVMNNFRGNREFA-RL-RIGIGRPPGQMDPKAF 163 (218)
Q Consensus 98 i~~~~ilVihD---Dldlp~G~vrlk~g--------Gs~gGHN-GLkSIi~~L~gt~~f~-Rl-rIGIGrP~~~~~v~~y 163 (218)
-.+.+||.| +.+.++|+++.-.. .+...|+ |+..+.+.+.-..+++ ++ =||| .|. ++ ++
T Consensus 54 --~~d~lIiVDA~~~~g~~PGti~~~~~~~l~~~~~~~~s~H~~~l~~~L~~~~~~g~~P~~v~ligi-~p~---~~-~~ 126 (162)
T 1cfz_A 54 --NRDHLIIADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGV-IPE---SL-EP 126 (162)
T ss_dssp --SCSEEEEEEECCSSCSCTTCEEEEETTHHHHHHCCSSCHHHHHHHHHHHHHHHTTCCCSEEEEEEE-CCS---CC-CS
T ss_pred --CCCEEEEEEehhhcCCCCCEEEEEchHHcchhccCCcCCCcCCHHHHHHHHHHcCCCCCeEEEEEE-EEe---Ec-CC
Confidence 236777778 66889999886321 1223344 7777777652123455 33 4577 343 22 33
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHH
Q 027817 164 LLQKFNAIARERIDTALQEGVEVL 187 (218)
Q Consensus 164 VLs~f~~~E~~~l~~~i~~a~~~~ 187 (218)
-...|++=++.++++++.+.+.+
T Consensus 127 -g~~LS~~v~~av~~a~~~i~~~l 149 (162)
T 1cfz_A 127 -HIGLTPTVEAMIEPALEQVLAAL 149 (162)
T ss_dssp -BSSCCHHHHTTHHHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHH
Confidence 34566665555555544444433
No 10
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=55.19 E-value=4.7 Score=30.58 Aligned_cols=41 Identities=32% Similarity=0.521 Sum_probs=30.1
Q ss_pred EEEeecCCCCCceEEEe--cCCCCCCCCchhhHHHhhcCCCCccEEEEeec
Q 027817 104 LVFHDDMGLPCGVLRLR--HNGGHGGHNGLKSVMNNFRGNREFARLRIGIG 152 (218)
Q Consensus 104 lVihDDldlp~G~vrlk--~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIG 152 (218)
+.|.+++++|...++++ +.+|+||.| ++ .++.=.||+.=+.
T Consensus 2 l~i~~~i~I~~~dl~~~~~RssGpGGQn-----VN---Kv~SaV~L~~d~~ 44 (108)
T 2jva_A 2 LVISNNVHLPDAEIELTAIRAQGAGGQN-----VN---KVSSAMHLRFDIN 44 (108)
T ss_dssp EECSSSCEECGGGEEEEECCCTTCSSSS-----SC---CCCCCEEEEEETT
T ss_pred cccccccccChHHEEEEEEECCCCCCCC-----cC---CCcceEEEEEEcc
Confidence 45778899999988887 688999987 22 3344578887664
No 11
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=49.05 E-value=3.8 Score=32.45 Aligned_cols=41 Identities=27% Similarity=0.478 Sum_probs=29.5
Q ss_pred EEEeecCCCCCceEEEe--cCCCCCCCCchhhHHHhhcCCCCccEEEEeec
Q 027817 104 LVFHDDMGLPCGVLRLR--HNGGHGGHNGLKSVMNNFRGNREFARLRIGIG 152 (218)
Q Consensus 104 lVihDDldlp~G~vrlk--~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIG 152 (218)
+.|.+++++|...+++. ..+|+||.|= + .++.=.+|++=|.
