BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027819
(218 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84J78|SSBP_ARATH Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis
thaliana GN=At4g11060 PE=2 SV=1
Length = 201
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 90/146 (61%), Gaps = 13/146 (8%)
Query: 75 NGLDP-------GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENP 127
+G+DP G+ +AI+ G+VGQ+P+QK L++GRTVT+F++GTGG+ + R P
Sbjct: 58 HGVDPRKGWGFRGVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQP 117
Query: 128 TEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREI 187
QWHR++V+ E LG ++ L S++YVEG++E +V+ND I+ V+ I EI
Sbjct: 118 K------PAQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEI 171
Query: 188 AIRRNGRLVFLGKGGDAQPPSPSEVR 213
+RR+G++ + G S E++
Sbjct: 172 CVRRDGKIRMIKYGESISKISFDELK 197
>sp|Q8D254|SSB_WIGBR Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia
brevipalpis GN=ssb PE=3 SV=2
Length = 163
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K IL+G +GQ P + + +G +T SL T ++ E++ TE WH
Sbjct: 5 GINKVILIGNLGQDPEVRYIPNGNAITNLSLATSENWRDKNTGESKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
RV ++ +L V ++L GS +Y+EGNL+ + + D G R I EI + NG + LG
Sbjct: 57 RVILFG-KLAEVAGEYLKKGSQVYIEGNLQTRKWQDQ-NGQDRYITEIVVGINGCMQMLG 114
>sp|Q1RK72|SSB_RICBR Single-stranded DNA-binding protein OS=Rickettsia bellii (strain
RML369-C) GN=ssb PE=3 SV=1
Length = 150
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 14/136 (10%)
Query: 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVS 142
K L+G +G+ P + G+ + SL T I +R E + TE WHRV
Sbjct: 7 KVTLIGNLGRDPEIRTTGEGKEIANLSLATTDIWKDRVTGEKKEKTE--------WHRVV 58
Query: 143 VYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR-NGRLVFLGKG 201
++ E L VV ++ GS +Y+EG+L+ + +ND +G+ + EI ++ N +L+ L
Sbjct: 59 IFNEGLVSVVKNYVKKGSKLYIEGSLQTRKWNDS-SGVEKYTTEIVLQNFNSQLILL--- 114
Query: 202 GDAQPPSPSEVRGAGY 217
D++ + S ++ +G+
Sbjct: 115 -DSKNSTSSSLQDSGH 129
>sp|Q89A53|SSB_BUCBP Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=ssb PE=3 SV=1
Length = 166
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K IL+G +GQ P + +++G VT +L T ++ E + TE WH
Sbjct: 5 GINKVILIGYLGQDPDVRYMQNGSAVTNITLATSETWKDKNNGEIKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
R+ V+ +L + ++L GS +Y+EG+L+ + + D G+ R I EI + G + LG
Sbjct: 57 RI-VFFNKLAEIAGEYLKKGSQVYIEGSLQTRKWKDQ-NGIERYITEIIVSVGGTMQMLG 114
>sp|Q9A894|SSB_CAUCR Single-stranded DNA-binding protein OS=Caulobacter crescentus
(strain ATCC 19089 / CB15) GN=ssb PE=3 SV=1
Length = 167
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 11/126 (8%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
+ K ILVG +G P + L SG V + T +R E + TE WHR
Sbjct: 5 VNKVILVGNLGADPEIRSLGSGDRVANLRIATSETWRDRSSGERKEKTE--------WHR 56
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR-NGRLVFL- 198
V ++ + L V ++L GST+Y+EG L+ + + D TG + EI +++ G L L
Sbjct: 57 VVIFNDNLVKVAEQYLRKGSTVYIEGALQTRKWTDN-TGQEKYSTEIVLQKFRGELTMLG 115
Query: 199 GKGGDA 204
G+GGDA
Sbjct: 116 GRGGDA 121
>sp|Q92G30|SSB_RICCN Single-stranded DNA-binding protein OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=ssb PE=3 SV=1
Length = 152
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 10/117 (8%)
