Query 027818
Match_columns 218
No_of_seqs 120 out of 237
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 15:39:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03998 Utp11: Utp11 protein; 100.0 9.7E-69 2.1E-73 471.6 18.5 194 10-203 1-219 (243)
2 KOG3237 Uncharacterized conser 100.0 2.4E-67 5.3E-72 457.8 16.5 202 1-202 1-227 (250)
3 COG5223 Uncharacterized conser 100.0 7.5E-50 1.6E-54 342.3 11.7 202 1-205 1-223 (240)
4 PF10241 KxDL: Uncharacterized 38.8 42 0.0009 25.4 3.4 24 40-63 65-88 (88)
5 cd07605 I-BAR_IMD Inverse (I)- 23.8 99 0.0022 27.4 3.6 31 32-62 119-149 (223)
6 PF10258 RNA_GG_bind: PHAX RNA 18.8 1.4E+02 0.003 22.8 3.1 69 26-94 9-79 (87)
7 COG4549 Uncharacterized protei 16.8 47 0.001 28.8 0.1 11 58-68 108-118 (178)
8 PF02202 Tachykinin: Tachykini 15.9 19 0.00042 17.9 -1.5 7 59-65 3-9 (11)
9 PF05370 DUF749: Domain of unk 15.5 19 0.00042 27.9 -2.3 43 100-143 20-63 (87)
10 PF06881 Elongin_A: RNA polyme 14.4 2.1E+02 0.0047 22.0 3.2 38 100-137 68-108 (109)
No 1
>PF03998 Utp11: Utp11 protein; InterPro: IPR007144 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp11, a large ribonuclear protein that associates with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=100.00 E-value=9.7e-69 Score=471.64 Aligned_cols=194 Identities=48% Similarity=0.742 Sum_probs=178.4
Q ss_pred cccccccCCcchhhccccccccccHHHHHHHHhHHHHHHHHHHHHHhhhCCCcchhhhhhccccC-CcccccCC-CCCCC
Q 027818 10 RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVD-GVHRLEGE-ANKYT 87 (218)
Q Consensus 10 rr~HrER~Qp~~R~~lGlLEKkKDY~~RA~dy~~K~~~lk~Lr~KA~~rNpDEFyf~M~~sk~~~-G~h~~~~~-~~~~t 87 (218)
||+|+|||||++|+|||||||||||++||+|||+|+++|+.|++||++||||||||||||+++.+ |+|+..++ ++.+|
T Consensus 1 rr~HrERsQP~~R~~lGlLEKkKDY~lRA~dy~~K~~~Lk~Lr~KA~~RNpDEFyf~M~~sk~~~~G~h~~~~~~~~~~~ 80 (243)
T PF03998_consen 1 RRNHRERSQPASRKKLGLLEKKKDYKLRAKDYHKKEAKLKRLREKAANRNPDEFYFGMINSKTDDDGVHVEKREENEELS 80 (243)
T ss_pred CCcccccCChHHhhhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHhcccCCCCeeccCccccccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999 99999887 78999
Q ss_pred HHHHHHhhhhcHHHHHHHHHHHHHHHHHHHhhhcccCCCCC--CCeEEEecChHHHHH-------------hhhhcCCCC
Q 027818 88 QEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPS--SRHVYFAEDREEAKE-------------IKSQSGRKD 152 (218)
Q Consensus 88 ~eqvkLlKTQDl~Yv~~kr~~e~kKIekL~~~L~~~~~~~~--nkH~vFvD~~eE~~~-------------~~r~~nr~~ 152 (218)
+|+|+||+|||++||+++++++.+||++|+++||++++..+ |+|||||||++|+++ +++.+|+|+
T Consensus 81 ~e~~~llkTQD~~Yv~~~~~~e~kKIekL~~~l~~~~~~~~~~~kh~vFvD~~~e~~~f~~~~~~~t~~e~~~~~~nr~~ 160 (243)
T PF03998_consen 81 KEQVKLLKTQDLNYVRTKRQIERKKIEKLQSELHLLDGKSSGKNKHIVFVDSEEEAKEFDPAEYFDTDPELLDRRENRPK 160 (243)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCceEEecCchHHHhccHHHhhccchhhhcccccccc
Confidence 99999999999999999999999999999999999985544 599999999999876 467888888
Q ss_pred CCCCCC-CCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCC
Q 027818 153 ALPDFD-DIP-------DHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQVSND 203 (218)
Q Consensus 153 ~~~l~~-~~~-------~~~~~~~~~~ykeL~~r~~R~k~L~~~~~~Lelqk~lm~~~~ 203 (218)
.++|.. .++ ..+.+.+...|++|++|+.|+++|..|+++|++|++||+++.
