Query 027818
Match_columns 218
No_of_seqs 120 out of 237
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 02:56:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3twe_A Alpha4H; unknown functi 36.0 44 0.0015 19.4 3.3 19 169-187 4-22 (27)
2 2jws_A GA88; evolution, foldin 31.1 14 0.00048 25.4 0.7 33 42-78 11-44 (56)
3 4g3b_A Alpha4F3D; alpha helix, 18.8 1.4E+02 0.0049 17.0 3.3 19 169-187 4-22 (26)
4 2fs1_A PSD-1; solution structu 14.3 52 0.0018 22.6 0.8 32 42-77 11-43 (56)
5 1gjs_A Immunoglobulin G bindin 10.1 82 0.0028 22.2 0.7 32 42-77 22-54 (65)
6 2l9s_A PHD finger protein 12; 7.9 2.2E+02 0.0074 18.6 2.0 16 48-63 14-29 (45)
7 1q2z_A ATP-dependent DNA helic 7.8 4.2E+02 0.014 19.8 4.1 45 47-92 69-113 (120)
8 2we8_A Xanthine dehydrogenase; 7.2 56 0.0019 29.6 -1.5 20 54-73 290-309 (386)
9 1iqo_A Hypothetical protein MT 6.3 16 0.00056 27.2 -4.6 39 100-139 21-60 (88)
10 4i1l_A Scurfin, forkhead box p 6.0 5.7E+02 0.02 19.0 3.8 49 87-136 44-92 (93)
No 1
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=36.05 E-value=44 Score=19.37 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027818 169 AASYRELEGRKKRVQELEK 187 (218)
Q Consensus 169 ~~~ykeL~~r~~R~k~L~~ 187 (218)
...|+||+.-.+|.++|..
T Consensus 4 delykeledlqerlrklrk 22 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4579999999999988864
No 2
>2jws_A GA88; evolution, folding, protein design, protein structure, de novo protein; NMR {Artificial gene} PDB: 2kdl_A 2lhg_A 2lhc_A 2lhd_A 2lhe_A 2kdm_A 2jwu_A
Probab=31.13 E-value=14 Score=25.44 Aligned_cols=33 Identities=42% Similarity=0.642 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHhhhCCCcchhhhhh-ccccCCccc
Q 027818 42 HKKEESIRRLKEKAAFRNPDEFYFKMIK-TKTVDGVHR 78 (218)
Q Consensus 42 ~~K~~~lk~Lr~KA~~rNpDEFyf~M~~-sk~~~G~h~ 78 (218)
..|...|..|..-+- -||||.-|| +++++||.-
T Consensus 11 ~aK~~ai~el~~agi----~e~~~n~innakTVeGV~a 44 (56)
T 2jws_A 11 QAKEEAIKELVDAGI----AEKYIKLIANAKTVEGVWT 44 (56)
T ss_dssp HHHHHHHHHHHHHTC----CHHHHHHHHTCSCHHHHHH
T ss_pred hhhHhHHHHHHHhhh----HHHHHHHhhcccccccccc
Confidence 457778888877664 389998875 777888753
No 3
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=18.78 E-value=1.4e+02 Score=17.04 Aligned_cols=19 Identities=32% Similarity=0.648 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027818 169 AASYRELEGRKKRVQELEK 187 (218)
Q Consensus 169 ~~~ykeL~~r~~R~k~L~~ 187 (218)
...|+||+...+|.++...
T Consensus 4 de~ykeled~qerlrk~rk 22 (26)
T 4g3b_A 4 DEXYKELEDXQERLRKXRK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3579999999998877543
No 4
>2fs1_A PSD-1; solution structure, protein binding; NMR {Finegoldia magna atcc 29328}
Probab=14.31 E-value=52 Score=22.56 Aligned_cols=32 Identities=41% Similarity=0.756 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHhhhCCCcchhhhhh-ccccCCcc
Q 027818 42 HKKEESIRRLKEKAAFRNPDEFYFKMIK-TKTVDGVH 77 (218)
Q Consensus 42 ~~K~~~lk~Lr~KA~~rNpDEFyf~M~~-sk~~~G~h 77 (218)
..|++.|+.|..--. ..||+.-|| ++|++||.
T Consensus 11 eAKe~Ai~El~~~GI----sd~y~~~In~AkTvEgv~ 43 (56)
T 2fs1_A 11 QAKEAAIKELKQYGI----GDYYIKLINNAKTVEGVE 43 (56)
T ss_dssp HHHHHHHHHHHHHCC----CHHHHHHHHTCSSSHHHH
T ss_pred HHHHHHHHHHHHcCc----hHHHHHHhhhhhhHHHHH
Confidence 346666666654222 678888876 77788865
No 5
>1gjs_A Immunoglobulin G binding protein G; immunoglobulin-binding protein, bacterial surface protein, albumin binding; NMR {Streptococcus SP} SCOP: a.8.1.2 PDB: 1gjt_A
Probab=10.14 E-value=82 Score=22.18 Aligned_cols=32 Identities=31% Similarity=0.525 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHhhhCCCcchhhhhh-ccccCCcc
Q 027818 42 HKKEESIRRLKEKAAFRNPDEFYFKMIK-TKTVDGVH 77 (218)
Q Consensus 42 ~~K~~~lk~Lr~KA~~rNpDEFyf~M~~-sk~~~G~h 77 (218)
..|++.|..|..--. ..||+.-|| ++|.+||.