Query: 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVS 142
K IL+G VG+ P + G+ + SL T +R E + TE WHRV
Sbjct: 7 KVILIGNVGRDPEMRTTGEGKKIINLSLATTETWKDRITSERKERTE--------WHRVV 58
Query: 143 VYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR-NGRLVFL 198
++ E L VV +++ GS +Y+EG+L+ + +ND +G + E+ ++ N +L+ L
Sbjct: 59 IFSEGLVSVVERYVTKGSKLYIEGSLQTRKWNDN-SGQEKYTTEVVLQNFNSQLILL 114
>sp|Q4UJW3|SSB_RICFE Single-stranded DNA-binding protein OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=ssb PE=3 SV=1
Length = 152
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 10/117 (8%)
Query: 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVS 142
K IL+G VG+ P + G+ + SL T +R E + TE WHRV
Sbjct: 7 KVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSERKERTE--------WHRVV 58
Query: 143 VYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR-NGRLVFL 198
++ E L VV +++ GS +Y+EG+L+ + +ND +G + E+ ++ N +L+ L
Sbjct: 59 IFSEGLVSVVERYVTKGSKLYIEGSLQTRKWNDN-SGQEKYTTEVVLQNFNSQLILL 114
>sp|P57610|SSB_BUCAI Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=ssb PE=3 SV=1
Length = 171
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K IL+G +GQ P + + +G V +L T ++ EN+ TE WH
Sbjct: 5 GVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
R+ ++ +L + ++L GS +Y+EG+L+ + + D GL R EI + G + LG
Sbjct: 57 RIVLFG-KLAEIAGEYLRKGSQVYIEGSLQTRKWQDQ-NGLERYTTEIIVNIGGTMQMLG 114
>sp|Q68Y11|SSB_RICTY Single-stranded DNA-binding protein OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=ssb PE=3 SV=1
Length = 152
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 15/136 (11%)
Query: 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVS 142
K IL+G VG+ P + G+ + SL T +R E + TE WHRV
Sbjct: 7 KVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSERKERTE--------WHRVV 58
Query: 143 VYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR-NGRLVFLGKG 201
++ E L +V +++ GS +Y+EG+L+ + +ND +G + E+ ++ N +L+ L
Sbjct: 59 IFSEGLVSIVERYVTKGSKLYIEGSLQTRKWNDN-SGQEKYTTEVVLQNFNSQLILLD-- 115
Query: 202 GDAQPPSPSEVRGAGY 217
S + +G+G+
Sbjct: 116 ---NKNSNNHTQGSGH 128
>sp|Q9RHF4|SSB2_SALTI Single-stranded DNA-binding protein 2 OS=Salmonella typhi GN=ssb2
PE=3 SV=1
Length = 178
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG +GQ P + + +G V SL T +++ + + TE WH
Sbjct: 5 GVNKVILVGNLGQDPEVRYMPNGGAVVNLSLATSDTWTDKQTGDKKERTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
RV +Y +L + ++L GS +Y+EG L + + D +G+ + E+ + ++G + LG
Sbjct: 57 RVVLY-GKLAEIASEYLRKGSQVYIEGALRTRKWTDQ-SGVEKYTTEVVVSQSGTMQMLG 114
>sp|Q9ZCC2|SSB_RICPR Single-stranded DNA-binding protein OS=Rickettsia prowazekii
(strain Madrid E) GN=ssb PE=3 SV=1
Length = 152
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 10/129 (7%)
Query: 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVS 142
K IL+G VG+ P + G+ + SL T +R E + TE WHRV
Sbjct: 7 KVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSERKERTE--------WHRVV 58
Query: 143 VYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR-NGRLVFLGKG 201
++ E L +V +++ GS +Y+EG+L+ + +ND +G + E+ ++ N +L+ L
Sbjct: 59 IFSEGLVSIVERYVTKGSKLYIEGSLQTRKWNDN-SGQEKYTTEVVLQNFNSQLILLDHK 117
Query: 202 GDAQPPSPS 210
Q S
Sbjct: 118 NSNQNTQGS 126
>sp|P28046|SSB_PROMI Single-stranded DNA-binding protein OS=Proteus mirabilis GN=ssb
