BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027820
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 8/70 (11%)
Query: 117 RLRSNAGSSKEEVEQLQKEKMQL--------KDKEEKASKELKRLQEEISTLSVNLKKLK 168
RLR S+ EE++ L+++K+QL K+K+ + + LK ++ EI+ L+ + KL+
Sbjct: 391 RLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLR 450
Query: 169 SECEQKDKQL 178
+E E++ + L
Sbjct: 451 AEWEREREIL 460
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 8/66 (12%)
Query: 117 RLRSNAGSSKEEVEQLQKEKMQL--------KDKEEKASKELKRLQEEISTLSVNLKKLK 168
RLR S+ EE++ L+++K+QL K+K+ + + LK ++ EI+ L+ + KL+
Sbjct: 254 RLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLR 313
Query: 169 SECEQK 174
+E E++
Sbjct: 314 AEWERE 319
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 119 RSNAGSSKEEVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSECEQ 173
+ N ++E +QL K K+QL+ K ++ ++ L+ +E + L+ +KL+ EC +
Sbjct: 905 QDNLADAEERCDQLIKNKIQLEAKVKEMNERLEDEEEMNAELTAKKRKLEDECSE 959
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 119 RSNAGSSKEEVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSECEQ 173
+ N ++E +QL K K+QL+ K ++ ++ L+ +E + L+ +KL+ EC +
Sbjct: 905 QDNLADAEERCDQLIKNKIQLEAKVKEMNERLEDEEEMNAELTAKKRKLEDECSE 959
>pdb|3MQB|A Chain A, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
pdb|3MQB|B Chain B, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
pdb|3MQB|E Chain E, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
pdb|3MQB|F Chain F, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
Length = 121
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 87 THLLEASLI----GFTLFLGFIIDRMHHYLTKLIRLRSNAGSSKEEVEQLQKEKMQLKDK 142
THLL+ L GF H + + L + +++VE+L+ E L K
Sbjct: 27 THLLQQELTEAQKGFQDVEAQAATCNHTVMALMASLDAEKAQGQKKVEELEGEITTLNHK 86
Query: 143 EEKASKELKRLQEEISTLSVNL 164
+ AS E++RL+ E LSV +
Sbjct: 87 LQDASAEVERLRRENQVLSVRI 108
>pdb|2XG7|A Chain A, Crystal Structure Of Bst2-Tetherin Ectodomain Expressed In
Hek293t Cells
pdb|2XG7|C Chain C, Crystal Structure Of Bst2-Tetherin Ectodomain Expressed In
Hek293t Cells
Length = 103
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 87 THLLEASLI----GFTLFLGFIIDRMHHYLTKLIRLRSNAGSSKEEVEQLQKEKMQLKDK 142
THLL+ L GF H + + L + +++VE+L+ E L K
Sbjct: 17 THLLQQELTEAQKGFQDVEAQAATCNHTVMALMASLDAEKAQGQKKVEELEGEITTLNHK 76
Query: 143 EEKASKELKRLQEEISTLSVNL 164
+ AS E++RL+ E LSV +
Sbjct: 77 LQDASAEVERLRRENQVLSVRI 98
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 122 AGSSKEEVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSECEQ 173
G +EEVEQL+ +LK K+++ + L++ I+T L E EQ
Sbjct: 2009 TGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQ 2060
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 26.9 bits (58), Expect = 8.7, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 123 GSSKEEVEQLQKEKMQLKDKEEKASKELKRLQEEISTL---SVNLKKLKSECEQKDKQ 177
G + E V QLQ++ +KD++ + K++ + QEE+ L VNLK+ E Q+ K+
Sbjct: 409 GQALEVVIQLQEK--HVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKE 464
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,430,613
Number of Sequences: 62578
Number of extensions: 143457
Number of successful extensions: 1083
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 168
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)