Query 027820
Match_columns 218
No_of_seqs 127 out of 322
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 15:41:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1962 B-cell receptor-associ 100.0 1.9E-46 4.1E-51 316.7 23.0 201 1-215 1-211 (216)
2 PF05529 Bap31: B-cell recepto 100.0 2.2E-40 4.7E-45 277.6 19.7 178 2-200 5-192 (192)
3 COG5374 Uncharacterized conser 100.0 2.8E-30 6.1E-35 211.1 20.2 169 2-211 5-185 (192)
4 KOG1962 B-cell receptor-associ 98.8 1.8E-06 3.9E-11 73.8 19.3 167 33-212 32-201 (216)
5 COG4372 Uncharacterized protei 96.5 0.19 4.2E-06 46.7 15.5 115 93-214 53-168 (499)
6 PF02183 HALZ: Homeobox associ 96.4 0.0078 1.7E-07 39.3 4.7 34 182-215 4-37 (45)
7 KOG0995 Centromere-associated 96.4 0.87 1.9E-05 44.2 20.3 57 159-215 291-350 (581)
8 PF11559 ADIP: Afadin- and alp 95.7 0.41 8.8E-06 38.4 12.8 57 158-214 69-125 (151)
9 PRK09039 hypothetical protein; 95.6 1.8 3.9E-05 39.7 18.7 119 91-209 59-184 (343)
10 PRK11637 AmiB activator; Provi 95.3 1.2 2.6E-05 41.6 16.1 49 157-205 77-125 (428)
11 PRK11637 AmiB activator; Provi 95.1 1 2.2E-05 42.1 14.9 41 160-200 87-127 (428)
12 PF04156 IncA: IncA protein; 94.9 1.8 3.9E-05 35.7 23.1 56 159-214 134-189 (191)
13 PF08614 ATG16: Autophagy prot 94.8 0.35 7.6E-06 40.5 10.1 61 153-213 121-181 (194)
14 COG5185 HEC1 Protein involved 94.6 1.2 2.6E-05 42.6 13.8 53 162-214 330-385 (622)
15 PF00038 Filament: Intermediat 94.6 2.2 4.8E-05 37.8 15.2 18 104-121 9-26 (312)
16 PF00261 Tropomyosin: Tropomyo 94.4 2.8 6.2E-05 36.1 15.1 111 104-214 118-228 (237)
17 PF05529 Bap31: B-cell recepto 94.4 0.58 1.2E-05 39.0 10.4 32 180-211 158-189 (192)
18 COG1579 Zn-ribbon protein, pos 93.9 4.2 9E-05 35.6 14.9 38 177-214 90-127 (239)
19 PF04111 APG6: Autophagy prote 93.5 0.71 1.5E-05 41.8 9.9 32 163-194 65-96 (314)
20 PF14662 CCDC155: Coiled-coil 93.5 2.5 5.5E-05 35.7 12.3 8 111-118 6-13 (193)
21 PF06810 Phage_GP20: Phage min 93.4 0.98 2.1E-05 36.8 9.6 49 160-208 25-76 (155)
22 PF04111 APG6: Autophagy prote 93.2 2.5 5.5E-05 38.2 12.9 56 159-214 75-130 (314)
23 PF08317 Spc7: Spc7 kinetochor 92.8 6.1 0.00013 35.8 14.9 8 60-67 76-83 (325)
24 PF14662 CCDC155: Coiled-coil 91.7 7.2 0.00016 33.1 12.8 33 184-216 110-142 (193)
25 PF11932 DUF3450: Protein of u 91.5 8.6 0.00019 33.3 15.3 50 153-202 54-103 (251)
26 PF08614 ATG16: Autophagy prot 91.1 1.5 3.3E-05 36.7 8.4 45 158-202 119-163 (194)
27 COG4942 Membrane-bound metallo 89.6 6.3 0.00014 37.2 11.8 49 158-206 62-110 (420)
28 PF05266 DUF724: Protein of un 89.6 12 0.00025 31.6 16.9 14 55-68 50-63 (190)
29 PF07888 CALCOCO1: Calcium bin 89.5 9.9 0.00021 37.1 13.3 44 159-202 203-246 (546)
30 TIGR03185 DNA_S_dndD DNA sulfu 89.4 5.4 0.00012 39.4 11.9 49 158-206 424-472 (650)
31 KOG0933 Structural maintenance 89.4 11 0.00024 39.3 13.9 37 162-198 794-830 (1174)
32 TIGR02169 SMC_prok_A chromosom 89.2 13 0.00027 38.5 14.9 11 57-67 625-635 (1164)
33 PF00038 Filament: Intermediat 89.1 15 0.00034 32.4 15.3 18 104-121 16-33 (312)
34 PF10234 Cluap1: Clusterin-ass 88.8 16 0.00035 32.5 13.3 49 160-208 188-236 (267)
35 PF07407 Seadorna_VP6: Seadorn 88.7 1.9 4.1E-05 39.5 7.4 56 147-202 31-88 (420)
36 PF09738 DUF2051: Double stran 88.7 11 0.00023 34.2 12.2 82 114-209 85-166 (302)
37 PF12718 Tropomyosin_1: Tropom 88.6 11 0.00024 30.2 12.4 21 189-209 114-134 (143)
38 KOG0995 Centromere-associated 88.4 10 0.00022 37.1 12.4 22 151-172 304-325 (581)
39 PRK09039 hypothetical protein; 88.3 12 0.00027 34.2 12.6 50 156-205 138-187 (343)
40 PF07106 TBPIP: Tat binding pr 88.2 2.3 5E-05 34.7 7.1 56 156-211 80-137 (169)
41 KOG0963 Transcription factor/C 88.1 12 0.00026 37.0 12.8 48 162-210 310-357 (629)
42 PRK10884 SH3 domain-containing 87.7 13 0.00028 31.7 11.6 16 106-121 93-108 (206)
43 PRK12704 phosphodiesterase; Pr 87.5 29 0.00063 33.7 16.8 36 171-206 105-140 (520)
44 KOG1003 Actin filament-coating 87.5 17 0.00037 31.0 12.9 95 104-205 86-180 (205)
45 PF06005 DUF904: Protein of un 87.4 6.7 0.00015 28.0 8.2 15 156-170 19-33 (72)
46 PF09730 BicD: Microtubule-ass 87.0 8.4 0.00018 38.8 11.4 15 200-214 131-145 (717)
47 PF10473 CENP-F_leu_zip: Leuci 87.0 15 0.00031 29.7 14.4 16 106-121 24-39 (140)
48 PHA02562 46 endonuclease subun 86.9 16 0.00035 34.8 13.1 32 179-210 361-392 (562)
49 PF07888 CALCOCO1: Calcium bin 86.6 6.3 0.00014 38.4 10.1 11 94-104 101-111 (546)
50 smart00787 Spc7 Spc7 kinetocho 86.4 25 0.00055 31.9 14.2 6 62-67 73-78 (312)
51 TIGR03752 conj_TIGR03752 integ 86.4 11 0.00023 36.2 11.2 27 187-213 113-139 (472)
52 PF04136 Sec34: Sec34-like fam 86.1 6.8 0.00015 31.9 8.7 56 162-217 21-76 (157)
53 PF09403 FadA: Adhesion protei 86.0 15 0.00033 29.0 10.6 26 183-208 82-107 (126)
54 PF09726 Macoilin: Transmembra 86.0 15 0.00033 36.9 12.7 52 159-211 549-601 (697)
55 PF13851 GAS: Growth-arrest sp 85.9 20 0.00044 30.3 14.5 41 167-207 91-131 (201)
56 PF10481 CENP-F_N: Cenp-F N-te 85.9 26 0.00056 31.5 13.9 56 161-216 80-135 (307)
57 KOG0933 Structural maintenance 85.5 21 0.00046 37.3 13.4 37 164-200 817-853 (1174)
58 KOG0977 Nuclear envelope prote 85.5 37 0.00081 33.2 14.6 25 101-125 44-68 (546)
59 PRK12705 hypothetical protein; 85.4 37 0.00081 32.9 15.7 12 91-102 2-13 (508)
60 PF12777 MT: Microtubule-bindi 85.3 1.5 3.2E-05 40.1 4.9 15 43-57 116-130 (344)
61 PF10146 zf-C4H2: Zinc finger- 84.9 25 0.00055 30.5 13.9 51 162-212 53-103 (230)
62 PF06156 DUF972: Protein of un 84.5 6.8 0.00015 30.1 7.5 36 181-216 20-55 (107)
63 PRK15422 septal ring assembly 84.4 8.7 0.00019 28.0 7.5 53 155-214 18-70 (79)
64 KOG0977 Nuclear envelope prote 84.4 4.5 9.7E-05 39.4 7.9 62 155-216 317-382 (546)
65 KOG0996 Structural maintenance 84.2 21 0.00045 37.9 12.8 52 163-214 971-1022(1293)
66 KOG0250 DNA repair protein RAD 84.1 30 0.00064 36.4 13.8 26 178-203 403-428 (1074)
67 COG3879 Uncharacterized protei 84.0 21 0.00045 31.5 11.1 42 153-194 55-96 (247)
68 COG3883 Uncharacterized protei 83.4 8 0.00017 34.4 8.5 41 155-195 52-92 (265)
69 PF07061 Swi5: Swi5; InterPro 83.2 5.6 0.00012 29.1 6.3 22 190-211 32-53 (83)
70 PHA02562 46 endonuclease subun 83.1 24 0.00051 33.7 12.3 48 166-213 341-388 (562)
71 PF10211 Ax_dynein_light: Axon 83.0 27 0.00058 29.3 15.6 60 157-216 129-189 (189)
72 PF06810 Phage_GP20: Phage min 82.7 9.3 0.0002 31.1 8.1 45 163-207 21-68 (155)
73 COG1196 Smc Chromosome segrega 82.6 36 0.00077 36.1 14.3 11 192-202 462-472 (1163)
74 PF14235 DUF4337: Domain of un 82.3 8 0.00017 31.6 7.6 45 165-209 69-113 (157)
75 KOG0971 Microtubule-associated 82.2 24 0.00053 36.6 12.1 17 126-142 367-383 (1243)
76 PF11559 ADIP: Afadin- and alp 82.0 24 0.00052 28.0 14.6 15 104-118 36-50 (151)
77 PF13094 CENP-Q: CENP-Q, a CEN 81.7 13 0.00027 30.0 8.6 51 161-211 40-91 (160)
78 KOG0999 Microtubule-associated 81.7 7.6 0.00016 38.1 8.1 58 159-216 12-76 (772)
79 KOG0250 DNA repair protein RAD 81.7 42 0.00092 35.3 13.9 51 163-213 352-403 (1074)
80 KOG2264 Exostosin EXT1L [Signa 81.3 12 0.00027 36.9 9.4 48 160-207 105-152 (907)
81 PF02403 Seryl_tRNA_N: Seryl-t 81.0 14 0.0003 27.6 8.1 8 111-118 27-34 (108)
82 PF04156 IncA: IncA protein; 80.6 30 0.00065 28.3 17.2 53 162-214 130-182 (191)
83 KOG0976 Rho/Rac1-interacting s 80.4 53 0.0011 33.9 13.6 20 194-213 180-199 (1265)
84 KOG0971 Microtubule-associated 80.4 42 0.00091 35.0 13.1 31 164-194 327-357 (1243)
85 PF06103 DUF948: Bacterial pro 80.4 13 0.00027 27.0 7.4 19 186-204 43-61 (90)
86 COG4768 Uncharacterized protei 80.3 7.5 0.00016 31.1 6.5 33 182-214 37-69 (139)
87 COG2433 Uncharacterized conser 80.3 32 0.0007 34.1 11.9 10 103-112 375-384 (652)
88 PF13851 GAS: Growth-arrest sp 80.0 36 0.00077 28.8 14.9 13 160-172 67-79 (201)
89 KOG1003 Actin filament-coating 79.6 38 0.00082 28.9 11.8 53 162-214 144-196 (205)
90 PF10174 Cast: RIM-binding pro 78.8 46 0.001 34.0 13.1 28 168-195 377-404 (775)
91 PF12325 TMF_TATA_bd: TATA ele 78.7 13 0.00028 29.1 7.3 80 128-214 17-106 (120)
92 PF12329 TMF_DNA_bd: TATA elem 78.4 21 0.00046 25.4 9.0 23 182-204 46-68 (74)
93 COG4026 Uncharacterized protei 78.4 12 0.00026 32.7 7.6 49 158-213 152-200 (290)
94 KOG4673 Transcription factor T 78.3 36 0.00077 34.4 11.6 45 162-206 523-567 (961)
95 KOG4403 Cell surface glycoprot 78.3 62 0.0013 31.0 12.7 25 156-180 303-327 (575)
96 COG3883 Uncharacterized protei 78.2 49 0.0011 29.4 13.0 14 178-191 82-95 (265)
97 COG4372 Uncharacterized protei 78.0 63 0.0014 30.5 13.9 11 50-60 56-66 (499)
98 PF09789 DUF2353: Uncharacteri 77.8 25 0.00054 32.1 9.9 35 182-216 132-166 (319)
99 KOG0996 Structural maintenance 77.8 67 0.0014 34.3 13.9 53 162-214 542-594 (1293)
100 PF10146 zf-C4H2: Zinc finger- 77.8 14 0.0003 32.1 8.0 57 159-215 36-99 (230)
101 TIGR03319 YmdA_YtgF conserved 77.8 71 0.0015 31.0 16.8 30 178-207 99-128 (514)
102 PF05615 THOC7: Tho complex su 77.7 32 0.00069 27.0 12.9 10 198-207 116-125 (139)
103 PF06005 DUF904: Protein of un 77.0 24 0.00051 25.1 9.0 21 190-210 39-59 (72)
104 TIGR02680 conserved hypothetic 76.7 80 0.0017 34.3 14.8 47 157-203 278-324 (1353)
105 COG4026 Uncharacterized protei 76.5 23 0.0005 31.0 8.8 50 153-202 154-203 (290)
106 TIGR02894 DNA_bind_RsfA transc 76.5 22 0.00048 29.3 8.3 45 164-208 106-150 (161)
107 PF12329 TMF_DNA_bd: TATA elem 76.0 25 0.00055 25.0 9.8 11 129-139 14-24 (74)
108 TIGR02449 conserved hypothetic 76.0 24 0.00053 24.7 7.3 35 182-216 20-54 (65)
109 PF00170 bZIP_1: bZIP transcri 75.6 17 0.00038 24.6 6.6 22 183-204 40-61 (64)
110 KOG0963 Transcription factor/C 75.6 56 0.0012 32.4 12.1 31 184-214 311-341 (629)
111 PF10186 Atg14: UV radiation r 75.6 53 0.0011 28.4 14.7 25 187-211 116-140 (302)
112 PF09726 Macoilin: Transmembra 75.4 96 0.0021 31.3 14.2 36 160-195 543-578 (697)
113 PRK04778 septation ring format 75.4 45 0.00097 32.6 11.7 15 198-212 377-391 (569)
114 PF15188 CCDC-167: Coiled-coil 75.2 17 0.00036 26.9 6.6 28 181-208 41-68 (85)
115 PRK13169 DNA replication intia 74.8 21 0.00046 27.5 7.5 34 182-215 21-54 (110)
116 PRK09174 F0F1 ATP synthase sub 74.8 52 0.0011 27.9 15.0 36 78-113 45-83 (204)
117 PF11932 DUF3450: Protein of u 74.6 56 0.0012 28.2 14.7 49 161-209 48-96 (251)
118 PRK04863 mukB cell division pr 74.6 72 0.0016 35.1 13.8 36 171-206 378-413 (1486)
119 PRK15422 septal ring assembly 74.2 31 0.00067 25.1 8.9 10 202-211 51-60 (79)
120 KOG0999 Microtubule-associated 74.0 31 0.00067 34.0 9.8 30 182-211 176-208 (772)
121 PRK02224 chromosome segregatio 73.9 87 0.0019 31.8 13.7 40 170-209 259-298 (880)
122 PF07926 TPR_MLP1_2: TPR/MLP1/ 73.8 41 0.00089 26.3 14.7 58 159-216 70-131 (132)
123 PF04977 DivIC: Septum formati 73.8 10 0.00022 26.3 5.2 11 162-172 38-48 (80)
124 COG1579 Zn-ribbon protein, pos 73.7 62 0.0014 28.4 14.2 16 106-121 45-60 (239)
125 PF14523 Syntaxin_2: Syntaxin- 73.6 32 0.00069 25.1 8.1 29 186-214 67-95 (102)
126 PF00261 Tropomyosin: Tropomyo 73.6 58 0.0013 28.0 15.9 54 155-208 176-229 (237)
127 PRK02224 chromosome segregatio 73.4 69 0.0015 32.5 12.9 9 197-205 419-427 (880)
128 PF07407 Seadorna_VP6: Seadorn 73.3 19 0.00041 33.2 7.8 56 155-211 32-90 (420)
129 PF15619 Lebercilin: Ciliary p 73.2 56 0.0012 27.6 14.3 40 163-202 119-158 (194)
130 KOG0161 Myosin class II heavy 73.2 1E+02 0.0022 34.8 14.6 28 183-210 1111-1138(1930)
131 PF03962 Mnd1: Mnd1 family; I 73.0 23 0.0005 29.7 7.9 21 185-205 137-157 (188)
132 PF04849 HAP1_N: HAP1 N-termin 72.7 75 0.0016 28.9 13.2 57 158-214 209-265 (306)
133 PHA02047 phage lambda Rz1-like 72.7 17 0.00036 27.6 6.1 45 163-207 35-79 (101)
134 PF07926 TPR_MLP1_2: TPR/MLP1/ 72.6 37 0.00081 26.5 8.6 31 184-214 60-90 (132)
135 PF10392 COG5: Golgi transport 72.3 24 0.00052 27.6 7.5 29 177-205 66-94 (132)
136 PF10234 Cluap1: Clusterin-ass 71.7 29 0.00063 30.9 8.5 11 93-103 130-140 (267)
137 KOG4593 Mitotic checkpoint pro 71.2 98 0.0021 31.2 12.7 56 159-214 472-527 (716)
138 PF05278 PEARLI-4: Arabidopsis 71.1 77 0.0017 28.3 14.3 60 158-217 203-262 (269)
139 TIGR01010 BexC_CtrB_KpsE polys 71.0 54 0.0012 29.7 10.5 26 113-138 177-202 (362)
140 TIGR02894 DNA_bind_RsfA transc 70.9 29 0.00062 28.6 7.7 17 186-202 114-130 (161)
141 PRK14148 heat shock protein Gr 70.8 26 0.00055 29.8 7.7 38 156-193 41-78 (195)
142 PRK13729 conjugal transfer pil 70.4 22 0.00048 34.1 7.9 30 184-213 91-120 (475)
143 PF06008 Laminin_I: Laminin Do 70.3 73 0.0016 27.7 12.6 54 159-212 56-109 (264)
144 PF12072 DUF3552: Domain of un 70.0 65 0.0014 27.0 16.8 29 177-205 107-135 (201)
145 PF14197 Cep57_CLD_2: Centroso 70.0 36 0.00077 24.0 9.1 16 198-213 48-63 (69)
146 KOG1937 Uncharacterized conser 69.8 1.1E+02 0.0024 29.5 12.2 93 105-213 426-518 (521)
147 PF07200 Mod_r: Modifier of ru 69.7 38 0.00083 26.7 8.2 23 183-205 69-91 (150)
148 KOG0243 Kinesin-like protein [ 69.7 79 0.0017 33.4 12.1 26 21-46 337-363 (1041)
149 PF11544 Spc42p: Spindle pole 69.5 39 0.00084 24.5 7.2 12 163-174 20-31 (76)
150 PF00170 bZIP_1: bZIP transcri 68.8 33 0.00072 23.2 6.7 30 183-212 33-62 (64)
151 PF10174 Cast: RIM-binding pro 68.5 1E+02 0.0022 31.7 12.5 39 160-198 341-379 (775)
152 PF14584 DUF4446: Protein of u 67.9 55 0.0012 26.5 8.8 29 93-121 2-31 (151)
153 PRK14160 heat shock protein Gr 67.8 34 0.00073 29.4 7.9 22 188-209 73-94 (211)
154 PRK05431 seryl-tRNA synthetase 67.8 34 0.00074 32.2 8.7 15 188-202 78-92 (425)
155 KOG0946 ER-Golgi vesicle-tethe 67.8 68 0.0015 33.0 10.9 55 160-214 655-709 (970)
156 PF10805 DUF2730: Protein of u 67.4 52 0.0011 24.9 9.9 32 161-192 64-95 (106)
157 KOG4643 Uncharacterized coiled 67.4 1.7E+02 0.0038 31.0 14.2 46 162-207 488-533 (1195)
158 PF09730 BicD: Microtubule-ass 67.2 1.5E+02 0.0033 30.1 14.7 19 194-212 94-112 (717)
159 PF09744 Jnk-SapK_ap_N: JNK_SA 67.0 69 0.0015 26.2 10.7 52 160-211 94-145 (158)
160 PF10805 DUF2730: Protein of u 66.8 32 0.0007 26.1 6.9 45 160-204 54-100 (106)
161 KOG0994 Extracellular matrix g 66.5 1.8E+02 0.0039 31.6 13.8 54 160-213 1624-1677(1758)
162 PF13805 Pil1: Eisosome compon 66.5 97 0.0021 27.7 14.2 43 163-205 166-210 (271)
163 PF05483 SCP-1: Synaptonemal c 66.4 1.5E+02 0.0033 30.0 13.8 36 178-213 589-624 (786)
164 PF12777 MT: Microtubule-bindi 66.4 28 0.00062 31.6 7.7 13 91-103 191-203 (344)
165 KOG0976 Rho/Rac1-interacting s 66.3 1.6E+02 0.0036 30.6 13.2 32 183-214 365-396 (1265)
166 KOG0018 Structural maintenance 66.3 1.1E+02 0.0024 32.4 12.3 24 189-212 309-332 (1141)
167 PRK04863 mukB cell division pr 66.2 2E+02 0.0044 31.8 14.9 11 189-199 389-399 (1486)
168 TIGR03545 conserved hypothetic 66.0 82 0.0018 30.9 11.1 36 160-195 217-252 (555)
169 PF07200 Mod_r: Modifier of ru 65.9 50 0.0011 26.0 8.2 38 162-199 55-92 (150)
170 PF05701 WEMBL: Weak chloropla 65.9 1.3E+02 0.0029 29.1 13.6 52 163-214 282-333 (522)
171 PF12325 TMF_TATA_bd: TATA ele 65.9 62 0.0014 25.3 12.3 12 178-189 98-109 (120)
172 PF10211 Ax_dynein_light: Axon 65.8 79 0.0017 26.4 12.6 55 159-213 124-179 (189)
173 PF09728 Taxilin: Myosin-like 65.6 1E+02 0.0023 27.8 13.9 35 182-216 113-147 (309)
174 PF02183 HALZ: Homeobox associ 65.6 30 0.00064 22.4 5.5 33 182-214 11-43 (45)
175 PF05546 She9_MDM33: She9 / Md 65.6 22 0.00048 30.5 6.2 50 156-205 33-82 (207)