T Consensus 22 eAKe~Ai~EL~~~GI----sd~y~~~In~AkTvEgV~ 54 (65)
T 1gjs_A 22 EAKVLANRELDKYGV----SDYYKNLINNAKTVEGVK 54 (65)
T ss_dssp HHHHHHHHHHHHHTC----CHHHHHHHHTCCSHHHHH
T ss_pred HHHHHHHHHHHHcCc----cHHHHHhhhccchHHHHH
Confidence 456777777754322 678888876 67777764
No 6
>2l9s_A PHD finger protein 12; protein-peptide complex, amphipathic helix motif, transcript; NMR {Homo sapiens} PDB: 2lkm_A
Probab=7.93 E-value=2.2e+02 Score=18.62 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=12.4
Q ss_pred HHHHHHHHhhhCCCcc
Q 027818 48 IRRLKEKAAFRNPDEF 63 (218)
Q Consensus 48 lk~Lr~KA~~rNpDEF 63 (218)
+..|=+-|...||-+|
T Consensus 14 f~~Li~aA~~~NP~qF 29 (45)
T 2l9s_A 14 FELLIAAAMERNPTQF 29 (45)
T ss_dssp HHHHHHHHHHSSCCCS
T ss_pred HHHHHHHHHHhChhhh
Confidence 3456677899999988
No 7
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=7.84 E-value=4.2e+02 Score=19.77 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhCCCcchhhhhhccccCCcccccCCCCCCCHHHHH
Q 027818 47 SIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELM 92 (218)
Q Consensus 47 ~lk~Lr~KA~~rNpDEFyf~M~~sk~~~G~h~~~~~~~~~t~eqvk 92 (218)
=|..|+.+...++=.+|...++..+. +-+..........|+++-+
T Consensus 69 Fl~~Lk~~~~~~~l~~FW~~iv~~~l-gLI~~~E~~~S~vt~eeA~ 113 (120)
T 1q2z_A 69 FLKALQEKVEIKQLNHFWEIVVQDGI-TLITKEEASGSSVTAEEAK 113 (120)
T ss_dssp HHHHHHHHHHTTSTTHHHHHHHHTTC-CSCCSTTSSSCCCCHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHCCc-CCCcHhhccccCCCHHHHH
Confidence 47788888888888899987654321 2122222223466777653
No 8
>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A
Probab=7.22 E-value=56 Score=29.62 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=15.4
Q ss_pred HHhhhCCCcchhhhhhcccc
Q 027818 54 KAAFRNPDEFYFKMIKTKTV 73 (218)
Q Consensus 54 KA~~rNpDEFyf~M~~sk~~ 73 (218)
.++.+.||=||.||+.|++.
T Consensus 290 ~~aL~~~~~~YIG~iGSrrk 309 (386)
T 2we8_A 290 EVALRLPDIAYIGAMGSRRT 309 (386)
T ss_dssp HHHTTSSCCSEEEECCCHHH
T ss_pred HHHhcCCCCCEEEEecChhH
Confidence 45567787899999998863
No 9
>1iqo_A Hypothetical protein MTH1880; beta-alpha, anti-parallel, calcium binding, structural genomics, metal binding protein; NMR {Methanothermobacter} SCOP: d.214.1.1 PDB: 1iqs_A
Probab=6.26 E-value=16 Score=27.22 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccC-CCCCCCeEEEecChH
Q 027818 100 GYVLQKLQSERNKIEKLTTMLHSLD-NNPSSRHVYFAEDRE 139 (218)
Q Consensus 100 ~Yv~~kr~~e~kKIekL~~~L~~~~-~~~~nkH~vFvD~~e 139 (218)
+||+++...|.+++..= ..+..+. .+..+-|++|+|+..
T Consensus 21 ~fv~~kA~~ekreLkdd-d~vAIlnI~gT~Sy~v~FLd~~~ 60 (88)
T 1iqo_A 21 PFVDYKAGLEKKKLSDD-DEIAIISIKGTQSNHVLFLSSYN 60 (88)
T ss_dssp CSTHHHHTTTTCCCSSC-CCEEEEECTTTTCCEEEECSCCC
T ss_pred hHhhhhhhhhcccCCCC-CcEEEEEecCCceEEEEEEeCCC
Confidence 67888888887755221 1222222 356678999999873
No 10
>4i1l_A Scurfin, forkhead box protein P3; FOXP3, dimerization, complex ensemble, stability, regulatory activity, acetyation, DNA-binding, metal-binding; 2.10A {Mus musculus}
Probab=6.03 E-value=5.7e+02 Score=18.97 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=27.8
Q ss_pred CHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCeEEEec
Q 027818 87 TQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAE 136 (218)
Q Consensus 87 t~eqvkLlKTQDl~Yv~~kr~~e~kKIekL~~~L~~~~~~~~nkH~vFvD 136 (218)
|..|.+ +..|=+..+......|+.++.-++.-|++-.+.+...+++++|
T Consensus 44 S~AQcr-vQ~qvVq~LE~QL~kEreRLqAM~~HL~~K~~~~k~~~~~~~~ 92 (93)
T 4i1l_A 44 GKAQCL-LQREVVQSLEQQLELEKEKLGAMQAHLAGKMALAKAPSVASMD 92 (93)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTSSCC-------------
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCCCcccccC
Confidence 334444 4777888899999999999988888888644444445555543
Done!