Query 027819
Match_columns 218
No_of_seqs 126 out of 1062
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 02:58:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027819.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027819hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulp_A Single-strand binding p 100.0 2.3E-30 7.9E-35 203.8 14.8 118 79-204 4-123 (124)
2 3tqy_A Single-stranded DNA-bin 100.0 5.5E-30 1.9E-34 210.0 16.6 116 77-205 4-119 (158)
3 3vdy_A SSB, single-stranded DN 100.0 7.1E-30 2.4E-34 198.6 15.2 110 80-205 4-113 (116)
4 3ull_A DNA binding protein; DN 100.0 2.9E-30 9.9E-35 205.4 12.5 119 77-204 10-130 (132)
5 3lgj_A Single-stranded DNA-bin 100.0 4.4E-30 1.5E-34 212.8 13.6 122 75-206 17-140 (169)
6 2vw9_A Single-stranded DNA bin 100.0 2.2E-29 7.4E-34 201.1 16.1 112 80-205 1-112 (134)
7 3pgz_A Single-stranded DNA-bin 100.0 1.6E-29 5.5E-34 213.4 15.7 118 80-206 25-143 (193)
8 1z9f_A Single-strand binding p 100.0 7.3E-30 2.5E-34 208.4 13.0 115 75-204 10-125 (153)
9 1qvc_A Single stranded DNA bin 100.0 2.4E-29 8.2E-34 203.3 15.9 116 78-206 2-120 (145)
10 3k7u_C MP18 RNA editing comple 100.0 3.5E-29 1.2E-33 203.6 12.6 118 76-205 1-121 (148)
11 3koj_A Uncharacterized protein 100.0 5.4E-29 1.9E-33 192.8 12.3 97 80-196 10-107 (108)
12 3afp_A Single-stranded DNA-bin 100.0 5.7E-29 1.9E-33 205.8 12.1 117 78-203 1-118 (168)
13 4dam_A Single-stranded DNA-bin 100.0 3.2E-28 1.1E-32 193.4 14.3 106 79-198 13-118 (128)
14 1eqq_A Single stranded DNA bin 100.0 4.4E-29 1.5E-33 208.3 9.4 113 79-204 4-119 (178)
15 3eiv_A Single-stranded DNA-bin 99.9 3.5E-27 1.2E-31 200.0 14.2 108 78-197 1-108 (199)
16 3k81_C MP18 RNA editing comple 99.9 3.4E-27 1.2E-31 194.5 10.4 114 78-203 19-135 (164)
17 1se8_A Single-strand binding p 99.9 2.8E-26 9.4E-31 205.1 14.3 111 80-204 4-115 (301)
18 1v1q_A Primosomal replication 99.9 1.9E-26 6.4E-31 184.7 11.4 109 78-205 16-124 (134)
19 2fxq_A Single-strand binding p 99.9 1E-25 3.6E-30 197.2 14.6 111 77-205 124-234 (264)
20 2fxq_A Single-strand binding p 99.9 1.4E-25 4.7E-30 196.5 12.4 108 80-202 4-111 (264)
21 4dni_A Fusion protein of RNA-e 99.9 4.7E-25 1.6E-29 193.4 15.0 110 78-200 143-256 (257)
22 1se8_A Single-strand binding p 99.9 2.7E-25 9.2E-30 198.7 13.6 112 79-205 127-238 (301)
23 1txy_A Primosomal replication 99.9 1.6E-25 5.3E-30 171.4 10.2 103 80-201 1-103 (104)
24 4gs3_A Single-stranded DNA-bin 99.9 4.6E-25 1.6E-29 170.5 10.4 95 81-199 11-106 (107)
25 3fhw_A Primosomal replication 99.9 5.7E-24 1.9E-28 166.3 12.3 101 81-203 1-101 (115)
26 3k8a_A Putative primosomal rep 99.9 1E-23 3.5E-28 161.8 10.3 98 79-199 5-102 (103)
27 3en2_A Probable primosomal rep 99.8 4.8E-21 1.6E-25 146.6 9.5 85 80-176 1-85 (101)
28 3stb_C RNA-editing complex pro 99.8 1.5E-19 5.3E-24 146.3 13.6 95 80-189 43-137 (148)
29 4dni_A Fusion protein of RNA-e 99.8 2.4E-19 8.1E-24 157.2 10.8 100 79-198 28-127 (257)
30 4dka_C RNA-editing complex pro 97.1 0.0077 2.6E-07 45.7 11.2 95 83-198 5-104 (105)
31 3dm3_A Replication factor A; p 95.2 0.097 3.3E-06 39.2 8.1 70 77-171 11-82 (105)
32 1ynx_A Replication factor-A pr 94.6 0.1 3.5E-06 39.3 7.0 97 76-198 9-109 (114)
33 2k75_A Uncharacterized protein 94.6 0.6 2.1E-05 34.7 11.1 85 76-200 8-95 (106)
34 3e0e_A Replication protein A; 94.5 0.14 4.8E-06 37.6 7.3 82 77-195 8-93 (97)
35 1o7i_A SSB, SSO2364, single st 93.8 0.97 3.3E-05 34.0 11.0 86 77-199 8-97 (119)
36 2k50_A Replication factor A re 93.6 0.3 1E-05 36.3 7.7 84 83-198 18-105 (115)
37 2hql_A Hypothetical protein Mg 92.1 2.8 9.5E-05 31.0 11.7 86 80-186 7-92 (110)
38 1jmc_A Protein (replication pr 89.2 1.2 4.2E-05 37.0 7.7 103 76-201 13-116 (246)
39 3f2b_A DNA-directed DNA polyme 88.8 7.6 0.00026 39.8 14.4 74 79-175 15-89 (1041)
40 4gop_C Putative uncharacterize 84.0 3.3 0.00011 37.8 8.1 100 76-200 8-110 (444)
41 3au7_A TIAS, putative uncharac 81.7 13 0.00043 34.2 11.0 79 79-200 282-361 (402)
42 1wjj_A Hypothetical protein F2 81.5 17 0.00058 28.6 10.4 100 64-200 10-122 (145)
43 2vl6_A SSO MCM N-TER, minichro 76.4 6.3 0.00022 33.4 6.9 56 136-200 210-267 (268)
44 4gop_B Putative uncharacterize 67.0 16 0.00054 27.7 6.6 62 80-170 35-99 (136)
45 1ltl_A DNA replication initiat 63.4 7.8 0.00027 33.2 4.6 55 136-202 197-251 (279)
46 3kdf_D Replication protein A 3 61.8 22 0.00075 26.8 6.5 62 80-170 30-94 (132)
47 4hik_A Protection of telomeres 60.9 6.3 0.00021 31.1 3.2 74 83-165 16-92 (143)
48 2hpi_A DNA polymerase III alph 53.6 17 0.00059 37.8 5.9 64 83-170 1044-1107(1220)
49 2pi2_A Replication protein A 3 49.5 67 0.0023 27.1 8.2 32 138-170 101-134 (270)
50 2hbp_A Cytoskeleton assembly c 47.9 24 0.00083 24.5 4.1 35 166-201 1-35 (68)
51 2kbn_A Conserved protein; nucl 37.2 1.2E+02 0.004 22.0 10.7 84 77-199 11-95 (109)
52 1jmc_A Protein (replication pr 35.6 83 0.0028 25.6 6.4 68 83-173 140-210 (246)
53 3kf6_A Protein STN1; OB fold, 33.2 1.1E+02 0.0037 24.2 6.4 80 80-200 46-128 (159)
54 3kf8_A Protein STN1; OB fold; 32.8 1.4E+02 0.0048 25.0 7.4 94 80-201 84-185 (220)
55 2wkd_A ORF34P2; SSB, single-st 32.8 85 0.0029 23.6 5.3 67 136-216 41-107 (119)
56 3a74_A Lysyl-tRNA synthetase; 32.1 1.2E+02 0.0042 28.0 7.6 79 83-201 58-139 (493)
57 1eov_A ASPRS, aspartyl-tRNA sy 31.7 1.7E+02 0.0058 27.0 8.4 46 152-202 86-131 (487)
58 3ebe_A Protein MCM10 homolog; 29.6 50 0.0017 27.2 4.0 91 83-200 57-147 (200)
59 3bju_A Lysyl-tRNA synthetase; 29.1 1.1E+02 0.0037 28.6 6.7 81 82-201 56-141 (521)
60 4ex5_A Lysine--tRNA ligase; st 27.7 1.1E+02 0.0037 28.8 6.4 38 152-201 132-169 (529)
61 1e1o_A Lysyl-tRNA synthetase, 25.1 1E+02 0.0035 28.7 5.7 37 153-201 112-148 (504)
62 1wyd_A Hypothetical aspartyl-t 24.5 1.2E+02 0.0041 27.5 5.9 82 82-201 17-98 (429)
63 1j3a_A 50S ribosomal protein L 24.3 27 0.00091 27.4 1.3 22 143-165 10-31 (142)
64 1vq8_J 50S ribosomal protein L 23.6 28 0.00095 27.4 1.3 21 144-165 19-39 (145)
65 3nem_A Aspartyl-tRNA synthetas 22.9 1.4E+02 0.0047 27.3 6.0 54 139-202 46-102 (438)
66 2isb_A Fumarase, FUM-1; NP_069 22.3 76 0.0026 26.2 3.7 31 140-171 16-46 (192)
67 3e0e_A Replication protein A; 21.8 1.8E+02 0.006 20.5 5.3 43 155-198 7-54 (97)
No 1
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=99.97 E-value=2.3e-30 Score=203.79 Aligned_cols=118 Identities=30% Similarity=0.534 Sum_probs=100.4
Q ss_pred CCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCC
Q 027819 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (218)
Q Consensus 79 ~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkK 158 (218)
++||+|+|+|||++||++|++++|.++++|+||+++.|++++ .| +|. ..++||+|++||+++|+.+.++|+|
T Consensus 4 ~~~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~---~G---~~~--~~t~~~~v~~wg~~~Ae~~~~~l~K 75 (124)
T 3ulp_A 4 KSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRN---TN---ELK--SKTDWHRIVVYDQNIVDLIDKYLRK 75 (124)
T ss_dssp CCEEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTT---TC---CEE--EEEEEEEEEECCHHHHHHHHHHCCT
T ss_pred ccceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceeccc---CC---cEe--cccEEEEEEEEEchHHHHHHhhcCC
Confidence 479999999999999999999999999999999999998764 24 332 3799999999975699999999999
Q ss_pred CCEEEEEEEeEeeeeeCCC-CCeEEEEEEEEEEe-CCcEEEeeCCCCC
Q 027819 159 GSTIYVEGNLEQKVFNDPI-TGLVRRIREIAIRR-NGRLVFLGKGGDA 204 (218)
Q Consensus 159 G~~V~VeG~L~t~~~~d~~-dG~~r~~~eI~v~~-~g~i~~L~~k~~~ 204 (218)
|++|+|+|+|+++.|+++. +|++++.++|+|+. +++|+||+++++.
T Consensus 76 G~~V~V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k~~~ 123 (124)
T 3ulp_A 76 GRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDKRNF 123 (124)
T ss_dssp TCEEEEEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC-----
T ss_pred CCEEEEEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCcCCC
Confidence 9999999999999999863 79999999999985 7799999988754
No 2
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=99.97 E-value=5.5e-30 Score=210.00 Aligned_cols=116 Identities=28% Similarity=0.540 Sum_probs=101.1
Q ss_pred CCCCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhc
Q 027819 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHL 156 (218)
Q Consensus 77 ~~~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~L 156 (218)
|.++||+|+|+|+|++||++|++++|.+|++|+||+++.|+++. +|+ |. +.++||+|++|| ++|+.+.++|
T Consensus 4 Ma~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~---~Ge---~~--e~t~~i~vv~wg-~~Ae~~~~~l 74 (158)
T 3tqy_A 4 MARGVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQ---TGE---LQ--ERTEWHRIAFFN-RLAEIVGEYL 74 (158)
T ss_dssp CCSCEEEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTT---TCC---EE--EEEEEEEEEEET-HHHHHHHHHC
T ss_pred hhcccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccC---CCC---Ee--eeeEEEEEEEEh-HHHHHHHhhc
Confidence 34489999999999999999999999999999999999998753 243 32 379999999998 8999999999
Q ss_pred CCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCCCCCC
Q 027819 157 VPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGGDAQ 205 (218)
Q Consensus 157 kKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k~~~~ 205 (218)
+||+.|+|+|+|+++.|+++ +|++++.++|+|+ +|+||+.++..+
T Consensus 75 ~KG~~V~VeG~L~~~~~~dk-dG~~r~~~eV~a~---~i~~L~~k~~~~ 119 (158)
T 3tqy_A 75 RKGSKIYIEGSLRTRKWQDK-NGVDRYTTEIIAN---EMHMLDNRGGGN 119 (158)
T ss_dssp CTTCEEEEEEEEEEEEEECS-SSCEEEEEEEEEE---EEEECC------
T ss_pred CCCCEEEEEEEEEeeeEECC-CCCEEEEEEEEEe---EEEEccCCcccC
Confidence 99999999999999999998 9999999999999 999999887654
No 3
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=99.97 E-value=7.1e-30 Score=198.57 Aligned_cols=110 Identities=14% Similarity=0.246 Sum_probs=94.0
Q ss_pred CCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCCC
Q 027819 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (218)
Q Consensus 80 ~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkKG 159 (218)
+||+|+|+|+|++||+++++++|.++++|+||+++.|+++. |+ ..++||+|++|| ++|+.+.++|+||
T Consensus 4 mmN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~----g~-------~~t~~~~v~~wg-~~Ae~~~~~l~KG 71 (116)
T 3vdy_A 4 MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNAS----GE-------IEADYVNCTLWR-KTAENTALYCQKG 71 (116)
T ss_dssp CCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSS----SC-------CCEEEEEEEEEH-HHHHHHHHHCCTT
T ss_pred eEeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCC----Cc-------cccEEEEEEEEC-HHHHHHHHhCCCC
Confidence 69999999999999999999999999999999999887542 32 169999999998 8999999999999
Q ss_pred CEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCCCCCC
Q 027819 160 STIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGGDAQ 205 (218)
Q Consensus 160 ~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k~~~~ 205 (218)
++|+|+|+|+++.|+|+ +|++++.++|+|+ +|+||++++...