176 PRK14139 heat shock protein Gr 65.0 30 0.00065 29.1 6.9 36 159-194 36-71 (185)
177 smart00338 BRLZ basic region l 64.6 41 0.0009 22.8 6.6 19 184-202 41-59 (65)
178 PRK13922 rod shape-determining 64.2 98 0.0021 26.9 12.8 15 200-214 96-110 (276)
179 smart00338 BRLZ basic region l 63.9 34 0.00075 23.2 6.0 31 183-213 33-63 (65)
180 PF02403 Seryl_tRNA_N: Seryl-t 63.9 58 0.0013 24.2 9.3 19 103-121 26-44 (108)
181 PF03961 DUF342: Protein of un 63.6 33 0.00072 32.3 7.8 32 184-215 376-407 (451)
182 TIGR02209 ftsL_broad cell divi 63.1 19 0.00041 25.5 4.8 14 183-196 45-58 (85)
183 PF04420 CHD5: CHD5-like prote 63.1 20 0.00043 29.2 5.4 10 162-171 47-56 (161)
184 TIGR03752 conj_TIGR03752 integ 62.7 63 0.0014 31.1 9.3 15 107-121 60-74 (472)
185 PF13870 DUF4201: Domain of un 62.6 84 0.0018 25.6 12.9 53 162-214 105-162 (177)
186 PRK14161 heat shock protein Gr 62.1 35 0.00076 28.5 6.8 39 157-195 21-59 (178)
187 PRK13729 conjugal transfer pil 62.1 35 0.00076 32.8 7.5 35 159-193 87-121 (475)
188 PF13600 DUF4140: N-terminal d 61.7 16 0.00035 27.1 4.3 35 161-195 69-103 (104)
189 PHA03011 hypothetical protein; 61.7 13 0.00028 28.4 3.7 30 182-211 56-85 (120)
190 TIGR00606 rad50 rad50. This fa 61.2 1.7E+02 0.0036 31.7 13.2 45 162-206 888-932 (1311)
191 PF05325 DUF730: Protein of un 60.9 45 0.00099 25.3 6.5 43 161-203 77-119 (122)
192 TIGR03185 DNA_S_dndD DNA sulfu 60.8 1.8E+02 0.0039 28.8 13.4 36 160-195 433-468 (650)
193 PRK14153 heat shock protein Gr 60.6 25 0.00054 29.8 5.7 38 157-194 35-72 (194)
194 PRK14162 heat shock protein Gr 60.5 15 0.00032 31.2 4.3 39 156-194 40-78 (194)
195 PF07798 DUF1640: Protein of u 60.4 94 0.002 25.5 12.5 20 183-202 73-92 (177)
196 PF12761 End3: Actin cytoskele 60.4 1.1E+02 0.0023 26.1 9.7 34 177-210 161-194 (195)
197 KOG0249 LAR-interacting protei 60.2 1.6E+02 0.0036 30.0 11.9 38 179-216 219-256 (916)
198 PF06818 Fez1: Fez1; InterPro 60.1 54 0.0012 28.1 7.6 13 163-175 32-44 (202)
199 PF08826 DMPK_coil: DMPK coile 59.6 56 0.0012 22.6 7.0 29 167-195 30-58 (61)
200 KOG4052 Uncharacterized conser 59.4 13 0.00028 30.9 3.7 23 183-205 145-167 (190)
201 KOG0994 Extracellular matrix g 59.4 2E+02 0.0044 31.2 12.7 16 104-119 1533-1548(1758)
202 PRK14145 heat shock protein Gr 59.2 47 0.001 28.2 7.1 37 157-193 47-83 (196)
203 PF09744 Jnk-SapK_ap_N: JNK_SA 59.1 99 0.0021 25.3 13.2 14 105-118 28-41 (158)
204 PF13815 Dzip-like_N: Iguana/D 59.0 36 0.00079 26.1 6.0 12 180-191 105-116 (118)
205 PRK10636 putative ABC transpor 58.9 48 0.0011 32.7 8.3 58 157-214 565-629 (638)
206 KOG4001 Axonemal dynein light 58.9 1.2E+02 0.0025 26.3 9.4 23 194-216 232-254 (259)
207 TIGR02209 ftsL_broad cell divi 58.9 61 0.0013 22.8 9.4 23 89-111 3-25 (85)
208 PF05667 DUF812: Protein of un 58.7 1.7E+02 0.0037 29.0 11.9 52 163-214 427-478 (594)
209 PRK14143 heat shock protein Gr 58.5 49 0.0011 28.9 7.3 38 157-194 69-106 (238)
210 PF15070 GOLGA2L5: Putative go 58.4 2E+02 0.0044 28.7 13.4 50 163-212 203-259 (617)
211 PLN02678 seryl-tRNA synthetase 58.4 56 0.0012 31.2 8.3 26 184-209 79-104 (448)
212 COG4467 Regulator of replicati 58.1 76 0.0017 24.6 7.4 33 182-214 21-53 (114)
213 PF05667 DUF812: Protein of un 58.1 66 0.0014 31.9 8.9 49 162-210 328-376 (594)
214 PF09738 DUF2051: Double stran 58.1 78 0.0017 28.7 8.8 57 158-214 108-164 (302)
215 COG5185 HEC1 Protein involved 58.0 1.7E+02 0.0036 28.6 11.1 61 152-212 334-397 (622)
216 PRK14161 heat shock protein Gr 57.6 30 0.00065 28.9 5.7 30 183-212 26-55 (178)
217 PF11262 Tho2: Transcription f 57.5 39 0.00085 30.2 6.8 25 184-208 54-78 (298)
218 PF05911 DUF869: Plant protein 57.5 2.3E+02 0.005 29.1 13.0 37 177-213 128-164 (769)
219 KOG4674 Uncharacterized conser 57.4 3.1E+02 0.0066 31.0 14.3 56 159-214 1261-1324(1822)
220 PF10779 XhlA: Haemolysin XhlA 57.0 64 0.0014 22.5 7.1 39 164-202 8-46 (71)
221 PRK02119 hypothetical protein; 56.9 68 0.0015 22.7 7.8 36 160-195 14-49 (73)
222 TIGR00606 rad50 rad50. This fa 56.7 2.1E+02 0.0045 31.0 13.0 16 93-108 657-672 (1311)
223 cd07605 I-BAR_IMD Inverse (I)- 56.6 70 0.0015 27.6 7.9 14 52-65 41-54 (223)
224 COG5415 Predicted integral mem 56.6 77 0.0017 27.5 7.9 31 91-121 74-111 (251)
225 PF04102 SlyX: SlyX; InterPro 56.6 65 0.0014 22.4 7.3 29 167-195 16-44 (69)
226 PRK14153 heat shock protein Gr 56.6 54 0.0012 27.8 7.1 32 182-213 39-70 (194)
227 PF06156 DUF972: Protein of un 56.5 43 0.00093 25.6 5.9 23 153-175 34-56 (107)
228 PF03961 DUF342: Protein of un 56.3 90 0.0019 29.4 9.3 24 191-214 376-399 (451)
229 PF05701 WEMBL: Weak chloropla 56.1 2E+02 0.0043 27.9 13.3 42 159-200 341-382 (522)
230 PF10458 Val_tRNA-synt_C: Valy 55.8 64 0.0014 22.1 6.3 19 158-176 7-25 (66)
231 PRK00295 hypothetical protein; 55.7 68 0.0015 22.4 7.3 40 161-203 11-50 (68)
232 PF05377 FlaC_arch: Flagella a 55.1 64 0.0014 21.9 7.1 18 185-202 16-33 (55)
233 PHA00024 IX minor coat protein 54.9 15 0.00032 22.4 2.4 16 89-104 8-23 (33)
234 KOG4603 TBP-1 interacting prot 54.8 1E+02 0.0023 25.9 8.2 6 93-98 31-36 (201)
235 PF09755 DUF2046: Uncharacteri 54.6 1.7E+02 0.0037 26.7 11.9 12 202-213 190-201 (310)
236 PRK14140 heat shock protein Gr 54.2 41 0.00089 28.4 6.0 38 157-194 39-76 (191)
237 PRK15396 murein lipoprotein; P 54.2 81 0.0018 22.8 7.4 34 169-202 32-65 (78)
238 PF04977 DivIC: Septum formati 54.1 25 0.00055 24.3 4.1 14 182-195 37-50 (80)
239 PRK14155 heat shock protein Gr 54.0 43 0.00093 28.7 6.1 38 159-196 17-54 (208)
240 PF14282 FlxA: FlxA-like prote 53.9 94 0.002 23.5 8.3 52 156-207 20-75 (106)
241 CHL00132 psaF photosystem I su 53.9 8.9 0.00019 32.1 1.8 38 162-203 44-81 (185)
242 KOG2751 Beclin-like protein [S 53.8 2.1E+02 0.0045 27.4 11.3 15 99-113 132-146 (447)
243 PRK11519 tyrosine kinase; Prov 53.7 87 0.0019 31.4 9.2 30 181-210 368-397 (719)
244 PRK14158 heat shock protein Gr 53.4 45 0.00098 28.2 6.1 38 157-194 42-79 (194)
245 PF09763 Sec3_C: Exocyst compl 53.4 2.1E+02 0.0047 28.5 11.9 58 156-213 38-98 (701)
246 KOG0964 Structural maintenance 53.3 3.1E+02 0.0066 29.2 14.0 54 159-212 415-468 (1200)
247 PF04799 Fzo_mitofusin: fzo-li 53.3 93 0.002 25.9 7.8 49 154-206 119-167 (171)
248 TIGR00293 prefoldin, archaeal 53.0 58 0.0013 24.9 6.3 34 181-214 91-124 (126)
249 PF05266 DUF724: Protein of un 52.9 1.4E+02 0.003 25.1 13.9 18 154-171 130-147 (190)
250 PRK14151 heat shock protein Gr 52.8 79 0.0017 26.3 7.4 37 160-196 25-61 (176)
251 PRK00736 hypothetical protein; 52.6 77 0.0017 22.1 7.3 36 160-195 10-45 (68)
252 PLN02320 seryl-tRNA synthetase 52.4 75 0.0016 30.9 8.1 16 187-202 141-156 (502)
253 KOG0243 Kinesin-like protein [ 52.2 3.2E+02 0.0069 29.1 14.7 54 161-214 503-556 (1041)
254 KOG4438 Centromere-associated 51.9 2.2E+02 0.0048 27.2 12.9 23 184-206 188-210 (446)
255 PF12128 DUF3584: Protein of u 51.9 3.3E+02 0.0072 29.2 14.6 23 187-209 356-378 (1201)
256 KOG4809 Rab6 GTPase-interactin 51.8 2.5E+02 0.0055 27.8 11.4 26 184-209 418-443 (654)
257 PRK05560 DNA gyrase subunit A; 51.7 2.9E+02 0.0062 28.4 12.7 44 157-200 432-475 (805)
258 KOG1760 Molecular chaperone Pr 51.6 1.2E+02 0.0026 24.1 10.4 17 105-121 22-38 (131)
259 PF12718 Tropomyosin_1: Tropom 51.4 1.2E+02 0.0027 24.1 13.3 35 176-210 108-142 (143)
260 PRK14147 heat shock protein Gr 51.2 40 0.00088 27.9 5.4 35 160-194 23-57 (172)
261 PF10168 Nup88: Nuclear pore c 51.1 78 0.0017 32.0 8.4 28 184-211 587-614 (717)
262 PRK14163 heat shock protein Gr 51.1 66 0.0014 27.7 6.8 37 158-194 43-79 (214)
263 COG3074 Uncharacterized protei 51.0 89 0.0019 22.4 8.9 50 158-214 21-70 (79)
264 PRK09841 cryptic autophosphory 50.5 2.3E+02 0.005 28.5 11.6 32 181-212 368-399 (726)
265 PF10205 KLRAQ: Predicted coil 50.3 1.1E+02 0.0024 23.3 10.4 47 162-208 26-72 (102)
266 TIGR02449 conserved hypothetic 50.2 31 0.00066 24.2 3.8 31 185-215 2-32 (65)
267 PRK11281 hypothetical protein; 49.9 1.5E+02 0.0032 31.8 10.3 36 167-202 126-161 (1113)
268 PF07334 IFP_35_N: Interferon- 49.7 30 0.00066 25.0 3.8 21 154-174 6-26 (76)
269 TIGR00414 serS seryl-tRNA synt 49.7 1.4E+02 0.003 28.1 9.4 10 112-121 29-38 (418)
270 PF10224 DUF2205: Predicted co 49.6 99 0.0022 22.5 7.9 28 183-210 30-57 (80)
271 PRK09841 cryptic autophosphory 49.6 91 0.002 31.3 8.6 25 114-138 275-299 (726)
272 KOG2391 Vacuolar sorting prote 49.6 1.8E+02 0.0039 27.0 9.6 13 129-141 227-239 (365)
273 cd00890 Prefoldin Prefoldin is 49.4 68 0.0015 24.2 6.2 32 183-214 94-125 (129)
274 PF04420 CHD5: CHD5-like prote 49.3 69 0.0015 26.0 6.4 19 160-178 71-89 (161)
275 COG1382 GimC Prefoldin, chaper 49.2 1.3E+02 0.0028 23.6 12.1 42 166-210 70-111 (119)
276 TIGR01843 type_I_hlyD type I s 49.2 2E+02 0.0044 25.9 12.5 89 127-215 123-221 (423)
277 PF06295 DUF1043: Protein of u 49.2 1.2E+02 0.0026 23.7 7.6 48 161-208 31-79 (128)
278 TIGR03545 conserved hypothetic 49.0 1.7E+02 0.0038 28.7 10.1 29 180-208 216-244 (555)
279 PF04880 NUDE_C: NUDE protein, 48.7 28 0.00061 28.8 4.1 39 129-171 9-47 (166)
280 PF09789 DUF2353: Uncharacteri 48.5 2E+02 0.0042 26.4 9.8 64 151-214 129-206 (319)
281 KOG0982 Centrosomal protein Nu 48.5 2.6E+02 0.0056 26.9 11.6 55 153-207 309-363 (502)
282 PRK11519 tyrosine kinase; Prov 48.5 2.7E+02 0.0059 28.0 11.7 32 107-138 267-299 (719)
283 PRK14154 heat shock protein Gr 48.4 1E+02 0.0022 26.5 7.5 37 159-195 56-92 (208)
284 cd07653 F-BAR_CIP4-like The F- 48.3 1.7E+02 0.0036 24.9 9.1 27 183-209 119-145 (251)
285 PRK14143 heat shock protein Gr 48.2 52 0.0011 28.8 5.8 29 185-213 76-104 (238)
286 KOG0804 Cytoplasmic Zn-finger 48.2 2.6E+02 0.0057 26.9 15.1 10 163-172 390-399 (493)
287 PRK04406 hypothetical protein; 48.1 99 0.0022 22.1 8.1 36 160-195 16-51 (75)
288 KOG2391 Vacuolar sorting prote 48.0 1.4E+02 0.0031 27.6 8.8 13 188-200 258-270 (365)
289 PRK14148 heat shock protein Gr 47.7 57 0.0012 27.7 5.8 30 184-213 48-77 (195)
290 KOG3990 Uncharacterized conser 47.5 57 0.0012 29.0 5.9 34 157-190 227-260 (305)
291 PF04728 LPP: Lipoprotein leuc 47.4 89 0.0019 21.3 7.4 31 160-190 8-38 (56)
292 PRK14160 heat shock protein Gr 47.3 1.8E+02 0.0039 25.0 8.9 36 157-192 63-98 (211)
293 PF05278 PEARLI-4: Arabidopsis 47.3 1.4E+02 0.003 26.7 8.4 57 160-216 198-254 (269)
294 PF12709 Kinetocho_Slk19: Cent 47.2 1.2E+02 0.0025 22.6 8.3 25 190-214 49-73 (87)
295 TIGR03319 YmdA_YtgF conserved 47.1 2.8E+02 0.0061 26.9 16.7 38 169-206 97-134 (514)
296 TIGR01005 eps_transp_fam exopo 47.0 3.1E+02 0.0067 27.5 12.4 31 181-211 374-404 (754)
297 PRK12704 phosphodiesterase; Pr 47.0 2.8E+02 0.0061 26.9 17.4 40 172-211 99-138 (520)
298 TIGR01061 parC_Gpos DNA topois 46.9 3.3E+02 0.0072 27.7 12.5 100 93-200 371-472 (738)
299 cd07646 I-BAR_IMD_IRSp53 Inver 46.8 1.5E+02 0.0033 25.8 8.4 56 161-216 113-174 (232)
300 cd07658 F-BAR_NOSTRIN The F-BA 46.3 1.8E+02 0.0039 25.0 9.0 47 167-213 100-146 (239)
301 PF06667 PspB: Phage shock pro 46.1 29 0.00064 25.0 3.3 23 48-70 7-29 (75)
302 PF15079 DUF4546: Domain of un 46.1 84 0.0018 26.3 6.4 34 165-202 50-84 (205)
303 PF10498 IFT57: Intra-flagella 46.1 2.5E+02 0.0054 26.0 11.7 37 177-213 281-317 (359)
304 PRK00106 hypothetical protein; 46.0 3E+02 0.0065 27.0 16.5 27 178-204 127-153 (535)
305 KOG0978 E3 ubiquitin ligase in 46.0 3.4E+02 0.0074 27.6 13.6 14 201-214 605-618 (698)
306 PLN02678 seryl-tRNA synthetase 45.9 1.7E+02 0.0036 28.0 9.3 17 105-121 32-48 (448)
307 PRK13428 F0F1 ATP synthase sub 45.8 2.7E+02 0.0058 26.4 16.4 26 91-116 5-30 (445)
308 PRK02119 hypothetical protein; 45.5 1.1E+02 0.0023 21.7 7.7 29 183-211 23-51 (73)
309 cd07676 F-BAR_FBP17 The F-BAR 45.5 1.9E+02 0.0041 25.3 9.0 37 178-214 116-152 (253)
310 KOG0804 Cytoplasmic Zn-finger 45.4 2.9E+02 0.0063 26.6 10.9 17 179-195 431-447 (493)
311 PRK14147 heat shock protein Gr 45.0 29 0.00062 28.8 3.6 21 190-210 32-52 (172)
312 smart00340 HALZ homeobox assoc 44.9 67 0.0014 20.7 4.4 30 182-211 4-33 (44)
313 KOG4674 Uncharacterized conser 44.8 5.2E+02 0.011 29.4 16.4 30 163-192 725-754 (1822)
314 PRK05771 V-type ATP synthase s 44.5 1E+02 0.0023 30.4 8.0 46 162-207 215-261 (646)
315 PRK14158 heat shock protein Gr 44.2 70 0.0015 27.1 5.9 23 189-211 53-75 (194)
316 PF11853 DUF3373: Protein of u 44.2 21 0.00045 34.5 3.0 13 163-175 32-44 (489)
317 COG3167 PilO Tfp pilus assembl 44.0 91 0.002 26.6 6.4 22 183-204 73-94 (211)
318 PF05600 DUF773: Protein of un 43.7 1.7E+02 0.0037 28.3 9.2 36 164-199 462-498 (507)
319 PRK00846 hypothetical protein; 43.6 1.2E+02 0.0027 21.9 7.5 6 164-169 15-20 (77)
320 PRK00888 ftsB cell division pr 43.5 66 0.0014 24.4 5.1 16 182-197 47-62 (105)
321 COG0576 GrpE Molecular chapero 43.5 1.1E+02 0.0023 25.8 6.9 32 162-193 43-74 (193)
322 PRK06569 F0F1 ATP synthase sub 43.4 1.8E+02 0.0039 23.7 17.2 20 182-201 109-128 (155)
323 PRK15178 Vi polysaccharide exp 43.4 3E+02 0.0065 26.3 11.1 40 155-194 286-332 (434)
324 PRK11281 hypothetical protein; 43.0 1.6E+02 0.0034 31.6 9.3 55 160-214 126-180 (1113)
325 PF10779 XhlA: Haemolysin XhlA 42.9 1.1E+02 0.0024 21.2 7.0 32 164-195 15-46 (71)
326 PRK00295 hypothetical protein; 42.9 1.1E+02 0.0025 21.2 7.2 31 183-213 19-49 (68)
327 PF09325 Vps5: Vps5 C terminal 42.8 77 0.0017 26.5 6.0 61 154-217 141-201 (236)
328 PRK04325 hypothetical protein; 42.7 1.2E+02 0.0026 21.5 7.6 36 160-195 14-49 (74)
329 KOG1029 Endocytic adaptor prot 42.7 3E+02 0.0064 28.7 10.6 55 160-214 449-503 (1118)
330 PF07136 DUF1385: Protein of u 42.6 87 0.0019 27.4 6.3 58 12-70 52-113 (236)
331 PF13870 DUF4201: Domain of un 42.4 1.8E+02 0.004 23.5 17.4 46 94-139 8-54 (177)
332 PRK14154 heat shock protein Gr 42.3 62 0.0013 27.8 5.3 10 164-173 54-63 (208)
333 PF14197 Cep57_CLD_2: Centroso 42.2 1.2E+02 0.0026 21.3 8.2 35 157-191 28-62 (69)
334 PF12958 DUF3847: Protein of u 42.2 71 0.0015 23.6 4.9 30 166-195 5-34 (86)
335 PRK04778 septation ring format 42.2 3.4E+02 0.0073 26.5 17.3 53 162-214 105-157 (569)
336 PRK00373 V-type ATP synthase s 42.2 1.2E+02 0.0026 25.4 7.1 31 183-213 25-55 (204)
337 TIGR03007 pepcterm_ChnLen poly 42.0 3E+02 0.0065 25.9 13.0 114 103-216 201-357 (498)
338 cd00584 Prefoldin_alpha Prefol 41.9 1.1E+02 0.0023 23.5 6.2 33 182-214 93-125 (129)
339 PF10473 CENP-F_leu_zip: Leuci 41.8 1.8E+02 0.004 23.3 14.8 40 161-200 51-90 (140)
340 PF05911 DUF869: Plant protein 41.8 4.1E+02 0.0089 27.3 15.2 19 93-111 538-556 (769)
341 PRK14144 heat shock protein Gr 41.7 1.2E+02 0.0027 25.7 7.0 35 159-193 49-83 (199)
342 PRK14141 heat shock protein Gr 41.7 1E+02 0.0023 26.4 6.6 35 160-194 36-70 (209)
343 PF01025 GrpE: GrpE; InterPro 41.6 59 0.0013 25.9 4.9 28 163-190 19-46 (165)
344 PF04350 PilO: Pilus assembly 41.6 32 0.00069 26.5 3.2 17 184-200 24-40 (144)
345 PRK00106 hypothetical protein; 41.6 3.5E+02 0.0076 26.5 14.6 40 171-210 113-152 (535)
346 PF04949 Transcrip_act: Transc 41.5 2E+02 0.0043 23.6 12.1 26 160-185 89-114 (159)
347 PRK14162 heat shock protein Gr 41.4 76 0.0016 26.9 5.7 24 188-211 51-74 (194)
348 PF12761 End3: Actin cytoskele 41.3 1E+02 0.0022 26.3 6.3 40 159-198 100-143 (195)
349 PF15290 Syntaphilin: Golgi-lo 41.2 1.4E+02 0.0029 27.1 7.3 12 161-172 88-99 (305)
350 KOG0946 ER-Golgi vesicle-tethe 41.2 4.4E+02 0.0095 27.5 11.9 11 182-192 705-715 (970)