PE=1 SV=2
Length = 174
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 11/130 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K IL+G +GQ P + + SG V +L T +++ E + TE WH
Sbjct: 5 GVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFL- 198
RV ++ +L + ++L GS +Y+EG L+ + + D +G R E+ + G + L
Sbjct: 57 RVVIFG-KLAEIAGEYLRKGSQVYIEGQLQTRKWQDQ-SGQDRYSTEVVVNIGGTMQMLG 114
Query: 199 GKGGDAQPPS 208
G+GG PS
Sbjct: 115 GRGGQDNAPS 124
>sp|Q8K933|SSB_BUCAP Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=ssb PE=3 SV=1
Length = 162
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K IL+G +GQ P + + +G V +L T ++ EN+ TE WH
Sbjct: 5 GVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
R+ ++ +L + ++L GS +Y+EG+L+ + + D GL R E+ + G + LG
Sbjct: 57 RIVLFG-KLAEIAGEYLRKGSQVYIEGSLQTRKWQDQ-NGLERYTTEVIVNIGGTMQMLG 114
>sp|Q889U1|SSB_PSESM Single-stranded DNA-binding protein OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=ssb PE=1 SV=1
Length = 189
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG GQ P + L +G VT SL T +++ + TE WH
Sbjct: 4 GVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTE--------WH 55
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
RVS++ ++ + ++L GS +Y+EG L+ + + G+ R EI + G + LG
Sbjct: 56 RVSMFG-KVAEIAGEYLRKGSQVYIEGKLQTREWEK--DGIKRYTTEIVVDMQGTMQLLG 112
>sp|Q8P778|SSB_XANCP Single-stranded DNA-binding protein OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=ssb PE=3 SV=1
Length = 172
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K ILVG +G P K ++G +T SL T +R +R E N+ +WH
Sbjct: 4 GINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDR---------EGNNQERTEWH 54
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNL 168
RV V+ +LG + ++L GS +YVEG L
Sbjct: 55 RV-VFFGKLGEIAGEYLRKGSQVYVEGEL 82
>sp|P28043|SSB2_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=2
Length = 179
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K ILVG++G+ P + + +G V + T +++ + TE WH
Sbjct: 5 GINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGKMREQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
RV ++ +L V ++L G+ +Y+EG L + + D G+ R + EI ++ G + LG
Sbjct: 57 RVVLFG-KLAEVAGEYLRKGAQVYIEGQLRTRSWED--NGITRYVTEILVKTTGTMQMLG 113
Query: 200 KGGDAQ 205
+ AQ
Sbjct: 114 RAAGAQ 119
>sp|P40947|SSB_PSEAE Single-stranded DNA-binding protein OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=ssb PE=1 SV=3
Length = 165
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG VG P + + +G VT +L T +++ + + TE WH
Sbjct: 4 GVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTE--------WH 55
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
RV V+ RL + ++L GS +YVEG+L + + G R EI + NG + LG
Sbjct: 56 RV-VFFGRLAEIAGEYLRKGSQVYVEGSLRTRKWQGQ-DGQDRYTTEIVVDINGNMQLLG 113
Query: 200 K--GGDAQPPSPSE 211
GD +P E
Sbjct: 114 GRPSGDDSQRAPRE 127
>sp|P28044|SSB7_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=2
Length = 175
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 13/137 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K ILVG++G+ P + + +G V + T +++ E TE WH
Sbjct: 5 GINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEIREQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
RV ++ +L V ++L G+ +Y+EG L + + D G+ R + EI ++ G + LG