T Consensus 2 ~~i~~~i~I~~~el~~~~~RssGpGGQnV-----N---Kv~SaV~L~~~~~ 44 (140)
T 4dh9_Y 2 IVISRHVAIPDGELEITAIRAQGAGGQHV-----N---KTSTAIHLRFDIR 44 (140)
T ss_dssp CCCCSSSCCCTTCSEEEEECCCSSSSHHH-----H---TTCCCEEEEECCS
T ss_pred ccccCCCccChHHeEEEEEECCCCCCCcc-----c---cccceEEEEEecc
Confidence 55789999999988887 5788999662 2 2344577877554
No 12
>2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} SCOP: d.110.8.1 PDB: 2jn7_A
Probab=45.29 E-value=22 Score=26.90 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=27.6
Q ss_pred cccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027817 161 KAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 194 (218)
Q Consensus 161 ~~yVLs~f~~~E~~~l~~~i~~a~~~~~~~i~~~ 194 (218)
++++ +.||++|...|+++++...+-++..+..|
T Consensus 34 Agi~-G~Fs~~~~~~Ld~aFP~~ikqlE~mL~sG 66 (105)
T 2ea9_A 34 ASIT-GKFSDAECPKLDVVFPHFISQIESMLTTG 66 (105)
T ss_dssp EEEE-SCCCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCee-EecCHHHHHHHHHHhHHHHHHHHHHhccC
Confidence 4444 89999999999999999999888877643
No 13
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=44.06 E-value=12 Score=23.68 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=22.0
Q ss_pred ecCCCCCCCccc-cccCcCCHHHHHHHHHHHHHH
Q 027817 151 IGRPPGQMDPKA-FLLQKFNAIARERIDTALQEG 183 (218)
Q Consensus 151 IGrP~~~~~v~~-yVLs~f~~~E~~~l~~~i~~a 183 (218)
.|||.......+ .+-=+++++|.+.|++....+
T Consensus 4 ~~R~k~~~r~r~~~i~vRlt~eE~~~l~~~A~~~ 37 (51)
T 2ba3_A 4 AVRKKSEVRQKTVVRTLRFSPVEDETIRKKAEDS 37 (51)
T ss_dssp TTBCTTCCCCCSEEEEEEECHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCcCceeEEEEECHHHHHHHHHHHHHh
Confidence 578865323333 444589999999998765544
No 14
>2inw_A Putative structural protein; Q83JN9 X-RAY NESG SFR137, structural genomics, PSI-2, protei structure initiative; 1.50A {Shigella flexneri} SCOP: d.110.8.1 PDB: 2h28_A
Probab=44.04 E-value=28 Score=27.23 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=27.5
Q ss_pred cccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027817 161 KAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 194 (218)
Q Consensus 161 ~~yVLs~f~~~E~~~l~~~i~~a~~~~~~~i~~~ 194 (218)
++++ +.||++|...|+++++...+-++..+..|
T Consensus 48 Agi~-G~Fs~~~~~~Ld~aFP~~ikQlE~mL~sG 80 (133)
T 2inw_A 48 AGIR-GRFSDVDAYHLDQAFPLLMKQLELMLTGG 80 (133)
T ss_dssp EEEE-SCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCee-EecCHHHHHHHHHHhHHHHHHHHHHhccc
Confidence 3444 89999999999999999999888887643
No 15
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=42.13 E-value=23 Score=31.20 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=29.0
Q ss_pred CCCcccccchhHHHHHHHcCCCCCcEEEEeecCCCC
Q 027817 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLP 113 (218)
Q Consensus 78 P~TyMN~SG~aV~~~~~~~ki~~~~ilVihDDldlp 113 (218)
|...|=-|-+...+.+...+|..++.||||||-+.-
T Consensus 90 ~~ph~LP~~~~f~~~l~~lGI~~d~~VVvYD~~~~~ 125 (327)
T 3utn_X 90 PYPHMFPTKKVFDDAMSNLGVQKDDILVVYDRVGNF 125 (327)
T ss_dssp SSTTCCCCHHHHHHHHHHTTCCTTCEEEEECSSSSS
T ss_pred CCCCCCcCHHHHHHHHHHcCCCCCCEEEEEeCCCCc
Confidence 344566677778888999999999999999997654
No 16
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=36.55 E-value=36 Score=26.71 Aligned_cols=132 Identities=15% Similarity=0.163 Sum_probs=70.0
Q ss_pred CeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcC
Q 027817 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYK 97 (218)
Q Consensus 18 ~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~k 97 (218)
+.+|+|+|||-. .===+|..++++|.+.+. . .+-++--.| .|..+...+..+
T Consensus 5 ~~lVlGiGN~l~----gDDG~G~~v~~~L~~~~~---~----------------~v~vid~gt----~~~~l~~~l~~~- 56 (159)
T 2e85_A 5 TDVLLCVGNSMM----GDDGAGPLLAEKCAAAPK---G----------------NWVVIDGGS----APENDIVAIREL- 56 (159)
T ss_dssp CEEEEEECCGGG----GGGGHHHHHHHHHHHSCC---T----------------TCEEEECTT----CSGGGHHHHHHH-
T ss_pred CEEEEEECCccc----ccccHHHHHHHHHhhhCC---C----------------CeEEEECCC----CHHHHHHHHhcC-
Confidence 469999999942 223699999999987531 0 111111111 122222222221
Q ss_pred CCCCcEEEEee--cCCCCCceEEEec------C-CCCCCCCchhhHHHhhcCCCCccEEE-EeecCCCCCCCccccccCc
Q 027817 98 LPLNRVLVFHD--DMGLPCGVLRLRH------N-GGHGGHNGLKSVMNNFRGNREFARLR-IGIGRPPGQMDPKAFLLQK 167 (218)
Q Consensus 98 i~~~~ilVihD--Dldlp~G~vrlk~------g-Gs~gGHNGLkSIi~~L~gt~~f~Rlr-IGIGrP~~~~~v~~yVLs~ 167 (218)
. -+.+||.| +.+.++|+++.-. . .-+..+-|+..+++.|. ...+++. ||| .|. ++ +| =..