351 COG1422 Predicted membrane pro 41.2 1.5E+02 0.0033 25.3 7.4 11 106-116 54-64 (201)
352 COG4768 Uncharacterized protei 41.0 1.4E+02 0.003 24.0 6.7 27 181-207 43-69 (139)
353 PRK13454 F0F1 ATP synthase sub 40.6 2.1E+02 0.0045 23.6 16.9 32 81-113 26-61 (181)
354 KOG2010 Double stranded RNA bi 40.4 3.1E+02 0.0066 25.5 9.7 11 129-139 128-138 (405)
355 COG4942 Membrane-bound metallo 40.3 3.3E+02 0.0073 25.9 14.9 44 165-208 199-242 (420)
356 PF05622 HOOK: HOOK protein; 40.2 9.4 0.0002 38.2 0.0 34 179-212 387-420 (713)
357 PF15619 Lebercilin: Ciliary p 39.9 2.3E+02 0.005 23.9 15.2 25 169-193 89-113 (194)
358 KOG2264 Exostosin EXT1L [Signa 39.9 1.4E+02 0.0031 29.8 7.8 42 153-194 105-146 (907)
359 TIGR01005 eps_transp_fam exopo 39.9 4E+02 0.0087 26.7 14.9 17 196-212 375-391 (754)
360 PRK04406 hypothetical protein; 39.8 1.4E+02 0.003 21.3 8.0 33 182-214 24-56 (75)
361 PRK02793 phi X174 lysis protei 39.4 1.4E+02 0.0029 21.1 7.6 35 161-195 14-48 (72)
362 PRK05431 seryl-tRNA synthetase 39.2 2.1E+02 0.0045 27.0 8.8 17 105-121 27-43 (425)
363 cd00890 Prefoldin Prefoldin is 39.2 1E+02 0.0022 23.2 5.7 16 187-202 105-120 (129)
364 PF01920 Prefoldin_2: Prefoldi 39.2 1.4E+02 0.003 21.6 6.3 23 182-204 75-97 (106)
365 KOG4643 Uncharacterized coiled 38.9 5.2E+02 0.011 27.7 13.8 36 179-214 484-519 (1195)
366 PF04483 DUF565: Protein of un 38.7 1.3E+02 0.0027 20.6 5.7 48 3-62 9-57 (60)
367 PRK14156 heat shock protein Gr 38.7 1.4E+02 0.003 24.9 6.8 35 160-194 32-66 (177)
368 PF03962 Mnd1: Mnd1 family; I 38.6 2.3E+02 0.005 23.6 12.3 10 111-120 74-83 (188)
369 PRK14146 heat shock protein Gr 38.6 83 0.0018 27.1 5.5 34 160-193 59-92 (215)
370 PRK03947 prefoldin subunit alp 38.5 1.8E+02 0.0039 22.6 7.2 27 184-210 109-135 (140)
371 PF05483 SCP-1: Synaptonemal c 38.5 4.5E+02 0.0097 26.8 13.7 53 163-215 500-552 (786)
372 PF15397 DUF4618: Domain of un 38.2 2.9E+02 0.0062 24.5 11.6 78 126-213 62-150 (258)
373 PF07139 DUF1387: Protein of u 38.0 3.1E+02 0.0068 24.9 11.5 87 96-195 190-285 (302)
374 KOG1292 Xanthine/uracil transp 38.0 17 0.00037 35.0 1.4 18 91-108 408-425 (510)
375 KOG0979 Structural maintenance 37.9 5.3E+02 0.011 27.5 13.0 46 170-215 312-357 (1072)
376 TIGR00998 8a0101 efflux pump m 37.9 1.5E+02 0.0032 26.1 7.4 18 184-201 116-133 (334)
377 PF08776 VASP_tetra: VASP tetr 37.8 1.1E+02 0.0023 19.5 5.7 21 164-184 5-26 (40)
378 TIGR00414 serS seryl-tRNA synt 37.7 3E+02 0.0064 25.9 9.6 18 104-121 28-45 (418)
379 PF08112 ATP-synt_E_2: ATP syn 37.7 1.2E+02 0.0026 20.5 4.9 30 162-204 11-40 (56)
380 PF01486 K-box: K-box region; 37.6 1.6E+02 0.0036 21.6 7.3 51 162-214 49-99 (100)
381 PRK04325 hypothetical protein; 37.2 1.5E+02 0.0033 21.0 7.6 44 163-213 10-53 (74)
382 KOG2751 Beclin-like protein [S 37.2 3.8E+02 0.0083 25.7 11.0 22 187-208 215-236 (447)
383 COG3074 Uncharacterized protei 37.1 1.6E+02 0.0034 21.1 9.4 37 156-199 26-62 (79)
384 PHA01750 hypothetical protein 37.0 1.5E+02 0.0033 21.0 7.1 10 163-172 43-52 (75)
385 cd07675 F-BAR_FNBP1L The F-BAR 37.0 2.9E+02 0.0063 24.3 8.8 36 177-212 114-149 (252)
386 COG2841 Uncharacterized protei 37.0 31 0.00067 24.6 2.2 25 190-214 10-34 (72)
387 PF04859 DUF641: Plant protein 36.9 1.7E+02 0.0038 23.2 6.7 28 171-198 96-123 (131)
388 PRK10698 phage shock protein P 36.8 2.7E+02 0.0058 23.8 14.7 8 105-112 4-11 (222)
389 PF07334 IFP_35_N: Interferon- 36.6 69 0.0015 23.2 4.0 26 159-184 4-29 (76)
390 PF02388 FemAB: FemAB family; 36.6 2E+02 0.0043 26.8 8.2 40 159-202 253-292 (406)
391 PF01166 TSC22: TSC-22/dip/bun 36.6 77 0.0017 21.8 4.0 27 185-211 16-42 (59)
392 cd07652 F-BAR_Rgd1 The F-BAR ( 36.4 2.8E+02 0.006 23.8 12.2 33 180-212 115-147 (234)
393 PF02388 FemAB: FemAB family; 36.2 1.6E+02 0.0036 27.3 7.6 48 160-211 247-294 (406)
394 PRK09413 IS2 repressor TnpA; R 36.1 92 0.002 23.8 5.0 16 177-192 86-101 (121)
395 KOG0980 Actin-binding protein 36.1 5.4E+02 0.012 27.1 14.3 31 179-209 413-443 (980)
396 KOG4403 Cell surface glycoprot 35.9 3.1E+02 0.0066 26.5 9.1 8 97-104 217-224 (575)
397 PRK02793 phi X174 lysis protei 35.8 1.6E+02 0.0034 20.8 7.7 45 162-213 8-52 (72)
398 PRK13169 DNA replication intia 35.7 1.7E+02 0.0036 22.6 6.3 22 153-174 34-55 (110)
399 PRK03947 prefoldin subunit alp 35.5 2.1E+02 0.0046 22.2 7.4 39 166-204 98-136 (140)
400 PF09340 NuA4: Histone acetylt 35.3 89 0.0019 22.6 4.5 21 181-201 14-34 (80)
401 PRK09458 pspB phage shock prot 35.0 31 0.00066 24.9 2.0 20 51-70 10-29 (75)
402 PF01102 Glycophorin_A: Glycop 35.0 36 0.00077 26.8 2.5 16 93-108 76-91 (122)
403 PF15294 Leu_zip: Leucine zipp 34.9 1.5E+02 0.0033 26.6 6.7 45 153-197 130-174 (278)
404 smart00503 SynN Syntaxin N-ter 34.8 1.8E+02 0.004 21.2 13.7 29 185-213 84-112 (117)
405 PF15066 CAGE1: Cancer-associa 34.6 4.4E+02 0.0095 25.6 12.7 46 163-208 391-436 (527)
406 TIGR00998 8a0101 efflux pump m 34.2 2.6E+02 0.0056 24.6 8.3 13 188-200 151-163 (334)
407 PF15290 Syntaphilin: Golgi-lo 34.1 3.6E+02 0.0078 24.4 10.9 46 171-216 119-168 (305)
408 PRK00736 hypothetical protein; 34.0 1.6E+02 0.0035 20.4 7.4 31 183-213 19-49 (68)
409 PF04136 Sec34: Sec34-like fam 34.0 2.5E+02 0.0055 22.6 9.2 52 163-214 15-66 (157)
410 PF13118 DUF3972: Protein of u 33.9 1.4E+02 0.003 23.7 5.7 34 160-193 90-123 (126)
411 KOG3647 Predicted coiled-coil 33.9 3.6E+02 0.0078 24.4 9.6 7 182-188 153-159 (338)
412 PF15112 DUF4559: Domain of un 33.8 3.7E+02 0.008 24.5 9.2 51 46-102 119-177 (307)
413 PRK14157 heat shock protein Gr 33.8 1.1E+02 0.0023 26.8 5.4 36 160-195 82-117 (227)
414 PRK10636 putative ABC transpor 33.6 2.4E+02 0.0052 27.9 8.6 28 180-207 602-629 (638)
415 KOG2991 Splicing regulator [RN 33.6 3.6E+02 0.0077 24.3 9.5 34 172-205 267-300 (330)
416 COG0172 SerS Seryl-tRNA synthe 33.6 2.9E+02 0.0063 26.3 8.8 24 184-207 76-99 (429)
417 KOG4571 Activating transcripti 33.5 3.3E+02 0.0071 24.7 8.6 19 184-202 263-281 (294)
418 KOG0483 Transcription factor H 33.3 77 0.0017 27.0 4.4 34 181-214 110-143 (198)
419 PLN02320 seryl-tRNA synthetase 33.3 2.8E+02 0.0062 27.0 8.8 14 105-118 92-105 (502)
420 PRK14156 heat shock protein Gr 33.2 94 0.002 25.9 4.9 32 183-214 34-65 (177)
421 TIGR00219 mreC rod shape-deter 32.9 1.2E+02 0.0027 26.9 6.0 14 160-173 71-84 (283)
422 PF04859 DUF641: Plant protein 32.9 2E+02 0.0044 22.8 6.6 47 162-208 80-126 (131)
423 PRK14144 heat shock protein Gr 32.9 1.1E+02 0.0025 26.0 5.4 31 183-213 52-82 (199)
424 PRK14750 kdpF potassium-transp 32.8 71 0.0015 18.8 2.9 21 93-113 5-25 (29)
425 COG0497 RecN ATPase involved i 32.8 5E+02 0.011 25.7 11.6 47 163-213 326-372 (557)
426 PF11471 Sugarporin_N: Maltopo 32.6 1E+02 0.0022 21.1 4.2 28 160-187 30-57 (60)
427 KOG4196 bZIP transcription fac 32.6 1.7E+02 0.0036 23.4 5.9 23 75-97 20-44 (135)
428 KOG3433 Protein involved in me 32.4 3.1E+02 0.0068 23.3 7.9 9 187-195 127-135 (203)
429 KOG4005 Transcription factor X 32.4 3.1E+02 0.0066 24.4 8.0 37 166-202 94-130 (292)
430 PRK09973 putative outer membra 32.3 2.1E+02 0.0045 21.1 7.0 20 182-201 44-63 (85)
431 KOG0981 DNA topoisomerase I [R 32.2 1.2E+02 0.0025 30.3 5.9 56 158-213 639-699 (759)
432 PF14817 HAUS5: HAUS augmin-li 31.7 4.4E+02 0.0094 26.5 10.0 42 153-194 84-125 (632)
433 KOG4673 Transcription factor T 31.5 2.7E+02 0.0059 28.5 8.4 53 160-212 709-761 (961)
434 COG5283 Phage-related tail pro 31.5 7.1E+02 0.015 27.1 12.8 47 159-205 61-107 (1213)
435 PF04582 Reo_sigmaC: Reovirus 31.4 46 0.00099 30.5 2.9 51 162-212 84-134 (326)
436 COG1792 MreC Cell shape-determ 31.2 1.5E+02 0.0033 26.4 6.2 10 52-61 20-29 (284)
437 PF10625 UspB: Universal stres 31.1 83 0.0018 24.1 3.8 27 94-120 2-28 (107)
438 PF09766 FimP: Fms-interacting 31.1 2.4E+02 0.0052 25.9 7.7 38 162-199 115-152 (355)
439 KOG3990 Uncharacterized conser 30.9 1.4E+02 0.0029 26.7 5.6 44 163-206 226-271 (305)
440 TIGR01554 major_cap_HK97 phage 30.8 3.7E+02 0.008 24.4 8.9 7 162-168 41-47 (378)
441 PRK14149 heat shock protein Gr 30.7 1.2E+02 0.0027 25.6 5.3 35 160-194 41-75 (191)
442 PF07028 DUF1319: Protein of u 30.6 2.5E+02 0.0053 22.3 6.5 20 159-178 64-83 (126)
443 PF03915 AIP3: Actin interacti 30.5 3E+02 0.0065 26.2 8.3 19 158-176 216-234 (424)
444 KOG4360 Uncharacterized coiled 30.4 5.4E+02 0.012 25.4 12.3 102 108-212 182-283 (596)
445 PF06428 Sec2p: GDP/GTP exchan 30.4 30 0.00065 26.2 1.4 8 163-170 23-30 (100)
446 PF07111 HCR: Alpha helical co 29.9 6.2E+02 0.013 25.9 12.3 35 176-210 190-224 (739)
447 PF11221 Med21: Subunit 21 of 29.9 1.6E+02 0.0034 23.4 5.6 34 162-195 104-137 (144)
448 PRK14145 heat shock protein Gr 29.7 1.5E+02 0.0032 25.2 5.6 27 186-212 55-81 (196)
449 PF10498 IFT57: Intra-flagella 29.7 4.6E+02 0.0099 24.3 12.7 38 177-214 274-311 (359)
450 PRK14159 heat shock protein Gr 29.6 1.9E+02 0.0042 24.0 6.2 35 161-195 29-63 (176)
451 PRK14163 heat shock protein Gr 29.6 1.4E+02 0.003 25.8 5.4 9 164-172 42-50 (214)
452 PF07412 Geminin: Geminin; In 29.4 1.2E+02 0.0027 25.9 5.0 10 194-203 160-169 (200)
453 PF14817 HAUS5: HAUS augmin-li 29.4 3.1E+02 0.0067 27.5 8.5 30 180-209 97-126 (632)
454 KOG0978 E3 ubiquitin ligase in 29.3 6.3E+02 0.014 25.8 12.6 48 163-210 574-621 (698)
455 PF02996 Prefoldin: Prefoldin 29.0 1.7E+02 0.0038 21.7 5.5 7 167-173 82-88 (120)
456 PF04728 LPP: Lipoprotein leuc 28.7 1.9E+02 0.0042 19.6 8.1 26 164-189 5-30 (56)
457 PRK14140 heat shock protein Gr 28.7 1.7E+02 0.0036 24.8 5.7 16 194-209 55-70 (191)
458 TIGR02338 gimC_beta prefoldin, 28.7 2.5E+02 0.0055 21.0 6.4 42 154-195 66-107 (110)
459 TIGR02976 phageshock_pspB phag 28.5 84 0.0018 22.5 3.3 22 49-70 8-29 (75)
460 COG3352 FlaC Putative archaeal 28.3 3.4E+02 0.0073 22.3 8.3 61 154-214 71-132 (157)
461 TIGR01069 mutS2 MutS2 family p 28.3 6.6E+02 0.014 25.7 11.4 13 187-199 576-588 (771)
462 PF07061 Swi5: Swi5; InterPro 28.3 2.4E+02 0.0051 20.5 7.4 31 184-214 33-63 (83)
463 PF07716 bZIP_2: Basic region 28.1 1.7E+02 0.0038 19.0 5.6 23 187-209 29-51 (54)
464 PRK14159 heat shock protein Gr 28.0 1.2E+02 0.0027 25.2 4.8 35 181-215 28-62 (176)
465 PF12273 RCR: Chitin synthesis 28.0 74 0.0016 24.7 3.3 26 41-66 1-26 (130)
466 PRK04960 universal stress prot 27.8 1E+02 0.0022 23.7 3.8 27 94-120 2-28 (111)
467 PRK15396 murein lipoprotein; P 27.7 2.4E+02 0.0052 20.4 6.8 53 156-208 26-78 (78)
468 PF14235 DUF4337: Domain of un 27.6 3.4E+02 0.0073 22.1 10.9 108 90-201 1-112 (157)
469 PRK05729 valS valyl-tRNA synth 27.5 1.9E+02 0.0042 29.7 7.0 58 154-211 810-874 (874)
470 PRK14127 cell division protein 27.5 89 0.0019 24.1 3.5 66 147-213 36-101 (109)
471 PF07254 DUF1434: Protein of u 27.5 2.1E+02 0.0045 22.7 5.7 51 5-70 16-66 (132)
472 KOG4571 Activating transcripti 27.5 1.9E+02 0.0041 26.1 6.1 40 165-204 244-283 (294)
473 KOG3156 Uncharacterized membra 27.2 3E+02 0.0066 23.8 7.0 57 162-218 80-137 (220)
474 TIGR01242 26Sp45 26S proteasom 27.2 1.5E+02 0.0033 26.8 5.7 40 157-196 1-40 (364)
475 PF10828 DUF2570: Protein of u 27.2 2.8E+02 0.006 20.9 11.1 82 93-185 4-86 (110)
476 PF10504 DUF2452: Protein of u 27.1 3.6E+02 0.0078 22.2 7.5 49 163-211 31-80 (159)
477 COG1730 GIM5 Predicted prefold 26.8 2.7E+02 0.0059 22.5 6.4 49 150-198 89-137 (145)
478 cd00179 SynN Syntaxin N-termin 26.7 3E+02 0.0065 21.2 13.7 102 104-212 4-110 (151)
479 PF06631 DUF1154: Protein of u 26.6 1.9E+02 0.0042 18.9 5.1 35 176-214 12-46 (47)
480 KOG1103 Predicted coiled-coil 26.3 5.5E+02 0.012 24.2 10.5 109 98-210 185-293 (561)
481 PRK13979 DNA topoisomerase IV 26.2 8E+02 0.017 26.0 12.6 112 80-199 367-490 (957)
482 PRK11147 ABC transporter ATPas 26.2 3.2E+02 0.0069 26.9 8.1 59 151-210 565-629 (635)
483 PF03980 Nnf1: Nnf1 ; InterPr 26.2 1.4E+02 0.0031 22.2 4.5 30 185-214 75-104 (109)
484 PF14932 HAUS-augmin3: HAUS au 26.1 4.2E+02 0.0091 23.0 8.0 55 160-214 66-120 (256)
485 PLN02943 aminoacyl-tRNA ligase 26.0 1.6E+02 0.0034 30.9 6.1 65 154-218 888-952 (958)
486 PF04102 SlyX: SlyX; InterPro 25.9 2.3E+02 0.005 19.6 6.9 44 154-197 3-46 (69)
487 PRK14141 heat shock protein Gr 25.9 1.5E+02 0.0032 25.4 5.0 36 180-215 35-70 (209)
488 TIGR01063 gyrA DNA gyrase, A s 25.8 1.8E+02 0.0039 29.9 6.4 46 154-199 426-471 (800)
489 PRK11546 zraP zinc resistance 25.7 3.6E+02 0.0078 21.8 8.3 67 114-187 48-114 (143)
490 PTZ00454 26S protease regulato 25.7 2.4E+02 0.0051 26.4 6.7 49 170-218 16-64 (398)
491 PF14282 FlxA: FlxA-like prote 25.6 2.9E+02 0.0064 20.7 7.4 53 161-213 18-74 (106)
492 PF07195 FliD_C: Flagellar hoo 25.5 2.6E+02 0.0056 23.8 6.5 49 167-218 191-239 (239)
493 PF02646 RmuC: RmuC family; I 25.5 4.7E+02 0.01 23.3 8.4 62 150-214 1-65 (304)
494 PF10125 NADHdeh_related: NADH 25.4 1.6E+02 0.0034 25.3 4.9 58 47-104 25-101 (219)
495 PF06818 Fez1: Fez1; InterPro 25.4 4.3E+02 0.0094 22.6 11.6 96 114-216 11-106 (202)
496 KOG0018 Structural maintenance 25.2 4.8E+02 0.01 27.9 9.2 83 129-218 809-891 (1141)
497 PF06717 DUF1202: Protein of u 25.2 2.3E+02 0.005 25.6 6.1 45 157-201 133-177 (308)
498 PRK13553 fumarate reductase cy 25.2 4.9E+02 0.011 23.1 11.4 93 4-105 34-140 (258)
499 PRK11677 hypothetical protein; 25.1 3.5E+02 0.0077 21.5 7.6 50 162-214 29-78 (134)
500 PF04568 IATP: Mitochondrial A 25.1 1.6E+02 0.0035 22.3 4.5 29 158-186 68-100 (100)
No 1
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=100.00 E-value=1.9e-46 Score=316.70 Aligned_cols=201 Identities=35% Similarity=0.484 Sum_probs=163.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhcccchhH---HHHHHHHHHhhhCCcchhHHHHHHHHHHHHHhhHHHHHHhhhcc--c---
Q 027820 1 MIQLLFLVLFAEGALAFLLLVKIGPLR---ELVIKSLDQLKMGKGPATVKTIAGTMFVILLSSLMSIVKIQNKG--A--- 72 (218)
Q Consensus 1 ~~~lvf~~L~~Em~~~~lL~lP~~P~r---k~~~~~~~~~~~~~~~~~~~~~~~~l~llF~Dsv~~~~k~~~~~--~--- 72 (218)
|+++||++||+||+++++||+|+ |.| +++...+......++.+++.+++++++++|+|||+|+++|.++. +
T Consensus 1 ~~tlvf~iL~~Eial~~iL~Lpi-p~r~~~~~~~~~~~~~~~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~ 79 (216)
T KOG1962|consen 1 YWTLVFTILYAEIALFLILLLPI-PPRRRRKIFKDRLKSGLAPQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANP 79 (216)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC
Confidence 78999999999999999999999 984 33333333333434577899999999999999999999998762 1
Q ss_pred --cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhHhhhHhhhhhHHH
Q 027820 73 --KLGTMSPMDQVLWRTHLLEASLIGFTLFLGFIIDRMHHYLTKLIRLRSNAGSSKEEVEQLQKEKMQLKDKEEKASKEL 150 (218)
Q Consensus 73 --~~~~~~~~~~~~~~~rrfn~YLtGF~LFL~lvI~R~~~li~~l~~l~~~~~a~~~~~kq~~~~~~~~~~~~~~~~~~~ 150 (218)
.+....|.++.+++.+| |.|||||+|||||||+|+|+++++++.++++ +++++++..+++.....+
T Consensus 80 ~~~~~a~~~~~~~l~raqr-n~YisGf~LFL~lvI~R~~~ll~~l~~l~~~--------~~~~~~~~~lk~~~~~~~--- 147 (216)
T KOG1962|consen 80 TDQPLARTHLLEALFRAQR-NLYISGFVLFLSLVIRRLHTLLRELATLRAN--------EKAMKENEALKKQLENSS--- 147 (216)
T ss_pred ccchHHHHHHHHHHHHHHh-hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhhhccc---
Confidence 11233455677888888 9999999999999999999999999999986 556666555554322111
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 151 KRLQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 151 ~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
...+++.+..++.++|+++++++.+++++++.+.++|+||++++++|||||.+||++||++++.