Sbjct: 57 RVVLFG-KLAEVAGEYLRKGAQVYIEGQLRTRSWED--NGITRYVTEILVKTTGTMQMLG 113
Query: 200 K--GGDAQPPSPSEVRG 214
+ G QP + G
Sbjct: 114 RAAGTQTQPEEAQQFSG 130
>sp|P25762|SSB_SERMA Single-stranded DNA-binding protein OS=Serratia marcescens GN=ssb
PE=1 SV=2
Length = 176
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 12/127 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG +GQ P + + +G V +L T ++ E + TE WH
Sbjct: 5 GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
RV ++ +L V ++L GS +Y+EG+L+ + + D +G R EI + G + LG
Sbjct: 57 RVVLFG-KLAEVAGEYLRKGSQVYIEGSLQTRKWQDQ-SGQDRYTTEIVVNVGGTMQMLG 114
Query: 200 --KGGDA 204
+GG A
Sbjct: 115 GRQGGGA 121
>sp|Q9KUW2|SSB_VIBCH Single-stranded DNA-binding protein OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=ssb PE=3
SV=1
Length = 177
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K IL+G +GQ P + + SG V ++ T ++ E + TE WH
Sbjct: 5 GVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIR-RNGRLVFL 198
RV++Y +L V ++L GS +Y+EG L+ + + D +G R E+ ++ NG + L
Sbjct: 57 RVTLY-GKLAEVAGEYLRKGSQVYIEGQLQTRKWQDQ-SGQDRYSTEVVVQGYNGIMQML 114
Query: 199 G 199
G
Sbjct: 115 G 115
>sp|P28045|SSBR_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=2
Length = 175
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K ILVG++G P + + +G V + T +++ E TE WH
Sbjct: 5 GINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
RV ++ +L V ++L G+ +Y+EG L + ++D G+ R I EI ++ G + LG
Sbjct: 57 RVVLFG-KLAEVAGEYLRKGAQVYIEGQLRTRSWDD--NGITRYITEILVKTTGTMQMLG 113
>sp|P18022|SSBP_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=3
Length = 175
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K ILVG++G P + + +G V + T +++ E TE WH
Sbjct: 5 GINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
RV ++ +L V ++L G+ +Y+EG L + ++D G+ R I EI ++ G + LG
Sbjct: 57 RVVLFG-KLAEVAGEYLRKGAQVYIEGQLRTRSWDD--NGITRYITEILVKTTGTMQMLG 113
>sp|Q8PIJ2|SSB_XANAC Single-stranded DNA-binding protein OS=Xanthomonas axonopodis pv.
citri (strain 306) GN=ssb PE=3 SV=1
Length = 180
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K ILVG +G P K ++G +T SL T +R +R + N+ +WH
Sbjct: 4 GINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDR---------DGNNQERTEWH 54
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNL 168
RV V+ +LG + ++L GS +YVEG L
Sbjct: 55 RV-VFFGKLGEIAGEYLRKGSQVYVEGEL 82
>sp|Q8KB47|SSB1_CHLTE Single-stranded DNA-binding protein 1 OS=Chlorobium tepidum (strain
ATCC 49652 / DSM 12025 / TLS) GN=ssb1 PE=3 SV=1
Length = 162
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTG-GIRNNRRPLENENPTEYANRCAVQW 138
G+ K +L+G +G P +++ SG++V F+L T G +++ L+ +W
Sbjct: 4 GLNKVMLIGHLGNDPERRETASGQSVVNFTLATSEGFKDSSGNLQER----------TEW 53
Query: 139 HRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFL 198
HR+ + +L + ++L G +Y+EG L+ + ++D TG + EI L
Sbjct: 54 HRIVAWG-KLADICSQYLKKGRQVYIEGRLQTRSWDDNKTGDKKYATEIVCTDMQMLGAK 112
Query: 199 GKGGDAQPPSPSEVR 213
GG S S+ R
Sbjct: 113 DSGGGTSDASYSQNR 127
>sp|Q8A7M7|SSB_BACTN Single-stranded DNA-binding protein OS=Bacteroides thetaiotaomicron
(strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 /
VPI-5482) GN=ssb PE=3 SV=1
Length = 161
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVS 142
K IL+G VGQ P K +G V F L T R N T+ R +WH +