T Consensus 72 ~~V~V~G~l~~~~~~d~-dG~~~~~~ev~a~---~i~~l~~~~~~~ 113 (116)
T 3vdy_A 72 SLVGVSGRIQTRSYENE-EGVNVYVTEVLAD---TVRFMDPKPREK 113 (116)
T ss_dssp CEEEEEEEEEEEEEC-----CCEEEEEEEEE---EEEECC------
T ss_pred CEEEEEEEEEeeEEECC-CCCEEEEEEEEEE---EEEEccCCCccc
Confidence 99999999999999998 9999999999999 999999876543
No 4
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=99.97 E-value=2.9e-30 Score=205.37 Aligned_cols=119 Identities=27% Similarity=0.506 Sum_probs=98.6
Q ss_pred CCCCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCC--CCCCCCccccccCceeEEEEEEeCchhHHHHHh
Q 027819 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRP--LENENPTEYANRCAVQWHRVSVYPERLGGVVMK 154 (218)
Q Consensus 77 ~~~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~--g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~ 154 (218)
+.++||+|+|+|||++||++|++++|.++++|+||+++.|+++++ ..+| +|. ..++||+|++||+++|+.+.+
T Consensus 10 m~~~mN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g---~~~--~~t~w~~v~~wg~~~Ae~~~~ 84 (132)
T 3ull_A 10 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLG---DVS--QKTTWHRISVFRPGLRDVAYQ 84 (132)
T ss_dssp CCCCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC------------CCE--EEEEEEEEEECSTTHHHHHHH
T ss_pred hhhcCcEEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCC---cee--cceEEEEEEEEchHHHHHHHh
Confidence 334899999999999999999999999999999999999986421 0123 332 379999999998449999999
Q ss_pred hcCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCCCCC
Q 027819 155 HLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGGDA 204 (218)
Q Consensus 155 ~LkKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k~~~ 204 (218)
+|+||++|+|+|+|+++.|+|+ +|++++.++|+|+ +|+||+.++.+
T Consensus 85 ~l~KG~~V~V~G~L~~~~~~d~-dG~~r~~~ev~a~---~i~~l~~~~k~ 130 (132)
T 3ull_A 85 YVKKGSRIYLEGKIDYGEYMDK-NNVRRQATTIIAD---NIIFLSDQTKE 130 (132)
T ss_dssp HCCTTCEEEEEEEEECCCEESS-SSEECCCEEEEEE---EEECC------
T ss_pred hCCCCCEEEEEEEEEeeEEECC-CCCEEEEEEEEEE---EEEEccCCCcc
Confidence 9999999999999999999998 9999999999999 99999887653
No 5
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=99.97 E-value=4.4e-30 Score=212.84 Aligned_cols=122 Identities=26% Similarity=0.477 Sum_probs=89.0
Q ss_pred CCCCCCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCch-hHHHHH
Q 027819 75 NGLDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPER-LGGVVM 153 (218)
Q Consensus 75 ~~~~~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k-~Ae~v~ 153 (218)
++.+.+||+|+|+|||++||++|++++|.+|++|+||+++.|++++ .| +|. ..++||+|++|| + +|+.+.
T Consensus 17 ~~~~~~mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~---~G---e~~--~~t~~i~vv~wg-~~lAe~~~ 87 (169)
T 3lgj_A 17 QGPGSMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKN---TH---QKV--EKTEWHSVVVFN-PHFAKIAL 87 (169)
T ss_dssp ---CCCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC--------------------CEEEEEEEECC-HHHHHHHH
T ss_pred CCcccceeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccc---CC---ccc--cccEEEEEEEeC-HHHHHHHH
Confidence 6667799999999999999999999999999999999999998753 23 332 379999999998 7 999999
Q ss_pred hhcCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEe-CCcEEEeeCCCCCCC
Q 027819 154 KHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR-NGRLVFLGKGGDAQP 206 (218)
Q Consensus 154 ~~LkKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~-~g~i~~L~~k~~~~~ 206 (218)
++|+||++|+|+|+|+++.|+++ +|++++.++|+|+. ..+|+||+.++..++
T Consensus 88 ~~l~KG~~V~VeGrL~~r~~~dk-dG~~r~~~eIva~~~~~~i~~L~~k~~~~~ 140 (169)
T 3lgj_A 88 QYLHKGSKVYIEGKLQTRKWQDK-NGHDRYTTEIVLPQYKGELHLLDAKKEQSA 140 (169)
T ss_dssp HHCCTTCEEEEEEEEEEECC---------CEEEEEECTTCCEEEEECC------
T ss_pred HhCCCCCEEEEEEEEEEEEEECC-CCCEEEEEEEEEEeccCcEEEccCCCcccc
Confidence 99999999999999999999998 99999999999963 558999998876553
No 6
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=99.96 E-value=2.2e-29 Score=201.13 Aligned_cols=112 Identities=23% Similarity=0.307 Sum_probs=100.4
Q ss_pred CCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCCC
Q 027819 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (218)
Q Consensus 80 ~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkKG 159 (218)
+||+|+|+|+|++||++|++++|.++++|+||+++.|+++. | +|. +.++||+|++|| ++|+.+.++|+||
T Consensus 1 mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~----G---~~~--~~t~~~~v~~wg-~~Ae~~~~~l~KG 70 (134)
T 2vw9_A 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQD----G---TLG--EEVCFIDARLFG-RTAEIANQYLSKG 70 (134)
T ss_dssp CCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSS----S---CEE--EEEEEEEEEEEH-HHHHHHHHHCCTT
T ss_pred CeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCeECCC----C---CCc--cccEEEEEEEEc-HHHHHHHHhCCCC
Confidence 48999999999999999999999999999999999998653 4 332 379999999998 8999999999999
Q ss_pred CEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCCCCCC
Q 027819 160 STIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGGDAQ 205 (218)
Q Consensus 160 ~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k~~~~ 205 (218)
++|+|+|+|+++.|+++ +|++++.++|+|+ +|+||+.+...+
T Consensus 71 ~~V~V~G~L~~~~~~dk-dG~~r~~~ev~a~---~i~~l~~~~~~~ 112 (134)
T 2vw9_A 71 SSVLIEGRLTYESWMDQ-TGKKNSRHTITAD---SLQFMDKKSDNP 112 (134)
T ss_dssp CEEEEEEEEEEEEEECT-TSCEEEEEEEEEE---EEEECCCC----
T ss_pred CEEEEEEEEEeeeEECC-CCCEEEEEEEEEE---EEEEccCCcccc
Confidence 99999999999999998 9999999999999 999999876654
No 7
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=99.96 E-value=1.6e-29 Score=213.40 Aligned_cols=118 Identities=31% Similarity=0.529 Sum_probs=99.2
Q ss_pred CCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCCC
Q 027819 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (218)
Q Consensus 80 ~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkKG 159 (218)
.||+|+|+|||++||++|++++|++|++|+||+++.|++++ +| +|. +.++||+|++|++++|+.+.++|+||
T Consensus 25 ~mNkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~---~G---e~~--e~Tdwi~Vvawgk~lAe~~~~yL~KG 96 (193)
T 3pgz_A 25 SLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRN---TN---ERK--ERTEWHNIVIFNENLVKVVEQYLKKG 96 (193)
T ss_dssp CEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----------E--EEEEEEEEEECCHHHHHHHHHHCCTT
T ss_pred hcCEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccC---CC---cee--eeeEEEEEEEECHHHHHHHHhhcCCC
Confidence 79999999999999999999999999999999999998763 24 332 37999999999833999999999999
Q ss_pred CEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEe-CCcEEEeeCCCCCCC
Q 027819 160 STIYVEGNLEQKVFNDPITGLVRRIREIAIRR-NGRLVFLGKGGDAQP 206 (218)
Q Consensus 160 ~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~-~g~i~~L~~k~~~~~ 206 (218)
++|+|+|+|+++.|+++ +|++++.++|+|+. +++|+||+++...+.
T Consensus 97 s~V~VeGrL~trswedk-dG~kr~~tEVva~~~~~~i~fL~sk~~~~~ 143 (193)
T 3pgz_A 97 SKIYIEGQLQTRKWQDQ-NGNDRYTTEIVLQKYRGELQMLDGRAAAGG 143 (193)
T ss_dssp CEEEEEEEEEEEEEECT-TSCEEEEEEEEECTTCCEEEECC-------
T ss_pred CEEEEEEEEEEEEeECC-CCCEEEEEEEEEEeccCceEECcCCCCCCC
Confidence 99999999999999998 99999999999995 567999998876554
No 8
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=99.96 E-value=7.3e-30 Score=208.41 Aligned_cols=115 Identities=23% Similarity=0.360 Sum_probs=87.0
Q ss_pred CCCCCCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCc-eecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHH
Q 027819 75 NGLDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGG-IRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVM 153 (218)
Q Consensus 75 ~~~~~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~-~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~ 153 (218)
.+-|+.||+|+|+||||+||++|++++|.+|++|+||+++ .|+++. |+ | ..++||+|++|| ++|+.+.
T Consensus 10 ~~~~~~~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~----Ge---~---~~t~~~~v~~wg-~~Ae~~~ 78 (153)
T 1z9f_A 10 HHHMSFFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAP----DD---A---QTTDFFRIVTFG-RLAEFAR 78 (153)
T ss_dssp --CCSCCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC---------------------CEEEEEEEEEH-HHHHHHH
T ss_pred cccccceeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCC----CC---E---eeeEEEEEEEEC-HHHHHHH
Confidence 5678999999999999999999999999999999999999 887642 32 2 139999999998 8999999
Q ss_pred hhcCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCCCCC
Q 027819 154 KHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGGDA 204 (218)
Q Consensus 154 ~~LkKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k~~~ 204 (218)
++|+||++|+|+|+|+++.|+++ +|++++.++|+|+ +|+||+.++..
T Consensus 79 ~~l~KG~~V~VeGrL~~~~~~dk-dG~~r~~~eV~a~---~i~~l~~~~~~ 125 (153)
T 1z9f_A 79 TYLTKGRLVLVEGEMRMRRWETP-TGEKRVSPEVVAN---VVRFMDRKPAE 125 (153)
T ss_dssp HHCCTTCEEEEEEEEEEEC--------CCCEEEEEEE---EEEECC-----
T ss_pred hhCCCCCEEEEEEEEEeceEECC-CCCEEEEEEEEEE---EEEEccCCCcc
Confidence 99999999999999999999998 9999999999999 99999887654
No 9
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=99.96 E-value=2.4e-29 Score=203.30 Aligned_cols=116 Identities=28% Similarity=0.489 Sum_probs=104.1
Q ss_pred CCCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcC
Q 027819 78 DPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLV 157 (218)
Q Consensus 78 ~~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~Lk 157 (218)
+++||+|+|+|||++||++|++++|.+|++|+||+++.|+++. .|+ |. +.++||+|++|+ ++|+.+.++|+
T Consensus 2 ~~~mN~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~---~Ge---~~--~~t~~~~v~~wg-~~Ae~~~~~l~ 72 (145)
T 1qvc_A 2 SRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKA---TGE---MK--EQTEWHRVVLFG-KLAEVASEYLR 72 (145)
T ss_dssp CCCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCS---SSS---CC--CCCEEEEEEEET-HHHHHHHHHCC
T ss_pred CCceEEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCccccc---CCc---Ee--cccEEEEEEEeh-HHHHHHHHhcC
Confidence 4579999999999999999999999999999999999988653 233 32 379999999998 89999999999
Q ss_pred CCCEEEEEEEeEeeeeeCCCCCeEEEEEEE---EEEeCCcEEEeeCCCCCCC
Q 027819 158 PGSTIYVEGNLEQKVFNDPITGLVRRIREI---AIRRNGRLVFLGKGGDAQP 206 (218)
Q Consensus 158 KG~~V~VeG~L~t~~~~d~~dG~~r~~~eI---~v~~~g~i~~L~~k~~~~~ 206 (218)
||++|+|+|+|+++.|+|+ +|++++.++| +++ +|+||..+...+.
T Consensus 73 KG~~V~V~G~L~~~~~~d~-dG~~r~~~ei~a~va~---~i~~l~~~~~~~~ 120 (145)
T 1qvc_A 73 KGSQVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVGG---TMQMLGGRQGGGA 120 (145)
T ss_dssp TTCEEEEEEEEEEEEECSS-SSCEEEEEEEECTTCE---EEECCCCSCCCSS
T ss_pred CCCEEEEEEEEEeeEEECC-CCcEEEEEEEeeeEeC---EEEEccCCCcCcc
Confidence 9999999999999999998 9999999999 888 9999998765443
No 10
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=99.96 E-value=3.5e-29 Score=203.58 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=89.7
Q ss_pred CCCCCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchh-HHHHHh
Q 027819 76 GLDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERL-GGVVMK 154 (218)
Q Consensus 76 ~~~~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~-Ae~v~~ 154 (218)
+||.+||+|+|+|||++||+ |++ +|.+|++|+||++++|+++. |+ +| ...++||+|++|+ ++ |+++.+
T Consensus 1 ~M~~~~NkV~LiGrLg~DPe-r~t-~G~~va~FslAv~~~~~~~~----Ge--~~--~~~t~w~~vv~wg-k~lAe~~~~ 69 (148)
T 3k7u_C 1 GMSKSVNSVTLVGVVHDIQS-GFV-YEDAVTQFTLTTTSIDTTHP----TQ--EV--VVEKDHHTIRCFG-ELFSAEVKQ 69 (148)
T ss_dssp ----CCCCEEEEEEEEEEEE-EES-SSSEEEEEEEEEECC-------------------CEEEEEEEEES-HHHHHHHHH
T ss_pred CCcccCcEEEEEEEeccCCE-eee-CCcEEEEEEEEECCceecCC----CC--EE--ccccEEEEEEEEC-cHHHHHHHh
Confidence 47889999999999999999 999 99999999999999987653 32 12 1379999999999 76 999999
Q ss_pred hcCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEe--CCcEEEeeCCCCCC
Q 027819 155 HLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR--NGRLVFLGKGGDAQ 205 (218)
Q Consensus 155 ~LkKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~--~g~i~~L~~k~~~~ 205 (218)
||+||++|+|+|+|+++.|+|+ +|++++.++|++-. .|.+++|..+....
T Consensus 70 yl~KG~~V~VeGrL~~r~~~dk-dG~kr~~teVi~v~~~~g~~~ll~~~r~~~ 121 (148)
T 3k7u_C 70 KVKEGNVVCVNGRLRLSPQLEP-SCNKHFYFPYIQVQPPHGQVAVIHGDRRTV 121 (148)
T ss_dssp HCCTTCEEEEEEEEEECCCSCC-C-----CCEEEEECTTTCEEEEEECCC---
T ss_pred hCCCCCEEEEEEEEEeeeeECC-CCCEEEEEEEEEEecCCCeEEEccCCCCCC
Confidence 9999999999999999999998 99999999998652 67899998775433
No 11
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=99.96 E-value=5.4e-29 Score=192.76 Aligned_cols=97 Identities=14% Similarity=0.159 Sum_probs=80.4
Q ss_pred CCceEEEEEEeCcCCeEEEcCCC-cEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCC
Q 027819 80 GIFKAILVGQVGQSPVQKKLKSG-RTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (218)
Q Consensus 80 ~~N~v~LiGrIg~dPelr~~~nG-~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkK 158 (218)
-||.|+|+|||++|||+|++++| .++++|+||++ .|++. ..++||+|++|| ++|+.+.+||+|
T Consensus 10 ~~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~-~~~~~--------------~~t~fi~vv~wg-k~AE~~~~yl~K 73 (108)
T 3koj_A 10 HMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFP-GLSSK--------------DAPARLKVVGWG-AVAQELQDRCRL 73 (108)
T ss_dssp SCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEEC-C-------------------CCEEEEEEEET-HHHHHHHHHCCT
T ss_pred ccceEEEEEEECCCCEEEEeCCCCEEEEEEEEEEC-CcccC--------------CCcEEEEEEEEh-HHHHHHHHhCCC
Confidence 58999999999999999999998 99999999999 56532 169999999999 999999999999
Q ss_pred CCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEE
Q 027819 159 GSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLV 196 (218)
Q Consensus 159 G~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~ 196 (218)
|++|+|+|+|+++.|+++ +|++++.+||+|+ +|.
T Consensus 74 G~~V~VeGrL~~r~y~~k-dG~kr~~tEVva~---~i~ 107 (108)
T 3koj_A 74 NDEVVLEGRLRINSLLKP-DGNREKQTELTVT---RVH 107 (108)
T ss_dssp TCEEEEEEEEEEEC---------CCEEEEEEE---EEE
T ss_pred CCEEEEEEEEEeeeEECC-CCCEEEEEEEEEE---EEE
Confidence 999999999999999998 9999999999999 664
No 12
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=99.96 E-value=5.7e-29 Score=205.82 Aligned_cols=117 Identities=20% Similarity=0.322 Sum_probs=95.8
Q ss_pred CCCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcC
Q 027819 78 DPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLV 157 (218)
Q Consensus 78 ~~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~Lk 157 (218)
|.+||+|+|+|||++||++|++++|.+|++|+||++++|++++ .| +|.+ ..++||+|++|+ ++|+.+.++|+
T Consensus 1 Ma~~N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~---~G---e~~d-~~t~~~~v~~wg-~~Ae~~~~~l~ 72 (168)
T 3afp_A 1 MAGDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQ---SG---EWKD-GEALFLRCNIWR-EAAENVAESLT 72 (168)
T ss_dssp --CCCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------------CCCC-CCCEEEEEEEEH-HHHHHHHHHCC
T ss_pred CCccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcccccccc---CC---cEec-CCcEEEEEEEeh-HHHHHHHHhCC
Confidence 5689999999999999999999999999999999998887653 23 3432 269999999998 89999999999
Q ss_pred CCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEe-CCcEEEeeCCCC
Q 027819 158 PGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR-NGRLVFLGKGGD 203 (218)
Q Consensus 158 KG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~-~g~i~~L~~k~~ 203 (218)
||++|+|+|+|+++.|+++ +|++++.++|+|+. ..+|+||..+..