T Consensus 148 -~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 148 -KLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred -chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 1445667788899999999999999999999999999999999999999999999999999873
No 2
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=100.00 E-value=2.2e-40 Score=277.56 Aligned_cols=178 Identities=28% Similarity=0.418 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHH-HHhhhCCcchhHHHHHHHHHHHHHhhHHHHHHhhhccccC--CCC
Q 027820 2 IQLLFLVLFAEGALAFLLLVKIG-PLRELVIKSL-DQLKMGKGPATVKTIAGTMFVILLSSLMSIVKIQNKGAKL--GTM 77 (218)
Q Consensus 2 ~~lvf~~L~~Em~~~~lL~lP~~-P~rk~~~~~~-~~~~~~~~~~~~~~~~~~l~llF~Dsv~~~~k~~~~~~~~--~~~ 77 (218)
+++||++|++||+++++||+|+. |.|+.+.++. ..+..+++++++++++++++++|+|||++|+||+++.... ++.
T Consensus 5 ~~lvf~~L~~Ei~~~~lL~lPlp~~~R~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lf~ds~~~~~k~~~~~~~~~~~~~ 84 (192)
T PF05529_consen 5 WSLVFGLLYAEIAVLLLLVLPLPSPIRRKIFKFLDKSFFSGKFKTVFKILLAILLLLFLDSIRRMYKYSSEYEEAKDDHP 84 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCC
Confidence 58999999999999999999993 3476665544 4566767899999999999999999999999998764321 111
Q ss_pred C---hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhHhhhHhhhhhHHHH
Q 027820 78 S---PMD---QVLWRTHLLEASLIGFTLFLGFIIDRMHHYLTKLIRLRSNAGSSKEEVEQLQKEKMQLKDKEEKASKELK 151 (218)
Q Consensus 78 ~---~~~---~~~~~~rrfn~YLtGF~LFL~lvI~R~~~li~~l~~l~~~~~a~~~~~kq~~~~~~~~~~~~~~~~~~~~ 151 (218)
+ ..+ ...+++|| |+|||||+|||++||+|++++++++..++++.+++ .+|.++..+..++
T Consensus 85 ~~~~~~~~~~~~~fraQR-N~YIsGf~LfL~l~I~r~~~li~~l~~~~~~~~~~---~kq~~~~~~~~~~---------- 150 (192)
T PF05529_consen 85 NPDRTEDQVLAKKFRAQR-NMYISGFALFLSLVIRRVHSLIKELIKLEEKLEAL---KKQAESASEAAEK---------- 150 (192)
T ss_pred CccchhHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhhhh----------
Confidence 1 122 34677888 99999999999999999999999999999984444 2222221111100
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 152 RLQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYD 200 (218)
Q Consensus 152 ~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYd 200 (218)
...++.++++.|++++++++++++.|+++||||++|+++|||
T Consensus 151 -------~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 151 -------LLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred -------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 022344455555555666666678999999999999999998
No 3
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=2.8e-30 Score=211.07 Aligned_cols=169 Identities=18% Similarity=0.297 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHH-hhhCCcchhHHHHHHHHHHHHHhhHHHHHHhhhccc--cC--
Q 027820 2 IQLLFLVLFAEGALAFLLLVKIGPL--RELVIKSLDQ-LKMGKGPATVKTIAGTMFVILLSSLMSIVKIQNKGA--KL-- 74 (218)
Q Consensus 2 ~~lvf~~L~~Em~~~~lL~lP~~P~--rk~~~~~~~~-~~~~~~~~~~~~~~~~l~llF~Dsv~~~~k~~~~~~--~~-- 74 (218)
+++||.+|++||++|++|++|+ |. ||.+...+.. ...++.+++.+|+++++++||+|||+|+++++.+.. .+
T Consensus 5 ~~lvfslL~vEm~~f~il~LPl-p~r~RR~l~~~~~~~~~~~~~k~il~i~~~~IllLFiDS~~Rv~rv~~~~nl~~a~~ 83 (192)
T COG5374 5 YTLVFSLLVVEMVMFFILVLPL-PKRLRRSLMKLYSTSKVYRGFKHILKITFIFILLLFIDSWKRVYRVSKEANLYSASI 83 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHccC-cHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhccccc
Confidence 6899999999999999999999 98 6777555554 445445999999999999999999999999987632 11
Q ss_pred --CCCChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhHhhhHhhhhhHH
Q 027820 75 --GTMSPMDQVL---WRTHLLEASLIGFTLFLGFIIDRMHHYLTKLIRLRSNAGSSKEEVEQLQKEKMQLKDKEEKASKE 149 (218)
Q Consensus 75 --~~~~~~~~~~---~~~rrfn~YLtGF~LFL~lvI~R~~~li~~l~~l~~~~~a~~~~~kq~~~~~~~~~~~~~~~~~~ 149 (218)
+...|.+ .+ +-+|| |+|||||+|||++|+.|+++++.++....+. + +++
T Consensus 84 n~~~~~~i~-~las~fy~qr-nmyl~g~~L~l~~~v~~~~~~v~~ml~~~~~--------~-------------~~k--- 137 (192)
T COG5374 84 NNYAVTRIA-VLASRFYAQR-NMYLSGSALFLSIVVMRVMSIVEEMLEENAK--------K-------------GGK--- 137 (192)
T ss_pred cccchhHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------c-------------ccc---
Confidence 1222221 22 23356 9999999999999999999999999887543 1 111
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 150 LKRLQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 150 ~~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
.++++.+....++++.+++.+++.|+|+-+++.++||...+-.+..+.
T Consensus 138 --------------~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~~ne~~~~v~~ 185 (192)
T COG5374 138 --------------IDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQK 185 (192)
T ss_pred --------------hhhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 122223333333455567889999999999988888777655554443
No 4
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=98.77 E-value=1.8e-06 Score=73.78 Aligned_cols=167 Identities=29% Similarity=0.328 Sum_probs=122.6
Q ss_pred HHHHhhhCCcchhHHHHHHHHHHHHHhhHHHHHHhhhccccCCC-CChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 027820 33 SLDQLKMGKGPATVKTIAGTMFVILLSSLMSIVKIQNKGAKLGT-MSPMDQVLWRTHLL-EASLIGFTLFLGFIIDRMHH 110 (218)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~llF~Dsv~~~~k~~~~~~~~~~-~~~~~~~~~~~rrf-n~YLtGF~LFL~lvI~R~~~ 110 (218)
+.+.+..+.++.+.+++.++++++++--+-.+++++......|. .+|+++..++++.- .+|.+++-+|++=+.==+.-
T Consensus 32 ~~~~~~~~~~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~~~~~~a~~~~~~~l~raqrn~YisGf~LFL~l 111 (216)
T KOG1962|consen 32 FKDRLKSGLAPQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANPTDQPLARTHLLEALFRAQRNLYISGFVLFLSL 111 (216)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCccchHHHHHHHHHHHHHHhhhHHhHHHHHHHH
Confidence 34457787789999999999999999999999999998666664 45777776666543 44888999998855444556
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHhHhhhHhhhhhHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 111 YLTKLIRLRSNAGSSKEEVEQLQKEKMQLKDKEEKASKELKRLQEEI-STLSVNLKKLKSECEQKDKQLETADAHVIALQ 189 (218)
Q Consensus 111 li~~l~~l~~~~~a~~~~~kq~~~~~~~~~~~~~~~~~~~~~~~~e~-~~l~~e~~kLk~el~~~~kel~~~~~d~~aLK 189 (218)
+|.++..+-.. +-.+++. +.+.+. .+.-....++ .++.+|..+++.+++.+++++++.+.+.+..+
T Consensus 112 vI~R~~~ll~~-------l~~l~~~-~~~~~~-----~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~ 178 (216)
T KOG1962|consen 112 VIRRLHTLLRE-------LATLRAN-EKAMKE-----NEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQ 178 (216)
T ss_pred HHHHHHHHHHH-------HHHHHhh-HHHHHH-----HHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 66777777443 3334432 122111 1111111122 22577889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027820 190 KQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 190 KQae~l~~EYdrL~~e~~~l~~~ 212 (218)
++.+.+.+--+++.+||+.+-++
T Consensus 179 ~~~~al~Kq~e~~~~EydrLlee 201 (216)
T KOG1962|consen 179 KKVDALKKQSEGLQDEYDRLLEE 201 (216)
T ss_pred HHHHHHHHHHHHcccHHHHHHHH
Confidence 99999999999999999998754
No 5
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.45 E-value=0.19 Score=46.72 Aligned_cols=115 Identities=22% Similarity=0.283 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccHHHHHHHHHHHhHhhhHhhhhhHHHHHHHHHhhhhHHHHHHHHHHH
Q 027820 93 SLIGFTLFLGFIIDR-MHHYLTKLIRLRSNAGSSKEEVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSEC 171 (218)
Q Consensus 93 YLtGF~LFL~lvI~R-~~~li~~l~~l~~~~~a~~~~~kq~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~kLk~el 171 (218)
-||.-+|=..|+++| +..=|.++.....+..+...++++++.+.+..+.. ..+...|.++-..|-+..+.++
T Consensus 53 liSA~tLailf~~~~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~e-------r~~~~~El~~~r~e~~~v~~~~ 125 (499)
T COG4372 53 LISAATLAILFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETE-------REAARSELQKARQEREAVRQEL 125 (499)
T ss_pred hhhHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 566677877777777 55556666666665333333355444443333221 1112233444555666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 172 EQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 172 ~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
...++++.++..+.--+.||+.+++.+.-.|.+++.++..+.+
T Consensus 126 ~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~q 168 (499)
T COG4372 126 AAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQ 168 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888888888888888877777777766655544
No 6
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.41 E-value=0.0078 Score=39.25 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 182 DAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
+.|.++||.+.+.|..+||+|..|+++|+.++..
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999988764
No 7
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.41 E-value=0.87 Score=44.23 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcc
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADL---LLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l---~~EYdrL~~e~~~l~~~l~~ 215 (218)
...++++.|+.|+++++.|.++.+.+.+.||+|.++. -.++.|..-|.++++..+..
T Consensus 291 ~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~ 350 (581)
T KOG0995|consen 291 HMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNK 350 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999998875 35667777777777666553
No 8
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.73 E-value=0.41 Score=38.36 Aligned_cols=57 Identities=28% Similarity=0.356 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 158 STLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 158 ~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
..+...+++|+.+++.++.++..++.+..+++++...+..---...+|.++++..++
T Consensus 69 ~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 69 ERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555554443
No 9
>PRK09039 hypothetical protein; Validated
Probab=95.61 E-value=1.8 Score=39.66 Aligned_cols=119 Identities=13% Similarity=0.141 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhHh-------hhHhhhhhHHHHHHHHHhhhhHHH
Q 027820 91 EASLIGFTLFLGFIIDRMHHYLTKLIRLRSNAGSSKEEVEQLQKEKMQL-------KDKEEKASKELKRLQEEISTLSVN 163 (218)
Q Consensus 91 n~YLtGF~LFL~lvI~R~~~li~~l~~l~~~~~a~~~~~kq~~~~~~~~-------~~~~~~~~~~~~~~~~e~~~l~~e 163 (218)
+.-|..-+=-|.+=-.|.-.+=.++..++++.+++++....+++..... +.....-.++-.....+.+....+
T Consensus 59 ~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~ 138 (343)
T PRK09039 59 NSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQ 138 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4455554545555555566666666666665333322222222211100 000000011111111222223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 164 LKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNL 209 (218)
Q Consensus 164 ~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l 209 (218)
+..|+.+|+.+++++...+..+++.+.|-...+..++.|..+.+++
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555554444443
No 10
>PRK11637 AmiB activator; Provisional
Probab=95.29 E-value=1.2 Score=41.64 Aligned_cols=49 Identities=8% Similarity=0.060 Sum_probs=23.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 157 ISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLED 205 (218)
Q Consensus 157 ~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e 205 (218)
+..+..+++.+..++...+.+++..+.+++.++++.+.++++.+...+.
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555554455555555555555555555544444333
No 11
>PRK11637 AmiB activator; Provisional
Probab=95.06 E-value=1 Score=42.14 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYD 200 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYd 200 (218)
...++..++.+++..+.++...+.++..++++.+.....+.
T Consensus 87 ~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 87 ASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444433333333344444444444444333333
No 12
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.92 E-value=1.8 Score=35.70 Aligned_cols=56 Identities=27% Similarity=0.334 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
..+...+++.+++....+++...+..++.++.+.+.+..+|+++.+..+..+.-++
T Consensus 134 ~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 189 (191)
T PF04156_consen 134 SLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELLE 189 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555554555555667777777777777777777666555554443
No 13
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.83 E-value=0.35 Score=40.54 Aligned_cols=61 Identities=30% Similarity=0.345 Sum_probs=47.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 153 LQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 153 ~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
...++..+..++..++.+++++++.+.....++.+|+-|..-+.....+|.+||..|=+..
T Consensus 121 l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 121 LEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777788888888888888888888888888888888888888888888875544
No 14
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.61 E-value=1.2 Score=42.58 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADL---LLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l---~~EYdrL~~e~~~l~~~l~ 214 (218)
+.+++|+.+++.++++++..+.+++.|++|.++. ..+|.....|.++|...|+
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~ 385 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELD 385 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999998753 2344444455555544444
No 15
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.61 E-value=2.2 Score=37.80 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 027820 104 IIDRMHHYLTKLIRLRSN 121 (218)
Q Consensus 104 vI~R~~~li~~l~~l~~~ 121 (218)
.-+|+.++|.....++.+
T Consensus 9 LNdRla~YIekVr~LE~~ 26 (312)
T PF00038_consen 9 LNDRLASYIEKVRFLEQE 26 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445667777666666665
No 16
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.44 E-value=2.8 Score=36.14 Aligned_cols=111 Identities=14% Similarity=0.231 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhHhhhHhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 104 IIDRMHHYLTKLIRLRSNAGSSKEEVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSECEQKDKQLETADA 183 (218)
Q Consensus 104 vI~R~~~li~~l~~l~~~~~a~~~~~kq~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~ 183 (218)
+-+|+..+=..|...+..++.++...+.+..+...+......-.........-.......+..|...++..+.....++.
T Consensus 118 ~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~ 197 (237)
T PF00261_consen 118 VERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAER 197 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666555555545555554333322210000000001111123445577777777777777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.+..|.++.+.+..+.+.-.++|..++..++
T Consensus 198 ~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 198 RVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888788888777775
No 17
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=94.42 E-value=0.58 Score=39.00 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 180 TADAHVIALQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 180 ~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
+.+.+++.+|++.+..++|++.|.+..+.++.
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777777777776666655543
No 18
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.86 E-value=4.2 Score=35.62 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 177 QLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 177 el~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
+.+..+.++++.|.+...+..|-.+|.++..+++++..
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~ 127 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE 127 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666667777777777777777777666665543
No 19
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.54 E-value=0.71 Score=41.81 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSAD 194 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~ 194 (218)
++++|+.+-++.+++++..+.+.+.++.+-+.
T Consensus 65 eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~ 96 (314)
T PF04111_consen 65 ELEELEKEREELDQELEELEEELEELDEEEEE 96 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 20
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.46 E-value=2.5 Score=35.75 Aligned_cols=8 Identities=25% Similarity=0.231 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 027820 111 YLTKLIRL 118 (218)
Q Consensus 111 li~~l~~l 118 (218)
++..+..+
T Consensus 6 L~~~v~dL 13 (193)
T PF14662_consen 6 LLSCVEDL 13 (193)
T ss_pred HHHHHHHH
Confidence 33333333
No 21
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=93.39 E-value=0.98 Score=36.84 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADA---HVIALQKQSADLLLEYDRLLEDNQN 208 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~---d~~aLKKQae~l~~EYdrL~~e~~~ 208 (218)
...+.+.++.+|+..+++++..+. |.+.|++|++.++.+|+.-.++|+.