Sbjct: 5 KVILIGNVGQDPRVKYFDTGSAVATFPLAT-----TDRGYTLANGTQIPERT--EWHNI- 56
Query: 143 VYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGG 202
V RL +V K++ G +Y+EG + + ++D +G +R I EI + L G
Sbjct: 57 VASNRLAEIVDKYVHKGDKLYLEGKIRTRSYSDQ-SGAMRYITEIFVDNMEMLSPKGANT 115
Query: 203 DAQPPSPS 210
A P PS
Sbjct: 116 GAGAPQPS 123
>sp|P0C118|SSB_BRUAB Single-stranded DNA-binding protein OS=Brucella abortus biovar 1
(strain 9-941) GN=ssb PE=3 SV=1
Length = 168
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
+ K ILVG +G P ++L SG V + T +R+ E ++ TE WH
Sbjct: 5 VNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTE--------WHS 56
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR 191
V ++ E L V ++L G+ +Y+EG L+ + + D G R +EI +++
Sbjct: 57 VVIFNENLAKVAEQYLKKGAKVYIEGALQTRKWQDQ-NGNDRYSKEIVLQK 106
>sp|Q2YPX7|SSB_BRUA2 Single-stranded DNA-binding protein OS=Brucella abortus (strain
2308) GN=ssb PE=3 SV=1
Length = 168
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
+ K ILVG +G P ++L SG V + T +R+ E ++ TE WH
Sbjct: 5 VNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTE--------WHS 56
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR 191
V ++ E L V ++L G+ +Y+EG L+ + + D G R +EI +++
Sbjct: 57 VVIFNENLAKVAEQYLKKGAKVYIEGALQTRKWQDQ-NGNDRYSKEIVLQK 106
>sp|Q9ZAQ8|SSB_RHOS4 Single-stranded DNA-binding protein OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=ssb
PE=3 SV=2
Length = 173
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
+ K I++G +G+ P + ++G V + T +R E + TE WH
Sbjct: 5 VNKVIIIGNLGRDPEVRSFQNGGKVVNLRIATSEQWRDRASGERKERTE--------WHS 56
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIR 190
V+++ E L V ++L GST+Y+EG LE + + D +G R E+ +R
Sbjct: 57 VAIFDENLARVAEQYLRKGSTVYIEGQLETRKWQDQ-SGQDRYSTEVVLR 105
>sp|Q8L2A6|SSB_PROVU Single-stranded DNA-binding protein OS=Proteus vulgaris GN=ssb PE=3
SV=1
Length = 195
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG VGQ P + + +G V +L T +++ E++ TE WH
Sbjct: 5 GVNKVILVGNVGQDPEVRYMPNGGAVANLTLATSETWRDKQTGESKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
RV ++ +L + + + GS IY+EG L+ + + D G+ + E+ + G + LG
Sbjct: 57 RVVLFG-KLAEITGEFVKKGSQIYIEGALQTRKWTDQ-AGVEKYTTEVVVNVGGTMQMLG 114
>sp|P0AGE3|SSB_SHIFL Single-stranded DNA-binding protein OS=Shigella flexneri GN=ssb
PE=3 SV=2
Length = 178
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 12/127 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG +GQ P + + +G V +L T ++ E + TE WH
Sbjct: 5 GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
RV ++ +L V ++L GS +Y+EG L + + D +G R E+ + G + LG
Sbjct: 57 RVVLFG-KLAEVASEYLRKGSQVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVGGTMQMLG 114
Query: 200 --KGGDA 204
+GG A
Sbjct: 115 GRQGGGA 121
>sp|P0AGE0|SSB_ECOLI Single-stranded DNA-binding protein OS=Escherichia coli (strain
K12) GN=ssb PE=1 SV=2
Length = 178
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 12/127 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG +GQ P + + +G V +L T ++ E + TE WH
Sbjct: 5 GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
RV ++ +L V ++L GS +Y+EG L + + D +G R E+ + G + LG
Sbjct: 57 RVVLFG-KLAEVASEYLRKGSQVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVGGTMQMLG 114
Query: 200 --KGGDA 204
+GG A