T Consensus 57 -~-~d~lIiVDA~~~g~~PGti~~~~~~~l~~~~~~s~H~~~l~~~L~~l~--~~~p~v~liGi-~p~---~~-~~-g~~ 126 (159)
T 2e85_A 57 -R-PTRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLK--EDIGEVIFLGI-QPD---IV-GF-YYP 126 (159)
T ss_dssp -C-CSEEEEEEECCCSSCTTCEEECCHHHHHHTTCBCTTCCBHHHHHHHHH--HHHSEEEEEEE-CCS---CC-CT-TCC
T ss_pred -C-CCEEEEEEeCCCCCCCCEEEEechhHcccccCCCCCcCCHHHHHHHHh--CCCCcEEEEEE-EEe---Ec-CC-CCC
Confidence 2 24555667 4678999998521 1 22344459999998884 2344543 577 343 22 22 124
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 027817 168 FNAIARERIDTALQEGVEVLKLLL 191 (218)
Q Consensus 168 f~~~E~~~l~~~i~~a~~~~~~~i 191 (218)
.|++=++ .++.+++.+..|+
T Consensus 127 LS~~v~~----av~~a~~~l~~~~ 146 (159)
T 2e85_A 127 MTQPIKD----AVETVYQRLEGWE 146 (159)
T ss_dssp CCHHHHH----HHHHHHTTSTTCC
T ss_pred CCHHHHH----HHHHHHHHHHHHh
Confidence 5554443 4445555555444
No 17
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=34.02 E-value=47 Score=24.48 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=25.4
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHHHH
Q 027817 162 AFLLQKFNAIARERIDTALQEGVEVLKLLL 191 (218)
Q Consensus 162 ~yVLs~f~~~E~~~l~~~i~~a~~~~~~~i 191 (218)
+++++.|+++|++.+..++.+..+.++.+.
T Consensus 118 ~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~ 147 (149)
T 4hbl_A 118 SCLPQEFDTTEYDETKYVFEELEQTLKHLI 147 (149)
T ss_dssp TTSCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 448899999999999999988888877654
No 18
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=33.63 E-value=43 Score=26.87 Aligned_cols=41 Identities=7% Similarity=0.142 Sum_probs=30.6
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhhhc
Q 027817 164 LLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 204 (218)
Q Consensus 164 VLs~f~~~E~~~l~~~i~~a~~~~~~~i~~~~~~amn~~n~ 204 (218)
=|..|+|+-++.+.-.+-+-..++..+.+.+++.||+++..
T Consensus 82 gl~~F~P~~QD~~A~~Li~~rgal~~i~~G~i~~a~~~la~ 122 (158)
T 1am7_A 82 GLKDFSPKSQDAVALQQIKERGALPMIDRGDIRQAIDRCSN 122 (158)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTTCHHHHHHTCHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHcCcHHHHHcCCHHHHHHHhcc
Confidence 36689999998775433334457888888899999998874
No 19
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.67 E-value=75 Score=25.12 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=18.6
Q ss_pred cCcCCHHHHHHHHHHHHHHHH
Q 027817 165 LQKFNAIARERIDTALQEGVE 185 (218)
Q Consensus 165 Ls~f~~~E~~~l~~~i~~a~~ 185 (218)
||.+|++|++.|.+++.+..+
T Consensus 14 Ls~LteeEr~~Il~VL~Rd~~ 34 (153)
T 2zet_C 14 LSTLTDEEAEHVWAVVQRDFD 34 (153)
T ss_dssp CTTSCHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHhHHH
Confidence 799999999999999988654
No 20
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.60A {Wolinella succinogenes}
Probab=28.68 E-value=64 Score=25.26 Aligned_cols=135 Identities=14% Similarity=0.037 Sum_probs=65.5
Q ss_pred CeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcC
Q 027817 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYK 97 (218)
Q Consensus 18 ~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~k 97 (218)
+.||+|+|||-. .===+|..++++|++.+. . +.++--. ..|..+...++..