T Consensus 73 KG~~V~VeGrL~~~~~~dk-dG~~r~~~ev~a~~v~~~l~~l~~~~~ 118 (168)
T 3afp_A 73 RGARVIVTGRLKQRSFETR-EGEKRTVVEVEVDEIGPSLRYATAKVN 118 (168)
T ss_dssp TTCEEEEEEEEEEEEEC-C-CSCCEEEEEEEEEEEEECCSSEEEEEE
T ss_pred CCCEEEEEEEEEeeeEECC-CCcEEEEEEEEEEEeecCEEEeccccc
Confidence 9999999999999999998 99999999998884 557888876543
No 13
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=99.96 E-value=3.2e-28 Score=193.39 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=95.5
Q ss_pred CCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCC
Q 027819 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (218)
Q Consensus 79 ~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkK 158 (218)
..+|+|+|+||||+||++|++++| ++++|+||+++.|++++ +| +|.| ..++||+|++|| ++|+.+.++|+|
T Consensus 13 ~~~N~V~LiGrL~~dPelr~t~~G-~v~~fslAv~~~~~d~~---~G---e~~d-~~t~w~~v~~wg-~~Ae~~~~~l~K 83 (128)
T 4dam_A 13 MNEIMICAVGNVATTPVFRDLANG-PSVRFRLAVTARYWDRE---KN---AWTD-GHTNFFTVWANR-QLATNASGSLAV 83 (128)
T ss_dssp BCCCEEEEEEEECSCCEEEEETTE-EEEEEEEEEEEEEEETT---TT---EEEE-EEEEEEEEEEEH-HHHHHHHHHCCT
T ss_pred cceeEEEEEEEECCCCEEEEcCCC-CEEEEEEEEcCceeccc---CC---ceec-CCcEEEEEEEEc-HHHHHHHHhcCC
Confidence 379999999999999999999999 99999999999998763 23 4533 279999999998 899999999999
Q ss_pred CCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEe
Q 027819 159 GSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFL 198 (218)
Q Consensus 159 G~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L 198 (218)
|++|+|+|+|+++.| ++ +|++++.++|+|+ +|..-
T Consensus 84 G~~V~VeGrL~~~~~-dk-dG~~r~~~ev~a~---~vg~d 118 (128)
T 4dam_A 84 GDPVVVQGRLKVRTD-VR-EGQSRTSADIDAV---AIGHD 118 (128)
T ss_dssp TCEEEEEEEEEEEEE-EE-TTEEEEEEEEEEE---EEEEC
T ss_pred CCEEEEEEEEEEeEE-cC-CCCEEEEEEEEEE---EEEec
Confidence 999999999999999 88 9999999999999 77653
No 14
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=99.96 E-value=4.4e-29 Score=208.32 Aligned_cols=113 Identities=28% Similarity=0.502 Sum_probs=100.1
Q ss_pred CCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCC
Q 027819 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (218)
Q Consensus 79 ~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkK 158 (218)
++||+|+|+|||++||++|++++|.+|++|+||+++.|+++.+ |+ |. +.++||+|++|+ ++|+.+.++|+|
T Consensus 4 ~~~N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~---Ge---~~--~~t~~i~vv~wg-~~Ae~~~~~l~K 74 (178)
T 1eqq_A 4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKAT---GE---MK--EQTEWHRVVLFG-KLAEVASEYLRK 74 (178)
T ss_dssp CCEEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSS---SS---CC--CEEEEEEEEECH-HHHHHHHHHCCT
T ss_pred cCeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCC---Cc---ee--cccEEEEEEEcc-HHHHHHHHhcCC
Confidence 4799999999999999999999999999999999999887542 33 32 379999999998 899999999999
Q ss_pred CCEEEEEEEeEeeeeeCCCCCeEEEEEEE---EEEeCCcEEEeeCCCCC
Q 027819 159 GSTIYVEGNLEQKVFNDPITGLVRRIREI---AIRRNGRLVFLGKGGDA 204 (218)
Q Consensus 159 G~~V~VeG~L~t~~~~d~~dG~~r~~~eI---~v~~~g~i~~L~~k~~~ 204 (218)
|+.|+|+|+|+++.|+++ +|++++.++| +++ +|+||..+...
T Consensus 75 G~~V~VeGrL~~r~~~dk-dG~~r~~~eI~v~va~---~i~~l~~~~~~ 119 (178)
T 1eqq_A 75 GSQVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVGG---TMQMLGGRQGG 119 (178)
T ss_dssp TCEEEECCEEEEEEEECS-SSEEEEEEEEECSSSC---CEECSCC----
T ss_pred CCEEEEEEEEEeeeEECC-CCCEEEEEEEeeeecC---eEEEccccCCC
Confidence 999999999999999998 9999999999 777 99999887653
No 15
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=99.95 E-value=3.5e-27 Score=199.99 Aligned_cols=108 Identities=21% Similarity=0.334 Sum_probs=81.8
Q ss_pred CCCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcC
Q 027819 78 DPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLV 157 (218)
Q Consensus 78 ~~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~Lk 157 (218)
|+.+|+|+|+|||++|||+|++++|++|++|+||+++++.+++ .+ +|.| ..++||+|++|+ ++|+.+.++|+
T Consensus 1 Ma~~N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~---~G---e~~d-~~T~wi~Vvawg-klAE~v~~~L~ 72 (199)
T 3eiv_A 1 MAGETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQ---TN---EWKD-GESLFLTCSVWR-QAAENVAESLQ 72 (199)
T ss_dssp ---CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------------C-CCCEEEEEEEET-HHHHHHHHHCC
T ss_pred CCcccEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccC---CC---cEec-CccEEEEEEEEh-HHHHHHHHhcC
Confidence 6789999999999999999999999999999999996655443 23 3433 279999999998 89999999999
Q ss_pred CCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEE
Q 027819 158 PGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVF 197 (218)
Q Consensus 158 KG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~ 197 (218)
||++|+|+|+|+++.|+|+ +|++++.++|+|+ +|..
T Consensus 73 KG~~V~VeGrL~~rswedk-dG~kr~~~eVvA~---~Ig~ 108 (199)
T 3eiv_A 73 RGMRVIVQGRLKQRSYEDR-EGVKRTVYELDVD---EVGA 108 (199)
T ss_dssp TTCEEEEEEEEEEEC---------CCEEEEEEE---EEEE
T ss_pred CCCEEEEEEEEEeeEEECC-CCCEEEEEEEEEE---EEec
Confidence 9999999999999999998 9999999999999 7765
No 16
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=99.94 E-value=3.4e-27 Score=194.52 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=90.1
Q ss_pred CCCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchh-HHHHHhhc
Q 027819 78 DPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERL-GGVVMKHL 156 (218)
Q Consensus 78 ~~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~-Ae~v~~~L 156 (218)
..+||+|+|+||||+|||+|+++ .+|++|+||++++|.+++ +|+ | ...++||+|++|| ++ |+.+.+||
T Consensus 19 a~smNkViLiGrLg~DPElR~t~--~~Va~fsLAt~~r~~~~~---~ge---~--~~~Tdw~~Vv~wg-k~lAE~~~~yL 87 (164)
T 3k81_C 19 CKSVNSVTLVGVVHDIQSGFVYE--DAVTQFTLTTTSIDTTHP---TQE---V--VVEKDHHTIRCFG-ELFSAEVKQKV 87 (164)
T ss_dssp -CCEEEEEEEEEEECCCCEESSS--CEECCEEEEECCC--------------C--CCCCEEEEEEECC-HHHHHHHHHHC
T ss_pred hcCCcEEEEEEEeccCCEEEEcC--ccEEEEEEEEcCceeeCC---CCc---C--ccceEEEEEEEEC-CHHHHHHHhhc
Confidence 45799999999999999999998 899999999998776553 232 2 2379999999999 78 99999999
Q ss_pred CCCCEEEEEEEeEeeeeeCCCCCeEEE-EEEEEEEe-CCcEEEeeCCCC
Q 027819 157 VPGSTIYVEGNLEQKVFNDPITGLVRR-IREIAIRR-NGRLVFLGKGGD 203 (218)
Q Consensus 157 kKG~~V~VeG~L~t~~~~d~~dG~~r~-~~eI~v~~-~g~i~~L~~k~~ 203 (218)
+||++|+|+|+|+++.|+|+ +|++++ ...|+|.. .|.+++|+.+..
T Consensus 88 ~KGs~V~VeGrL~tr~w~D~-~g~k~~~~~~i~V~~~~g~l~~L~~~r~ 135 (164)
T 3k81_C 88 KEGNVVCVNGRLRLSPQLEP-SCNKHFYFPYIQVQPPHGQVAVIHGDRR 135 (164)
T ss_dssp CTTCEEEECCEEEEECCCCS-SCSCCCCEEEEEECTTTCCEEEECC---
T ss_pred CCCCEEEEEEEEEeeeEEcC-CCCEEEEEEEEEEeCCCCEEEEecCCCC
Confidence 99999999999999999998 886554 45555654 689999987644
No 17
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.94 E-value=2.8e-26 Score=205.12 Aligned_cols=111 Identities=22% Similarity=0.288 Sum_probs=93.7
Q ss_pred CCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhh-cCC
Q 027819 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKH-LVP 158 (218)
Q Consensus 80 ~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~-LkK 158 (218)
+||+|+|+|+|++||++|++++|.+|++|+||+++.|+++. |+ | ++.++||+|++|| ++|+.+.++ |+|
T Consensus 4 ~mN~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~----G~---~--~~~t~~i~vv~~g-~~Ae~~~~~~l~K 73 (301)
T 1se8_A 4 GMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGND----GR---E--RNLPWYHRVSILG-KPAEWQAERNLKG 73 (301)
T ss_dssp CEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC----------------CEEEEEEEEEEES-HHHHHHHHTCCCT
T ss_pred ceeEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCC----CC---E--ecceEEEEEEEEc-HHHHHHHhhCCCC
Confidence 79999999999999999999999999999999999988652 43 2 2379999999998 899999999 999
Q ss_pred CCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCCCCC
Q 027819 159 GSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGGDA 204 (218)
Q Consensus 159 G~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k~~~ 204 (218)
|++|+|+|+|+++.|+++ +|++++.++|+|+ +|+||+.++..
T Consensus 74 G~~V~VeG~L~~r~~~dk-dG~~r~~~ev~a~---~i~~l~~~~~~ 115 (301)
T 1se8_A 74 GDAVVVEGTLEYRQWEAP-EGGKRSAVNVKAL---RMEQLGTQPEL 115 (301)
T ss_dssp TCEEEEEEEEEEEEEC------CEEEEEEEEE---EEEECSSCCCE
T ss_pred CCEEEEEEEEEeeeEECC-CCCEEEEEEEEEe---EEEEeeccccc
Confidence 999999999999999998 9999999999999 99999887643
No 18
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=99.94 E-value=1.9e-26 Score=184.68 Aligned_cols=109 Identities=18% Similarity=0.160 Sum_probs=91.9
Q ss_pred CCCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcC
Q 027819 78 DPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLV 157 (218)
Q Consensus 78 ~~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~Lk 157 (218)
|.++|+|+|+|||++|||+|++++|.+|++|+||++ +|+++ +|++ ++.++||+|++|| ++|+.+.+||+
T Consensus 16 m~M~NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~-~~~~~----~G~~-----~~~~~~i~vv~wG-k~AE~~~~yl~ 84 (134)
T 1v1q_A 16 SLMTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHR-SVQEE----AGFH-----RQAWCQMPVIVSG-HENQAITHSIT 84 (134)
T ss_dssp GGCCEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEE-EEEEE----TTEE-----EEEEEEEEEEEES-TGGGGGGTTCC
T ss_pred CcceeEEEEEEEECcCCceEECCCCCEEEEEEEEEe-CcCcC----CCCE-----ecceEEEEEEEEh-HHHHHHHHhcC
Confidence 335699999999999999999999999999999996 45533 2321 2367899999999 89999999999
Q ss_pred CCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCCCCCC
Q 027819 158 PGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGGDAQ 205 (218)
Q Consensus 158 KG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k~~~~ 205 (218)
||++|+|+|+|+++. ++ +|++++.+ +|+ +|+||+++++..
T Consensus 85 KGs~V~VeGrL~tr~--~k-~G~kr~~~--~a~---~i~~l~~k~~~~ 124 (134)
T 1v1q_A 85 VGSRITVQGFISCHK--AK-NGLSKMVL--HAE---QIELIDSVDKLA 124 (134)
T ss_dssp TTCEEEEEEEEEEEC--TT-TTSCEEEE--EEE---EEEETTSCSCCC
T ss_pred CCCEEEEEEEEEEEE--CC-CCCEEEEE--EEE---EEEECcCCCCcc
Confidence 999999999999983 66 89988765 899 999998776443
No 19
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.93 E-value=1e-25 Score=197.24 Aligned_cols=111 Identities=19% Similarity=0.256 Sum_probs=94.9
Q ss_pred CCCCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhc
Q 027819 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHL 156 (218)
Q Consensus 77 ~~~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~L 156 (218)
++.+||+|+|+|||++||++|++++|.++++|+||++++|+ | +| ...++||+|++|| ++|+.+. +|
T Consensus 124 m~~~~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~-------g---~~--~~~t~~~~v~~wg-~~Ae~~~-~l 189 (264)
T 2fxq_A 124 LRRALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRR-------G---QE--EERTHFLEVQAWR-ELAEWAS-EL 189 (264)
T ss_dssp -CCCCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------------------EEEEEEEEEH-HHHHHHT-TC
T ss_pred cccceEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcC-------C---CC--ccccEEEEEEEEC-hHHHHhh-hc
Confidence 44589999999999999999999999999999999999876 1 12 1369999999998 8999999 99
Q ss_pred CCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCCCCCC
Q 027819 157 VPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGGDAQ 205 (218)
Q Consensus 157 kKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k~~~~ 205 (218)
+||++|+|+|+|+++.|+++ +|++++.++|+|+ +|+||+.++..+
T Consensus 190 ~KG~~V~V~G~l~~~~~~~~-dG~~~~~~ev~a~---~i~~l~~~~~~~ 234 (264)
T 2fxq_A 190 RKGDGLLVIGRLVNDSWTSS-SGERRFQTRVEAL---RLERPTRGPAQA 234 (264)
T ss_dssp CTTCEEEEEEEEEEEEEECT-TSCEEEEEEEEEE---EEECCCC-----
T ss_pred CCCCEEEEEEEEEeeEEECC-CCCEEEEEEEEEE---EEEECccccccc
Confidence 99999999999999999998 9999999999999 999998876654
No 20
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.93 E-value=1.4e-25 Score=196.51 Aligned_cols=108 Identities=20% Similarity=0.276 Sum_probs=90.8
Q ss_pred CCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCCC
Q 027819 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (218)
Q Consensus 80 ~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkKG 159 (218)
+||+|+|+|+|++||++|++++|.++++|+||+++.|+++. |+ | +..++||+|++|| ++|+.+.++|+||
T Consensus 4 ~~N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~----G~---~--~~~t~~~~v~~~g-~~Ae~~~~~l~KG 73 (264)
T 2fxq_A 4 GLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDES----GQ---E--REVPWYHRVRLLG-RQAEMWGDLLEKG 73 (264)
T ss_dssp CEEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTT----SC---E--EEEEEEEEEEEET-HHHHHHTTTCCTT
T ss_pred ceeEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCC----CC---E--ecccEEEEEEEEc-hHHHHHHHhCCCC
Confidence 79999999999999999999999999999999999998653 43 2 2369999999998 8999999999999
Q ss_pred CEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCCC
Q 027819 160 STIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGG 202 (218)
Q Consensus 160 ~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k~ 202 (218)
++|+|+|+|+++.|++ +|++++.++|+|+ +|+||+.+.