Sbjct: 115 GRQGGGA 121
>sp|P0AGE1|SSB_ECOL6 Single-stranded DNA-binding protein OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ssb PE=3 SV=2
Length = 178
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 12/127 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG +GQ P + + +G V +L T ++ E + TE WH
Sbjct: 5 GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
RV ++ +L V ++L GS +Y+EG L + + D +G R E+ + G + LG
Sbjct: 57 RVVLFG-KLAEVASEYLRKGSQVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVGGTMQMLG 114
Query: 200 --KGGDA 204
+GG A
Sbjct: 115 GRQGGGA 121
>sp|P0AGE2|SSB_ECO57 Single-stranded DNA-binding protein OS=Escherichia coli O157:H7
GN=ssb PE=3 SV=2
Length = 178
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 12/127 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG +GQ P + + +G V +L T ++ E + TE WH
Sbjct: 5 GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
RV ++ +L V ++L GS +Y+EG L + + D +G R E+ + G + LG
Sbjct: 57 RVVLFG-KLAEVASEYLRKGSQVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVGGTMQMLG 114
Query: 200 --KGGDA 204
+GG A
Sbjct: 115 GRQGGGA 121
>sp|Q89L50|SSB_BRAJA Single-stranded DNA-binding protein OS=Bradyrhizobium japonicum
(strain USDA 110) GN=ssb PE=3 SV=1
Length = 164
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
+ K ILVG +G+ P ++ + GR + S+ T ++ E + TE WHR
Sbjct: 5 VNKVILVGNLGKDPEIRRTQDGRPIANLSIATSETWRDKNSGERKEKTE--------WHR 56
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFND 175
V ++ E L V ++L G+ +Y+EG L+ + + D
Sbjct: 57 VVIFNEGLCKVAEQYLKKGAKVYIEGALQTRKWTD 91
>sp|Q8VMM4|SSBW_PSEPU Single-stranded DNA-binding protein OS=Pseudomonas putida GN=ssb
PE=3 SV=1
Length = 180
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 18/131 (13%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG GQ P + L +G VT SL T +++ + TE WH
Sbjct: 4 GVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTE--------WH 55
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
RVS++ ++ + ++L GS Y+EG L+ + + G+ R EI + G + LG
Sbjct: 56 RVSLFG-KVAEIAGEYLRKGSQCYIEGKLQTREWEKD--GIKRYTTEIIVDMQGTMQLLG 112
Query: 200 -------KGGD 203
+GGD
Sbjct: 113 GRPQNQQQGGD 123
>sp|Q8G0J1|SSB_BRUSU Single-stranded DNA-binding protein OS=Brucella suis biovar 1
(strain 1330) GN=ssb PE=3 SV=1
Length = 168
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
+ K ILVG +G P ++L SG V + T +R+ E ++ TE WH
Sbjct: 5 VNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTE--------WHS 56
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFND 175
V ++ E L V ++L G+ +Y+EG L+ + + D
Sbjct: 57 VVIFNENLAKVAEQYLKKGAKVYIEGALQTRKWQD 91
>sp|Q8YHC2|SSB_BRUME Single-stranded DNA-binding protein OS=Brucella melitensis biotype
1 (strain 16M / ATCC 23456 / NCTC 10094) GN=ssb PE=3
SV=1
Length = 168
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
+ K ILVG +G P ++L SG V + T +R+ E ++ TE WH
Sbjct: 5 VNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTE--------WHS 56
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFND 175
V ++ E L V ++L G+ +Y+EG L+ + + D
Sbjct: 57 VVIFNENLAKVAEQYLKKGAKVYIEGALQTRKWQD 91
>sp|Q9PDI7|SSB2_XYLFA Single-stranded DNA-binding protein 2 OS=Xylella fastidiosa (strain
9a5c) GN=ssb2 PE=3 SV=1
Length = 164