T Consensus 25 ~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~ 76 (155)
T PF06810_consen 25 VKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEA 76 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777776666555 9999999999999999977777764
No 22
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.18 E-value=2.5 Score=38.25 Aligned_cols=56 Identities=23% Similarity=0.195 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.+.+++.+++.+.+..+++-.....+.-.++.+.-.+.+|.+.+...++..+++++
T Consensus 75 ~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 75 ELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444444455555555555555555555555555555554
No 23
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.82 E-value=6.1 Score=35.77 Aligned_cols=8 Identities=25% Similarity=0.119 Sum_probs=4.3
Q ss_pred hHHHHHHh
Q 027820 60 SLMSIVKI 67 (218)
Q Consensus 60 sv~~~~k~ 67 (218)
+.+++.+|
T Consensus 76 ~c~EL~~~ 83 (325)
T PF08317_consen 76 SCRELKKY 83 (325)
T ss_pred HHHHHHHH
Confidence 55555554
No 24
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.74 E-value=7.2 Score=33.06 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
.-..+.-..+++.+-|..|..+...|+.++-.|
T Consensus 110 en~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~ 142 (193)
T PF14662_consen 110 ENGKLLAERDGLKKRSKELATEKATLQRQLCEF 142 (193)
T ss_pred HHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 333334444444444555555555666665433
No 25
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.52 E-value=8.6 Score=33.32 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=26.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 153 LQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 153 ~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL 202 (218)
...++..+..+++.|+...+..++.+.+.+.+++.|+.|.++...-..++
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555555555555555555444333
No 26
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.13 E-value=1.5 Score=36.68 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 158 STLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 158 ~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL 202 (218)
..+..++..|+.++..++.+++...+.++.++-....++-+|+-+
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~ 163 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNML 163 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333333333333333333333333333
No 27
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.62 E-value=6.3 Score=37.23 Aligned_cols=49 Identities=29% Similarity=0.304 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 158 STLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDN 206 (218)
Q Consensus 158 ~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~ 206 (218)
..+..+++++++++...+.++.....+++.++++.+.+...-..|..++
T Consensus 62 ~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 62 AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666665555544
No 28
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=89.56 E-value=12 Score=31.62 Aligned_cols=14 Identities=21% Similarity=0.226 Sum_probs=8.0
Q ss_pred HHHHhhHHHHHHhh
Q 027820 55 VILLSSLMSIVKIQ 68 (218)
Q Consensus 55 llF~Dsv~~~~k~~ 68 (218)
+-|+|.+-.+.+.+
T Consensus 50 ~~f~~l~e~v~~l~ 63 (190)
T PF05266_consen 50 VTFANLAEKVKKLQ 63 (190)
T ss_pred HHHHHHHHHHHHcc
Confidence 44666666665443
No 29
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=89.47 E-value=9.9 Score=37.11 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL 202 (218)
.+..|.+.|+.+.++....+...+.++.+|+.+.....++-+++
T Consensus 203 ~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~l 246 (546)
T PF07888_consen 203 ELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKL 246 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555556666666666666664443333333
No 30
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.41 E-value=5.4 Score=39.38 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 158 STLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDN 206 (218)
Q Consensus 158 ~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~ 206 (218)
..+.++.++++.++.+.+.++...+.+++.+++|.+.+.++++++.+..
T Consensus 424 ~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 472 (650)
T TIGR03185 424 AQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQK 472 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666555666666666666666666666666554443
No 31
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.38 E-value=11 Score=39.31 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLE 198 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~E 198 (218)
++++.++..+++-.+++++.+.+.+.|+-..|.+++|
T Consensus 794 keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e 830 (1174)
T KOG0933|consen 794 KEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKE 830 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333333
No 32
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=89.24 E-value=13 Score=38.48 Aligned_cols=11 Identities=0% Similarity=0.271 Sum_probs=5.7
Q ss_pred HHhhHHHHHHh
Q 027820 57 LLSSLMSIVKI 67 (218)
Q Consensus 57 F~Dsv~~~~k~ 67 (218)
++|++....++
T Consensus 625 v~~~l~~a~~~ 635 (1164)
T TIGR02169 625 VVEDIEAARRL 635 (1164)
T ss_pred EEcCHHHHHHH
Confidence 55555554443
No 33
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.06 E-value=15 Score=32.37 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 027820 104 IIDRMHHYLTKLIRLRSN 121 (218)
Q Consensus 104 vI~R~~~li~~l~~l~~~ 121 (218)
.|.||..|=.+-..++.+
T Consensus 16 YIekVr~LE~~N~~Le~~ 33 (312)
T PF00038_consen 16 YIEKVRFLEQENKRLESE 33 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHH
Confidence 456666666555555544
No 34
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=88.82 E-value=16 Score=32.47 Aligned_cols=49 Identities=27% Similarity=0.424 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQN 208 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~ 208 (218)
+..+-..|...|++++.|+++.++-+++|++===-.-.||++|-.|.++
T Consensus 188 l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 188 LASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 3444455555666555555556666666555444445566666665554
No 35
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=88.69 E-value=1.9 Score=39.45 Aligned_cols=56 Identities=16% Similarity=0.110 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 027820 147 SKELKRLQEEISTLSVNLKKLKSECEQKDKQLET--ADAHVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 147 ~~~~~~~~~e~~~l~~e~~kLk~el~~~~kel~~--~~~d~~aLKKQae~l~~EYdrL 202 (218)
.++...++.||.++++|+++|+.+++.++.+..+ ...+.+++.-|++.+.+--|+-
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~ 88 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKM 88 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444567778888888999999988888777665 3556666777777777777664
No 36
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=88.67 E-value=11 Score=34.19 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=51.4
Q ss_pred HHHHHHhcccccHHHHHHHHHHHhHhhhHhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 114 KLIRLRSNAGSSKEEVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSA 193 (218)
Q Consensus 114 ~l~~l~~~~~a~~~~~kq~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae 193 (218)
+|..++++ ++.++=.+..++..+ ....=++..++.++++++..+-.+.++.+.+..+++.+|....
T Consensus 85 ~l~evEek-------yrkAMv~naQLDNek-------~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d 150 (302)
T PF09738_consen 85 SLAEVEEK-------YRKAMVSNAQLDNEK-------SALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHD 150 (302)
T ss_pred HHHHHHHH-------HHHHHHHHhhhchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556665 666666555554322 2233345556677777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 027820 194 DLLLEYDRLLEDNQNL 209 (218)
Q Consensus 194 ~l~~EYdrL~~e~~~l 209 (218)
.+..+.|.|.++....
T Consensus 151 ~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 151 SLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777666655433
No 37
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.56 E-value=11 Score=30.17 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027820 189 QKQSADLLLEYDRLLEDNQNL 209 (218)
Q Consensus 189 KKQae~l~~EYdrL~~e~~~l 209 (218)
-.+...+..+-|..-..++.+
T Consensus 114 eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 114 ERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333333333333
No 38
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.35 E-value=10 Score=37.10 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=12.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHH
Q 027820 151 KRLQEEISTLSVNLKKLKSECE 172 (218)
Q Consensus 151 ~~~~~e~~~l~~e~~kLk~el~ 172 (218)
....+|++.+..+++.|+..++
T Consensus 304 e~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 304 EEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666554
No 39
>PRK09039 hypothetical protein; Validated
Probab=88.25 E-value=12 Score=34.21 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=37.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 156 EISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLED 205 (218)
Q Consensus 156 e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e 205 (218)
.+..++.+++.|+.++...+.++..++......+.|.+.+..+-+....+
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888887777777777777777788888887777776543
No 40
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=88.22 E-value=2.3 Score=34.67 Aligned_cols=56 Identities=25% Similarity=0.324 Sum_probs=24.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 156 EISTLSVNLKKLKSECEQKDKQLETADA--HVIALQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 156 e~~~l~~e~~kLk~el~~~~kel~~~~~--d~~aLKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
++..+..++..|+.+++.++.++..... ..+-|..+.+.+..|-..+.+....+++
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444443322 1233445555555555555444444443
No 41
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=88.13 E-value=12 Score=37.00 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
.+.++.+.+|...+++++++...++.|+++.++. +.||.+..|.+-|+
T Consensus 310 ~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 310 EEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHH
Confidence 4445666777888888888888888999988887 77888888877665
No 42
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.67 E-value=13 Score=31.71 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhc
Q 027820 106 DRMHHYLTKLIRLRSN 121 (218)
Q Consensus 106 ~R~~~li~~l~~l~~~ 121 (218)
.|+-.+=.++..++++
T Consensus 93 ~rlp~le~el~~l~~~ 108 (206)
T PRK10884 93 TRVPDLENQVKTLTDK 108 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444555555554
No 43
>PRK12704 phosphodiesterase; Provisional
Probab=87.51 E-value=29 Score=33.68 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 171 CEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDN 206 (218)
Q Consensus 171 l~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~ 206 (218)
|+++++++...+.+++..+++.+...++|+++.++.
T Consensus 105 Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~ 140 (520)
T PRK12704 105 LEKREEELEKKEKELEQKQQELEKKEEELEELIEEQ 140 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555555554443
No 44
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=87.48 E-value=17 Score=30.99 Aligned_cols=95 Identities=19% Similarity=0.217 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhHhhhHhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 104 IIDRMHHYLTKLIRLRSNAGSSKEEVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSECEQKDKQLETADA 183 (218)
Q Consensus 104 vI~R~~~li~~l~~l~~~~~a~~~~~kq~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~ 183 (218)
|++-++-+=.+|-..++.++++++...++..+.+.+.... + ......+....+.++++.+++.....|+.++.
T Consensus 86 VarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nl--k-----~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~ 158 (205)
T KOG1003|consen 86 VARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNL--K-----SLSAKEEKLEQKEEKYEEELKELTDKLKEAET 158 (205)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH--H-----HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh
Confidence 3444444445777777777777777777766655443321 0 11111123334455555566555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027820 184 HVIALQKQSADLLLEYDRLLED 205 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e 205 (218)
..+-.-+....|.++-|+|-+.
T Consensus 159 rAE~aERsVakLeke~DdlE~k 180 (205)
T KOG1003|consen 159 RAEFAERRVAKLEKERDDLEEK 180 (205)
T ss_pred hHHHHHHHHHHHcccHHHHHHh
Confidence 4444444444444444444443
No 45
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=87.37 E-value=6.7 Score=27.96 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=6.8
Q ss_pred HhhhhHHHHHHHHHH
Q 027820 156 EISTLSVNLKKLKSE 170 (218)
Q Consensus 156 e~~~l~~e~~kLk~e 170 (218)
.++.+..++++|+.+
T Consensus 19 ti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 19 TIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 46
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=86.97 E-value=8.4 Score=38.83 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhc
Q 027820 200 DRLLEDNQNLQKQAQ 214 (218)
Q Consensus 200 drL~~e~~~l~~~l~ 214 (218)
.||.+|.+-++.|++
T Consensus 131 ~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 131 KRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 47
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.96 E-value=15 Score=29.65 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHhc
Q 027820 106 DRMHHYLTKLIRLRSN 121 (218)
Q Consensus 106 ~R~~~li~~l~~l~~~ 121 (218)
+++-++=++|...+++
T Consensus 24 ~~v~~LEreLe~~q~~ 39 (140)
T PF10473_consen 24 DHVESLERELEMSQEN 39 (140)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444445555544444
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=86.86 E-value=16 Score=34.81 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 179 ETADAHVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 179 ~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
...+.+++.|......+..+..++.++..+++
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~ 392 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIV 392 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Confidence 33334444444444333344444444444333
No 49
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=86.64 E-value=6.3 Score=38.42 Aligned_cols=11 Identities=18% Similarity=0.174 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 027820 94 LIGFTLFLGFI 104 (218)
Q Consensus 94 LtGF~LFL~lv 104 (218)
+.|.+--|.|.
T Consensus 101 V~G~S~pFqf~ 111 (546)
T PF07888_consen 101 VRGASTPFQFR 111 (546)
T ss_pred EEEecCCcccC
Confidence 34444444433
No 50
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.41 E-value=25 Score=31.86 Aligned_cols=6 Identities=17% Similarity=0.135 Sum_probs=2.7
Q ss_pred HHHHHh
Q 027820 62 MSIVKI 67 (218)
Q Consensus 62 ~~~~k~ 67 (218)
+++.+|
T Consensus 73 ~EL~~~ 78 (312)
T smart00787 73 KELKKY 78 (312)
T ss_pred HHHHHH
Confidence 444443
No 51
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=86.35 E-value=11 Score=36.23 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 187 ALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 187 aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
.+.+|.+.++.+-.++....+.|+.+|
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555554
No 52
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=86.07 E-value=6.8 Score=31.87 Aligned_cols=56 Identities=16% Similarity=0.241 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGYK 217 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~~ 217 (218)
.++++....+............+-.++..+++++..|..+|.+-.+.+...|..|+
T Consensus 21 ~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~ 76 (157)
T PF04136_consen 21 DQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFE 76 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 34445555555555666667788889999999999999999999999999998876
No 53
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=86.05 E-value=15 Score=29.01 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQN 208 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~ 208 (218)
.+..--|.|.+++.+.|+.+..+.++
T Consensus 82 ~~~r~yk~eYk~llk~y~~~~~~L~k 107 (126)
T PF09403_consen 82 SKVRWYKDEYKELLKKYKDLLNKLDK 107 (126)
T ss_dssp GGGSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677777777777777666554
No 54
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=85.97 E-value=15 Score=36.91 Aligned_cols=52 Identities=25% Similarity=0.348 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQ-SADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQ-ae~l~~EYdrL~~e~~~l~~ 211 (218)
.+..|+.+|..|++.+++++...+.++..|+++ -| -+++=+-|+...+.+|+
T Consensus 549 ~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e-~~~~~e~L~~aL~amqd 601 (697)
T PF09726_consen 549 QLESELKKLRRELKQKEEQIRELESELQELRKYEKE-SEKDTEVLMSALSAMQD 601 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHH
Confidence 344566666666666666666666666666665 22 33344444444444443
No 55
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.93 E-value=20 Score=30.31 Aligned_cols=41 Identities=22% Similarity=0.235 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 167 LKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQ 207 (218)
Q Consensus 167 Lk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~ 207 (218)
++..++..+++++..+-+.+.|.-+.+.+..|.|.|.+..+
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444555555555555555444433
No 56
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=85.86 E-value=26 Score=31.46 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027820 161 SVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
....++|..++..++-.+.-.+..+..-|+|.+.|+.|--|+..|.++.|.....-
T Consensus 80 ek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~ 135 (307)
T PF10481_consen 80 EKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSG 135 (307)
T ss_pred HHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34455677777777777777888899999999999999999999999888765543
No 57
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.51 E-value=21 Score=37.31 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 164 LKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYD 200 (218)
Q Consensus 164 ~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYd 200 (218)
.+.|+-|+++.++++++.+.....+.+|++.+..+-+
T Consensus 817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~ 853 (1174)
T KOG0933|consen 817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELG 853 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555444443
No 58
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=85.46 E-value=37 Score=33.24 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Q 027820 101 LGFIIDRMHHYLTKLIRLRSNAGSS 125 (218)
Q Consensus 101 L~lvI~R~~~li~~l~~l~~~~~a~ 125 (218)
|.-.-+|+..||.....|+++.-..
T Consensus 44 l~~LNDRLA~YIekVR~LEaqN~~L 68 (546)
T KOG0977|consen 44 LQELNDRLAVYIEKVRFLEAQNRKL 68 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788889998888888874443
No 59
>PRK12705 hypothetical protein; Provisional
Probab=85.42 E-value=37 Score=32.93 Aligned_cols=12 Identities=25% Similarity=0.218 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 027820 91 EASLIGFTLFLG 102 (218)
Q Consensus 91 n~YLtGF~LFL~ 102 (218)
++.+-++.+||.
T Consensus 2 ~~~~~~~~~~~~ 13 (508)
T PRK12705 2 AMSILLVILLLL 13 (508)
T ss_pred chhHHHHHHHHH
Confidence 334444444443
No 60
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=85.33 E-value=1.5 Score=40.07 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=7.4
Q ss_pred chhHHHHHHHHHHHH
Q 027820 43 PATVKTIAGTMFVIL 57 (218)
Q Consensus 43 ~~~~~~~~~~l~llF 57 (218)
|..++.++--|++||
T Consensus 116 P~~V~~V~~aV~iLl 130 (344)
T PF12777_consen 116 PEAVKLVMEAVCILL 130 (344)
T ss_dssp -HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhhHH
Confidence 444555555555555
No 61
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.86 E-value=25 Score=30.51 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
+++......+...+..++.++.+....+..+..+..||.+|.++-++++.+
T Consensus 53 eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 53 EELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555566666677888888888899999999999999988877
No 62
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=84.51 E-value=6.8 Score=30.07 Aligned_cols=36 Identities=28% Similarity=0.319 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027820 181 ADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 181 ~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
.-.++.+||+|...+..|=.+|.-|+++|+..+...
T Consensus 20 l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 20 LLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888889999999988889999999998887643
No 63
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=84.40 E-value=8.7 Score=27.98 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=35.2
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 155 EEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 155 ~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
++|+-+.-|+++||.+-.. ...+++.++.+-+.|..+.+.|..|++.-++.+.
T Consensus 18 dtI~LLqmEieELKekn~~-------L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNS-------LSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666554433 3456677777777888888888888887766654
No 64
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=84.36 E-value=4.5 Score=39.43 Aligned_cols=62 Identities=19% Similarity=0.395 Sum_probs=48.4
Q ss_pred HHhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027820 155 EEISTLSVNLKKLKSECEQ----KDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 155 ~e~~~l~~e~~kLk~el~~----~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
..|..+.+.++.|+-++.+ -+..|..+++.+.-|+.||..+..||..|+|-...|+..+..|
T Consensus 317 ~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~Y 382 (546)
T KOG0977|consen 317 SRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAY 382 (546)
T ss_pred ccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHH
Confidence 3455566777777777643 2346667788999999999999999999999999998877654
No 65
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.19 E-value=21 Score=37.87 Aligned_cols=52 Identities=10% Similarity=0.245 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
...+++.++++....+...+....+++++.++..+.||.|..+--.++.+++
T Consensus 971 k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e 1022 (1293)
T KOG0996|consen 971 KAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENKLE 1022 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 3344455555555455555556666666666666666666553222444443
No 66
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=84.11 E-value=30 Score=36.42 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 178 LETADAHVIALQKQSADLLLEYDRLL 203 (218)
Q Consensus 178 l~~~~~d~~aLKKQae~l~~EYdrL~ 203 (218)
++..+.+++.+..|...|..|++.+.
T Consensus 403 ~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 403 LEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444333
No 67
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.00 E-value=21 Score=31.49 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=24.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 153 LQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSAD 194 (218)
Q Consensus 153 ~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~ 194 (218)
...++.++.++..+|+.|++..++.+.+..+...+...|.|+
T Consensus 55 L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~ 96 (247)
T COG3879 55 LVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALED 96 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 334455566666777777776666665555444444444444
No 68
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.43 E-value=8 Score=34.39 Aligned_cols=41 Identities=27% Similarity=0.509 Sum_probs=20.2
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 155 EEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 155 ~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
.+++.+..+++++..++.+.+++..+.+.++..++++++-+
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444444444444444444
No 69
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=83.15 E-value=5.6 Score=29.13 Aligned_cols=22 Identities=9% Similarity=0.285 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027820 190 KQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 190 KQae~l~~EYdrL~~e~~~l~~ 211 (218)
..++...+.+=+++-+||.+++
T Consensus 32 ~~~~~~v~~hI~lLheYNeiKD 53 (83)
T PF07061_consen 32 EDPEKIVKRHIKLLHEYNEIKD 53 (83)
T ss_pred cCHHHHHHHHHHHHHHHhHHHH
Confidence 3455555555566666666554
No 70
>PHA02562 46 endonuclease subunit; Provisional
Probab=83.07 E-value=24 Score=33.70 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 166 KLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 166 kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
+++.++...+..+.....+...++...+.+..++..+.++...+..++
T Consensus 341 el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l 388 (562)
T PHA02562 341 ELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDEL 388 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 333333333333333333444444444444444444444444444333
No 71
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=82.96 E-value=27 Score=29.28 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=33.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027820 157 ISTLSVNLKKLKSECEQKDKQLETADAHVI-ALQKQSADLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 157 ~~~l~~e~~kLk~el~~~~kel~~~~~d~~-aLKKQae~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
+..+..+.+.|+.++...+......++..+ ......+....|.|-|...++.++++++++
T Consensus 129 i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 129 IEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444445555444444333333333332 234445556778888888888888888754
No 72
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=82.71 E-value=9.3 Score=31.09 Aligned_cols=45 Identities=27% Similarity=0.420 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQK---QSADLLLEYDRLLEDNQ 207 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKK---Qae~l~~EYdrL~~e~~ 207 (218)
++.+.+.+++.++.++..++..++.||+ =.+.|+++++.|..++.
T Consensus 21 ~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 21 KVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444 23334444444444444
No 73
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=82.57 E-value=36 Score=36.15 Aligned_cols=11 Identities=27% Similarity=0.211 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 027820 192 SADLLLEYDRL 202 (218)
Q Consensus 192 ae~l~~EYdrL 202 (218)
...+..+|.++
T Consensus 462 ~~~~~~~~~~~ 472 (1163)
T COG1196 462 LKELERELAEL 472 (1163)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 74
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=82.30 E-value=8 Score=31.61 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 165 KKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNL 209 (218)
Q Consensus 165 ~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l 209 (218)
.++++++++.+++.++-+.+.+.+.+|++....++|+.+..|+..
T Consensus 69 ~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f 113 (157)
T PF14235_consen 69 AAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHRF 113 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccchh
Confidence 445555655556666667789999999999999999998777653
No 75
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.21 E-value=24 Score=36.62 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhHhhhH
Q 027820 126 KEEVEQLQKEKMQLKDK 142 (218)
Q Consensus 126 ~~~~kq~~~~~~~~~~~ 142 (218)
+-+++|+..+|..+++.
T Consensus 367 s~qfkqlEqqN~rLKda 383 (1243)
T KOG0971|consen 367 SYQFKQLEQQNARLKDA 383 (1243)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33777777777776654
No 76
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=81.97 E-value=24 Score=28.03 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q 027820 104 IIDRMHHYLTKLIRL 118 (218)
Q Consensus 104 vI~R~~~li~~l~~l 118 (218)
||+-++.||..-..-
T Consensus 36 vin~i~~Ll~~~~r~ 50 (151)
T PF11559_consen 36 VINCIYDLLQQRDRD 50 (151)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666544433
No 77
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=81.71 E-value=13 Score=30.02 Aligned_cols=51 Identities=24% Similarity=0.209 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 027820 161 SVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLED-NQNLQK 211 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e-~~~l~~ 211 (218)
...++.|+.|++..+..+++-...+..|++.+..+..++.+..++ |..++.