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~eL~~r~~R~k~L~~~~~~lelqr~lm~kg~ 219 (243)
T PF03998_consen 161 KDQLEEESLPEEEREAKKKLEKKREKLYKELEARLEREKELKKAEQELELQRALMKKGK 219 (243)
T ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888722 222 256788999999999999999999999999999999998763
No 2
>KOG3237 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.4e-67 Score=457.82 Aligned_cols=202 Identities=45% Similarity=0.693 Sum_probs=189.8
Q ss_pred Ccccccccc--cccccccCCcchhhccccccccccHHHHHHHHhHHHHHHHHHHHHHhhhCCCcchhhhhhccccCCccc
Q 027818 1 MSSLRNALP--RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHR 78 (218)
Q Consensus 1 MSSlrnavk--rr~HrER~Qp~~R~~lGlLEKkKDY~~RA~dy~~K~~~lk~Lr~KA~~rNpDEFyf~M~~sk~~~G~h~ 78 (218)
||||+||++ |++|||||||.+|++||+|||||||++||.|||+|+++|+.||++|+++|||||||+|+|+++.||+|+
T Consensus 1 mss~~~a~ks~rk~HRERsQP~~Rrk~G~LEKkKDY~~RA~dy~kKq~tLK~LrekA~eKNpDEfyh~M~~~K~~dG~hi 80 (250)
T KOG3237|consen 1 MSSFVNASKSRRKVHRERSQPEARRKYGFLEKKKDYKKRAQDYHKKQDTLKKLREKALEKNPDEFYHKMHNSKTKDGRHI 80 (250)
T ss_pred CcchhhcchhhhhHHHhhcChhHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhhccccCCccc
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHhhhcccC--CCCCCCeEEEecChHHHHH-------------
Q 027818 79 LEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNPSSRHVYFAEDREEAKE------------- 143 (218)
Q Consensus 79 ~~~~~~~~t~eqvkLlKTQDl~Yv~~kr~~e~kKIekL~~~L~~~~--~~~~nkH~vFvD~~eE~~~------------- 143 (218)
+..+.+++|+|||+||+|||++||.+++++|++|||+|.++||+++ .+.+|+||+||||.+|+++
T Consensus 81 ~k~e~~e~t~eqlklmktQDi~YV~~kr~~ErkKIerlka~L~~~~~~~~~s~kH~~F~d~~~ea~~Fdp~~~f~tt~el 160 (250)
T KOG3237|consen 81 EKDEVDEPTMEQLKLMKTQDIGYVRMKRQRERKKIERLKAQLHCVDRNKGESNKHTKFVDDREEAKSFDPAKFFQTTLEL 160 (250)
T ss_pred cccccccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccccccccccccCceeEEeccHHHHhccChHHHhcccHHH
Confidence 9988889999999999999999999999999999999999999999 6788999999999999976
Q ss_pred hhhhcCCCCCCCCCC-------CCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccC
Q 027818 144 IKSQSGRKDALPDFD-------DIP-DHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQVSN 202 (218)
Q Consensus 144 ~~r~~nr~~~~~l~~-------~~~-~~~~~~~~~~ykeL~~r~~R~k~L~~~~~~Lelqk~lm~~~ 202 (218)
+++.+||+..+++.. ..| ..+.+.+..+|++|..|.+|+++|..|++.|++++.|++++
T Consensus 161 v~R~~nr~~keei~~~~~~~~~~~~~k~~~k~~~k~~~eL~kR~eR~k~L~~v~qkv~l~k~L~~k~ 227 (250)
T KOG3237|consen 161 VGRSENRLKKEEIQKEISKATSPMPKKSLDKKKQKRYNELKKRREREKKLNVVEQKVELQKELQKKK 227 (250)
T ss_pred hhhhhhhhhHHHHHHHHHhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 678999999887711 122 25688899999999999999999999999999999999983
No 3
>COG5223 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.5e-50 Score=342.28 Aligned_cols=202 Identities=32% Similarity=0.364 Sum_probs=183.2
Q ss_pred Ccc-cccccccccccccCCcchhhccccccccccHHHHHHHHhHHHHHHHHHHHHHhhhCCCcchhhhhhccccCCcccc
Q 027818 1 MSS-LRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRL 79 (218)
Q Consensus 1 MSS-lrnavkrr~HrER~Qp~~R~~lGlLEKkKDY~~RA~dy~~K~~~lk~Lr~KA~~rNpDEFyf~M~~sk~~~G~h~~ 79 (218)
||+ |.++-+|++|+||+||.+|++||+|||||||+.||.|||+|+++|+.||++|..||||||||+|++.++.+|+.++