T Consensus 74 ~~V~V~G~L~~~~~~~--dG~~r~~~ev~a~---~i~~l~~~~ 111 (264)
T 2fxq_A 74 QLIFVEGRLEYRQWEK--DGEKKSEVQVRAE---FIDPLEGRG 111 (264)
T ss_dssp CEEEEEEEEEEC-----------CCEEEEEE---EEEECCCC-
T ss_pred CEEEEEEEEEeeeEEe--CCEEEEEEEEEEE---EEEECcCCc
Confidence 9999999999999987 8999999999999 999998876
No 21
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.93 E-value=4.7e-25 Score=193.40 Aligned_cols=110 Identities=18% Similarity=0.233 Sum_probs=96.1
Q ss_pred CCCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchh--HHHHHhh
Q 027819 78 DPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERL--GGVVMKH 155 (218)
Q Consensus 78 ~~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~--Ae~v~~~ 155 (218)
|+++|+|+|+||| +|||+|+++ |.+|++|+||+++.|++++. + ++ ...++||+|++|| ++ |+ ++++
T Consensus 143 M~~lNkV~LiGrL-~DPElR~t~-G~~Va~FslAv~~~~~~~~~---~---e~--~~~Tdw~~Vv~wg-k~~~AE-i~~~ 210 (257)
T 4dni_A 143 MKSVNSVTLVGVV-HDIQSGFVY-EDAVTQFTLTTTSIDTTHPT---Q---EV--VVEKDHHTIRCFG-ELFSAE-VKQK 210 (257)
T ss_dssp TSCEEEEEEEEEE-EEEEEEEET-TEEEEEEEEEEEEEECCCTT---C---SC--EEEEEEEEEEEES-HHHHHH-HHHH
T ss_pred ccccCEEEEEEEc-CCCEEEEeC-CcEEEEEEEEECCCccCCCC---c---eE--ccceEEEEEEEEC-CccHHH-HHhh
Confidence 7799999999999 999999999 99999999999999987531 1 11 2379999999998 89 99 8889
Q ss_pred cCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEE-EEe-CCcEEEeeC
Q 027819 156 LVPGSTIYVEGNLEQKVFNDPITGLVRRIREIA-IRR-NGRLVFLGK 200 (218)
Q Consensus 156 LkKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~-v~~-~g~i~~L~~ 200 (218)
|+||++|+|+|+|+++.|+|+ +|++++.++++ |.. .|.+.+|..
T Consensus 211 L~KG~~V~VeGrL~tr~~~D~-~G~kr~~~~vI~V~~~~g~v~~l~~ 256 (257)
T 4dni_A 211 VKEGNVVCVNGRLRLSPQLEP-SCNKHFYFPYIQVQPPHGQVAVIHG 256 (257)
T ss_dssp CCTTCEEEEEEEEEEEEEECS-SSSCEEEEEEEEECTTTCEEEECCC
T ss_pred CCCCCEEEEEEEEEeeeEEcC-CCCEEEEEEEEEEECCCCEEEEecC
Confidence 999999999999999999999 99988888755 553 889999863
No 22
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.92 E-value=2.7e-25 Score=198.73 Aligned_cols=112 Identities=17% Similarity=0.307 Sum_probs=93.3
Q ss_pred CCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCC
Q 027819 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (218)
Q Consensus 79 ~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkK 158 (218)
.+||+|+|+|+|++||++|++++|.+|++|+||+++.|+++. | +|. ..++||+|++|| ++|+.+.+ |+|
T Consensus 127 ~mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~----G---e~~--~~t~~i~vvawg-~~Ae~~~~-l~K 195 (301)
T 1se8_A 127 GAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQ----G---QRQ--EKVHYIDATLWR-DLAENMKE-LRK 195 (301)
T ss_dssp TCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTT----S---CEE--EEEEEEEEEEET-HHHHHHTT-CCT
T ss_pred cceeEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCC----C---Ccc--cccEEEEEEECC-HHHHHHHh-cCC
Confidence 368999999999999999999999999999999999998653 4 332 369999999998 89999999 999
Q ss_pred CCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCCCCCC
Q 027819 159 GSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGGDAQ 205 (218)
Q Consensus 159 G~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k~~~~ 205 (218)
|+.|+|+|+|+++.|+++ +|++++.++|+|+ +|+||..+....
T Consensus 196 G~~V~V~GrL~~~~y~dk-dG~~r~~~ev~a~---~i~~l~~k~~~~ 238 (301)
T 1se8_A 196 GDPVMIMGRLVNEGWTDK-DGNKRNSTRVEAT---RVEALARGAGNA 238 (301)
T ss_dssp TCEEEEEEEEEEEECC-------CEEEEEEEE---EEEECCC-----
T ss_pred CCEEEEEEEEeeeeEECC-CCcEEEEEEEEEE---EEEEeccCCCCC
Confidence 999999999999999998 9999999999999 999998876543
No 23
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=99.92 E-value=1.6e-25 Score=171.44 Aligned_cols=103 Identities=20% Similarity=0.246 Sum_probs=78.9
Q ss_pred CCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCCC
Q 027819 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (218)
Q Consensus 80 ~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkKG 159 (218)
+||+|+|+|||++||++|++++|.++++|+||++ .+... . +|. +....||+|++|| ++|+.+.+||+||
T Consensus 1 M~N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~-~~~~~-----~---~~~-r~~~~~~~vv~~g-~~Ae~~~~~l~KG 69 (104)
T 1txy_A 1 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHR-SVQEE-----A---GFH-RQAWCQMPVIVSG-HENQAITHSITVG 69 (104)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEE-EEEEE-----T---TEE-EEEEEEEEEEEES-STTHHHHTTCCTT
T ss_pred CcEEEEEEEEECCCceEEECCCCCEEEEEEEEEe-Ccccc-----C---Cce-eceeEEEEEEEEh-HHHHHHHhhCCCC
Confidence 4799999999999999999999999999999995 22211 0 121 1245559999999 8999999999999
Q ss_pred CEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCC
Q 027819 160 STIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKG 201 (218)
Q Consensus 160 ~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k 201 (218)
++|+|+|+|+++ +++ +|+++ ++|+|+ +|+||+++
T Consensus 70 ~~V~V~G~L~~~--~~~-~G~~r--~~v~~~---~i~~l~~~ 103 (104)
T 1txy_A 70 SRITVQGFISCH--KAK-NGLSK--MVLHAE---QIELIDSG 103 (104)
T ss_dssp CEEEEEEEEEC-----------C--CEEEEE---EEEEC---
T ss_pred CEEEEEEEEEec--cCC-CCCEE--EEEEEE---EEEECcCC
Confidence 999999999999 677 89887 899999 99999765
No 24
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=99.92 E-value=4.6e-25 Score=170.47 Aligned_cols=95 Identities=18% Similarity=0.146 Sum_probs=79.8
Q ss_pred CceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCCCC
Q 027819 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGS 160 (218)
Q Consensus 81 ~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkKG~ 160 (218)
.|+|+|+|||++|||++++++|..+++|+||++|.+ ..++|++|++|+ ++|+.+. +.||+
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~-----------------~~~Dfi~ivvw~-klAe~~~--~~kG~ 70 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLS-----------------ETKDYLPITISN-RLFEGMN--LEVGT 70 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTT-----------------SCEEEEEEEEEG-GGSTTCC--CCTTC
T ss_pred CCEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCC-----------------CCCcEEEEEEEh-HHhhHHh--hcCCC
Confidence 399999999999999999999999999999998742 158999999997 9999876 55999
Q ss_pred EEEEEEEeEe-eeeeCCCCCeEEEEEEEEEEeCCcEEEee
Q 027819 161 TIYVEGNLEQ-KVFNDPITGLVRRIREIAIRRNGRLVFLG 199 (218)
Q Consensus 161 ~V~VeG~L~t-~~~~d~~dG~~r~~~eI~v~~~g~i~~L~ 199 (218)
+|+|+|+|++ +.|+++ +|++|+.++|+|+ +|+||+
T Consensus 71 ~v~v~G~lrsy~~~~~~-dG~~R~v~eV~a~---~i~fld 106 (107)
T 4gs3_A 71 RVKIEGQLRSYNRKSPE-EGKNKLILTVFAR---DISVVP 106 (107)
T ss_dssp EEEEEEEEEEEECC---------EEEEEEEE---EEEEEC
T ss_pred EEEEEEEEEecceEECC-CCCEEEEEEEEEE---EEEEcc
Confidence 9999999997 789888 9999999999999 999996
No 25
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=99.91 E-value=5.7e-24 Score=166.26 Aligned_cols=101 Identities=11% Similarity=0.023 Sum_probs=85.9
Q ss_pred CceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCCCC
Q 027819 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGS 160 (218)
Q Consensus 81 ~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkKG~ 160 (218)
||+|+|+|+|++|||+|++++|.+|++|+||+++.+. . .|.+ ++...|++|++|| ++|+.+ ++|+||+
T Consensus 1 MNkviL~GrL~~dPelRyTpsG~~V~~f~LA~~~~~~-~----~g~~-----r~~~~~i~vv~~G-k~AE~~-~~l~kGs 68 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTPAGLPALELLLVHESEVV-E----AGHP-----RRVELTISAVALG-DLALLL-ADTPLGT 68 (115)
T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEECC-C----CC-------CEEEEEEEEEEET-HHHHHH-TTCCTTC
T ss_pred CCEEEEEEEECcCcceEECCCCCEEEEEEEEEcceee-c----CCCe-----eeeeEEEEEEEEh-HHHHhh-hccCCCC
Confidence 7999999999999999999999999999999975432 2 1221 2366779999999 999998 9999999
Q ss_pred EEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCCCC
Q 027819 161 TIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGGD 203 (218)
Q Consensus 161 ~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k~~ 203 (218)
+|+|+|+|+++. + +| +.++|.|+ +|+||+.+..
T Consensus 69 ~V~VeGrL~trs---~-~G---~kl~l~a~---~Ie~l~~~~~ 101 (115)
T 3fhw_A 69 EMQVQGFLAPAR---K-DS---VKVKLHLQ---QARRIAGSMG 101 (115)
T ss_dssp EEEEEEEEEESS---T-TC---SSEEEEEE---EEEECCCSCC
T ss_pred EEEEEEEEEECC---C-CC---CEEEEEEE---EEEEcCCCCC
Confidence 999999999984 5 78 57899999 9999977644
No 26
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=99.90 E-value=1e-23 Score=161.77 Aligned_cols=98 Identities=15% Similarity=0.036 Sum_probs=81.4
Q ss_pred CCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCC
Q 027819 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (218)
Q Consensus 79 ~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkK 158 (218)
.++|+|+|+|+|++|||+|++++|.+|++|+||+++.+++ +|++ ++.+.||+|++|| ++|+ +.+ |+|
T Consensus 5 ~m~Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~-----~g~~-----~~~~~~i~vv~~g-k~Ae-~~~-l~K 71 (103)
T 3k8a_A 5 GFTNLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEE-----NGQQ-----CLVQLEIPARILG-RQAE-EWQ-YRQ 71 (103)
T ss_dssp CCCEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEE-----TTEE-----EEEEEEEEEEEEH-HHHH-HST-TCT
T ss_pred ccccEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCcc-----CCCE-----EEeeEEEEEEEEh-HHhh-hhc-cCC
Confidence 3449999999999999999999999999999999887652 2322 2245569999998 8999 665 999
Q ss_pred CCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEee
Q 027819 159 GSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199 (218)
Q Consensus 159 G~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~ 199 (218)
|++|+|+|+|+++.|.. . .+.+.+. +|++++
T Consensus 72 G~~v~veGrL~~rs~~~----~---~lvlhi~---~i~~i~ 102 (103)
T 3k8a_A 72 GDCATVEGFLAQKSRRS----L---MPMLRIQ---NIKEYK 102 (103)
T ss_dssp TCEEEEEEEEEESSSSC----C---CEEEEEE---EEEECC
T ss_pred CCEEEEEEEEEECccCC----c---cEEEEEE---EEEEcC
Confidence 99999999999999943 2 5678888 888873
No 27
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=99.84 E-value=4.8e-21 Score=146.56 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=70.1
Q ss_pred CCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCCC
Q 027819 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (218)
Q Consensus 80 ~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkKG 159 (218)
.||+|+|+|+|++|||+|++++|.+|++|+||+++.+.+. |.+ ++...|++|++|| ++|+.+.+ ++||
T Consensus 1 ~MN~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e~-----g~~-----r~~~f~i~vv~wG-k~AE~~~~-~~kG 68 (101)
T 3en2_A 1 AINRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAMEA-----QAA-----RQVEFSIEALGAG-KMASVLDR-IAPG 68 (101)
T ss_dssp CCCCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEECC-------E-----EEEEEEEEEEEET-HHHHHHTT-SCTT
T ss_pred CcCEEEEEEEECcCccEEECCCCCEEEEEEEEEcceEecC-----CCc-----EeeeEEEEEEEEh-HHHHHHhh-cCCC
Confidence 3799999999999999999999999999999998766532 221 2356669999999 99999997 7899
Q ss_pred CEEEEEEEeEeeeeeCC
Q 027819 160 STIYVEGNLEQKVFNDP 176 (218)
Q Consensus 160 ~~V~VeG~L~t~~~~d~ 176 (218)
+.|.|+|+|+++.|..+
T Consensus 69 s~V~VeGrL~trs~~s~ 85 (101)
T 3en2_A 69 TVLECVGFLARKHRSSK 85 (101)
T ss_dssp CEEEEEEEEEECC----
T ss_pred CEEEEEEEEEeCcCCCC
Confidence 99999999999999875
No 28
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=99.82 E-value=1.5e-19 Score=146.32 Aligned_cols=95 Identities=17% Similarity=0.104 Sum_probs=83.1
Q ss_pred CCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCCC
Q 027819 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (218)
Q Consensus 80 ~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkKG 159 (218)
.+|+|+|+|+|+ ||+.+++. +.+++.|+||+++.+... ++ ..++||+|.|||+++|+.+.++|+||
T Consensus 43 ~vN~VvLmGRvt-dpq~ry~~-~~~Va~FtLAV~~~~~r~-----ge-------~~tdf~~V~vfGg~lAE~i~~ylkkG 108 (148)