T Consensus 40 ~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~ 91 (160)
T PF13094_consen 40 LHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQL 91 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcc
Confidence 345667788888777788888889999999999999999998887 665543
No 78
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.70 E-value=7.6 Score=38.05 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027820 159 TLSVNLKKLKSECEQKDKQLETA-------DAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~-------~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
.++.|++.|-.++++...+...+ -.+..+||+|++.++.+||-...|.+.++..+..|
T Consensus 12 ~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~ 76 (772)
T KOG0999|consen 12 KLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQY 76 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666554443332 23667899999999999999999999888776644
No 79
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=81.68 E-value=42 Score=35.32 Aligned_cols=51 Identities=22% Similarity=0.265 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEY-DRLLEDNQNLQKQA 213 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EY-drL~~e~~~l~~~l 213 (218)
+..+++.++........+.+.+++.++||..++.++. .++..+..+.++++
T Consensus 352 e~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~ 403 (1074)
T KOG0250|consen 352 EVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKL 403 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3444555555555666666777777888888887777 34444444444333
No 80
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=81.28 E-value=12 Score=36.87 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQ 207 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~ 207 (218)
+..|++++...+++.++.+..++.++++||--.|+.+..|..|.+.++
T Consensus 105 l~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 105 LNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 445556666666666666666778888888888888888888866554
No 81
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=80.98 E-value=14 Score=27.60 Aligned_cols=8 Identities=25% Similarity=0.476 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 027820 111 YLTKLIRL 118 (218)
Q Consensus 111 li~~l~~l 118 (218)
.+.++..+
T Consensus 27 ~vd~i~~l 34 (108)
T PF02403_consen 27 DVDEIIEL 34 (108)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 33444443
No 82
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=80.64 E-value=30 Score=28.33 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.+++.++...+...++.......+...+.+++.+..++.++.++++.+.+.++
T Consensus 130 ~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 130 ERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444445556666666667677666666665544
No 83
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=80.40 E-value=53 Score=33.94 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027820 194 DLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 194 ~l~~EYdrL~~e~~~l~~~l 213 (218)
.+..+|..+++|.+.+.+++
T Consensus 180 ~~~~q~~tkl~e~~~en~~l 199 (1265)
T KOG0976|consen 180 EFNMEFQTKLAEANREKKAL 199 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444433
No 84
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.40 E-value=42 Score=35.00 Aligned_cols=31 Identities=13% Similarity=0.294 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 164 LKKLKSECEQKDKQLETADAHVIALQKQSAD 194 (218)
Q Consensus 164 ~~kLk~el~~~~kel~~~~~d~~aLKKQae~ 194 (218)
.+-|+.|++..++.+...+.|++.||...++
T Consensus 327 aesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 327 AESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457788888877888888999999976553
No 85
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=80.38 E-value=13 Score=27.00 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027820 186 IALQKQSADLLLEYDRLLE 204 (218)
Q Consensus 186 ~aLKKQae~l~~EYdrL~~ 204 (218)
+.+.+|+.++..+-+++.+
T Consensus 43 ~~i~~e~~~ll~~~n~l~~ 61 (90)
T PF06103_consen 43 DPITKEINDLLHNTNELLE 61 (90)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 86
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=80.34 E-value=7.5 Score=31.12 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 182 DAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.+.+++|.+|.+|+..|=+.|+.+-+.|.++++
T Consensus 37 akt~~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq 69 (139)
T COG4768 37 AKTLKGLTSQVDGITHETEELLHKTNTLAEDVQ 69 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666667777777777777777776666554
No 87
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.27 E-value=32 Score=34.08 Aligned_cols=10 Identities=10% Similarity=0.252 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 027820 103 FIIDRMHHYL 112 (218)
Q Consensus 103 lvI~R~~~li 112 (218)
.=..|+..+|
T Consensus 375 ~d~~rika~V 384 (652)
T COG2433 375 KDVERIKALV 384 (652)
T ss_pred hhHHHHHHHe
Confidence 3344444444
No 88
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=80.05 E-value=36 Score=28.81 Aligned_cols=13 Identities=8% Similarity=0.268 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECE 172 (218)
Q Consensus 160 l~~e~~kLk~el~ 172 (218)
...++++|+.++.
T Consensus 67 a~~e~~eL~k~L~ 79 (201)
T PF13851_consen 67 AEEEVEELRKQLK 79 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555554
No 89
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=79.64 E-value=38 Score=28.91 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.++..+-..|++.+..-+.+++.+..|.|+.+.+...-....++|...++.|+
T Consensus 144 ~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 144 EELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444555555555555556777777777777777777667677666666554
No 90
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=78.85 E-value=46 Score=33.99 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 168 KSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 168 k~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
+.++..+...+...+..+..|++.++||
T Consensus 377 ~~Ei~~l~d~~d~~e~ki~~Lq~kie~L 404 (775)
T PF10174_consen 377 QGEIEDLRDMLDKKERKINVLQKKIENL 404 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444443
No 91
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.72 E-value=13 Score=29.13 Aligned_cols=80 Identities=28% Similarity=0.384 Sum_probs=40.2
Q ss_pred HHHHHHHHHhHhhhHhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 128 EVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSECEQKD---KQLETADAHVIALQKQSADLLLEYDRLLE 204 (218)
Q Consensus 128 ~~kq~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~kLk~el~~~~---kel~~~~~d~~aLKKQae~l~~EYdrL~~ 204 (218)
.++.+.++-+..++.. .....+++.+..+-+.+..||-... .+++.....+..|+.+.+.++..|+.+++
T Consensus 17 ~ve~L~s~lr~~E~E~-------~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Le 89 (120)
T PF12325_consen 17 LVERLQSQLRRLEGEL-------ASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLE 89 (120)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555544443321 2233334444444444444443222 23444556677777777777777776643
Q ss_pred -------HHHHHHHHhc
Q 027820 205 -------DNQNLQKQAQ 214 (218)
Q Consensus 205 -------e~~~l~~~l~ 214 (218)
+.++|+.++.
T Consensus 90 llGEK~E~veEL~~Dv~ 106 (120)
T PF12325_consen 90 LLGEKSEEVEELRADVQ 106 (120)
T ss_pred HhcchHHHHHHHHHHHH
Confidence 3445555544
No 92
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=78.43 E-value=21 Score=25.36 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027820 182 DAHVIALQKQSADLLLEYDRLLE 204 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~ 204 (218)
+.++..++++.+....+.+.|.+
T Consensus 46 e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 46 EKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555533
No 93
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=78.43 E-value=12 Score=32.72 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 158 STLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 158 ~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
+.+.+++++|+.++++..+.+++.+ +.-..|...+++|..++..|++..
T Consensus 152 eeL~~eleele~e~ee~~erlk~le-------~E~s~LeE~~~~l~~ev~~L~~r~ 200 (290)
T COG4026 152 EELLKELEELEAEYEEVQERLKRLE-------VENSRLEEMLKKLPGEVYDLKKRW 200 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhchhHHHHHHHHH
Confidence 3444555555555555444444333 333444444555555555555443
No 94
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=78.29 E-value=36 Score=34.44 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDN 206 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~ 206 (218)
+-++++..+++..++.......++++|..|+-.++..+|.+-.+.
T Consensus 523 E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dl 567 (961)
T KOG4673|consen 523 ETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDL 567 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 346677778877777888888889999999988888888776643
No 95
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=78.28 E-value=62 Score=31.02 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=13.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH
Q 027820 156 EISTLSVNLKKLKSECEQKDKQLET 180 (218)
Q Consensus 156 e~~~l~~e~~kLk~el~~~~kel~~ 180 (218)
|++..++|++.|..+|++.+++++.
T Consensus 303 e~e~~rkelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 303 ENETSRKELEQLRVALEKAEKELEA 327 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455666666666665555544
No 96
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.24 E-value=49 Score=29.44 Aligned_cols=14 Identities=7% Similarity=0.323 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 027820 178 LETADAHVIALQKQ 191 (218)
Q Consensus 178 l~~~~~d~~aLKKQ 191 (218)
+++.+.+++.++..
T Consensus 82 ik~l~~eI~~~~~~ 95 (265)
T COG3883 82 IKKLQKEIAELKEN 95 (265)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334333333
No 97
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=77.97 E-value=63 Score=30.54 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=5.1
Q ss_pred HHHHHHHHHhh
Q 027820 50 AGTMFVILLSS 60 (218)
Q Consensus 50 ~~~l~llF~Ds 60 (218)
...+.+||+=+
T Consensus 56 A~tLailf~~~ 66 (499)
T COG4372 56 AATLAILFLLN 66 (499)
T ss_pred HHHHHHHHHhh
Confidence 34445555533
No 98
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=77.85 E-value=25 Score=32.10 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027820 182 DAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
-.+++.+++|.+.++.+|-.+.||.+++..+-+.|
T Consensus 132 V~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~y 166 (319)
T PF09789_consen 132 VEQLEKLREQIEQLERDLQSLLDEKEELVTERDAY 166 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999988876555443
No 99
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.78 E-value=67 Score=34.35 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.++..++.+|...+.+++.+.+++..+++-..++..--.++.++.++++..++
T Consensus 542 ~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~ 594 (1293)
T KOG0996|consen 542 TELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLS 594 (1293)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555556666666666666665555555555555554443
No 100
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=77.78 E-value=14 Score=32.11 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcc
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLL-------LEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~-------~EYdrL~~e~~~l~~~l~~ 215 (218)
...+|.+.|..|=..-.++|+-...|+.+|-.-..+.. ..-.|+.+||..++++++.
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555566666667666654444443 3345777778777777653
No 101
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=77.75 E-value=71 Score=30.98 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 178 LETADAHVIALQKQSADLLLEYDRLLEDNQ 207 (218)
Q Consensus 178 l~~~~~d~~aLKKQae~l~~EYdrL~~e~~ 207 (218)
+.+.+.+++.-+++.+...++.+++.++..
T Consensus 99 Lekre~~Le~ke~~L~~re~eLee~~~e~~ 128 (514)
T TIGR03319 99 LDKKEENLEKKEKELSNKEKNLDEKEEELE 128 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444433
No 102
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=77.71 E-value=32 Score=26.97 Aligned_cols=10 Identities=40% Similarity=0.597 Sum_probs=6.9
Q ss_pred HHHHHHHHHH
Q 027820 198 EYDRLLEDNQ 207 (218)
Q Consensus 198 EYdrL~~e~~ 207 (218)
|||.|.+..+
T Consensus 116 eyd~La~~I~ 125 (139)
T PF05615_consen 116 EYDALAKKIN 125 (139)
T ss_pred HHHHHHHHHh
Confidence 7887766654
No 103
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=77.03 E-value=24 Score=25.13 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027820 190 KQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 190 KQae~l~~EYdrL~~e~~~l~ 210 (218)
.+-+.|..|..+|..|++.-+
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~ 59 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQ 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444333
No 104
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=76.73 E-value=80 Score=34.30 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=32.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 157 ISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLL 203 (218)
Q Consensus 157 ~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~ 203 (218)
......++..+..+++....++...+.+++.+++|.+.+..+++.|.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 278 YDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455566667777777777777777777777777777777776653
No 105
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=76.50 E-value=23 Score=31.00 Aligned_cols=50 Identities=16% Similarity=0.263 Sum_probs=26.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 153 LQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 153 ~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL 202 (218)
..++++.+..+.++++.+++..+.+.+..+..+.-+--....|.+-+|.|
T Consensus 154 L~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 154 LLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 44455566666666666666666655555554444433344444444444
No 106
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=76.46 E-value=22 Score=29.29 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 164 LKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQN 208 (218)
Q Consensus 164 ~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~ 208 (218)
+++|+.+++++..+.+..+.+.+.|+++..-...+|.-|..=-+.
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444443333333334445555555555555555555443333
No 107
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=76.02 E-value=25 Score=24.97 Aligned_cols=11 Identities=36% Similarity=0.486 Sum_probs=5.1
Q ss_pred HHHHHHHHhHh
Q 027820 129 VEQLQKEKMQL 139 (218)
Q Consensus 129 ~kq~~~~~~~~ 139 (218)
..+++.+.+.+
T Consensus 14 Ia~L~eEGekL 24 (74)
T PF12329_consen 14 IAQLMEEGEKL 24 (74)
T ss_pred HHHHHHHHHHH
Confidence 44555544433
No 108
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=75.99 E-value=24 Score=24.72 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027820 182 DAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
+.+-..|+.|..++..|=+.|.+.++..+.+++.+
T Consensus 20 ~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 20 KSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666788888889999999999888888877653
No 109
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=75.60 E-value=17 Score=24.64 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027820 183 AHVIALQKQSADLLLEYDRLLE 204 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~ 204 (218)
.+.+.|+++...+..+++.|..
T Consensus 40 ~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 40 SENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444544444444444433
No 110
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=75.58 E-value=56 Score=32.43 Aligned_cols=31 Identities=13% Similarity=0.107 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
..++.+.|+..+.++-.....+.++++.+|+
T Consensus 311 e~e~~~~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 311 EREKHKAQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444444
No 111
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=75.56 E-value=53 Score=28.37 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 187 ALQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 187 aLKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
...++.+....+..+.......++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~l~~ 140 (302)
T PF10186_consen 116 SRQEQLEELQNELEERKQRLSQLQS 140 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 112
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=75.45 E-value=96 Score=31.34 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
.+....+|+.|++.+..|++.++..+..|+++...+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888888888888887777544
No 113
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=75.43 E-value=45 Score=32.55 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 027820 198 EYDRLLEDNQNLQKQ 212 (218)
Q Consensus 198 EYdrL~~e~~~l~~~ 212 (218)
.|..+.++.+.+.++
T Consensus 377 ~ysel~e~leel~e~ 391 (569)
T PRK04778 377 AYSELQEELEEILKQ 391 (569)
T ss_pred CHHHHHHHHHHHHHH
Confidence 333333444333333
No 114
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=75.23 E-value=17 Score=26.91 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 181 ADAHVIALQKQSADLLLEYDRLLEDNQN 208 (218)
Q Consensus 181 ~~~d~~aLKKQae~l~~EYdrL~~e~~~ 208 (218)
.+.+..+++++.++..++--.|-.|+.+
T Consensus 41 lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 41 LEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 3567777778887777777777666654
No 115
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=74.83 E-value=21 Score=27.54 Aligned_cols=34 Identities=32% Similarity=0.315 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 182 DAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
-.++.+||.+...+..|=.+|.-|+++|+..+..
T Consensus 21 ~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 21 LKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888888877764
No 116
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=74.77 E-value=52 Score=27.91 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=19.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 027820 78 SPMDQVLWRTHLLEASLIGFTLFLGF---IIDRMHHYLT 113 (218)
Q Consensus 78 ~~~~~~~~~~rrfn~YLtGF~LFL~l---vI~R~~~li~ 113 (218)
.|.|-..|-.+.|..-|+-++||+.+ +.+++..++.
T Consensus 45 p~~~~~~~~~~l~w~~I~FliL~~lL~k~~~~pI~~vLe 83 (204)
T PRK09174 45 PPFDSTHYASQLLWLAITFGLFYLFMSRVILPRIGGIIE 83 (204)
T ss_pred CCCcchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456667766655544444433 4555666653
No 117
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=74.60 E-value=56 Score=28.23 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 161 SVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNL 209 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l 209 (218)
..+-.+|..+++...++++..+...+.++++.+.++.+-++|..+.+.+
T Consensus 48 ~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 48 DDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444444455555555555555555555555444443
No 118
>PRK04863 mukB cell division protein MukB; Provisional
Probab=74.59 E-value=72 Score=35.08 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 171 CEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDN 206 (218)
Q Consensus 171 l~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~ 206 (218)
+.....++...+.+++.+++|...+..+.+.+..+.
T Consensus 378 leeleeEleelEeeLeeLqeqLaelqqel~elQ~el 413 (1486)
T PRK04863 378 QEENEARAEAAEEEVDELKSQLADYQQALDVQQTRA 413 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444333
No 119
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=74.24 E-value=31 Score=25.12 Aligned_cols=10 Identities=30% Similarity=0.557 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 027820 202 LLEDNQNLQK 211 (218)
Q Consensus 202 L~~e~~~l~~ 211 (218)
|..++++++.
T Consensus 51 L~~en~qLk~ 60 (79)
T PRK15422 51 LERENNHLKE 60 (79)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 120
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.96 E-value=31 Score=33.99 Aligned_cols=30 Identities=33% Similarity=0.546 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 027820 182 DAHVIALQKQSADL---LLEYDRLLEDNQNLQK 211 (218)
Q Consensus 182 ~~d~~aLKKQae~l---~~EYdrL~~e~~~l~~ 211 (218)
+.+-..|+||..+| +=||..|.-|...+..
T Consensus 176 EEENIsLQKqVs~LR~sQVEyEglkheikRleE 208 (772)
T KOG0999|consen 176 EEENISLQKQVSNLRQSQVEYEGLKHEIKRLEE 208 (772)
T ss_pred HHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 44445677776554 3355555444444433
No 121
>PRK02224 chromosome segregation protein; Provisional
Probab=73.90 E-value=87 Score=31.84 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 170 ECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNL 209 (218)
Q Consensus 170 el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l 209 (218)
+++...+++...+..++.+..+...+...++++..+...+
T Consensus 259 ~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l 298 (880)
T PRK02224 259 EIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDL 298 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444333333
No 122
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=73.80 E-value=41 Score=26.29 Aligned_cols=58 Identities=26% Similarity=0.374 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027820 159 TLSVNLKKLKSECEQKDKQLETA----DAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~----~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
....++..|+.+.+.....+... +.....|.++.+.+..-++.|.+.|.-|-+|++.+
T Consensus 70 ~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 70 ELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444444444444444433 23455778888888888999988888888888754
No 123
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=73.79 E-value=10 Score=26.33 Aligned_cols=11 Identities=36% Similarity=0.368 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 027820 162 VNLKKLKSECE 172 (218)
Q Consensus 162 ~e~~kLk~el~ 172 (218)
.++++|+.+++
T Consensus 38 ~e~~~L~~ei~ 48 (80)
T PF04977_consen 38 KENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 124
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=73.69 E-value=62 Score=28.35 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHhc
Q 027820 106 DRMHHYLTKLIRLRSN 121 (218)
Q Consensus 106 ~R~~~li~~l~~l~~~ 121 (218)
.++..+-.++..++.+
T Consensus 45 ~~~~~~~~e~e~le~q 60 (239)
T COG1579 45 KALEALEIELEDLENQ 60 (239)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 125
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=73.65 E-value=32 Score=25.09 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 186 IALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 186 ~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
...|-|.+.|.++|.+.+.++++++....
T Consensus 67 ~~~k~~~~KL~~df~~~l~~fq~~q~~~~ 95 (102)
T PF14523_consen 67 RQQKLQREKLSRDFKEALQEFQKAQRRYA 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578889999999999999998887643
No 126
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=73.59 E-value=58 Score=27.97 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=23.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 155 EEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQN 208 (218)
Q Consensus 155 ~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~ 208 (218)
+.+..+...+.+.....+..+....+.+..++.|..........|..+.++...
T Consensus 176 ~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 176 EKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444433
No 127
>PRK02224 chromosome segregation protein; Provisional
Probab=73.40 E-value=69 Score=32.53 Aligned_cols=9 Identities=44% Similarity=0.342 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 027820 197 LEYDRLLED 205 (218)
Q Consensus 197 ~EYdrL~~e 205 (218)
.+++.+.++
T Consensus 419 ~~~~~l~~~ 427 (880)
T PRK02224 419 EERDELRER 427 (880)
T ss_pred HHHHHHHHH
Confidence 333333333
No 128
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=73.28 E-value=19 Score=33.19 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=36.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 155 EEISTLSVNLKKLKSECEQKDKQLETADAHVIA---LQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 155 ~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~a---LKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
+|+..++.|+..||+|.++++.++++.+.+... .+++ +-.+--||++.+=-++.|+
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~v-et~dv~~d~i~Kimnk~Re 90 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDV-ETNDVIYDKIVKIMNKMRE 90 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHHHHHHHhh
Confidence 466677788888888888887777777777654 2232 2235567777665555543
No 129
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=73.22 E-value=56 Score=27.59 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL 202 (218)
+-++|..+|...+..+..++..+..|.+|++-.++.|.|-
T Consensus 119 eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rq 158 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQ 158 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4566777777777777777888888888888877777653
No 130
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=73.20 E-value=1e+02 Score=34.79 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
.++++-+.+-....+.+-.|..+++.++
T Consensus 1111 e~le~er~~r~K~ek~r~dL~~ele~l~ 1138 (1930)
T KOG0161|consen 1111 EELEAERASRAKAERQRRDLSEELEELK 1138 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 131
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=72.99 E-value=23 Score=29.69 Aligned_cols=21 Identities=10% Similarity=0.064 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027820 185 VIALQKQSADLLLEYDRLLED 205 (218)
Q Consensus 185 ~~aLKKQae~l~~EYdrL~~e 205 (218)
++.++++......+-+|-.|.
T Consensus 137 i~~~~~~~~~~~~~anrwTDN 157 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRWTDN 157 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444333
No 132
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=72.70 E-value=75 Score=28.88 Aligned_cols=57 Identities=23% Similarity=0.312 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 158 STLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 158 ~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
..-+.++..|..+|..+.++....+.+|..|..|.-.+++..-.+.-|+++++..|.
