Query 027818
Match_columns 218
No_of_seqs 120 out of 237
Neff 4.7
Searched_HMMs 13730
Date Tue Mar 26 02:56:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027818.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027818hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j5ya1 a.8.1.2 (A:1-53) PAB { 35.3 7.4 0.00054 24.7 1.5 33 42-77 9-42 (53)
2 d1gjsa_ a.8.1.2 (A:) IgG bindi 31.0 6.2 0.00045 26.1 0.6 46 28-77 8-54 (65)
3 d1pzra_ a.38.2.1 (A:) Erythron 6.5 79 0.0058 19.8 1.0 31 62-92 4-34 (60)
4 d1wd5a_ c.61.1.1 (A:) Putative 5.8 4.7E+02 0.035 18.6 5.6 41 98-138 87-129 (208)
5 d1smyd_ e.29.1.2 (D:) RNA-poly 5.7 28 0.0021 34.8 -2.5 34 59-107 1065-1098(1504)
6 d1t5ia_ c.37.1.19 (A:) Spliceo 5.3 2.4E+02 0.017 19.8 3.3 32 110-144 12-43 (168)
7 d1zh5a1 a.4.5.46 (A:5-103) Lup 4.6 71 0.0051 21.9 -0.2 11 60-70 16-26 (99)
8 d1a1va2 c.37.1.14 (A:326-624) 4.6 1.6E+02 0.012 24.0 2.0 17 128-144 36-52 (299)
9 d1rw2a_ a.118.19.1 (A:) C-term 4.4 2.6E+02 0.019 20.1 3.0 43 47-92 100-144 (152)
10 d1s7oa_ a.4.13.3 (A:) Hypothet 4.2 5E+02 0.037 17.2 4.4 41 84-124 31-71 (106)
No 1
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=35.29 E-value=7.4 Score=24.70 Aligned_cols=33 Identities=39% Similarity=0.663 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHhhhCCCcchhhhhh-ccccCCcc
Q 027818 42 HKKEESIRRLKEKAAFRNPDEFYFKMIK-TKTVDGVH 77 (218)
Q Consensus 42 ~~K~~~lk~Lr~KA~~rNpDEFyf~M~~-sk~~~G~h 77 (218)
+.|++.|+.|++- ==..+|||..|| .+|+.||.
T Consensus 9 ~AKe~AI~eLK~~---GIts~~y~~~InkaKTVEgV~ 42 (53)
T d2j5ya1 9 NAKEDAIAELKKA---GITSDFYFNAINKAKTVEEVN 42 (53)
T ss_dssp HHHHHHHHHHHHT---TCCCHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHc---CccHHHHHHHHHhhhhHHHHH
Confidence 4677888888753 234689999988 56677764
No 2
>d1gjsa_ a.8.1.2 (A:) IgG binding protein G {Streptococcus sp., group G [TaxId: 1306]}
Probab=30.99 E-value=6.2 Score=26.14 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=33.1
Q ss_pred ccccccHHHHHHHHhHHHHHHHHHHHHHhhhCCCcchhhhhh-ccccCCcc
Q 027818 28 LEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK-TKTVDGVH 77 (218)
Q Consensus 28 LEKkKDY~~RA~dy~~K~~~lk~Lr~KA~~rNpDEFyf~M~~-sk~~~G~h 77 (218)
=++|-|-+.-+.=-+.|+..++.|++--- .+|||..|| .+|+.||.
T Consensus 8 ~~k~ed~v~~~~L~~AKe~Ai~Elk~yGi----sdyy~nlIN~AKTVEGV~ 54 (65)
T d1gjsa_ 8 NAQHDEAVDANSLAEAKVLANRELDKYGV----SDYYKNLINNAKTVEGVK 54 (65)
T ss_dssp CSSCCSSCTHHHHHHHHHHHHHHHHHHTC----CHHHHHHHHTCCSHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHcCc----hHHHHHHHhccchHHHHH
Confidence 34555555555566788899999987654 589999997 67777764
No 3
>d1pzra_ a.38.2.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=6.46 E-value=79 Score=19.83 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=25.1
Q ss_pred cchhhhhhccccCCcccccCCCCCCCHHHHH
Q 027818 62 EFYFKMIKTKTVDGVHRLEGEANKYTQEELM 92 (218)
Q Consensus 62 EFyf~M~~sk~~~G~h~~~~~~~~~t~eqvk 92 (218)
.=.|.|...+..+|....-.+.+.+|.|.++
T Consensus 4 delfsmldqrfgggedllms~~~gmtedkLR 34 (60)
T d1pzra_ 4 DELFSMLDQRFGGGEDLLMSGDNGMTEEKLR 34 (60)
T ss_dssp HHHHHHHHHHHHCCCSSCCCCCCSSHHHHHH
T ss_pred HHHHHHHHHhhcCcchhhccCCCCCCHHHHH
Confidence 3468999999988887777777889999887
No 4
>d1wd5a_ c.61.1.1 (A:) Putative phosphoribosyltransferase TT1426 (TTHA1462) {Thermus thermophilus [TaxId: 274]}
Probab=5.77 E-value=4.7e+02 Score=18.60 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhccc--CCCCCCCeEEEecCh
Q 027818 98 DIGYVLQKLQSERNKIEKLTTMLHSL--DNNPSSRHVYFAEDR 138 (218)
Q Consensus 98 Dl~Yv~~kr~~e~kKIekL~~~L~~~--~~~~~nkH~vFvD~~ 138 (218)
+..|+.........++.+........ ...-.|+++|-|||.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gk~ViLVDD~ 129 (208)
T d1wd5a_ 87 DQSYLEREAARQRDVLRKRAERYRRVRPKAARKGRDVVLVDDG 129 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCTTSEEEEECSC
T ss_pred CchhhhhHHHHHHHHHHhhcceeeccCCCcccCCCEEEEEcch
Confidence 44566666555555555544433211 134578999999975
No 5
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]}
Probab=5.65 E-value=28 Score=34.78 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=23.1
Q ss_pred CCCcchhhhhhccccCCcccccCCCCCCCHHHHHHhhhhcHHHHHHHHH
Q 027818 59 NPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQ 107 (218)
Q Consensus 59 NpDEFyf~M~~sk~~~G~h~~~~~~~~~t~eqvkLlKTQDl~Yv~~kr~ 107 (218)
+|.|||||.+..| .| ..+. -+||-|-||++-++.