T Consensus 4 ~ilVlGiGN~L~----gDDG~G~~v~~~L~~~~p--------~------------v~vid~G----t~~~~l~~~l~~~- 54 (157)
T 3pu6_A 4 KKVLLCVGNELR----GDDGVAIALGRLVEEQMP--------E------------WSVFFGY----DTPESEFGKLREL- 54 (157)
T ss_dssp CEEEEEECCTTB----GGGGHHHHHHHHHHHHCT--------T------------EEEEEEE----TCGGGGHHHHHHH-
T ss_pred CEEEEEECCccc----ccccHHHHHHHHHHhhCC--------C------------eEEEECC----CCHHHHHHHHHhc-
Confidence 368999999942 333589999999984321 0 1111110 1233222223321
Q ss_pred CCCCcEEEEeec-CCCCCceEEEecCC------CCCCCCchhhHHHhhcCCCCccEEE-EeecCCCCCCCccccccCcCC
Q 027817 98 LPLNRVLVFHDD-MGLPCGVLRLRHNG------GHGGHNGLKSVMNNFRGNREFARLR-IGIGRPPGQMDPKAFLLQKFN 169 (218)
Q Consensus 98 i~~~~ilVihDD-ldlp~G~vrlk~gG------s~gGHNGLkSIi~~L~gt~~f~Rlr-IGIGrP~~~~~v~~yVLs~f~ 169 (218)
.++ .+||.|= .+.++|+++.-..- -+...-|+..+++.+.. ..+++. |||- |.. .+..+|- ...|
T Consensus 55 -~~d-~lIiVDA~~g~~PGti~~~~~~~~~~~~~s~H~~~l~~~L~~l~~--~~p~v~liGie-p~~-~~~~~~g-~~LS 127 (157)
T 3pu6_A 55 -APD-VIVVADAMSGFKEGEIEFLDLSDERTYLYSTHNLPTPILISYLRG--ICSKTIFLGIS-VLL-ENVLHFS-EGLS 127 (157)
T ss_dssp -CCS-EEEEEEEEEC----CEEEEETTSHHHHHC-----CCHHHHHHHHH--HCSEEEEEEEE-ECG-GGGSSCB-CSCC
T ss_pred -CCC-EEEEEEecCCCCCcEEEEEchhHhcCCCCCCCCCCHHHHHHHHHc--cCCCEEEEEEE-Eee-cCCCCCC-CCCC
Confidence 234 4444454 47789999865432 24455688888888742 245554 4664 321 1122332 2466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027817 170 AIARERIDTALQEGVEVLKLLLS 192 (218)
Q Consensus 170 ~~E~~~l~~~i~~a~~~~~~~i~ 192 (218)
++=+ +.++.|++.+..|+.
T Consensus 128 ~~V~----~av~~a~~~i~~~~~ 146 (157)
T 3pu6_A 128 QGAS----DSAFVALGRIKELDG 146 (157)
T ss_dssp HHHH----HHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHh
Confidence 5444 455566666666664
No 21
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=28.17 E-value=72 Score=23.31 Aligned_cols=30 Identities=10% Similarity=0.064 Sum_probs=22.3
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHHHH
Q 027817 162 AFLLQKFNAIARERIDTALQEGVEVLKLLL 191 (218)
Q Consensus 162 ~yVLs~f~~~E~~~l~~~i~~a~~~~~~~i 191 (218)
+-+++.++++|++.+.+++.+..+.++.+.
T Consensus 119 ~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~ 148 (151)
T 3kp7_A 119 SDMTSDFDSKEIEKVRQVLEIIDYRIQSYT 148 (151)
T ss_dssp HHTTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888887777777666543
No 22
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=28.16 E-value=66 Score=23.15 Aligned_cols=32 Identities=9% Similarity=0.020 Sum_probs=24.4
Q ss_pred cccccCcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 027817 161 KAFLLQKFNAIARERIDTALQEGVEVLKLLLS 192 (218)
Q Consensus 161 ~~yVLs~f~~~E~~~l~~~i~~a~~~~~~~i~ 192 (218)
.+.+++.++++|.+.+.+++.+..+.++..++
T Consensus 108 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~~ 139 (144)
T 1lj9_A 108 NQVALQGLSEVEISQLADYLVRMRKNVSEDWE 139 (144)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHH
Confidence 35677889999998888888887777665543
No 23
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=27.89 E-value=1.3e+02 Score=20.78 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=25.3
Q ss_pred cCcCCHHHHHHHHHHHHHH---HHHHHHHHhcCHHHHHHhhhc
Q 027817 165 LQKFNAIARERIDTALQEG---VEVLKLLLSKGLTESARHFNT 204 (218)
Q Consensus 165 Ls~f~~~E~~~l~~~i~~a---~~~~~~~i~~~~~~amn~~n~ 204 (218)
-++||+||-+.|-+++..- ...|...+...-..+.|+++.