T Consensus 209 ~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 209 SEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334456677777777777777777888888888888888887777777777776654
No 133
>PHA02047 phage lambda Rz1-like protein
Probab=72.70 E-value=17 Score=27.58 Aligned_cols=45 Identities=24% Similarity=0.323 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQ 207 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~ 207 (218)
+.+.|..+|+..+..+..-+..++++..+++.-.+|-++-+++|.
T Consensus 35 ~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~ 79 (101)
T PHA02047 35 EAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNR 79 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345566667666666667778888888888888888887777664
No 134
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=72.57 E-value=37 Score=26.51 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.+.++|+|...+..+...|..+.+..+..+.
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777776666666666666555544
No 135
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=72.33 E-value=24 Score=27.60 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 177 QLETADAHVIALQKQSADLLLEYDRLLED 205 (218)
Q Consensus 177 el~~~~~d~~aLKKQae~l~~EYdrL~~e 205 (218)
..+..+..+.+++-+.++++..|+||..|
T Consensus 66 ~~~~~~~~l~~v~~~v~~L~~s~~RL~~e 94 (132)
T PF10392_consen 66 SIEELESVLQAVRSSVESLQSSYERLRSE 94 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678889999999999999999877
No 136
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=71.70 E-value=29 Score=30.90 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=7.0
Q ss_pred HHHHHHHHHHH
Q 027820 93 SLIGFTLFLGF 103 (218)
Q Consensus 93 YLtGF~LFL~l 103 (218)
.=+|.+||=.|
T Consensus 130 t~~GA~LydlL 140 (267)
T PF10234_consen 130 TQRGASLYDLL 140 (267)
T ss_pred HHHHHHHHHHH
Confidence 55677777554
No 137
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.21 E-value=98 Score=31.22 Aligned_cols=56 Identities=25% Similarity=0.325 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
++.-++++|+.++...+..+.......+.+..-.++..++-+.|..|+..++.+++
T Consensus 472 ~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e 527 (716)
T KOG4593|consen 472 KLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLE 527 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444444444444444456667777777777766665543
No 138
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=71.12 E-value=77 Score=28.30 Aligned_cols=60 Identities=17% Similarity=0.343 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 027820 158 STLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGYK 217 (218)
Q Consensus 158 ~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~~ 217 (218)
+....|++.++.++++++++++.....+.+++.....+..+=-|+.+...-++.++..|+
T Consensus 203 ~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 203 ELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566777777777777777777788888888888888887788777777777777765
No 139
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=71.00 E-value=54 Score=29.70 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=14.3
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHhH
Q 027820 113 TKLIRLRSNAGSSKEEVEQLQKEKMQ 138 (218)
Q Consensus 113 ~~l~~l~~~~~a~~~~~kq~~~~~~~ 138 (218)
.++...+.+.+.++..+.++++++..
T Consensus 177 ~ql~~~~~~l~~ae~~l~~fr~~~~~ 202 (362)
T TIGR01010 177 NEVKEAEQRLNATKAELLKYQIKNKV 202 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35556666655555556666665433
No 140
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=70.85 E-value=29 Score=28.65 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027820 186 IALQKQSADLLLEYDRL 202 (218)
Q Consensus 186 ~aLKKQae~l~~EYdrL 202 (218)
..|++|.+.|.+|+.+|
T Consensus 114 ~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 114 ESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 141
>PRK14148 heat shock protein GrpE; Provisional
Probab=70.75 E-value=26 Score=29.76 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=24.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 156 EISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSA 193 (218)
Q Consensus 156 e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae 193 (218)
+++.+..++++|+.++++.+..+.++.+|.+..||..+
T Consensus 41 e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~ 78 (195)
T PRK14148 41 QLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAE 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777666666667777777766544
No 142
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=70.35 E-value=22 Score=34.14 Aligned_cols=30 Identities=30% Similarity=0.318 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
+.+.|.+|-+.++..-+.+.+|+..|+.++
T Consensus 91 Elq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 91 ELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444
No 143
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=70.30 E-value=73 Score=27.69 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
.+..+++.|+.+.............+.+.+.++++.|......+...-+.+-.+
T Consensus 56 ~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~ 109 (264)
T PF06008_consen 56 SLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQ 109 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333333334444444444444444444444444433333
No 144
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=70.04 E-value=65 Score=27.03 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 177 QLETADAHVIALQKQSADLLLEYDRLLED 205 (218)
Q Consensus 177 el~~~~~d~~aLKKQae~l~~EYdrL~~e 205 (218)
.+...+.++...+.+.+....+|+.+..+
T Consensus 107 ~l~~~~~~l~~~~~~l~~~~~e~~~~~~~ 135 (201)
T PF12072_consen 107 ELEKKEEELEQRKEELEEREEELEELIEE 135 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444455555555554443
No 145
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=70.01 E-value=36 Score=24.00 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 027820 198 EYDRLLEDNQNLQKQA 213 (218)
Q Consensus 198 EYdrL~~e~~~l~~~l 213 (218)
+-++|.+|.+.+++++
T Consensus 48 e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 48 ENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 146
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.79 E-value=1.1e+02 Score=29.50 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhHhhhHhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 105 IDRMHHYLTKLIRLRSNAGSSKEEVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSECEQKDKQLETADAH 184 (218)
Q Consensus 105 I~R~~~li~~l~~l~~~~~a~~~~~kq~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d 184 (218)
++|.++++-++.-+.++.+-+ ++++.+ .+... +..=.+......++.....++-.|+.+|.. ..
T Consensus 426 L~Rsfavtdellf~sakhddh---vR~ayk---llt~i-H~nc~ei~E~i~~tg~~~revrdlE~qI~~---------E~ 489 (521)
T KOG1937|consen 426 LNRSFAVTDELLFMSAKHDDH---VRLAYK---LLTRI-HLNCMEILEMIRETGALKREVRDLESQIYV---------EE 489 (521)
T ss_pred HhhhHHHHHHHHHHHhccCHH---HHHHHH---HHHHH-HHHHHHHHHHHHHcchHHHHHHHHHHHHhH---------HH
Confidence 556666666666655555544 333332 21111 111111111222333455666667666643 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 185 VIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 185 ~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
..+-=++.|.+...|+.+.++++.|.++.
T Consensus 490 ~k~~l~slEkl~~Dyqairqen~~L~~~i 518 (521)
T KOG1937|consen 490 QKQYLKSLEKLHQDYQAIRQENDQLFSEI 518 (521)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333667778888888888888887764
No 147
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=69.67 E-value=38 Score=26.71 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027820 183 AHVIALQKQSADLLLEYDRLLED 205 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e 205 (218)
.++..++.+.....+.|+.++..
T Consensus 69 ~~~~~L~~~~~~k~~~~~~l~~~ 91 (150)
T PF07200_consen 69 EELKELESEYQEKEQQQDELSSN 91 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 34444444444444444444433
No 148
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=69.65 E-value=79 Score=33.36 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=16.1
Q ss_pred cccchhH-HHHHHHHHHhhhCCcchhH
Q 027820 21 VKIGPLR-ELVIKSLDQLKMGKGPATV 46 (218)
Q Consensus 21 lP~~P~r-k~~~~~~~~~~~~~~~~~~ 46 (218)
.|-|||| .-+.+++.-...|+.++.+
T Consensus 337 s~HIPYRESKLTRLLQDSLGGkTKT~i 363 (1041)
T KOG0243|consen 337 SGHIPYRESKLTRLLQDSLGGKTKTCI 363 (1041)
T ss_pred CCCCCchHHHHHHHHHHHhCCCceeEE
Confidence 4555887 4456777766666766543
No 149
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=69.52 E-value=39 Score=24.46 Aligned_cols=12 Identities=8% Similarity=0.124 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQK 174 (218)
Q Consensus 163 e~~kLk~el~~~ 174 (218)
|+++|+.-+...
T Consensus 20 EI~rLn~lv~sL 31 (76)
T PF11544_consen 20 EIDRLNILVGSL 31 (76)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444433333
No 150
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=68.78 E-value=33 Score=23.21 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
..+..|...-+.|..+++.|..++..|+.+
T Consensus 33 ~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 33 EKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555555555555544443
No 151
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=68.53 E-value=1e+02 Score=31.67 Aligned_cols=39 Identities=31% Similarity=0.413 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLE 198 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~E 198 (218)
+..+++.|..+++.+...+.++...++.+..-...++.|
T Consensus 341 Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~E 379 (775)
T PF10174_consen 341 LQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGE 379 (775)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333333333333333
No 152
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=67.91 E-value=55 Score=26.54 Aligned_cols=29 Identities=24% Similarity=0.109 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 027820 93 SLIGFTLFLGFII-DRMHHYLTKLIRLRSN 121 (218)
Q Consensus 93 YLtGF~LFL~lvI-~R~~~li~~l~~l~~~ 121 (218)
||..+.+.+.+++ -.+..+..++.+++..
T Consensus 2 ~i~i~l~~l~iilli~~~~~~~kl~kl~r~ 31 (151)
T PF14584_consen 2 YIIIGLLVLVIILLILIIILNIKLRKLKRR 31 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433 2233333445555443
No 153
>PRK14160 heat shock protein GrpE; Provisional
Probab=67.84 E-value=34 Score=29.41 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027820 188 LQKQSADLLLEYDRLLEDNQNL 209 (218)
Q Consensus 188 LKKQae~l~~EYdrL~~e~~~l 209 (218)
++++.+.+...|-|+..|.++.
T Consensus 73 l~~e~~elkd~~lR~~AefeN~ 94 (211)
T PRK14160 73 LENELEALKDRLLRTVAEYDNY 94 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444333
No 154
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=67.79 E-value=34 Score=32.21 Aligned_cols=15 Identities=33% Similarity=0.414 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 027820 188 LQKQSADLLLEYDRL 202 (218)
Q Consensus 188 LKKQae~l~~EYdrL 202 (218)
++++.+.+..+++.+
T Consensus 78 l~~~~~~~~~~~~~~ 92 (425)
T PRK05431 78 LKEEIKALEAELDEL 92 (425)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 155
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.76 E-value=68 Score=33.03 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
+..-..++|..+.+.+-+++..+.+.++|+-+-|++..+|-....+|+++.++.+
T Consensus 655 l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~ 709 (970)
T KOG0946|consen 655 LDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLD 709 (970)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777777777777777778888888888999999888888888877764
No 156
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=67.40 E-value=52 Score=24.90 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 161 SVNLKKLKSECEQKDKQLETADAHVIALQKQS 192 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~~~~d~~aLKKQa 192 (218)
.+++.+|+.++.+.+.+++.....++++..|+
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45666666666665544444444444443333
No 157
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=67.38 E-value=1.7e+02 Score=30.96 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQ 207 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~ 207 (218)
..++++++-|.....++.+....+.-+|.|......-|.-+....+
T Consensus 488 ~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~e 533 (1195)
T KOG4643|consen 488 NQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLE 533 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555556666666666666666666666654443333
No 158
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=67.17 E-value=1.5e+02 Score=30.14 Aligned_cols=19 Identities=53% Similarity=0.709 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027820 194 DLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 194 ~l~~EYdrL~~e~~~l~~~ 212 (218)
.+..+|..|-+|+-.||++
T Consensus 94 rll~dyselEeENislQKq 112 (717)
T PF09730_consen 94 RLLQDYSELEEENISLQKQ 112 (717)
T ss_pred HHhhhhHHHHHHHHHHHHH
Confidence 3333444443333333333
No 159
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=67.03 E-value=69 Score=26.21 Aligned_cols=52 Identities=27% Similarity=0.429 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
+...++.|+.+.+.+...++........+..+=..+.++|+++.+.|.++-.
T Consensus 94 L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~ 145 (158)
T PF09744_consen 94 LQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLR 145 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4444445554444443333333333344555555666788888887776543
No 160
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=66.81 E-value=32 Score=26.05 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=23.5
Q ss_pred hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKL--KSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLE 204 (218)
Q Consensus 160 l~~e~~kL--k~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~ 204 (218)
+..+++.| ..++.....++....-++.++..|.++++.=-+.|.+
T Consensus 54 lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 54 LETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 4455555555555555555666666555544444433
No 161
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=66.54 E-value=1.8e+02 Score=31.58 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
+...+++||.+..+-..+.+.+++.+.+.|.|+.+-....+.|.+.++.....+
T Consensus 1624 L~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~ 1677 (1758)
T KOG0994|consen 1624 LETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLL 1677 (1758)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666555566666777788888888888777777766666554443
No 162
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=66.47 E-value=97 Score=27.69 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQS--ADLLLEYDRLLED 205 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQa--e~l~~EYdrL~~e 205 (218)
++..|+.||...+.+.-.+|+++..+|.|. |++...++-+.+-
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~ 210 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIER 210 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456677777766666666677777776664 5555566666443
No 163
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=66.44 E-value=1.5e+02 Score=29.99 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 178 LETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 178 l~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
.+-.+..+..|+||+++-.+....|-.++..|+++.
T Consensus 589 ~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~ 624 (786)
T PF05483_consen 589 MKILENKCNNLRKQVENKNKNIEELQQENKALKKKI 624 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333344455666666666666666655555555543
No 164
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=66.39 E-value=28 Score=31.64 Aligned_cols=13 Identities=23% Similarity=-0.077 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 027820 91 EASLIGFTLFLGF 103 (218)
Q Consensus 91 n~YLtGF~LFL~l 103 (218)
++...+-.|+.|.
T Consensus 191 ~~S~Aa~~Lc~WV 203 (344)
T PF12777_consen 191 KASKAAGSLCKWV 203 (344)
T ss_dssp HH-TTHHHHHHHH
T ss_pred HHhhcchHHHHHH
Confidence 4455566666664
No 165
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=66.32 E-value=1.6e+02 Score=30.56 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.|+.-++.--+|...|--+|.++-.+.+.|.+
T Consensus 365 ~dvr~i~e~k~nve~elqsL~~l~aerqeQid 396 (1265)
T KOG0976|consen 365 MDVRSIQEKKENVEEELQSLLELQAERQEQID 396 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555556666666666555544
No 166
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.28 E-value=1.1e+02 Score=32.45 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 189 QKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 189 KKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
+|-+++..++|+.+..+.++++++
T Consensus 309 ~k~i~~~kk~~~~~~~~ie~~ek~ 332 (1141)
T KOG0018|consen 309 EKDIETAKKDYRALKETIERLEKE 332 (1141)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHH
Confidence 333333333343333333333333
No 167
>PRK04863 mukB cell division protein MukB; Provisional
Probab=66.16 E-value=2e+02 Score=31.78 Aligned_cols=11 Identities=9% Similarity=0.229 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 027820 189 QKQSADLLLEY 199 (218)
Q Consensus 189 KKQae~l~~EY 199 (218)
..+.+.+..++
T Consensus 389 EeeLeeLqeqL 399 (1486)
T PRK04863 389 EEEVDELKSQL 399 (1486)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 168
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=65.95 E-value=82 Score=30.93 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
..+++++|+.+++.....+++...+++..++|.++.
T Consensus 217 ~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~ 252 (555)
T TIGR03545 217 IKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKAD 252 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345566666666655555555555555444444444
No 169
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=65.94 E-value=50 Score=26.01 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEY 199 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EY 199 (218)
.+++.++.++...-.+++..+.....+.+|...+..-|
T Consensus 55 ~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~ 92 (150)
T PF07200_consen 55 PELEELRSQLQELYEELKELESEYQEKEQQQDELSSNY 92 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34445555555544455555555555555555554444
No 170
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=65.91 E-value=1.3e+02 Score=29.05 Aligned_cols=52 Identities=25% Similarity=0.342 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.+...+.+|+..+..|.+...++..|+.-++.|..|-.+...++..++.+..
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~ 333 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREK 333 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666777777777777777777777777777777777777777765543
No 171
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=65.90 E-value=62 Score=25.27 Aligned_cols=12 Identities=33% Similarity=0.371 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 027820 178 LETADAHVIALQ 189 (218)
Q Consensus 178 l~~~~~d~~aLK 189 (218)
+...+.|+.-||
T Consensus 98 veEL~~Dv~DlK 109 (120)
T PF12325_consen 98 VEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 172
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=65.78 E-value=79 Score=26.42 Aligned_cols=55 Identities=24% Similarity=0.281 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSAD-LLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~-l~~EYdrL~~e~~~l~~~l 213 (218)
.+..+++.|+.+.+.+++++...+...+++++..+. .+.+-.+..+|.+.++.+-
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~ 179 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQN 179 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777666666677766666654 4444555666666665543
No 173
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=65.62 E-value=1e+02 Score=27.77 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027820 182 DAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
+..+..+..+.+.....-+.+.+++..++.++..|
T Consensus 113 q~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l 147 (309)
T PF09728_consen 113 QATLKDIQAQMEEQSERNIKLREENEELREKLKSL 147 (309)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence 56677778888888888888888888888777643
No 174
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=65.61 E-value=30 Score=22.38 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 182 DAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
..+.++|+.+-+.|.+|=++|..+...++..++
T Consensus 11 K~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 11 KASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345566666666666666666666666665543
No 175
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=65.60 E-value=22 Score=30.51 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=30.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 156 EISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLED 205 (218)
Q Consensus 156 e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e 205 (218)
+|+.++..+..++.++++...+++.++...+.--.+-.+.++|-+.|+..
T Consensus 33 ~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR 82 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555666666666666666666666666655555555666666666544
No 176
>PRK14139 heat shock protein GrpE; Provisional
Probab=65.03 E-value=30 Score=29.09 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSAD 194 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~ 194 (218)
.+..++++++.++++.+..+.+...|.+..||..+.
T Consensus 36 ~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~k 71 (185)
T PRK14139 36 ALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQE 71 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777787777775543
No 177
>smart00338 BRLZ basic region leucin zipper.
Probab=64.62 E-value=41 Score=22.77 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027820 184 HVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL 202 (218)
....|+.+.+.+..|++.|
T Consensus 41 en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 41 ENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 178
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=64.20 E-value=98 Score=26.94 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhc
Q 027820 200 DRLLEDNQNLQKQAQ 214 (218)
Q Consensus 200 drL~~e~~~l~~~l~ 214 (218)
+.+.+|+++|++.+.
T Consensus 96 ~~l~~en~~L~~lL~ 110 (276)
T PRK13922 96 EQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHhc
Confidence 344555555555443
No 179
>smart00338 BRLZ basic region leucin zipper.
Probab=63.90 E-value=34 Score=23.18 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
..+..|..+-+.|..+.+.|..++..+++++
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555443
No 180
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=63.85 E-value=58 Score=24.18 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 027820 103 FIIDRMHHYLTKLIRLRSN 121 (218)
Q Consensus 103 lvI~R~~~li~~l~~l~~~ 121 (218)
..+.++..+-.+...+..+
T Consensus 26 ~~vd~i~~ld~~~r~l~~~ 44 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQE 44 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444
No 181
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=63.59 E-value=33 Score=32.33 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
....+++....+..++.++.++...++++++.
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555543
No 182
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=63.13 E-value=19 Score=25.53 Aligned_cols=14 Identities=29% Similarity=0.169 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 027820 183 AHVIALQKQSADLL 196 (218)
Q Consensus 183 ~d~~aLKKQae~l~ 196 (218)
.+.+.|+.+.+.++
T Consensus 45 ~en~~L~~ei~~l~ 58 (85)
T TIGR02209 45 KEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHc
Confidence 34444444444443
No 183
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=63.11 E-value=20 Score=29.22 Aligned_cols=10 Identities=30% Similarity=0.351 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 027820 162 VNLKKLKSEC 171 (218)
Q Consensus 162 ~e~~kLk~el 171 (218)
.|+.+++.|+
T Consensus 47 ~Ei~~l~~E~ 56 (161)
T PF04420_consen 47 KEILQLKREL 56 (161)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 184
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=62.74 E-value=63 Score=31.09 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhc
Q 027820 107 RMHHYLTKLIRLRSN 121 (218)
Q Consensus 107 R~~~li~~l~~l~~~ 121 (218)
.+-++|-++..++.+
T Consensus 60 TlrTlva~~k~~r~~ 74 (472)
T TIGR03752 60 TLRTLVAEVKELRKR 74 (472)
T ss_pred hHHHHHHHHHHHHHH
Confidence 345666666666666
No 185
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=62.55 E-value=84 Score=25.59 Aligned_cols=53 Identities=26% Similarity=0.361 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhc
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSAD-----LLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~-----l~~EYdrL~~e~~~l~~~l~ 214 (218)
..+.++..++.....+..+.......|+.|... +...||+..++.+.++..+.
T Consensus 105 ~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~ 162 (177)
T PF13870_consen 105 EELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIK 162 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444455555555443 23468888777777776654
No 186
>PRK14161 heat shock protein GrpE; Provisional
Probab=62.12 E-value=35 Score=28.47 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=26.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 157 ISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 157 ~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
.+++.+++++|+.++++.++.+.++.+|.+..||.++.-
T Consensus 21 ~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke 59 (178)
T PRK14161 21 VETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKA 59 (178)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777777777777765543
No 187
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=62.06 E-value=35 Score=32.83 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSA 193 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae 193 (218)
.++.|.+.+..+.++.+..++..+.++..|+.|.+
T Consensus 87 aLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 87 EIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555566667777777663
No 188
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=61.74 E-value=16 Score=27.06 Aligned_cols=35 Identities=34% Similarity=0.378 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 161 SVNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
..++.+|+.+++..++++...+..++++++|.+-+
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777777777777777777777777776644
No 189
>PHA03011 hypothetical protein; Provisional
Probab=61.73 E-value=13 Score=28.45 Aligned_cols=30 Identities=17% Similarity=0.440 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 182 DAHVIALQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
+-|+.+++.|.+++-.-|+.|.+||+.+.+
T Consensus 56 ~GD~Nai~e~ldeL~~qYN~L~dEYn~i~N 85 (120)
T PHA03011 56 EGDINAIIEILDELIAQYNELLDEYNLIEN 85 (120)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777888888888888888888876543
No 190
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.15 E-value=1.7e+02 Score=31.67 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDN 206 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~ 206 (218)
.++++|+.+++....+++..+.++.-++...+.++.+|+++..+.