T Consensus 1065 tP~EFFFHtMGGR--EG---LIDT----------AVKTA~SGYLqRRLV 1098 (1504)
T d1smyd_ 1065 TVLEYFISSHGAR--KG---GADT----------ALRTADSGYLTRKLV 1098 (1504)
T ss_dssp CHHHHHHHHHHHH--HH---HHHH----------HHHHSCSHHHHHHHH
T ss_pred CHHHHHhhcCCCc--ch---hhhh----------hccccccchhhHHHH
Confidence 6888888887553 22 1111 269999999987775
No 6
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.27 E-value=2.4e+02 Score=19.78 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhcccCCCCCCCeEEEecChHHHHHh
Q 027818 110 RNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEI 144 (218)
Q Consensus 110 ~kKIekL~~~L~~~~~~~~nkH~vFvD~~eE~~~~ 144 (218)
..|++.|..-|... ..++-+||+.+.+.++.+
T Consensus 12 ~~K~~~L~~ll~~~---~~~k~iIF~~~~~~~~~l 43 (168)
T d1t5ia_ 12 NEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIAL 43 (168)
T ss_dssp GGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CCCeEEEEEeeeecchhh
Confidence 35566666555443 356899999999888763
No 7
>d1zh5a1 a.4.5.46 (A:5-103) Lupus La autoantigen N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.65 E-value=71 Score=21.94 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=7.7
Q ss_pred CCcchhhhhhc
Q 027818 60 PDEFYFKMIKT 70 (218)
Q Consensus 60 pDEFyf~M~~s 70 (218)
-=||||+=-|-
T Consensus 16 QvEfYFSd~NL 26 (99)
T d1zh5a1 16 QIEYYFGDFNL 26 (99)
T ss_dssp HHHHHTSTTTG
T ss_pred HHHHhcCHhhh
Confidence 34899986553
No 8
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=4.65 E-value=1.6e+02 Score=24.02 Aligned_cols=17 Identities=24% Similarity=0.657 Sum_probs=14.6
Q ss_pred CCCeEEEecChHHHHHh
Q 027818 128 SSRHVYFAEDREEAKEI 144 (218)
Q Consensus 128 ~nkH~vFvD~~eE~~~~ 144 (218)
.++++||+++..+++.+
T Consensus 36 ggk~LVFcnSR~~aE~L 52 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDEL 52 (299)
T ss_dssp SSEEEEECSSHHHHHHH
T ss_pred CCCEEEECCcHHHHHHH
Confidence 46899999999999874
No 9
>d1rw2a_ a.118.19.1 (A:) C-terminal domain of Ku80 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.43 E-value=2.6e+02 Score=20.15 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhCCCcchhhhhhccccCCcccccC--CCCCCCHHHHH
Q 027818 47 SIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEG--EANKYTQEELM 92 (218)
Q Consensus 47 ~lk~Lr~KA~~rNpDEFyf~M~~sk~~~G~h~~~~--~~~~~t~eqvk 92 (218)
=|..|+.++..+|-.+|....+..+. | .|... .....|.|+.+
T Consensus 100 FL~~LK~~~l~~~l~~FW~~i~~~~l--g-LIs~~E~~~S~Vt~eeA~ 144 (152)
T d1rw2a_ 100 FLKALQEKVEIKQLNHFWEIVVQDGI--T-LITKEEASGSSVTAEEAK 144 (152)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHTC--S-SCSSSSSSSCSCCTHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHcCC--c-cCChhhcccCCCCHHHHH
Confidence 36778888888887788866554433 2 12222 22467877765
No 10
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=4.22 E-value=5e+02 Score=17.21 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=33.7
Q ss_pred CCCCHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHhhhcccC
Q 027818 84 NKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD 124 (218)
Q Consensus 84 ~~~t~eqvkLlKTQDl~Yv~~kr~~e~kKIekL~~~L~~~~ 124 (218)
..+|..+|.-.-.=-.+-|......-.+++....+.||+++
T Consensus 31 ~~ls~~EIA~~lgiS~~aV~~~l~RA~~~L~~~e~kL~l~~ 71 (106)
T d1s7oa_ 31 DDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLHMYS 71 (106)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHChHH
Confidence 45888888876666778888888889999999999999853
Done!