T Consensus 23 k~~wT~EED~~L~~l~~~~G~kW~~IA~~lgRt~~q~knRw~~ 65 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRL 65 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 4799999999887776652 222222234456666677664
No 24
>1c8b_A Spore protease; novel fold, hydrolase; 3.00A {Bacillus megaterium} SCOP: c.56.1.2
Probab=25.80 E-value=51 Score=30.06 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=57.7
Q ss_pred CCCCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEE--CCeeEEEEeC----CCcccccchh
Q 027817 15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFV--GDAPVLLAKP----QTYMNLSGES 88 (218)
Q Consensus 15 ~~~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~--~~~~v~L~KP----~TyMN~SG~a 88 (218)
.....|||||||.- -|--..|-.+++.|. ++ ..-+. ++...+ .-..|.-+-| +|=||. ++.
T Consensus 111 ~~~~iLVVGLGN~~----vTpDALGP~Vv~~l~----vT--rHl~~--~g~~~~~~~~~pVsAiaPGVmg~TGiEt-~Ei 177 (371)
T 1c8b_A 111 DDASCLVVGLGNLS----VTPDALGPKAVDNLL----IT--RHLFE--LQPESVQDGFRPVSAIVPGVMGMTGIET-SDI 177 (371)
T ss_dssp TTCCEEEEECSCSS----SGGGCHHHHHHTTCC----CC--HHHHH--HSCCSSCSSCCCEEEECSGGGCCCSSCH-HHH
T ss_pred CCCcEEEEEcCCCC----cCccccCcceeeeee----EE--eehhh--hCchhhccCCCceEEecCCccccccccH-HHH
Confidence 35568999999974 588999999998653 11 10010 111001 1235555566 566775 566
Q ss_pred HHHHHHHcCCCCCcEEEEeecCCC----CCc-eEEEecCC
Q 027817 89 TGPLAAYYKLPLNRVLVFHDDMGL----PCG-VLRLRHNG 123 (218)
Q Consensus 89 V~~~~~~~ki~~~~ilVihDDldl----p~G-~vrlk~gG 123 (218)
++.+.+.++ -+++|.-|-|-. -+| +|.+...|
T Consensus 178 I~gIv~k~k---Pd~VIAIDALAars~~Rl~~TIQIsdTG 214 (371)
T 1c8b_A 178 IFGVVKKVN---PDFIIAIDALAARSIERVNATIQISDSG 214 (371)
T ss_dssp HHHHHHHHC---CSEEEEEEEECCSSGGGSSSEEEEETTC
T ss_pred HHHHHHhcC---CCEEEEEchhhcCcHhhcCCeEEECCCC
Confidence 777877765 567777788654 356 78887666
No 25
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=25.38 E-value=44 Score=25.39 Aligned_cols=30 Identities=10% Similarity=-0.045 Sum_probs=22.3
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHHHH
Q 027817 162 AFLLQKFNAIARERIDTALQEGVEVLKLLL 191 (218)
Q Consensus 162 ~yVLs~f~~~E~~~l~~~i~~a~~~~~~~i 191 (218)
+-+++.++++|++.+.+++.+..+.++.+.
T Consensus 134 ~~~~~~l~~~e~~~l~~~L~~l~~~l~~~~ 163 (166)
T 3deu_A 134 GEILAGISSEEIELLIKLIAKLEHNIMELH 163 (166)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888888887777776544
No 26
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=24.70 E-value=1.5e+02 Score=20.34 Aligned_cols=40 Identities=8% Similarity=0.131 Sum_probs=28.9
Q ss_pred CcCCHHHHHHHHHHHHHH-------HHHHHHHHhcCHHHHHHhhhch
Q 027817 166 QKFNAIARERIDTALQEG-------VEVLKLLLSKGLTESARHFNTI 205 (218)
Q Consensus 166 s~f~~~E~~~l~~~i~~a-------~~~~~~~i~~~~~~amn~~n~~ 205 (218)
+.+|.+|.+.|++++... .+.|...+....+.+.++|+..