T Consensus 1 Ms~~f~~v~qrK~hrERtQp~~RrkyG~LEK~KDyvkRaqd~~~kq~~lk~lrEka~ernpdEyyh~mhs~Ktd~gv~~~ 80 (240)
T COG5223 1 MSLGFTKVPQRKVHRERTQPKDRRKYGKLEKKKDYVKRAQDINKKQDELKKLREKARERNPDEYYHGMHSVKTDGGVSSI 80 (240)
T ss_pred CCcccccchHhhhHHHhcCcchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHhhhhcccCCccce
Confidence 786 5555589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCeEEEecChHHHHH-------------hhh
Q 027818 80 EGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKE-------------IKS 146 (218)
Q Consensus 80 ~~~~~~~t~eqvkLlKTQDl~Yv~~kr~~e~kKIekL~~~L~~~~~~~~nkH~vFvD~~eE~~~-------------~~r 146 (218)
.+.++.+++|++++++|||.+|+++.+++|+.+++.+..+++|. .++.||||||+..++++ +.+
T Consensus 81 ~ReDe~~~md~~KmlktqD~~~~R~~r~lEr~k~~~~~~qi~f~---es~~htifvD~r~~~kef~peeFf~tt~elV~r 157 (240)
T COG5223 81 YREDEPTIMDLAKMLKTQDNEIQRCRRKLERYKPMPCGTQIKFE---ESSLHTIFVDMRFGQKEFIPEEFFRTTEELVVR 157 (240)
T ss_pred eccccchHHHHHHHHHhhhhHHHHHHHHHHHhCCcchhceeeee---ccccchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999995 56899999999988876 578
Q ss_pred hcCCCCCCCCC-----C-CCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCC
Q 027818 147 QSGRKDALPDF-----D-DIPD-HIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQVSNDLL 205 (218)
Q Consensus 147 ~~nr~~~~~l~-----~-~~~~-~~~~~~~~~ykeL~~r~~R~k~L~~~~~~Lelqk~lm~~~~~~ 205 (218)
+.||...++.+ + ..|. ...+.+.++..+|..|+.|.++|+.|++.+++++.|.++|++.
T Consensus 158 ~enrl~kdqi~nNel~~sv~~~~~~~k~k~k~~~el~~~~krd~kl~~~eer~e~~r~l~~kg~kk 223 (240)
T COG5223 158 RENRLEKDQIENNELEDSVFSGKLHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLLQGKGGKK 223 (240)
T ss_pred HHHHHHHhhhcccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 88888877752 1 1333 3477889999999999999999999999999999999998843
No 4
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=38.82 E-value=42 Score=25.35 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=19.7
Q ss_pred HHhHHHHHHHHHHHHHhhhCCCcc
Q 027818 40 AYHKKEESIRRLKEKAAFRNPDEF 63 (218)
Q Consensus 40 dy~~K~~~lk~Lr~KA~~rNpDEF 63 (218)
|-.--..+|..|+.++....|+||
T Consensus 65 DLd~i~krir~lk~kl~~~yP~~y 88 (88)
T PF10241_consen 65 DLDYIFKRIRSLKAKLAKQYPEEY 88 (88)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcC
Confidence 334446789999999999999998
No 5
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=23.79 E-value=99 Score=27.42 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=26.5
Q ss_pred ccHHHHHHHHhHHHHHHHHHHHHHhhhCCCc
Q 027818 32 KDYVIRAKAYHKKEESIRRLKEKAAFRNPDE 62 (218)
Q Consensus 32 KDY~~RA~dy~~K~~~lk~Lr~KA~~rNpDE 62 (218)
++|+.+..++.+.+..++.|+.|+.-.||+.
T Consensus 119 ~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k 149 (223)
T cd07605 119 KEYKQKREDLDKARSELKKLQKKSQKSGTGK 149 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCc
Confidence 5778888899999999999999999777753
No 6
>PF10258 RNA_GG_bind: PHAX RNA-binding domain; InterPro: IPR019385 The phosphorylated adaptor for RNA export (PHAX) protein transports U3 snoRNA from the nucleus after transcription []. This entry represents the highly conserved U3 snoRNA-binding domain of PHAX, which is characterised by having two pairs of adjacent glycines with the sequence motif GGx12GG.; PDB: 2XC7_A 2W4S_B.