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K ILVG +G P K + G T+T SL T +R ++ E +WH
Sbjct: 4 GINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKEGNTQER---------TEWH 54
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFN 174
RV + +LG + ++L GS Y+EG++ F
Sbjct: 55 RVKFFG-KLGEIAGEYLRKGSQCYIEGSIRYDKFT 88
>sp|Q88QK5|SSB_PSEPK Single-stranded DNA-binding protein OS=Pseudomonas putida (strain
KT2440) GN=ssb PE=3 SV=1
Length = 181
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG GQ P + L +G VT SL T +++ + TE WH
Sbjct: 4 GVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTE--------WH 55
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFL 198
RVS++ ++ + ++L GS Y+EG L+ + + G+ R EI + NG + L
Sbjct: 56 RVSLFG-KVAEIAGEYLRKGSQCYIEGKLQTREWEKD--GIKRYTTEIIVDINGTMQLL 111
>sp|Q83EP4|SSB_COXBU Single-stranded DNA-binding protein OS=Coxiella burnetii (strain
RSA 493 / Nine Mile phase I) GN=ssb PE=1 SV=1
Length = 158
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K IL+G +GQ P + +G V +L T +++ E + TE WH
Sbjct: 4 GVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTE--------WH 55
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREI 187
R++ + RL +V ++L GS IY+EG+L + + D G+ R EI
Sbjct: 56 RIAFF-NRLAEIVGEYLRKGSKIYIEGSLRTRKWQDK-NGVDRYTTEI 101
>sp|Q9XJG4|SSB_BPP1 Single-stranded DNA-binding protein OS=Enterobacteria phage P1
GN=ssb PE=3 SV=1
Length = 162
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K IL+G +GQ P + + +G V S+ T +++ + + TE WH
Sbjct: 5 GVNKVILIGTLGQDPEIRYIPNGGAVGRLSIATNESWRDKQTGQQKEQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
+V ++ +L + ++L GS +Y+EG L+ + + D G+ R EI + + G + +G
Sbjct: 57 KVVLFG-KLAEIASEYLRKGSQVYIEGKLKTRKWTDD-AGVERYTTEIIVSQGGTMQMIG 114
>sp|P77953|SSB_SHEHA Single-stranded DNA-binding protein OS=Shewanella hanedai GN=ssb
PE=3 SV=1
Length = 226
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG +G+ P + + +G V F++ T +++ E +WH
Sbjct: 5 GVNKVILVGNLGKDPEVRYMPNGNAVANFTVATSESWKDQQGQPQER---------TEWH 55
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREI 187
+ +Y RL + ++L GS IY+EG L+ + D TG R EI
Sbjct: 56 NIVMY-RRLAEIAGEYLKKGSKIYIEGKLQTSKWQDQATGQDRYKTEI 102
>sp|Q87DQ5|SSB_XYLFT Single-stranded DNA-binding protein OS=Xylella fastidiosa (strain
Temecula1 / ATCC 700964) GN=ssb PE=3 SV=1
Length = 164
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K ILVG +G P K + G T+T SL T +R ++ E +WH
Sbjct: 4 GINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKDGNTQER---------TEWH 54
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFN 174
RV + +LG + ++L GS Y+EG++ F
Sbjct: 55 RVKFFG-KLGEIAGEYLRKGSQCYIEGSIRYDKFT 88
>sp|Q8ZJ06|SSB_YERPE Single-stranded DNA-binding protein OS=Yersinia pestis GN=ssb PE=3
SV=1
Length = 182
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG +GQ P + + +G V +L T +++ E + TE WH
Sbjct: 5 GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFL 198
RV ++ +L V ++L GS +Y+EG L+ + + D +G R E+ + G + L
Sbjct: 57 RVVLFG-KLAEVAGEYLRKGSQVYIEGALQTRKWQDQ-SGQERYTTEVVVNVGGTMQML 113
>sp|Q8EA81|SSB_SHEON Single-stranded DNA-binding protein OS=Shewanella oneidensis
(strain MR-1) GN=ssb PE=3 SV=1
Length = 238
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG +GQ P + + +G V ++ T +++ + E +WH
Sbjct: 5 GVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQER---------TEWH 55