T 3stb_C 43 CVNHCVMLGVVQ-NIQEGFVF-EDKVLQFTLITDFEGPSP-----GD-------PDKDFHTVRVFDSDYSSRVKEQLRDG 108 (148)
T ss_dssp CSEEEEEEEEEE-EEEEEEET-TEEEEEEEEEEECSSCCT-----TS-------CSEEEEEEEECSHHHHHHHHHHCCTT
T ss_pred ecceEEEEEEec-CccccccC-CCcEEEEEEEEecCCCCC-----CC-------CccceEEEEEECChHHHHHHHHhcCC
Confidence 679999999996 89999984 789999999999876421 22 27999999999768999999999999
Q ss_pred CEEEEEEEeEeeeeeCCCCCeEEEEEEEEE
Q 027819 160 STIYVEGNLEQKVFNDPITGLVRRIREIAI 189 (218)
Q Consensus 160 ~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v 189 (218)
++|+|+|+|+++.|+|+ +|++.|..-++-
T Consensus 109 ~rVlVeGRLrmn~~~d~-~gkk~Y~~p~i~ 137 (148)
T 3stb_C 109 EWFLVTGRLRMVPQYDG-SMRKYYHYPVIQ 137 (148)
T ss_dssp CEEEEEEEEEEEEEEET-TTTEEEEEEEEE
T ss_pred CEEEEEEEEEcceeECC-CCCEEeeccEEE
Confidence 99999999999999999 999998777653
No 29
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.79 E-value=2.4e-19 Score=157.19 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=84.1
Q ss_pred CCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCC
Q 027819 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (218)
Q Consensus 79 ~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkK 158 (218)
++||+|+|+|+|++| |+|++++|. ++.|++++.+.+. + +|+ ..++|+.|++||+++||.+.+||+|
T Consensus 28 r~~N~viLiGrLtrd-ElRyT~~g~-~a~~~lav~~~~~-~----~ge-------~~~df~~vv~wg~k~AE~~~~yl~k 93 (257)
T 4dni_A 28 RCVNHCVMLGVVQNI-QEGFVFEDK-VLQFTLITDFEGP-S----PGD-------PDKDFHTVRVFDSDYSSRVKEQLRD 93 (257)
T ss_dssp CCSEEEEEEEEEEEE-EEEEETTEE-EEEEEEEEECCCC-C----SSC-------CCEEEEEEEECSHHHHHHHHHHCCT
T ss_pred hcCcEEEEEEEEece-EEEECCCCC-EEEEEEEEEecCC-C----CCC-------CcccEEEEEEECCHHHHHHHHhccC
Confidence 389999999999999 999999884 6777777776543 1 232 2567778889986899999999999
Q ss_pred CCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEe
Q 027819 159 GSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFL 198 (218)
Q Consensus 159 G~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L 198 (218)
|++|+|+|+|++ |+++ ||++++.+||+++ ++..+
T Consensus 94 G~~V~VeGrL~~--~~~~-dG~kr~~~evva~---~v~~~ 127 (257)
T 4dni_A 94 GEWFLVTGRLRM--VPQY-DGSMRKYYHYPVI---QVHPG 127 (257)
T ss_dssp TCEEEEEEEEEE--EEEE-CSSSSSEEEEEEE---EECTT
T ss_pred CCEEEEEEEEEE--eECC-CCCcEEEEEEEEE---EEEec
Confidence 999999999999 8887 9999999999999 55543
No 30
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=97.12 E-value=0.0077 Score=45.69 Aligned_cols=95 Identities=18% Similarity=0.214 Sum_probs=59.5
Q ss_pred eEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhH--HHHHhhcCCCC
Q 027819 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLG--GVVMKHLVPGS 160 (218)
Q Consensus 83 ~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~A--e~v~~~LkKG~ 160 (218)
+++|+|++-. .+.-+. ....|..|+|.+... +. ...++|.|-|+|+ .+ +.+.+.|+.|+
T Consensus 5 n~vlvG~V~D-VQ~Gfl-~~~~V~Qftl~~d~e---------~~-------~eke~~tVRC~Gd-~~~~~~lk~~lk~g~ 65 (105)
T 4dka_C 5 NALMIGRIAD-VQHGFL-GAMTVTQYVLEVDGG---------AS-------GEKEFIVIRCMGD-NFPASLLKDQVKLGS 65 (105)
T ss_dssp EEEEEEEEEE-EEEEEE-TTEEEEEEEEEECC--------------------CCEEEEEEEECC----------CCCTTC
T ss_pred ceEEEEEEEE-eeeccc-ccceEEEEEEEEeCC---------CC-------CcccEEEEEEcCc-cchHHHHHHHHhCCC
Confidence 5788998854 333332 236799999999432 11 2578999999995 54 78999999999
Q ss_pred EEEEEEEeEeeeeeCCCCCeEE--EEEEEEEEe-CCcEEEe
Q 027819 161 TIYVEGNLEQKVFNDPITGLVR--RIREIAIRR-NGRLVFL 198 (218)
Q Consensus 161 ~V~VeG~L~t~~~~d~~dG~~r--~~~eI~v~~-~g~i~~L 198 (218)
.|+|.|+|++..--|. +.++ ...-|.|.. -|.+..+
T Consensus 66 ~v~V~GrLRm~p~~d~--~~kkyy~yP~IqV~pp~G~v~Vi 104 (105)
T 4dka_C 66 RVLVQGTLRMNRHVDD--VSKRLHAYPFIQVVPPLGYVKVV 104 (105)
T ss_dssp EEEEEEEEECCCEECT--TTCSEECCCEEEEC--CCEEEEC
T ss_pred EEEEEeEEEeeecccc--ccceeccCCEEEEECCCcEEEec
Confidence 9999999999966663 3444 444555553 5555443
No 31
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=95.18 E-value=0.097 Score=39.21 Aligned_cols=70 Identities=23% Similarity=0.313 Sum_probs=51.0
Q ss_pred CCCCCceEEEEEEeCcCCeEEEc--CCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHh
Q 027819 77 LDPGIFKAILVGQVGQSPVQKKL--KSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMK 154 (218)
Q Consensus 77 ~~~~~N~v~LiGrIg~dPelr~~--~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~ 154 (218)
|.++ +.+.++|+|-.--+.+.+ .+|.....+++.+.. .|--++|++|+ ..|..
T Consensus 11 L~~~-~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D--------------------~TG~IrvtlW~-~~a~~--- 65 (105)
T 3dm3_A 11 LSPG-MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRD--------------------ETGSIRVTLWD-NLTDI--- 65 (105)
T ss_dssp CCSS-EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEE--------------------TTEEEEEEEEG-GGGGS---
T ss_pred CCCC-CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC--------------------CCCcEEEEEEC-ccccc---
Confidence 3345 789999999988777765 367665556665532 12238999998 67775
Q ss_pred hcCCCCEEEEEEEeEee
Q 027819 155 HLVPGSTIYVEGNLEQK 171 (218)
Q Consensus 155 ~LkKG~~V~VeG~L~t~ 171 (218)
.|++|+.|.|.|+.+..
T Consensus 66 ~l~~Gdvv~i~g~vk~~ 82 (105)
T 3dm3_A 66 DVGRGDYVRVRGYIREG 82 (105)
T ss_dssp CCCTTCEEEEEEEEEEC
T ss_pred ccCCCCEEEEEEEEEEc
Confidence 69999999998877665
No 32
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.65 E-value=0.1 Score=39.33 Aligned_cols=97 Identities=15% Similarity=0.139 Sum_probs=64.7
Q ss_pred CCCCCCceEEEEEEeCcCCeEEEcCCC-cEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHh
Q 027819 76 GLDPGIFKAILVGQVGQSPVQKKLKSG-RTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMK 154 (218)
Q Consensus 76 ~~~~~~N~v~LiGrIg~dPelr~~~nG-~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~ 154 (218)
.|.|+++.+.|.|+|..--++|.+.+. ..--.|+|..- |. .. -+++++|+ .+|+.+..
T Consensus 9 ~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~----De---------------~G-~I~at~~~-~~~~~f~~ 67 (114)
T 1ynx_A 9 QLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFL----DT---------------SG-EIRATAFN-DFATKFNE 67 (114)
T ss_dssp GCCTTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEE----ET---------------TE-EEEEEECH-HHHHHHHH
T ss_pred HCCCCCCceEEEEEEEEeccceEEecCCCCceEEEEEEE----CC---------------CC-eEEEEECH-HHHHHHHh
Confidence 567888999999999998888877542 12223444331 11 23 68999998 89999999
Q ss_pred hcCCCCEEEEEEE-eEee--eeeCCCCCeEEEEEEEEEEeCCcEEEe
Q 027819 155 HLVPGSTIYVEGN-LEQK--VFNDPITGLVRRIREIAIRRNGRLVFL 198 (218)
Q Consensus 155 ~LkKG~~V~VeG~-L~t~--~~~d~~dG~~r~~~eI~v~~~g~i~~L 198 (218)
.|+.|+.++|.+- ++.. .|.. .....+|.......|+.+
T Consensus 68 ~l~eG~vy~Is~~~V~~a~~~y~~-----~~~~yei~f~~~T~I~~~ 109 (114)
T 1ynx_A 68 ILQEGKVYYVSKAKLQPAKPQFTN-----LTHPYELNLDRDTVIEEC 109 (114)
T ss_dssp HSCSSSEEEEESCEEEECCTTTSS-----SSSCEEEEECSSCEEEES
T ss_pred hcccCcEEEECCcEEEECCCCccc-----CCCCEEEEECCCCEEEEC
Confidence 9999999999983 2221 2321 112456776655555554
No 33
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=94.55 E-value=0.6 Score=34.70 Aligned_cols=85 Identities=13% Similarity=0.188 Sum_probs=60.2
Q ss_pred CCCCCCceEEEEEEeCcCCeEEEcCCCcE--EEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHH
Q 027819 76 GLDPGIFKAILVGQVGQSPVQKKLKSGRT--VTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVM 153 (218)
Q Consensus 76 ~~~~~~N~v~LiGrIg~dPelr~~~nG~~--v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~ 153 (218)
.+.++++.|.++|.|-.--+.+...+|.. |+.+.|+= .|--+++++|++ .
T Consensus 8 dl~pg~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~D----------------------eTG~I~~tlW~~-~----- 59 (106)
T 2k75_A 8 DVSLSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIED----------------------DTARIRISSFGK-Q----- 59 (106)
T ss_dssp TCCTTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEC----------------------SSCEEEEEEESS-C-----
T ss_pred HcCCCCceEEEEEEEEEccccccccCCCeeEEEEEEEEc----------------------CCCeEEEEEEcC-c-----
Confidence 44567778999999988766666678874 55555431 122389999984 3
Q ss_pred hhcCCCCEEEEE-EEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeC
Q 027819 154 KHLVPGSTIYVE-GNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGK 200 (218)
Q Consensus 154 ~~LkKG~~V~Ve-G~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~ 200 (218)
|++|+.|.|. |..+ .|. | .++|.+...+.|+.++.
T Consensus 60 --l~~Gdvv~i~ng~v~--~~~----g----~~~L~v~~~~~I~~~~~ 95 (106)
T 2k75_A 60 --LQDSDVVRIDNARVA--QFN----G----YLSLSVGDSSRIESVNV 95 (106)
T ss_dssp --CCTTEEEEEEEEEEE--EET----T----EEEEEECTTSEEEECCS
T ss_pred --cCCCCEEEEEeeEEe--EEC----C----EEEEEECCcEEEEECCC
Confidence 9999999999 6665 463 3 46788887788887764
No 34
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=94.49 E-value=0.14 Score=37.56 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=52.7
Q ss_pred CCCCCceEEEEEEeCcCCeEEEc--CCCc--EEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHH
Q 027819 77 LDPGIFKAILVGQVGQSPVQKKL--KSGR--TVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVV 152 (218)
Q Consensus 77 ~~~~~N~v~LiGrIg~dPelr~~--~nG~--~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v 152 (218)
|.++ ..+.++|+|-.-.+.+.+ ++|. .+..+.|+= .|--+++++|+ ..|+.
T Consensus 8 l~~g-~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~D----------------------eTG~I~~tlW~-~~~~~- 62 (97)
T 3e0e_A 8 LMPN-LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKD----------------------DTGSIRGTLWN-ELADF- 62 (97)
T ss_dssp CCTT-EEEEEEEEEEEECCCEEEC----CCEEEEEEEEEE----------------------TTEEEEEEEEG-GGGGC-
T ss_pred CCCC-CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC----------------------CCCcEEEEEEC-Ccccc-
Confidence 4456 789999999988766664 3674 444444421 13357999998 56664
Q ss_pred HhhcCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcE
Q 027819 153 MKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRL 195 (218)
Q Consensus 153 ~~~LkKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i 195 (218)
.++.|+.|.|.|..+ .|. | .+++.+...|.|
T Consensus 63 --~i~~Gdvv~i~g~v~--~~~----~----~~el~~g~~~~i 93 (97)
T 3e0e_A 63 --EVKKGDIAEVSGYVK--QGY----S----GLEISVDNIGII 93 (97)
T ss_dssp --CCCTTCEEEEEEEEE--EC----------CEEEEEEEEEEE
T ss_pred --ccCCCCEEEEEEEEE--EcC----C----eEEEEECCCcEE
Confidence 699999999999663 332 2 457777744444
No 35
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=93.76 E-value=0.97 Score=33.97 Aligned_cols=86 Identities=13% Similarity=0.225 Sum_probs=57.4
Q ss_pred CCCCCceEEEEEEeCcCCeEE--EcCCCc-EEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHH
Q 027819 77 LDPGIFKAILVGQVGQSPVQK--KLKSGR-TVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVM 153 (218)
Q Consensus 77 ~~~~~N~v~LiGrIg~dPelr--~~~nG~-~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~ 153 (218)
|.++.+.+.++|.|-.--+.+ ...+|+ .+..+.|+=. |--+++.+|+ ..|
T Consensus 8 L~~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~----------------------TG~I~~tlW~-~~~---- 60 (119)
T 1o7i_A 8 LKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDE----------------------TGRVKLTLWG-KHA---- 60 (119)
T ss_dssp CCTTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEET----------------------TEEEEEEEEG-GGT----
T ss_pred CcCCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeC----------------------CCEEEEEEEC-Chh----
Confidence 334667788999998765444 456886 5555555321 1128999998 555
Q ss_pred hhcCCCCEEEEE-EEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEee
Q 027819 154 KHLVPGSTIYVE-GNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199 (218)
Q Consensus 154 ~~LkKG~~V~Ve-G~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~ 199 (218)
+.++.|+.|.|. |++. .|. | .+++.+...+.|..+.