Probab=18.76 E-value=1.4e+02 Score=22.81 Aligned_cols=69 Identities=19% Similarity=0.133 Sum_probs=49.0
Q ss_pred ccccccccHHHHHHHHhHHHHHHHHHHHH-HhhhCCCcchhhhhhccccCCccccc-CCCCCCCHHHHHHh
Q 027818 26 GLLEKHKDYVIRAKAYHKKEESIRRLKEK-AAFRNPDEFYFKMIKTKTVDGVHRLE-GEANKYTQEELMLM 94 (218)
Q Consensus 26 GlLEKkKDY~~RA~dy~~K~~~lk~Lr~K-A~~rNpDEFyf~M~~sk~~~G~h~~~-~~~~~~t~eqvkLl 94 (218)
.|-|++.|.+.|+=..-=.+..+..+.+- +.+.|..-+.-.-...+|.+||-... ...+..|+++.+.+
T Consensus 9 ~L~E~k~~li~rvV~~lG~~~~~~l~~et~~Ie~~GG~~~~dG~RrRTpGGVF~~LlK~~~~i~~e~~k~I 79 (87)
T PF10258_consen 9 RLKEPKKDLIERVVKRLGVEKALELLNETMKIEKNGGMMTADGSRRRTPGGVFFNLLKNDDDISPEDKKEI 79 (87)
T ss_dssp HCT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-EE-TTSSCE-SHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHcCCeEeecCccCcCCCcchhHhhccCccCCHHHHHHH
Confidence 57799999999999999999999988874 45778887777777778888987442 22356788887754
No 7
>COG4549 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=16.82 E-value=47 Score=28.77 Aligned_cols=11 Identities=45% Similarity=0.890 Sum_probs=8.4
Q ss_pred hCCCcchhhhh
Q 027818 58 RNPDEFYFKMI 68 (218)
Q Consensus 58 rNpDEFyf~M~ 68 (218)
.||||||-+-+
T Consensus 108 nlPde~YD~fv 118 (178)
T COG4549 108 NLPDEFYDEFV 118 (178)
T ss_pred CCchhhccceE
Confidence 59999995554
No 8
>PF02202 Tachykinin: Tachykinin family; InterPro: IPR002040 This family includes peptides, which belong to the tachykinin family. Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. Tachykinins, like most other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Tachykinins are from ten to twelve residues long.; GO: 0007217 tachykinin receptor signaling pathway, 0007268 synaptic transmission; PDB: 1MYU_A 1N6T_A 2GFR_A.
Probab=15.87 E-value=19 Score=17.89 Aligned_cols=7 Identities=57% Similarity=1.160 Sum_probs=4.9
Q ss_pred CCCcchh
Q 027818 59 NPDEFYF 65 (218)
Q Consensus 59 NpDEFyf 65 (218)
+||.||=
T Consensus 3 ~pd~F~G 9 (11)
T PF02202_consen 3 KPDQFYG 9 (11)
T ss_dssp CHHHHCC
T ss_pred Cccccee
Confidence 6788873
No 9
>PF05370 DUF749: Domain of unknown function (DUF749); InterPro: IPR008032 This is a family of unknown function found in archaebacterial proteins. The family has been solved via structural genomics techniques and comprises of segregated helical and anti-parallel beta sheet regions. It is a putative metal-binding protein. ; PDB: 1IQS_A 1IQO_A.
Probab=15.49 E-value=19 Score=27.87 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccC-CCCCCCeEEEecChHHHHH
Q 027818 100 GYVLQKLQSERNKIEKLTTMLHSLD-NNPSSRHVYFAEDREEAKE 143 (218)
Q Consensus 100 ~Yv~~kr~~e~kKIekL~~~L~~~~-~~~~nkH~vFvD~~eE~~~ 143 (218)
+||+.+...|.+++..=. .+..+. .+..+-|++|+|+...++.
T Consensus 20 ~fv~~kA~~ekreL~~dd-~vAIlnI~gTtSy~v~FLd~~~~iee 63 (87)
T PF05370_consen 20 DFVKVKAAIEKRELKDDD-EVAILNIQGTTSYQVFFLDSYNSIEE 63 (87)
T ss_dssp -STHHHHCTTT---SS---EEEEEE-TTTT-EEEEE-S---S-HH
T ss_pred hHhhhhhhhccccCCCCC-cEEEEEecCCceEEEEEEcCCCCHHH
Confidence 789999999988663321 233332 3566789999998654443
No 10
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=14.39 E-value=2.1e+02 Score=21.96 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHH---HHHHHHhhhcccCCCCCCCeEEEecC
Q 027818 100 GYVLQKLQSERN---KIEKLTTMLHSLDNNPSSRHVYFAED 137 (218)
Q Consensus 100 ~Yv~~kr~~e~k---KIekL~~~L~~~~~~~~nkH~vFvD~ 137 (218)
-|..+....+.+ ..++|.+.+.-.......+.++||||
T Consensus 68 ~Y~~~~~e~e~~~~~~~~~L~~~~~~~~~~K~~~~~~~v~~ 108 (109)
T PF06881_consen 68 LYEKLKKEREEKLKEATERLRKKIKKLQQEKQSRRQKMVDS 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCceeecC
Confidence 355555555443 35777777666554555556789987
Done!