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L 55 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 579999999998876654 4445555556688888887754
No 27
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=24.04 E-value=60 Score=21.51 Aligned_cols=39 Identities=28% Similarity=0.397 Sum_probs=17.1
Q ss_pred HHHHcCCCCCcEEEEe------ecCCC-----CCc---eEEEecCCCCCCCCc
Q 027817 92 LAAYYKLPLNRVLVFH------DDMGL-----PCG---VLRLRHNGGHGGHNG 130 (218)
Q Consensus 92 ~~~~~ki~~~~ilVih------DDldl-----p~G---~vrlk~gGs~gGHNG 130 (218)
+.+..++|+++.-++| ||..| .-| .+-+|..|+.|||.|
T Consensus 33 i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ggg~~ 85 (85)
T 3mtn_B 33 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGGGGGSG 85 (85)
T ss_dssp HHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC------
T ss_pred HHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCCCCCCC
Confidence 4456788887655444 33222 222 233466677777765
No 28
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=23.96 E-value=43 Score=26.69 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=22.5
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeecC
Q 027817 85 SGESTGPLAAYYKLPLNRVLVFHDDM 110 (218)
Q Consensus 85 SG~aV~~~~~~~ki~~~~ilVihDDl 110 (218)
-|.++..+++.++++++++++|=|..
T Consensus 201 K~~~l~~l~~~lgi~~~~~i~~GD~~ 226 (274)
T 3fzq_A 201 KGKAIKRLQERLGVTQKETICFGDGQ 226 (274)
T ss_dssp HHHHHHHHHHHHTCCSTTEEEECCSG
T ss_pred HHHHHHHHHHHcCCCHHHEEEECCCh
Confidence 36778899999999999999999853
No 29
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=23.38 E-value=52 Score=22.66 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=27.5
Q ss_pred chhHHHHHHHcCCCCCcEEEEeecCCCCCce
Q 027817 86 GESTGPLAAYYKLPLNRVLVFHDDMGLPCGV 116 (218)
Q Consensus 86 G~aV~~~~~~~ki~~~~ilVihDDldlp~G~ 116 (218)
|..|+.+++.++++++.++|..+.--+|...
T Consensus 20 g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 20 DGTYADLVRAVDLSPHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp TCSHHHHHHTTCCCSSCCCEECCCCCCCTTS
T ss_pred CCcHHHHHHHcCCCcceEEEEECCEECCHHH
Confidence 6789999999999999999999888777776
No 30
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=23.36 E-value=42 Score=26.84 Aligned_cols=24 Identities=17% Similarity=0.458 Sum_probs=22.2
Q ss_pred chhHHHHHHHcCCCCCcEEEEeec
Q 027817 86 GESTGPLAAYYKLPLNRVLVFHDD 109 (218)
Q Consensus 86 G~aV~~~~~~~ki~~~~ilVihDD 109 (218)
|.++..+++.+++++++++.|=|.
T Consensus 196 ~~~l~~l~~~lgi~~~~~ia~GD~ 219 (268)
T 3r4c_A 196 ATGLSLFADYYRVKVSEIMACGDG 219 (268)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHcCCCHHHEEEECCc
Confidence 588999999999999999999995
No 31
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=23.12 E-value=52 Score=24.75 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=25.4
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeecC--CCC
Q 027817 85 SGESTGPLAAYYKLPLNRVLVFHDDM--GLP 113 (218)
Q Consensus 85 SG~aV~~~~~~~ki~~~~ilVihDDl--dlp 113 (218)
++.++..+++.++++++++++|=|.+ |+.
T Consensus 159 k~~~~~~~~~~lgi~~~~~i~iGD~~~~Di~ 189 (234)
T 3ddh_A 159 TEKEYLRLLSILQIAPSELLMVGNSFKSDIQ 189 (234)
T ss_dssp SHHHHHHHHHHHTCCGGGEEEEESCCCCCCH
T ss_pred CHHHHHHHHHHhCCCcceEEEECCCcHHHhH
Confidence 68888999999999999999999986 554
No 32
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=21.56 E-value=48 Score=26.86 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=39.1
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCC-CCCcccc
Q 027817 85 SGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPG-QMDPKAF 163 (218)
Q Consensus 85 SG~aV~~~~~~~ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~-~~~v~~y 163 (218)
-|.++..+++.++++++++++|=|. .|.+.-+. .. | +.+..|...+ -...++|
T Consensus 203 K~~~l~~l~~~lgi~~~~~i~~GD~------------------~NDi~m~~-~a-g------~~vam~na~~~~k~~Ad~ 256 (290)
T 3dnp_A 203 KEAGLALVASELGLSMDDVVAIGHQ------------------YDDLPMIE-LA-G------LGVAMGNAVPEIKRKADW 256 (290)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECS------------------GGGHHHHH-HS-S------EEEECTTSCHHHHHHSSE
T ss_pred HHHHHHHHHHHcCCCHHHEEEECCc------------------hhhHHHHH-hc-C------CEEEecCCcHHHHHhcCE
Confidence 3678899999999999999999994 56655432 22 2 4566664221 1245799
Q ss_pred ccCcC
Q 027817 164 LLQKF 168 (218)
Q Consensus 164 VLs~f 168 (218)
|....