T Consensus 61 ~~~~~G~vv~i~~g~v~--~~~----g----~~qL~i~~~~~i~~~~ 97 (119)
T 1o7i_A 61 GSIKEGQVVKIENAWTT--AFK----G----QVQLNAGSKTKIAEAS 97 (119)
T ss_dssp TCCCTTCEEEEEEEEEE--EET----T----EEEEEECTTCEEEECC
T ss_pred hcCCCCCEEEEEeEEEE--EeC----C----EEEEEECCCEEEEEcC
Confidence 358999999999 7665 463 3 2567777666777764
No 36
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=93.58 E-value=0.3 Score=36.31 Aligned_cols=84 Identities=12% Similarity=0.151 Sum_probs=55.9
Q ss_pred eEEEEEEeCcCCeEE--EcCCC--cEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCC
Q 027819 83 KAILVGQVGQSPVQK--KLKSG--RTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (218)
Q Consensus 83 ~v~LiGrIg~dPelr--~~~nG--~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkK 158 (218)
.+.++|.|..--+++ .+++| ..+..+.|+=. +--+++++|+ ..++.. +.|++
T Consensus 18 ~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~----------------------TG~I~~t~w~-~~~~~~-~~l~~ 73 (115)
T 2k50_A 18 ETPVTGRVMKISSPRTFTTRKGREGKLANVIIADD----------------------TGELRAVFWT-ENIKLL-KKFRE 73 (115)
T ss_dssp EEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEET----------------------TEEEEEEEET-TGGGGG-GTCCT
T ss_pred EeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeC----------------------CCeEEEEEeC-chhhhh-hcCCC
Confidence 569999999874566 45677 66766665321 2257899998 566644 67999
Q ss_pred CCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEe
Q 027819 159 GSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFL 198 (218)
Q Consensus 159 G~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L 198 (218)
|+.|.|.|..-...|.+. +++.+...+.|..+
T Consensus 74 G~vv~i~g~~v~~~f~g~--------~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 74 GDVIRIKDVNIRGGFGGR--------KEAHLMPRSTVEVL 105 (115)
T ss_dssp TSEEEEEEEEECCCSSSS--------CEEEECTTCCEEEE
T ss_pred CCEEEEEeeEEccccCCe--------EEEEECCCceEEEC
Confidence 999999998755557432 34555544444444
No 37
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=92.06 E-value=2.8 Score=31.03 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=58.2
Q ss_pred CCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCCC
Q 027819 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (218)
Q Consensus 80 ~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkKG 159 (218)
++|.|.|.|-|-. .+-..+ +.=.-.++...|.|-+ +.-|+|+-+-+-| ++|--+.+|.+|=
T Consensus 7 MLN~V~LEG~IeS---~kWS~k-KTGF~VTIkQkR~FGe--------------r~FTDyyViYAN~-QL~~ELEky~~k~ 67 (110)
T 2hql_A 7 MLNRVFLEGEIES---SCWSVK-KTGFLVTIKQMRFFGE--------------RLFTDYYVIYANG-QLAYELEKHTKKY 67 (110)
T ss_dssp CCEEEEEEEEEEE---EEECTT-CSEEEEEEEEEEEETT--------------EEEEEEEEEEEEH-HHHHHHHHHHTTC
T ss_pred eEEEEEEeeeeeh---hccccc-CceEEEEEeehhhhcc--------------ccceeEEEEEECC-eeehhHHHhhhhc
Confidence 6899999999865 233222 2112233444444422 2369999999987 9999999999999
Q ss_pred CEEEEEEEeEeeeeeCCCCCeEEEEEE
Q 027819 160 STIYVEGNLEQKVFNDPITGLVRRIRE 186 (218)
Q Consensus 160 ~~V~VeG~L~t~~~~d~~dG~~r~~~e 186 (218)
..+.|+|.|++.. ++..+-....++
T Consensus 68 k~isieG~L~TY~--ekkS~iWKTtI~ 92 (110)
T 2hql_A 68 KTISIEGILRTYL--ERKSEIWKTTIE 92 (110)
T ss_dssp SEEEEEEEEEEEE--ETTTTEEEEEEE
T ss_pred eEEEEeeehhhHH--HHhcccceeEEE
Confidence 9999999998753 432555444333
No 38
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=89.22 E-value=1.2 Score=36.98 Aligned_cols=103 Identities=14% Similarity=0.081 Sum_probs=67.0
Q ss_pred CCCCCCceEEEEEEeCcCCeEEEcCC-CcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHh
Q 027819 76 GLDPGIFKAILVGQVGQSPVQKKLKS-GRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMK 154 (218)
Q Consensus 76 ~~~~~~N~v~LiGrIg~dPelr~~~n-G~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~ 154 (218)
.|.++++.+.|.|+|..--++|...+ +..--.|++..- |. .. -+++++|+ .+|+....
T Consensus 13 ~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~----De---------------~G-~I~at~~~-~~~~~~~~ 71 (246)
T 1jmc_A 13 SLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELV----DE---------------SG-EIRATAFN-EQVDKFFP 71 (246)
T ss_dssp GCCTTCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEE----CS---------------SC-EEEEEEEH-HHHHHHGG
T ss_pred HCCCCCCceEEEEEEEEecccceeeCCCCCceEEEEEEE----CC---------------CC-eEEEEECh-HHHHHhhh
Confidence 56678899999999999887776642 122223454432 11 12 58999997 79999999
Q ss_pred hcCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCC
Q 027819 155 HLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKG 201 (218)
Q Consensus 155 ~LkKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k 201 (218)
.|+.|+.++|.+ ...+.+..+ --......+|.......|+.+...
T Consensus 72 ~l~~G~vy~i~~-~~v~~~~~~-y~~~~~~~ei~~~~~T~I~~~~~~ 116 (246)
T 1jmc_A 72 LIEVNKVYYFSK-GTLKIANKQ-FTAVKNDYEMTFNNETSVMPCEDD 116 (246)
T ss_dssp GCCTTCEEEEEC-CEEEECCGG-GCCCCCSEEEECCTTCEEEECCSC
T ss_pred hcccCCEEEECC-CEEEEcccC-cccCCCCEEEEEcCCcEEEEccCc
Confidence 999999999999 333333221 111122557777766667766543
No 39
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=88.83 E-value=7.6 Score=39.76 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=56.4
Q ss_pred CCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCc-hhHHHHHhhcC
Q 027819 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPE-RLGGVVMKHLV 157 (218)
Q Consensus 79 ~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~-k~Ae~v~~~Lk 157 (218)
.....|++.|.|-. -+.|.+.+|+.+..|.| +. -|+-+.|..|-. +....+.+.|+
T Consensus 15 ~~~~~~~~~g~v~~-~~~~~~~~~~~~~~~~~--td--------------------~~~~~~~k~f~~~~~~~~~~~~~~ 71 (1041)
T 3f2b_A 15 EEERRVVVQGYVFD-AEVSELKSGRTLLTMKI--TD--------------------YTNSILVKMFSRDKEDAELMSGVK 71 (1041)
T ss_dssp SCEEEEEEEEEEEE-EEEEECTTSCEEEEEEE--EC--------------------SSCEEEEEEECSSHHHHHHHHTCC
T ss_pred cccceEEEEEEEEE-EEEEEccCCCEEEEEEE--Ee--------------------CCCCEEEEEeecccchHHHHhcCC
Confidence 34678999999987 88899999998887777 22 134478888852 22233566799
Q ss_pred CCCEEEEEEEeEeeeeeC
Q 027819 158 PGSTIYVEGNLEQKVFND 175 (218)
Q Consensus 158 KG~~V~VeG~L~t~~~~d 175 (218)
+|+-|.|.|.++...|..
T Consensus 72 ~g~~~~~~g~~~~d~~~~ 89 (1041)
T 3f2b_A 72 KGMWVKVRGSVQNDTFVR 89 (1041)
T ss_dssp TTCEEEEEEEEEEETTTT
T ss_pred CCCEEEEEEEEEeccCCc
Confidence 999999999999998854
No 40
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=83.99 E-value=3.3 Score=37.75 Aligned_cols=100 Identities=10% Similarity=0.073 Sum_probs=65.3
Q ss_pred CCCCCCceEEEEEEeCcCCeEEEcCC--Cc-EEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHH
Q 027819 76 GLDPGIFKAILVGQVGQSPVQKKLKS--GR-TVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVV 152 (218)
Q Consensus 76 ~~~~~~N~v~LiGrIg~dPelr~~~n--G~-~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v 152 (218)
.|.|+++.++|.|+|..--.+|...+ |. .+ |++..- |. .. -+++++|+ .+++.+
T Consensus 8 ~L~p~~~~w~I~~rV~~k~~ir~~~~~~~~g~~--~~~~L~----De---------------~G-~I~at~~~-~~~~~f 64 (444)
T 4gop_C 8 GLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKL--FSVNLL----DD---------------SG-EIKATGFN-DAVDRF 64 (444)
T ss_dssp TCCTTCCSCEEEEECCEECCCEEEECSSCEEEE--EEEEEE----CS---------------SC-EEEEEEET-HHHHHH
T ss_pred HCCCCCcceEEEEEEEEccCcceecCCCCCceE--EEEEEE----cC---------------CC-EEEEEEeH-HHHHHH
Confidence 56678899999999998777776643 32 33 444332 11 12 58999998 799999
Q ss_pred HhhcCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeC
Q 027819 153 MKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGK 200 (218)
Q Consensus 153 ~~~LkKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~ 200 (218)
...|+.|+.++|.+- ..+.+..+ =-......+|....+..|..+..
T Consensus 65 ~~~l~eG~vy~Is~~-~V~~~~~~-y~~~~~~~ei~~~~~T~V~~~~d 110 (444)
T 4gop_C 65 YPLLQENHVYLISKA-RVNIAKKQ-FSNLQNEYEITFENSTEIEECTD 110 (444)
T ss_dssp TTTCCTTCEEEEESC-EEEECCGG-GCSCCCSEEEEECTTCEEEECSC
T ss_pred HHheecCCEEEEcCC-EEEecCCc-cccCCCCEEEEEcCCcEEEEccC
Confidence 999999999999983 22322221 00112245777776666776643
No 41
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=81.73 E-value=13 Score=34.17 Aligned_cols=79 Identities=16% Similarity=0.287 Sum_probs=55.2
Q ss_pred CCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCc-hhHHHHHhhcC
Q 027819 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPE-RLGGVVMKHLV 157 (218)
Q Consensus 79 ~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~-k~Ae~v~~~Lk 157 (218)
.....+.+.|.|...|.. .+.|..+ |+|-.+ +.-++|++|-+ +.-..+...|.
T Consensus 282 ~~~~~~~v~G~V~~~P~~--~~GGHV~--f~l~d~----------------------~~~i~c~ayeptk~fr~~vr~L~ 335 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYD--IEGGHVF--FEIDTK----------------------FGSVKCAAFEPTKQFRNVIRLLR 335 (402)
T ss_dssp CTTCEEEEEEEEEEEEEE--ETTTEEE--EEEEET----------------------TEEEEEEECGGGTTHHHHHTTCC
T ss_pred ccCceEEEEEEEecCcEe--ccCceEE--EEEEcC----------------------CCEEEEEEEccchHHHHHHhcCC
Confidence 355689999999998855 5677755 444321 12379999941 34566777899
Q ss_pred CCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeC
Q 027819 158 PGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGK 200 (218)
Q Consensus 158 KG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~ 200 (218)
.||.|.|-|.+.. | .|.++ +|+.++-
T Consensus 336 ~GD~V~v~G~v~~--------g------tLnvE---k~~v~~l 361 (402)
T 3au7_A 336 KGDVVEVYGSMKK--------D------TINLE---KIQIVEL 361 (402)
T ss_dssp TTCEEEEEEEEET--------T------EEEEE---EEEEEEC
T ss_pred CCCEEEEEEeecC--------C------EEEEE---EEEEccc
Confidence 9999999999443 4 46677 7777655
No 42
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=81.52 E-value=17 Score=28.55 Aligned_cols=100 Identities=16% Similarity=0.231 Sum_probs=61.6
Q ss_pred CCcccccccccCCCCCCCceEEEEEEeCcCCeEE---EcC--CC--------cEEEEEEEEeCceecCCCCCCCCCCccc
Q 027819 64 QQRESFDRPLENGLDPGIFKAILVGQVGQSPVQK---KLK--SG--------RTVTLFSLGTGGIRNNRRPLENENPTEY 130 (218)
Q Consensus 64 ~~r~~~~r~~~~~~~~~~N~v~LiGrIg~dPelr---~~~--nG--------~~v~~FsVav~~~~~dr~~g~~g~~~ey 130 (218)
..|.+.+..+. .|.++++.+.|+|+|-..-+.+ .+. +| ..++...||=
T Consensus 10 ~~~kp~~~kI~-dL~pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgD------------------ 70 (145)
T 1wjj_A 10 VKRKPVFVKVE-QLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGD------------------ 70 (145)
T ss_dssp CCCCCSSCCST-TCCTTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEEC------------------
T ss_pred cccCccceEHH-HcCCCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEc------------------
Confidence 34444444443 5567778899999997754433 221 23 2355543321
Q ss_pred cccCceeEEEEEEeCchhHHHHHhhcCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeC
Q 027819 131 ANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGK 200 (218)
Q Consensus 131 ~d~~~t~w~~V~~wg~k~Ae~v~~~LkKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~ 200 (218)
.|=-+++++|+ .+++ .|+.||.|.|.+-.- +.|. | .+++.+...|.|+.++.
T Consensus 71 ----eTG~I~ftlW~-e~~~----~l~~Gd~v~i~na~v-~~~~----G----~~~L~vgk~g~Ie~~~e 122 (145)
T 1wjj_A 71 ----ETGCILFTARN-DQVD----LMKPGATVILRNSRI-DMFK----G----TMRLGVDKWGRIEATGA 122 (145)
T ss_dssp ----SSCEEEEEECT-THHH----HTCTTCEEEEEEEEE-EEET----T----EEEEEECTTCCBCCCSC
T ss_pred ----CCcEEEEEEec-CCcC----cCCCCCEEEEeccEE-EeEC----C----EEEEEECCCEEEEECCC
Confidence 23347999998 4554 488999999987433 3474 3 46788887788887754
No 43
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=76.44 E-value=6.3 Score=33.41 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=39.7
Q ss_pred eeEEEEEEeCchhHHHHHhhcCCCCEEEEEEEeEeeeee--CCCCCeEEEEEEEEEEeCCcEEEeeC
Q 027819 136 VQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFN--DPITGLVRRIREIAIRRNGRLVFLGK 200 (218)
Q Consensus 136 t~w~~V~~wg~k~Ae~v~~~LkKG~~V~VeG~L~t~~~~--d~~dG~~r~~~eI~v~~~g~i~~L~~ 200 (218)
+..+.|.+.++ +.+.++.||.|.|.|-+...... .+ .+...+.+.|.|. +|+.+++
T Consensus 210 Prsi~v~l~~d-----Lvd~~~PGDrV~vtGI~~~~~~~~~~~-~~~~~~~~yl~an---~I~~~~~ 267 (268)
T 2vl6_A 210 PRQLEIILEDD-----LVDSARPGDRVKVTGILDIKQDSPVKR-GSRAVFDIYMKVS---SIEVSQK 267 (268)
T ss_dssp CCEEEEEEEGG-----GTTSSCTTCEEEEEEEEEEECSSTTCC-SSCCEEEEEEEEE---EEEEC--
T ss_pred CcEEEEEEccC-----ccCcccCCCEEEEEEEEEEeecccccC-CCceEEEEEEEEE---EEEEecc
Confidence 34566777753 55679999999999999987543 22 4456778888888 8887754
No 44
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=67.03 E-value=16 Score=27.75 Aligned_cols=62 Identities=13% Similarity=0.078 Sum_probs=42.1
Q ss_pred CCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHH---HHhhc
Q 027819 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGV---VMKHL 156 (218)
Q Consensus 80 ~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~---v~~~L 156 (218)
.++.|.|+|.|-.- ..+..++.|.|. | + |--+.|..|. ...+. -...+
T Consensus 35 ~i~~V~iVG~V~~~------~~~~~~~~~~ld------D------~----------TG~I~~~~W~-~~~~~~~~~~~~~ 85 (136)
T 4gop_B 35 ELGQLTFVAVVRNI------SRNATNVAYSVE------D------G----------TGQIEVRQWL-DSSSDDSSKASEI 85 (136)
T ss_dssp BCCEEEEEEEEEEE------EECSSEEEEEEE------C------S----------SCEEEEEEEC-C--------CCSC
T ss_pred EEEEEEEEEEEEEE------EecCCeEEEEEE------C------C----------CCCEEEEEec-ccCCccccccccc
Confidence 57899999999772 234567777772 1 1 2248899996 33321 24569
Q ss_pred CCCCEEEEEEEeEe
Q 027819 157 VPGSTIYVEGNLEQ 170 (218)
Q Consensus 157 kKG~~V~VeG~L~t 170 (218)
+.|+.|.|.|+++.
T Consensus 86 ~~g~yVrV~G~v~~ 99 (136)
T 4gop_B 86 RNNVYVRVLGTLKS 99 (136)
T ss_dssp CTTCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEE
Confidence 99999999999966
No 45
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=63.44 E-value=7.8 Score=33.16 Aligned_cols=55 Identities=20% Similarity=0.143 Sum_probs=37.2
Q ss_pred eeEEEEEEeCchhHHHHHhhcCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCCC
Q 027819 136 VQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGG 202 (218)
Q Consensus 136 t~w~~V~~wg~k~Ae~v~~~LkKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k~ 202 (218)
+..+.|.+.++ +.+.++.||.|.|.|-+... |. .+...+.+.|.|. .|+.++.+.