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
RV ++ +L + ++L GS +Y+EG L+ + + D +G R E+ I ++G + LG
Sbjct: 56 RVVLF-GKLAEITGEYLRKGSQVYLEGKLQTRKWKDQ-SGQDRYSTEVVIDQSGSMQMLG 113
Query: 200 ---KGGDAQP 206
+GG P
Sbjct: 114 SRNQGGQGAP 123
>sp|Q93GP7|SSB2_SALTY Single-stranded DNA-binding protein 2 OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=ssb2 PE=3 SV=1
Length = 172
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG +GQ P + + +G V +L T R+ E TE WH
Sbjct: 5 GVNKVILVGHIGQDPEVRYMPNGGAVANLTLATSETWRVRQDGEMREHTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
RV V+ +L + ++L G+ +Y+EG L + + D +G + E+ + G + LG
Sbjct: 57 RVVVFG-KLAEIASEYLRKGAQVYIEGQLRTRKWTDQ-SGQDKYTTEVIVNVGGTMQMLG 114
Query: 200 K 200
+
Sbjct: 115 R 115
>sp|Q8UF87|SSB_AGRT5 Single-stranded DNA-binding protein OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=ssb PE=3 SV=2
Length = 173
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVS 142
K IL+G VG P ++ + GR + + T +R E + TE WH V
Sbjct: 7 KVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTE--------WHTVV 58
Query: 143 VYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIR 190
V+ E L VV +++ G+ +Y+EG L+ + + D TG R EI ++
Sbjct: 59 VFNEGLCKVVEQYVKKGAKLYIEGQLQTRKWQDQ-TGNDRYSTEIVLQ 105
>sp|P18310|SSBF_ECOLI Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli (strain K12) GN=ssbF PE=1 SV=3
Length = 179
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K ILVG++G+ P + + +G V + T +++ E TE WH
Sbjct: 5 GINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
RV ++ +L V + L G+ +Y+EG L + + D G+ R + EI ++ G + L
Sbjct: 57 RVVLFG-KLAEVAGECLRKGAQVYIEGQLRTRSWED--NGITRYVTEILVKTTGTMQMLV 113
Query: 200 KGGDAQ 205
+ AQ
Sbjct: 114 RAAGAQ 119
>sp|Q95KK4|SSBP_RABIT Single-stranded DNA-binding protein, mitochondrial OS=Oryctolagus
cuniculus GN=SSBP1 PE=2 SV=1
Length = 148
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAV 136
L+ + + L+G+VGQ PV ++++ VT+FSL T + R +NE
Sbjct: 26 LERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMW---RSGDNETYQMGDVSQKT 82
Query: 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFND 175
WHR+SV+ L V +++ GS IYVEG ++ + D
Sbjct: 83 TWHRISVFRPGLRDVAYQYVKKGSRIYVEGKVDYGEYMD 121
>sp|P56898|SSB_RHIME Single-stranded DNA-binding protein OS=Rhizobium meliloti (strain
1021) GN=ssb PE=3 SV=1
Length = 174
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
+ K IL+G VG P ++ + GR + + T +R E TE WH
Sbjct: 5 VNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTE--------WHT 56
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIR 190
V V+ E L VV +++ G+ +Y+EG L+ + + D TG R E+ ++
Sbjct: 57 VVVFNEGLCKVVEQYVKKGAKLYIEGQLQTRKWQDQ-TGNDRYSTEVVLQ 105
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,447,057
Number of Sequences: 539616
Number of extensions: 4050171
Number of successful extensions: 10145
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 10048
Number of HSP's gapped (non-prelim): 93
length of query: 218
length of database: 191,569,459
effective HSP length: 113
effective length of query: 105
effective length of database: 130,592,851
effective search space: 13712249355
effective search space used: 13712249355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)