T Consensus 257 v~~s~ 261 (290)
T 3dnp_A 257 VTRSN 261 (290)
T ss_dssp ECCCT
T ss_pred ECCCC
Confidence 98654
No 33
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=21.35 E-value=51 Score=26.99 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=22.3
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeec
Q 027817 85 SGESTGPLAAYYKLPLNRVLVFHDD 109 (218)
Q Consensus 85 SG~aV~~~~~~~ki~~~~ilVihDD 109 (218)
-|.++..+++.++++++++++|=|.
T Consensus 212 K~~~l~~l~~~lgi~~~e~ia~GD~ 236 (283)
T 3dao_A 212 KWTALSYLIDRFDLLPDEVCCFGDN 236 (283)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHHhCCCHHHEEEECCC
Confidence 3678999999999999999999994
No 34
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=21.22 E-value=73 Score=19.64 Aligned_cols=30 Identities=20% Similarity=0.115 Sum_probs=18.4
Q ss_pred cCCCCCCCccccccCcCCHHHHHHHHHHHHH
Q 027817 152 GRPPGQMDPKAFLLQKFNAIARERIDTALQE 182 (218)
Q Consensus 152 GrP~~~~~v~~yVLs~f~~~E~~~l~~~i~~ 182 (218)
|||.... -..-+-=+++++..+.|+.....
T Consensus 1 GRP~~~~-~~~~i~vrl~~el~~~l~~~a~~ 30 (55)
T 2k9i_A 1 GRPYKLL-NGIKLGVYIPQEWHDRLMEIAKE 30 (55)
T ss_dssp CCCSSTT-CCEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCCCCC-ccceEEEEcCHHHHHHHHHHHHH
Confidence 7885321 12233347888888888876544
No 35
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=21.01 E-value=45 Score=26.86 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=20.7
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeec
Q 027817 85 SGESTGPLAAYYKLPLNRVLVFHDD 109 (218)
Q Consensus 85 SG~aV~~~~~~~ki~~~~ilVihDD 109 (218)
-|.++..+++.++++++++++|=|.
T Consensus 198 K~~~l~~l~~~lgi~~~~~i~~GD~ 222 (279)
T 3mpo_A 198 KGGTLSELVDQLGLTADDVMTLGDQ 222 (279)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEC--C
T ss_pred hHHHHHHHHHHcCCCHHHEEEECCc
Confidence 4788999999999999999999984
No 36
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=20.84 E-value=47 Score=26.75 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=22.4
Q ss_pred chhHHHHHHHcCCCCCcEEEEeec
Q 027817 86 GESTGPLAAYYKLPLNRVLVFHDD 109 (218)
Q Consensus 86 G~aV~~~~~~~ki~~~~ilVihDD 109 (218)
|.++..+++.++++++++++|=|.
T Consensus 199 ~~~l~~l~~~lgi~~~~~i~~GD~ 222 (279)
T 4dw8_A 199 ALSLSVLLENIGMTREEVIAIGDG 222 (279)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEECS
T ss_pred HHHHHHHHHHcCCCHHHEEEECCC
Confidence 888999999999999999999994
No 37
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=20.84 E-value=1e+02 Score=23.73 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=17.4
Q ss_pred cCcCCHHHHHHHHHHHHHHHH
Q 027817 165 LQKFNAIARERIDTALQEGVE 185 (218)
Q Consensus 165 Ls~f~~~E~~~l~~~i~~a~~ 185 (218)
||..|++|++.|.+++.+..+
T Consensus 7 ls~LteeE~~~Il~Vl~Rd~~ 27 (134)
T 1zbd_B 7 QEELTDEEKEIINRVIARAEK 27 (134)
T ss_dssp -CCCCSSHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhHHH
Confidence 578899999999999888665
No 38
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=20.73 E-value=43 Score=26.75 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=38.3
Q ss_pred chhHHHHHHHcCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCC-CCccccc
Q 027817 86 GESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQ-MDPKAFL 164 (218)
Q Consensus 86 G~aV~~~~~~~ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~-~~v~~yV 164 (218)
|.++..+++.+++++++++++=|. .|.+.-+.. - | +.+-+|..... ...++||
T Consensus 185 ~~~l~~l~~~lgi~~~~~ia~GDs------------------~NDi~ml~~-a-g------~~vam~na~~~~k~~A~~v 238 (258)
T 2pq0_A 185 AEGIRMMIEKLGIDKKDVYAFGDG------------------LNDIEMLSF-V-G------TGVAMGNAHEEVKRVADFV 238 (258)
T ss_dssp HHHHHHHHHHHTCCGGGEEEECCS------------------GGGHHHHHH-S-S------EEEEETTCCHHHHHTCSEE
T ss_pred HHHHHHHHHHhCCCHHHEEEECCc------------------HHhHHHHHh-C-C------cEEEeCCCcHHHHHhCCEE
Confidence 667899999999999999999994 577665432 2 2 34445542211 2357999
Q ss_pred cCcC
Q 027817 165 LQKF 168 (218)
Q Consensus 165 Ls~f 168 (218)
....