T Consensus 197 Prsi~V~l~~d-----Lvd~~~PGDrV~vtGI~~~~-~~---~~~~~~~~~l~a~---~I~~~~~~~ 251 (279)
T 1ltl_A 197 PRQITVVLEDD-----LVDTLTPGDIVRVTGTLRTV-RD---ERTKRFKNFIYGN---YTEFLEQEF 251 (279)
T ss_dssp CCEEEEEEEGG-----GTTCCCTTCEEEEEEEEEEE-EE---TTTTEEEEEEEEE---ECCBC----
T ss_pred CeEEEEEEccc-----ccCccCCCCEEEEEEEEEEe-eC---CCCceEEEEEEEE---EEEEecCcc
Confidence 45667777763 56689999999999999887 33 2344667777888 777665543
No 46
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=61.78 E-value=22 Score=26.77 Aligned_cols=62 Identities=15% Similarity=0.218 Sum_probs=40.1
Q ss_pred CCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCcee-EEEEEEeCchhHH--HHHhhc
Q 027819 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQ-WHRVSVYPERLGG--VVMKHL 156 (218)
Q Consensus 80 ~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~-w~~V~~wg~k~Ae--~v~~~L 156 (218)
.++.|.|+|.|-.- .....+..|.|.= + |- -+.|..|.+ ... .-...+
T Consensus 30 ~i~~V~iVG~V~~~------~~~~~~~~~~ldD------------~----------TG~~I~~~~W~~-~~~~~~~~~~~ 80 (132)
T 3kdf_D 30 EISQVTIVGIIRHA------EKAPTNIVYKIDD------------M----------TAAPMDVRQWVD-TDDTSSENTVV 80 (132)
T ss_dssp ECCEEEEEEEEEEE------EECSSEEEEEEEC------------S----------SSSCEEEEEEC----------CCC
T ss_pred EEEEEEEEEEEEEE------EEcCCeEEEEEEC------------C----------CCCEEEEEEEcc-CCCcccccccc
Confidence 57899999999772 2334566677621 1 22 468888862 221 224569
Q ss_pred CCCCEEEEEEEeEe
Q 027819 157 VPGSTIYVEGNLEQ 170 (218)
Q Consensus 157 kKG~~V~VeG~L~t 170 (218)
+.|+-|.|.|.|+.
T Consensus 81 ~~g~yVrV~G~l~~ 94 (132)
T 3kdf_D 81 PPETYVKVAGHLRS 94 (132)
T ss_dssp CTTCEEEEEEEEEE
T ss_pred cCCCEEEEEEEEEe
Confidence 99999999999887
No 47
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=60.91 E-value=6.3 Score=31.08 Aligned_cols=74 Identities=11% Similarity=0.040 Sum_probs=44.0
Q ss_pred eEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCC---CCCccccccCceeEEEEEEeCchhHHHHHhhcCCC
Q 027819 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLEN---ENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (218)
Q Consensus 83 ~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~---g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkKG 159 (218)
-+-|+|.|.+.+ + ++ -.|.|.++.+-.++..-.- ++...|.-.-..--++|.+|. ..|..+.++|+.|
T Consensus 16 F~Dl~~qVv~~~---~--~~---~~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd-~ha~~ar~~lk~G 86 (143)
T 4hik_A 16 RCSFYAQVIKTW---Y--SD---KNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWD-EHDFYCRNYIKEG 86 (143)
T ss_dssp EEEEEEEEEEEE---E--CS---SCEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECH-HHHHHHTTTCCTT
T ss_pred eEEEEEEEEEEE---c--CC---CeEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEEC-cHHHHHHhhCCCC
Confidence 466888888733 1 22 2366777766444321100 000122111123347999995 8999999999999
Q ss_pred CEEEEE
Q 027819 160 STIYVE 165 (218)
Q Consensus 160 ~~V~Ve 165 (218)
+-|.+.
T Consensus 87 d~v~L~ 92 (143)
T 4hik_A 87 DYVVMK 92 (143)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 999863
No 48
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=53.61 E-value=17 Score=37.77 Aligned_cols=64 Identities=27% Similarity=0.307 Sum_probs=27.9
Q ss_pred eEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCCCCEE
Q 027819 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTI 162 (218)
Q Consensus 83 ~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkKG~~V 162 (218)
+|.+.|-|.. -..+.+++|+.++-++|.- .+--+.|++|+ +.-+.....|..|..|
T Consensus 1044 ~v~v~G~v~~-~~~~~Tk~G~~maf~tleD----------------------~tg~~evvvf~-~~~~~~~~~l~~~~~~ 1099 (1220)
T 2hpi_A 1044 KVLLSGMVEE-VVRKPTRSGGMMARFTLSD----------------------ETGALEVVVFG-RAYEGVSPKLKEDIPL 1099 (1220)
T ss_dssp EEEEEEEECC-C------------CEEEEE----------------------TTEEEEEC--------------CTTCEE
T ss_pred eEEEEEEEEE-EEEeecCCCCeEEEEEEEE----------------------CCCCEEEEEcH-HHHHHHHHHhccCCEE
Confidence 4777777765 4555677888877776632 12237899997 7778888899999999
Q ss_pred EEEEEeEe
Q 027819 163 YVEGNLEQ 170 (218)
Q Consensus 163 ~VeG~L~t 170 (218)
+|.|+++.
T Consensus 1100 ~v~G~v~~ 1107 (1220)
T 2hpi_A 1100 LVLAEVEK 1107 (1220)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEEE
Confidence 99999974
No 49
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=49.49 E-value=67 Score=27.12 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=22.2
Q ss_pred EEEEEEeCchhHH--HHHhhcCCCCEEEEEEEeEe
Q 027819 138 WHRVSVYPERLGG--VVMKHLVPGSTIYVEGNLEQ 170 (218)
Q Consensus 138 w~~V~~wg~k~Ae--~v~~~LkKG~~V~VeG~L~t 170 (218)
-+.|.+|. ...+ .-...++.|+.|.|.|+++.
T Consensus 101 ~I~~k~W~-~~~~~~~~~~~~~~G~yVrV~G~v~~ 134 (270)
T 2pi2_A 101 PMDVRQWV-DTDDTSSENTVVPPETYVKVAGHLRS 134 (270)
T ss_dssp CEEEEEEC-C-------CCCCCTTCEEEEEEEEEE
T ss_pred EEEEEEEc-CcCcccchhhcCCCCCEEEEEEEEEe
Confidence 47888996 3322 13456999999999999885
No 50
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=47.91 E-value=24 Score=24.46 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=25.0
Q ss_pred EEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCC
Q 027819 166 GNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKG 201 (218)
Q Consensus 166 G~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k 201 (218)
|.-+.+.|+|. +|.-+--.+++.-.+|+|+++...
T Consensus 1 ~p~k~RtWtDr-tG~F~VeA~flg~~dgki~LhK~n 35 (68)
T 2hbp_A 1 GSKKSRLWVDR-SGTFKVDAEFIGCAKGKIHLHKAN 35 (68)
T ss_dssp --CCSEEEEBS-SSCCEEEEEEEEEETTEEEEECTT
T ss_pred CCccccEEEcC-CCCeEEEEEEEEEeCCEEEEEecC
Confidence 34567999999 998665666655558999998643
No 51
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=37.15 E-value=1.2e+02 Score=21.99 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=51.0
Q ss_pred CCCCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhc
Q 027819 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHL 156 (218)
Q Consensus 77 ~~~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~L 156 (218)
+.++...|.++|+|-.--+ ..+|..+....|+ | .|=-+++++|++. ....+
T Consensus 11 l~~~~~~v~v~~~V~~~~~---~~~~~~~~~~~l~------D----------------eTG~I~~t~W~~~----~~~~~ 61 (109)
T 2kbn_A 11 IVENGQWANLKAKVIQLWE---NTHESISQVGLLG------D----------------ETGIIKFTIWKNA----ELPLL 61 (109)
T ss_dssp CCSTTCEEEEEEEEEEEEE---CCCSSEEEEEEEE------C----------------TTCCEEEEEEGGG----CCCCC
T ss_pred CCCCCCcEEEEEEEEEeEc---CCCCeEEEEEEEE------C----------------CCCeEEEEEECcc----ccccc
Confidence 3345567889999877322 2344544332221 1 1223799999732 23479
Q ss_pred CCCCEEEEE-EEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEee
Q 027819 157 VPGSTIYVE-GNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199 (218)
Q Consensus 157 kKG~~V~Ve-G~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~ 199 (218)
+.|+.|.|. |..+. |. | .++|.+...+.|..++
T Consensus 62 ~~G~~V~i~n~~v~~--~~----G----~~~L~v~~~~~I~~~~ 95 (109)
T 2kbn_A 62 EQGESYLLRSVVVGE--YN----D----RFQVQVNKNSSIEKLS 95 (109)
T ss_dssp CTTCEEEEEEEEEEE--ET----T----EEEEEECSSSEEEECS
T ss_pred CCCCEEEEEEEEEEE--EC----C----EEEEEECCceEEEECC
Confidence 999999999 56655 63 3 3567777556666654
No 52
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=35.61 E-value=83 Score=25.56 Aligned_cols=68 Identities=9% Similarity=0.036 Sum_probs=42.0
Q ss_pred eEEEEEEeCcCCeEEEc--C-CCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCCC
Q 027819 83 KAILVGQVGQSPVQKKL--K-SGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (218)
Q Consensus 83 ~v~LiGrIg~dPelr~~--~-nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkKG 159 (218)
-+-++|.|..--+++.. . +|+......+.... . ...-++|++|| ..|+.+. ...|
T Consensus 140 ~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D----~---------------sg~~i~~tLWg-~~a~~~~--~~~~ 197 (246)
T 1jmc_A 140 LVDIIGICKSYEDATKITVRSNNREVAKRNIYLMD----T---------------SGKVVTATLWG-EDADKFD--GSRQ 197 (246)
T ss_dssp EEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEEC----T---------------TCCEEEEEEEH-HHHHHCC--CTTC
T ss_pred ceeEEEEEEEecCeEEEEEecCCCccEEEEEEEEC----C---------------CCCEEEEEEEc-hhhhhcc--cCCC
Confidence 57899998865554433 2 57665555544421 1 12247999998 7887654 5778
Q ss_pred CEEEEEEEeEeeee
Q 027819 160 STIYVEGNLEQKVF 173 (218)
Q Consensus 160 ~~V~VeG~L~t~~~ 173 (218)
+.|.+.|- +...|
T Consensus 198 ~vv~i~~~-~v~~f 210 (246)
T 1jmc_A 198 PVLAIKGA-RVSDF 210 (246)
T ss_dssp CEEEEEEE-EEECT
T ss_pred CEEEEEEE-EEEec
Confidence 77666664 44556
No 53
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=33.21 E-value=1.1e+02 Score=24.15 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=50.2
Q ss_pred CCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchh-H--HHHHhhc
Q 027819 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERL-G--GVVMKHL 156 (218)
Q Consensus 80 ~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~-A--e~v~~~L 156 (218)
.++.|.|+|.|..-- ..+ ....|+| . ++ -..-+.|++|- .. + ..+...+
T Consensus 46 PI~~V~IvGiVv~~~---~~~---~~~~ytI--D----------D~---------TG~~I~cv~w~-~~~~~~~~~~~~l 97 (159)
T 3kf6_A 46 PIRWIQIVGYIAAID---IYE---GKHVLTV--D----------DC---------SGMVLRVVFII-QDDFSMSKRAISM 97 (159)
T ss_dssp EECEEEEEEEEEEEE---EET---TEEEEEE--E----------CS---------SSCEEEEEEEG-GGCHHHHHHHTTC
T ss_pred EEEEEEEEEEEEEEE---EeC---CEEEEEE--e----------cC---------CCCeEEEEEEc-cCCCCcccccccC
Confidence 678999999998822 111 1233333 1 12 12367999996 43 2 2344458
Q ss_pred CCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeC
Q 027819 157 VPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGK 200 (218)
Q Consensus 157 kKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~ 200 (218)
..|+.|.|.|.|++ |.++ .+|.|. +|..++.
T Consensus 98 ~~G~~VrV~G~v~~--fr~~--------rqI~~~---~i~~v~d 128 (159)
T 3kf6_A 98 SPGNVVCVFGKINS--FRSE--------VELIAQ---SFEELRD 128 (159)
T ss_dssp CTTCEEEEEEEEEC--SSSS--------CEEEEE---EEEEECS
T ss_pred CCCCEEEEEEEEEe--eCCE--------EEEEEE---EEEECCC
Confidence 99999999999976 4332 257777 7777754
No 54
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=32.84 E-value=1.4e+02 Score=24.96 Aligned_cols=94 Identities=12% Similarity=0.112 Sum_probs=53.3
Q ss_pred CCceEEEEEEeCcCCeEEEcC-C--CcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhh-
Q 027819 80 GIFKAILVGQVGQSPVQKKLK-S--GRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKH- 155 (218)
Q Consensus 80 ~~N~v~LiGrIg~dPelr~~~-n--G~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~- 155 (218)
.+++|-|+|.|...-+. ... + ...++.|.| . |. .| ....+.|.+-- +.+....
T Consensus 84 PI~~V~IvG~VVg~~~k-~~r~~~~~~~~~~l~I--D----Ds----SG---------~~s~i~~k~~~---~~~~~~gl 140 (220)
T 3kf8_A 84 PVNQINIFGKIVYEQYK-EKEFNGVEESYVILVI--S----DF----IG---------IDSKIRVRLSQ---EQFKEVGL 140 (220)
T ss_dssp EECEEEEEEEEEEEEEE-CCBCSSCBCCEEEEEE--E----CC----CS---------SSCEEEEEEEH---HHHHTTTC
T ss_pred ccEEEEEEEEEEEEEEE-eccccccccceEEEEE--e----CC----CC---------CCceEEEEecH---HHhhccCc
Confidence 57899999999884332 222 1 233444443 2 21 12 22345565542 2332222
Q ss_pred ----cCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCC
Q 027819 156 ----LVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKG 201 (218)
Q Consensus 156 ----LkKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k 201 (218)
.--|..|.|.|.+.+. .+..+...+...||.|+ +|.+|+..
T Consensus 141 ~l~~~~~G~iV~VkG~i~~~--r~~~~~~~~~~rei~ve---~i~vl~~~ 185 (220)
T 3kf8_A 141 TLDKKNYGKIVELEGEIYNW--YDSINVSKKPDRELKVS---KITVLSHR 185 (220)
T ss_dssp CTTSCCTTCEEEEEEEEEEC--CCSTTTTSCCCEEEEEE---EEEEEESS
T ss_pred cccccCCCeEEEEEEEEEee--ccccccccccceEEEEE---EEEEeccC
Confidence 2369999999999974 22112222334489999 99999765
No 55
>2wkd_A ORF34P2; SSB, single-stranded DNA binding, DNA binding protein; 2.10A {Lactococcus phage P2} PDB: 2wkc_A
Probab=32.78 E-value=85 Score=23.65 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=26.4
Q ss_pred eeEEEEEEeCchhHHHHHhhcCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCCCCCCCCCCccCCCC
Q 027819 136 VQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGGDAQPPSPSEVRGA 215 (218)
Q Consensus 136 t~w~~V~~wg~k~Ae~v~~~LkKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k~~~~~~~~~e~~~~ 215 (218)
.-|.--.+|- -..+.-||.|.|.|+++... +|+..+.--..+.- +=.|+.+.+...++...+|.|.
T Consensus 41 ~k~~ygsaf~-------pd~v~~GDivTvsgri~~ke-----~G~y~nyNf~fptV--e~~f~~~dn~s~s~~~~Dlfgg 106 (119)
T 2wkd_A 41 VKVAYGSAFM-------PDFIQMGDTVTVSGRVQAKE-----SGEYVNYNFVFPTV--EKVFITNDNSSQSQAKQDLFGG 106 (119)
T ss_dssp CCCCEEEEEC-------CTTCCTTCEEEEEEEEEEC-----------CEEEEEEEE--EEECC-----------------
T ss_pred eeeEEEEEec-------cccccCCcEEEEeceeeeec-----cCceEeeeeeccee--eeEEeeCCCCCcCCccccccCC
Confidence 4565566663 35799999999999998763 45433322222220 2234555445555566677665
Q ss_pred c
Q 027819 216 G 216 (218)
Q Consensus 216 ~ 216 (218)
|
T Consensus 107 ~ 107 (119)
T 2wkd_A 107 S 107 (119)
T ss_dssp -
T ss_pred C
Confidence 4
No 56
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=32.07 E-value=1.2e+02 Score=28.04 Aligned_cols=79 Identities=18% Similarity=0.234 Sum_probs=51.3
Q ss_pred eEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHH---HHHhhcCCC
Q 027819 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGG---VVMKHLVPG 159 (218)
Q Consensus 83 ~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae---~v~~~LkKG 159 (218)
+|+|.|+|-. .|. .|+ + .|-..-.+ +.-+.|++-.+...+ ...+.|..|
T Consensus 58 ~V~v~Gwv~~---~R~--~gk-~-~F~~LrD~---------------------sg~iQvv~~~~~~~~~~~~~~~~l~~g 109 (493)
T 3a74_A 58 EVAVAGRIMT---KRG--MGK-A-GFAHIQDV---------------------TGQIQIYVRQDDVGEQQYELFKISDLG 109 (493)
T ss_dssp EEEEEEEEEE---EEE--ETT-E-EEEEEEET---------------------TEEEEEEEEHHHHHHHHHHHHHHCCTT
T ss_pred EEEEEEEEEE---Eec--CCC-c-EEEEEEEC---------------------CEeEEEEEECCcCCHHHHHHHhcCCCC
Confidence 6999999977 343 243 2 34433221 124677665321221 133679999
Q ss_pred CEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCC
Q 027819 160 STIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKG 201 (218)
Q Consensus 160 ~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k 201 (218)
|.|.|+|.+... + .| .++|.|. +|++|++.
T Consensus 110 ~~v~V~G~v~~~----~-~g----e~ei~~~---~i~vl~~~ 139 (493)
T 3a74_A 110 DIVGVRGTMFKT----K-VG----ELSIKVS---SYEFLTKA 139 (493)
T ss_dssp CEEEEEEEEEEC----T-TC----CEEEEEE---EEEEEECC
T ss_pred CEEEEEEEEEeC----C-CC----cEEEEEE---EEEEcccc
Confidence 999999999765 3 55 3699999 99999865
No 57
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=31.70 E-value=1.7e+02 Score=26.97 Aligned_cols=46 Identities=15% Similarity=0.061 Sum_probs=33.8
Q ss_pred HHhhcCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCCC
Q 027819 152 VMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGG 202 (218)
Q Consensus 152 v~~~LkKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k~ 202 (218)
..+.|..|+.|.|+|.+..+.=..+ .+ ..-.+||.|. +|++|++..
T Consensus 86 ~~~~l~~e~~V~V~G~v~~~~~~~~-~~-~~g~~El~~~---~i~vl~~a~ 131 (487)
T 1eov_A 86 WAGSLNLESIVLVRGIVKKVDEPIK-SA-TVQNLEIHIT---KIYTISETP 131 (487)
T ss_dssp HHTTCCTTCEEEEEEEEEECSSCCT-TS-SEEEEEEEEE---EEEEEECCC
T ss_pred HHhcCCCCCEEEEEEEEEeCCCCCc-CC-CCCcEEEEEE---EEEEeeccc
Confidence 4457999999999999987742221 12 2346899999 999998753
No 58
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=29.64 E-value=50 Score=27.16 Aligned_cols=91 Identities=9% Similarity=0.146 Sum_probs=50.7
Q ss_pred eEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCCCCEE
Q 027819 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTI 162 (218)
Q Consensus 83 ~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkKG~~V 162 (218)
...++|-|...-+.|.+.+|+.+..+.|..=.. ....+.+-+|| ...+. ...+..|+.|
T Consensus 57 dwv~~GVV~~Ks~pk~~~~gk~y~~w~l~DL~~-------------------~~~~V~lfLFg-~a~~~-~~k~~~G~Vi 115 (200)
T 3ebe_A 57 DWVTFGVIVKKITPQSSNNGKTFSIWRLNDLKD-------------------LDKYISLFLFG-DVHKE-HWKTDQGTVI 115 (200)
T ss_dssp CEEEEEEEEEEECC-------CCEEEEEECSSS-------------------TTCCEEEEECH-HHHHH-HTTCCTTEEE
T ss_pred CEEEEEEEEecCCccCcCCCCeEEEEEEEecCC-------------------CCcEEEEEEec-hHHHH-hcCcCCceEE
Confidence 578889999888888888999888777653211 12347889998 44444 4469999988
Q ss_pred EEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeC
Q 027819 163 YVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGK 200 (218)
Q Consensus 163 ~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~ 200 (218)
.|- ....|..+ +|.... .+.++....|-.|+.
T Consensus 116 aiL---NP~i~~~~-~~~~~~--sLsv~~~~~Il~IG~ 147 (200)
T 3ebe_A 116 GLL---NANPMKPK-EGTDEV--CLSVDNPQKVLLMGD 147 (200)
T ss_dssp EEE---SCEECCCC-TTCCCE--EEECSSGGGEEEEEE
T ss_pred EEE---CCEEccCC-CCCcce--EEEECCcccEEEEEe
Confidence 774 44456555 453322 233333334554443
No 59
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=29.10 E-value=1.1e+02 Score=28.61 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=51.4
Q ss_pred ceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchh---H--HHHHhhc
Q 027819 82 FKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERL---G--GVVMKHL 156 (218)
Q Consensus 82 N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~---A--e~v~~~L 156 (218)
..|.|.|+|-. .|. .|+.++ |-..-.+ +.-+.|++-.+.. . +.+.+.|
T Consensus 56 ~~V~v~Grv~~---~R~--~gkk~~-F~~LrD~---------------------sg~iQvv~~~~~~~~~~~~~~~~~~l 108 (521)
T 3bju_A 56 ITLKVAGRIHA---KRA--SGGKLI-FYDLRGE---------------------GVKLQVMANSRNYKSEEEFIHINNKL 108 (521)
T ss_dssp CCEEEEEEEEE---EEE--SSSSEE-EEEEEET---------------------TEEEEEEEEGGGSSCHHHHHHHHHHC
T ss_pred cEEEEEEEEEE---Eec--CCCCcE-EEEEEEC---------------------CEEEEEEEECCccCCHHHHHHHHhcC
Confidence 36999999976 343 342333 4333221 1235666653221 1 1233569
Q ss_pred CCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCC
Q 027819 157 VPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKG 201 (218)
Q Consensus 157 kKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k 201 (218)
..||.|.|+|.+... + .| .++|.|. +|++|++.
T Consensus 109 ~~gd~V~V~G~v~~t----~-~g----e~ei~~~---~i~~l~~~ 141 (521)
T 3bju_A 109 RRGDIIGVQGNPGKT----K-KG----ELSIIPY---EITLLSPC 141 (521)
T ss_dssp CTTCEEEEEEEEEEC----T-TC----CEEEEEE---EEEEEECC
T ss_pred CCCCEEEEEEEEEec----C-CC----CEEEEEe---EEEEeecC
Confidence 999999999998765 2 45 3789999 99999865
No 60
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=27.67 E-value=1.1e+02 Score=28.83 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=30.4
Q ss_pred HHhhcCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCC
Q 027819 152 VMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKG 201 (218)
Q Consensus 152 v~~~LkKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k 201 (218)
..+.|..||.|.|+|.+.. .+ .| .++|.|+ +|++|++.
T Consensus 132 ~~~~l~~gd~V~V~G~v~~----t~-~g----elel~~~---~i~vLs~a 169 (529)
T 4ex5_A 132 AFKKWDLGDIVAARGVLFR----TN-KG----ELSVKCT---QLRLLAKA 169 (529)
T ss_dssp HHHTCCTTCEEEEEEEEEE----CT-TS----CEEEEEE---EEEEEECC
T ss_pred HHhcCCCCCEEEEEEEEEE----cC-CC----cEEEEEE---EEEEEecC
Confidence 3456999999999999975 23 56 3789999 99999875
No 61
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=25.12 E-value=1e+02 Score=28.65 Aligned_cols=37 Identities=30% Similarity=0.293 Sum_probs=30.6
Q ss_pred HhhcCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCC
Q 027819 153 MKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKG 201 (218)
Q Consensus 153 ~~~LkKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k 201 (218)
.+.|..||.|.|+|.+... + .| .++|.|. +|++|++.
T Consensus 112 ~~~l~~g~~V~V~G~v~~~----~-~g----e~ei~~~---~i~vl~~a 148 (504)
T 1e1o_A 112 FKKWDLGDIIGARGTLFKT----Q-TG----ELSIHCT---ELRLLTKA 148 (504)
T ss_dssp GGGCCTTCEEEEEEEEEEC----T-TC----CEEEEEE---EEEEEECC
T ss_pred HhcCCCCCEEEEEEEEEec----C-Cc----eEEEEEE---EEEEeccc
Confidence 3679999999999999765 3 55 3689999 99999865
No 62
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=24.52 E-value=1.2e+02 Score=27.51 Aligned_cols=82 Identities=20% Similarity=0.156 Sum_probs=51.7
Q ss_pred ceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCCCCE
Q 027819 82 FKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGST 161 (218)
Q Consensus 82 N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkKG~~ 161 (218)
.+|+|.|+|-+ +|.. |+ + .|-..-.+ +.-+.|++-.+...-...+.|..|+.
T Consensus 17 ~~V~v~Gwv~~---~R~~--g~-~-~F~~lrD~---------------------~g~iQ~v~~~~~~~~~~~~~l~~~~~ 68 (429)
T 1wyd_A 17 KEVIWAGWVHL---LRDL--GG-K-KFIILRDK---------------------TGLGQVVVDKNSSAFGISQELTQESV 68 (429)
T ss_dssp CEEEEEEEEEE---EEEE--TT-E-EEEEEEET---------------------TEEEEEEECTTSTTHHHHTTCCTTCE
T ss_pred CEEEEEEEEEE---EecC--CC-e-EEEEEEEC---------------------CeeEEEEEeCChHHHHHHHhCCCCCE
Confidence 36999999977 4433 44 2 34433221 11267776532111113367999999
Q ss_pred EEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCC
Q 027819 162 IYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKG 201 (218)
Q Consensus 162 V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k 201 (218)
|.|+|.+.... .. .| .+||.|+ +|++|++.
T Consensus 69 v~v~G~v~~~~--~~-~~----~~el~~~---~~~vl~~~ 98 (429)
T 1wyd_A 69 IQVRGIVKADK--RA-PR----GIELHAE---EITLLSKA 98 (429)
T ss_dssp EEEEEEEEECS--SS-GG----GEEEEEE---EEEEEECC
T ss_pred EEEEEEEEecC--CC-Cc----cEEEEEe---EEEEeccC
Confidence 99999998763 11 22 4789999 99999875
No 63
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=24.27 E-value=27 Score=27.39 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.2
Q ss_pred EeCchhHHHHHhhcCCCCEEEEE
Q 027819 143 VYPERLGGVVMKHLVPGSTIYVE 165 (218)
Q Consensus 143 ~wg~k~Ae~v~~~LkKG~~V~Ve 165 (218)
+.| ++|..+++.|..||.|.|.
T Consensus 10 ~LG-RLAs~vAk~L~~Gd~VVVi 31 (142)
T 1j3a_A 10 ILG-RLASRVAKMLLEGEEVVIV 31 (142)
T ss_dssp BHH-HHHHHHHHHHHTTCCEEEE
T ss_pred chH-HHHHHHHHHHhcCCEEEEE
Confidence 346 8999999999999999986
No 64
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=23.60 E-value=28 Score=27.43 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=18.6
Q ss_pred eCchhHHHHHhhcCCCCEEEEE
Q 027819 144 YPERLGGVVMKHLVPGSTIYVE 165 (218)
Q Consensus 144 wg~k~Ae~v~~~LkKG~~V~Ve 165 (218)
.| ++|..+++.|..||.|.|.
T Consensus 19 LG-RLAs~vAk~L~~Gd~VVVi 39 (145)
T 1vq8_J 19 MG-RVASQVAEQALDGETVAVV 39 (145)
T ss_dssp HH-HHHHHHHHHHHTTCCEEEE
T ss_pred hH-HHHHHHHHHHhcCCEEEEE
Confidence 45 8999999999999999985
No 65
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=22.85 E-value=1.4e+02 Score=27.26 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=37.3
Q ss_pred EEEEEeCchhH---HHHHhhcCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCCC
Q 027819 139 HRVSVYPERLG---GVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGG 202 (218)
Q Consensus 139 ~~V~~wg~k~A---e~v~~~LkKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k~ 202 (218)
+.|++-.+... -...+.|..|+.|.|+|.+.... .. .| .+||.|. +|++|++..
T Consensus 46 iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~--~~-~~----~~el~~~---~i~vl~~~~ 102 (438)
T 3nem_A 46 VQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTP--KA-KL----GFEILPE---KIVVLNRAE 102 (438)
T ss_dssp EEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECT--TS-TT----SEEEEEE---EEEEEECBC
T ss_pred EEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCC--CC-CC----cEEEEEE---EEEEEecCC
Confidence 67776642211 12345799999999999997652 11 24 3789999 999998754
No 66
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1
Probab=22.34 E-value=76 Score=26.16 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=21.3
Q ss_pred EEEEeCchhHHHHHhhcCCCCEEEEEEEeEee
Q 027819 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQK 171 (218)
Q Consensus 140 ~V~~wg~k~Ae~v~~~LkKG~~V~VeG~L~t~ 171 (218)
.+.+-- .+.+--.+.|+.||.|++.|.|-+-
T Consensus 16 ~~~l~~-Plt~e~v~~L~vGD~V~LsG~i~ta 46 (192)
T 2isb_A 16 EYELRT-PLVKDQILKLKVGDVVYITGEIFTA 46 (192)
T ss_dssp EEEEES-SCCHHHHHHCCTTCEEEEEEEEEEC
T ss_pred EEEeCC-CCCHHHHhhCCCCCEEEEEEEEEEE
Confidence 344443 3444444469999999999999764
No 67
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=21.80 E-value=1.8e+02 Score=20.46 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=27.3
Q ss_pred hcCCCCEEEEEEEeEee----eeeCCCCCeEEEEEEEE-EEeCCcEEEe
Q 027819 155 HLVPGSTIYVEGNLEQK----VFNDPITGLVRRIREIA-IRRNGRLVFL 198 (218)
Q Consensus 155 ~LkKG~~V~VeG~L~t~----~~~d~~dG~~r~~~eI~-v~~~g~i~~L 198 (218)
-|++|+.|-|.|.+... .|..+ +|......++. .+..|.|.+.
T Consensus 7 dl~~g~~v~i~~~V~~~~~~r~~~~~-~G~~~~v~~~~l~DeTG~I~~t 54 (97)
T 3e0e_A 7 ELMPNLSGTINAEVVTAYPKKEFSRK-DGTKGQLKSLFLKDDTGSIRGT 54 (97)
T ss_dssp GCCTTEEEEEEEEEEEECCCEEEC-----CCEEEEEEEEEETTEEEEEE
T ss_pred HCCCCCcEEEEEEEEECCCceEEEcC-CCCeeEEEEEEEECCCCcEEEE
Confidence 38899999999988754 46666 78654555554 4457788776
Done!