T Consensus 239 ~~~~ 242 (258)
T 2pq0_A 239 TKPV 242 (258)
T ss_dssp ECCG
T ss_pred eCCC
Confidence 8654
No 39
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=20.72 E-value=51 Score=26.95 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.6
Q ss_pred chhHHHHHHHcCCCCCcEEEEeecC
Q 027817 86 GESTGPLAAYYKLPLNRVLVFHDDM 110 (218)
Q Consensus 86 G~aV~~~~~~~ki~~~~ilVihDDl 110 (218)
|.++..+++.++++++++++|=|..
T Consensus 211 ~~al~~l~~~lgi~~~~~ia~GD~~ 235 (285)
T 3pgv_A 211 GHALEAVAKMLGYTLSDCIAFGDGM 235 (285)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHhCCCHHHEEEECCcH
Confidence 7889999999999999999999953
No 40
>2aby_A Hypothetical protein TA0743; helix-turn-helix, unknown function; NMR {Thermoplasma acidophilum}
Probab=20.55 E-value=1.6e+02 Score=22.90 Aligned_cols=39 Identities=13% Similarity=0.298 Sum_probs=29.0
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhhhchhhhhh
Q 027817 165 LQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKH 210 (218)
Q Consensus 165 Ls~f~~~E~~~l~~~i~~a~~~~~~~i~~~~~~amn~~n~~~~~~~ 210 (218)
|++|.+++++.+.+-++... +-..+..|++||-..+...
T Consensus 82 l~~lHpe~rkk~re~FD~~S-------k~~Y~elm~kY~el~k~g~ 120 (146)
T 2aby_A 82 LSELHPEERKKVREKFDENS-------RMQYSELMTKYHDLKKQGK 120 (146)
T ss_dssp CCSCCHHHHHHHHHHHHHHH-------HSCHHHHHHHHHGGGGTCC
T ss_pred hhhhCHHHHHHHHHHhhhhh-------hhhHHHHHHHHHHHHhcCC
Confidence 68999999998877665533 2467899999997555443
No 41
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=20.01 E-value=56 Score=27.04 Aligned_cols=57 Identities=11% Similarity=0.192 Sum_probs=38.3
Q ss_pred chhHHHHHHHcCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCC-CCCccccc
Q 027817 86 GESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPG-QMDPKAFL 164 (218)
Q Consensus 86 G~aV~~~~~~~ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~-~~~v~~yV 164 (218)
|.++..+++.++++++++++|=|. .|.+.-+ +.. | +.+..|.... -...++||
T Consensus 230 ~~al~~l~~~lgi~~~e~i~~GDs------------------~NDi~m~-~~a-g------~~vam~na~~~~k~~Ad~v 283 (304)
T 3l7y_A 230 GWALQQLLKRWNFTSDHLMAFGDG------------------GNDIEML-KLA-K------YSYAMANAPKNVKAAANYQ 283 (304)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECS------------------GGGHHHH-HHC-T------EEEECTTSCHHHHHHCSEE
T ss_pred HHHHHHHHHHhCcCHHHEEEECCC------------------HHHHHHH-Hhc-C------CeEEcCCcCHHHHHhccEE
Confidence 568999999999999999999994 4555432 222 2 5555664221 12457999
Q ss_pred cCcC
Q 027817 165 LQKF 168 (218)
Q Consensus 165 Ls~f 168 (218)
....
T Consensus 284 ~~~~ 287 (304)
T 3l7y_A 284 AKSN 287 (304)
T ss_dssp CCCG
T ss_pred cCCC
Confidence 8744
Done!