T Consensus 888 ~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1311)
T TIGR00606 888 EQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK 932 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555554433
No 191
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=60.94 E-value=45 Score=25.34 Aligned_cols=43 Identities=19% Similarity=0.327 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 161 SVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLL 203 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~ 203 (218)
++|--++|+.++..+|.++.....+=-|.|.-|-|.+-|..|+
T Consensus 77 kee~~emkkdleaankrve~q~ekiflmekkfe~lekkyesln 119 (122)
T PF05325_consen 77 KEETIEMKKDLEAANKRVESQAEKIFLMEKKFETLEKKYESLN 119 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHh
Confidence 3445566667776666666655556667777777777777664
No 192
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=60.76 E-value=1.8e+02 Score=28.79 Aligned_cols=36 Identities=28% Similarity=0.249 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
...++.+++.++.....+++..+.+++.+++|.+.+
T Consensus 433 l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 433 AQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444333
No 193
>PRK14153 heat shock protein GrpE; Provisional
Probab=60.60 E-value=25 Score=29.81 Aligned_cols=38 Identities=26% Similarity=0.197 Sum_probs=24.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 157 ISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSAD 194 (218)
Q Consensus 157 ~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~ 194 (218)
+..+..++++++.++++.++.+.+..+|.+..||..+.
T Consensus 35 ~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~k 72 (194)
T PRK14153 35 DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAR 72 (194)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777766666666677777777665553
No 194
>PRK14162 heat shock protein GrpE; Provisional
Probab=60.48 E-value=15 Score=31.20 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=26.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 156 EISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSAD 194 (218)
Q Consensus 156 e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~ 194 (218)
++..+..++++|+.++++.+..+.+..+|.+..||..+.
T Consensus 40 e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~k 78 (194)
T PRK14162 40 PVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAK 78 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667777777777777777777777777765544
No 195
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=60.42 E-value=94 Score=25.47 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027820 183 AHVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL 202 (218)
.++..++.+.+.+..++|.|
T Consensus 73 ~~~~~lr~~~e~L~~eie~l 92 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKL 92 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544
No 196
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=60.37 E-value=1.1e+02 Score=26.11 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 177 QLETADAHVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 177 el~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
.++....|+++++.|.++|+.....=..|.+.|+
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667789999999999999887655555555443
No 197
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=60.17 E-value=1.6e+02 Score=30.04 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027820 179 ETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 179 ~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
.+...+.+.+|||.+....+=|+|..+.+.|+.++++.
T Consensus 219 n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 219 NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34456778888999999888899988888888877643
No 198
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=60.14 E-value=54 Score=28.06 Aligned_cols=13 Identities=8% Similarity=0.253 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKD 175 (218)
Q Consensus 163 e~~kLk~el~~~~ 175 (218)
|+--|+..++...
T Consensus 32 Eiv~Lr~ql~e~~ 44 (202)
T PF06818_consen 32 EIVSLRAQLRELR 44 (202)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444443333
No 199
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=59.60 E-value=56 Score=22.57 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 167 LKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 167 Lk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
.+..|++.++.-.....+++.|+++.+.+
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344443333333344555555555443
No 200
>KOG4052 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.44 E-value=13 Score=30.87 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027820 183 AHVIALQKQSADLLLEYDRLLED 205 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e 205 (218)
.++-+||+|+|++..||..+.+|
T Consensus 145 vevt~lk~qce~lleeyed~i~e 167 (190)
T KOG4052|consen 145 VEVTALKQQCESLLEEYEDLIEE 167 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999887
No 201
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=59.41 E-value=2e+02 Score=31.20 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 027820 104 IIDRMHHYLTKLIRLR 119 (218)
Q Consensus 104 vI~R~~~li~~l~~l~ 119 (218)
||.|+..=|.+...++
T Consensus 1533 IL~~T~~di~ra~~L~ 1548 (1758)
T KOG0994|consen 1533 ILSRTKGDIARAENLQ 1548 (1758)
T ss_pred HHHhhhhhHHHHHHHH
Confidence 3344433333333333
No 202
>PRK14145 heat shock protein GrpE; Provisional
Probab=59.18 E-value=47 Score=28.21 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 157 ISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSA 193 (218)
Q Consensus 157 ~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae 193 (218)
+..+..++++++.++++....+.+..+|.+..||.++
T Consensus 47 ~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~ 83 (196)
T PRK14145 47 IEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTE 83 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666777777666544
No 203
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=59.13 E-value=99 Score=25.31 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 027820 105 IDRMHHYLTKLIRL 118 (218)
Q Consensus 105 I~R~~~li~~l~~l 118 (218)
++.++..+-.|..+
T Consensus 28 mP~VV~vLE~Le~~ 41 (158)
T PF09744_consen 28 MPKVVRVLELLESL 41 (158)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 204
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=58.96 E-value=36 Score=26.11 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 027820 180 TADAHVIALQKQ 191 (218)
Q Consensus 180 ~~~~d~~aLKKQ 191 (218)
+.+.++..||++
T Consensus 105 ~~~~~~k~lk~E 116 (118)
T PF13815_consen 105 KQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHh
Confidence 334444444443
No 205
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=58.95 E-value=48 Score=32.70 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=26.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 157 ISTLSVNLKKLKSECEQKDKQLETAD-------AHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 157 ~~~l~~e~~kLk~el~~~~kel~~~~-------~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
++.+.+++++|+.++++.+.++...+ ..+..+-++.+.+..+.+.+.++-.++...++
T Consensus 565 ~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~ 629 (638)
T PRK10636 565 IARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLE 629 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555544443210 02334444444455555555555555544443
No 206
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=58.95 E-value=1.2e+02 Score=26.32 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 027820 194 DLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 194 ~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
....|-.+|.+-+..|+.||+++
T Consensus 232 k~~eei~fLk~tN~qLKaQLegI 254 (259)
T KOG4001|consen 232 KMKEEIEFLKETNRQLKAQLEGI 254 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556667888888999999865
No 207
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=58.86 E-value=61 Score=22.83 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027820 89 LLEASLIGFTLFLGFIIDRMHHY 111 (218)
Q Consensus 89 rfn~YLtGF~LFL~lvI~R~~~l 111 (218)
+|+..+.++.+++++.+-...+-
T Consensus 3 ~l~~~l~~~v~~~~~~~v~~~~~ 25 (85)
T TIGR02209 3 KLYVLLLLAILVSAISVVSAQHQ 25 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666554444433
No 208
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=58.72 E-value=1.7e+02 Score=29.00 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
+...|+......+.+.++.-..+..++.+.+.+..|.-.--+.|.+|..+++
T Consensus 427 e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e 478 (594)
T PF05667_consen 427 EYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELE 478 (594)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443333333333344445555555555555555444444444444443
No 209
>PRK14143 heat shock protein GrpE; Provisional
Probab=58.55 E-value=49 Score=28.95 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 157 ISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSAD 194 (218)
Q Consensus 157 ~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~ 194 (218)
+..+..++++|+.+++..+..+-+..+|.+.+||..+.
T Consensus 69 ~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 69 LAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777766777777777777776544
No 210
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=58.45 E-value=2e+02 Score=28.66 Aligned_cols=50 Identities=24% Similarity=0.392 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQ-------SADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQ-------ae~l~~EYdrL~~e~~~l~~~ 212 (218)
+..+++.++...+..++.+..++..|+.| ...-...|-.|..|++.|..+
T Consensus 203 kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q 259 (617)
T PF15070_consen 203 KLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQ 259 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444445455444 334445566777777776654
No 211
>PLN02678 seryl-tRNA synthetase
Probab=58.42 E-value=56 Score=31.16 Aligned_cols=26 Identities=12% Similarity=0.000 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNL 209 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l 209 (218)
+...||+|.+.+..+++.+.++...+
T Consensus 79 ~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 79 ETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554443
No 212
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=58.13 E-value=76 Score=24.56 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 182 DAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
-+++.+||+|...+-.|=..|.=|+++|++.|.
T Consensus 21 ~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~ 53 (114)
T COG4467 21 LAELGGLKQHLGSLVEENTALRLENEKLRERLG 53 (114)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhC
Confidence 468888999999999998899999999998875
No 213
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=58.12 E-value=66 Score=31.86 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
.++++|+.+|.+...++...+.+++.++.+...+..+..+...+.+++.
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le 376 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELE 376 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544444444444444444444444444444444444333
No 214
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=58.05 E-value=78 Score=28.65 Aligned_cols=57 Identities=19% Similarity=0.181 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 158 STLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 158 ~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
..+.-+|+-||..|+..++.+...++++.--.+..+.+...+|.|..+...++.++.
T Consensus 108 ~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 108 SALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777777777766666666665555666666666777777777776664
No 215
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=58.00 E-value=1.7e+02 Score=28.57 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=34.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 152 RLQEEISTLSVNLKKLKSECEQKDKQLETADA---HVIALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 152 ~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~---d~~aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
..+++++...+|++-|+....++.+.+++... +++-|-..-+.|.+|.|+...+.++|++.
T Consensus 334 kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~ 397 (622)
T COG5185 334 KLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKS 397 (622)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34445555555666666666655555555433 44444444566777777766666666543
No 216
>PRK14161 heat shock protein GrpE; Provisional
Probab=57.63 E-value=30 Score=28.87 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
..++.+++|.+.+...|-|+..|.++.+..
T Consensus 26 ~ei~~l~~e~~elkd~~lR~~AefeN~rkR 55 (178)
T PRK14161 26 PEITALKAEIEELKDKLIRTTAEIDNTRKR 55 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555554443
No 217
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=57.54 E-value=39 Score=30.24 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQN 208 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~ 208 (218)
+.+.++...+.|..|..+..+-+++
T Consensus 54 ~~~~l~~~i~~L~~E~~~h~~~~~~ 78 (298)
T PF11262_consen 54 EKERLKNLIDKLPEELKKHQEHVEK 78 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333333
No 218
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=57.45 E-value=2.3e+02 Score=29.07 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 177 QLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 177 el~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
+...++.++.+|+...+...+|...|.=|..-++++|
T Consensus 128 ~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 128 EKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455555555555555555555544444444443
No 219
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=57.45 E-value=3.1e+02 Score=31.03 Aligned_cols=56 Identities=25% Similarity=0.411 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhc
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLL--------LEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~--------~EYdrL~~e~~~l~~~l~ 214 (218)
++..++..|+.++.....++++.+.+.+--|++...+. .+|.+|.++...|.+.++
T Consensus 1261 plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~ 1324 (1822)
T KOG4674|consen 1261 PLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELE 1324 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555544444444443 346666666666665543
No 220
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=56.96 E-value=64 Score=22.47 Aligned_cols=39 Identities=10% Similarity=0.341 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 164 LKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 164 ~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL 202 (218)
+...+..+++.++.....+..-.+..++.+++...-+++
T Consensus 8 l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 8 LNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555555555555444444
No 221
>PRK02119 hypothetical protein; Provisional
Probab=56.90 E-value=68 Score=22.74 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
+...+.-.+.-++++++.+...+.+++.|+.|...+
T Consensus 14 LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 14 LEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555666666666667777777776666
No 222
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.75 E-value=2.1e+02 Score=30.97 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 027820 93 SLIGFTLFLGFIIDRM 108 (218)
Q Consensus 93 YLtGF~LFL~lvI~R~ 108 (218)
.+.|-.-|+-=+|...
T Consensus 657 ~~~~~~~~~~k~ie~a 672 (1311)
T TIGR00606 657 MLAGATAVYSQFITQL 672 (1311)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555555
No 223
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=56.65 E-value=70 Score=27.62 Aligned_cols=14 Identities=14% Similarity=0.195 Sum_probs=10.4
Q ss_pred HHHHHHHhhHHHHH
Q 027820 52 TMFVILLSSLMSIV 65 (218)
Q Consensus 52 ~l~llF~Dsv~~~~ 65 (218)
....-|+||+.+|-
T Consensus 41 ~a~~~~~dAl~kia 54 (223)
T cd07605 41 QAAKVFFDALAKIG 54 (223)
T ss_pred HHHHHHHHHHHHHH
Confidence 44567999998874
No 224
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=56.63 E-value=77 Score=27.50 Aligned_cols=31 Identities=32% Similarity=0.357 Sum_probs=21.8
Q ss_pred HHHHHH-HHHHHH------HHHHHHHHHHHHHHHHHhc
Q 027820 91 EASLIG-FTLFLG------FIIDRMHHYLTKLIRLRSN 121 (218)
Q Consensus 91 n~YLtG-F~LFL~------lvI~R~~~li~~l~~l~~~ 121 (218)
-+||+| |+||+. |+=.|.-...+.|..+++.
T Consensus 74 t~~llgs~slymfrwal~~lye~r~~r~~~~L~kLra~ 111 (251)
T COG5415 74 TALLLGSGSLYMFRWALTKLYEFRNNRRLRKLAKLRAI 111 (251)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 669999 888753 5556666677777777654
No 225
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=56.59 E-value=65 Score=22.41 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 167 LKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 167 Lk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
.+.-++++++.+-..+.+++.|+.|...+
T Consensus 16 qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L 44 (69)
T PF04102_consen 16 QEDTIEELNDVVTEQQRQIDRLQRQLRLL 44 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445555555555544
No 226
>PRK14153 heat shock protein GrpE; Provisional
Probab=56.57 E-value=54 Score=27.79 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 182 DAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
+.+++.+++|++.+...|-|+..|.++.+...
T Consensus 39 ~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~ 70 (194)
T PRK14153 39 DSETEKCREEIESLKEQLFRLAAEFDNFRKRT 70 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666666555443
No 227
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=56.47 E-value=43 Score=25.63 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=16.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHH
Q 027820 153 LQEEISTLSVNLKKLKSECEQKD 175 (218)
Q Consensus 153 ~~~e~~~l~~e~~kLk~el~~~~ 175 (218)
..+||+.++-|+++|...+.+.+
T Consensus 34 l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 34 LLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667778888888888776543
No 228
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=56.26 E-value=90 Score=29.42 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 191 QSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 191 Qae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
+.+.+...|..+.++.++++.++.
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~ 399 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELK 399 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555444443
No 229
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=56.10 E-value=2e+02 Score=27.86 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYD 200 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYd 200 (218)
.+..++.+.+.+|+....+-++.......|....+.+..|.+
T Consensus 341 ~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae 382 (522)
T PF05701_consen 341 SLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAE 382 (522)
T ss_pred hHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHH
Confidence 344444444444433322222223333333344444444333
No 230
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=55.80 E-value=64 Score=22.10 Aligned_cols=19 Identities=37% Similarity=0.501 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 027820 158 STLSVNLKKLKSECEQKDK 176 (218)
Q Consensus 158 ~~l~~e~~kLk~el~~~~k 176 (218)
+++.+++++++.++....+
T Consensus 7 ~rL~Kel~kl~~~i~~~~~ 25 (66)
T PF10458_consen 7 ERLEKELEKLEKEIERLEK 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 231
>PRK00295 hypothetical protein; Provisional
Probab=55.68 E-value=68 Score=22.38 Aligned_cols=40 Identities=18% Similarity=0.044 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 161 SVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLL 203 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~ 203 (218)
...+.-.+.-++.+++.+-..+.+++.|++|...+ ++|+.
T Consensus 11 E~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L---~~rl~ 50 (68)
T PRK00295 11 ESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL---IKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 33344444555566666666677777777777776 44553
No 232
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=55.08 E-value=64 Score=21.89 Aligned_cols=18 Identities=6% Similarity=0.333 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027820 185 VIALQKQSADLLLEYDRL 202 (218)
Q Consensus 185 ~~aLKKQae~l~~EYdrL 202 (218)
+.++|+|-+.+.++-+++
T Consensus 16 i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 16 INTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 233
>PHA00024 IX minor coat protein
Probab=54.87 E-value=15 Score=22.40 Aligned_cols=16 Identities=31% Similarity=0.864 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 027820 89 LLEASLIGFTLFLGFI 104 (218)
Q Consensus 89 rfn~YLtGF~LFL~lv 104 (218)
.|-+|+.||+|+....
T Consensus 8 ffgA~ilG~~l~~~Il 23 (33)
T PHA00024 8 FFGAYILGWALFYGIL 23 (33)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678999999998754
No 234
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=54.85 E-value=1e+02 Score=25.87 Aligned_cols=6 Identities=17% Similarity=-0.119 Sum_probs=2.5
Q ss_pred HHHHHH
Q 027820 93 SLIGFT 98 (218)
Q Consensus 93 YLtGF~ 98 (218)
|+-||.
T Consensus 31 ~lq~e~ 36 (201)
T KOG4603|consen 31 NLQREH 36 (201)
T ss_pred HHHHHh
Confidence 444443
No 235
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=54.62 E-value=1.7e+02 Score=26.67 Aligned_cols=12 Identities=25% Similarity=0.410 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHh
Q 027820 202 LLEDNQNLQKQA 213 (218)
Q Consensus 202 L~~e~~~l~~~l 213 (218)
|..|.-.|+.+|
T Consensus 190 l~~eKr~Lq~~l 201 (310)
T PF09755_consen 190 LEAEKRRLQEKL 201 (310)
T ss_pred HHHHHHHHHHHH
Confidence 333333344433
No 236
>PRK14140 heat shock protein GrpE; Provisional
Probab=54.25 E-value=41 Score=28.43 Aligned_cols=38 Identities=5% Similarity=0.174 Sum_probs=26.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 157 ISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSAD 194 (218)
Q Consensus 157 ~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~ 194 (218)
++.+..++++++.++...++.+.++.+|.+..||.++.
T Consensus 39 ~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~r 76 (191)
T PRK14140 39 LDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQK 76 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777777777777776543
No 237
>PRK15396 murein lipoprotein; Provisional
Probab=54.21 E-value=81 Score=22.84 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 169 SECEQKDKQLETADAHVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 169 ~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL 202 (218)
.++..++.+......|+.+++..++.-..|=.|-
T Consensus 32 sqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~ra 65 (78)
T PRK15396 32 SDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARA 65 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334556666666666654444443
No 238
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=54.09 E-value=25 Score=24.26 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 027820 182 DAHVIALQKQSADL 195 (218)
Q Consensus 182 ~~d~~aLKKQae~l 195 (218)
+.+.+.|+.+.+.+
T Consensus 37 ~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 37 KKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHh
Confidence 33444444444444
No 239
>PRK14155 heat shock protein GrpE; Provisional
Probab=54.02 E-value=43 Score=28.68 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLL 196 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~ 196 (218)
.+..++++++.++++.++.+.+..+|.+..||..+.-.
T Consensus 17 ~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~ 54 (208)
T PRK14155 17 DAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREM 54 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777778877777665543
No 240
>PF14282 FlxA: FlxA-like protein
Probab=53.88 E-value=94 Score=23.47 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=31.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 156 EISTLSVNLKKLKSECEQKDK----QLETADAHVIALQKQSADLLLEYDRLLEDNQ 207 (218)
Q Consensus 156 e~~~l~~e~~kLk~el~~~~k----el~~~~~d~~aLKKQae~l~~EYdrL~~e~~ 207 (218)
.++.+...+..|+.+|.+... .-+.++..++.|+.|+..|+...-++..+..
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777766665543 2233455666777777777777666655443
No 241
>CHL00132 psaF photosystem I subunit III; Validated
Probab=53.88 E-value=8.9 Score=32.15 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLL 203 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~ 203 (218)
..+++|++.+++.+. ......++++|.++.++-|||-.
T Consensus 44 ~~~k~Le~rlk~Y~~----~s~p~lal~~qi~~tk~RFe~Y~ 81 (185)
T CHL00132 44 NSVKKLENRLAKYEA----NSPPALALQQQIDKTKARFDKYG 81 (185)
T ss_pred HHHHHHHhhhhccCC----CCChHHHHHHHHHHHHHHHHHhc
Confidence 445566666654432 22345789999999999998753
No 242
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=53.76 E-value=2.1e+02 Score=27.38 Aligned_cols=15 Identities=13% Similarity=-0.004 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 027820 99 LFLGFIIDRMHHYLT 113 (218)
Q Consensus 99 LFL~lvI~R~~~li~ 113 (218)
-++.+|-.-.-.++.
T Consensus 132 ~d~PlC~eC~d~l~~ 146 (447)
T KOG2751|consen 132 VDHPLCEECMDVLLN 146 (447)
T ss_pred cccchHHHHHHHHHH
Confidence 344455444444443
No 243
>PRK11519 tyrosine kinase; Provisional
Probab=53.69 E-value=87 Score=31.45 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 181 ADAHVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 181 ~~~d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
.+.+...|+.+.+-.+.-|+.|+...++++
T Consensus 368 ~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 368 TQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666666666666777776666654
No 244
>PRK14158 heat shock protein GrpE; Provisional
Probab=53.45 E-value=45 Score=28.24 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 157 ISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSAD 194 (218)
Q Consensus 157 ~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~ 194 (218)
+..+..++++++.++++.+..+-+..+|.+..+|..+.
T Consensus 42 ~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~k 79 (194)
T PRK14158 42 IKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQK 79 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777777777777765544
No 245
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=53.44 E-value=2.1e+02 Score=28.49 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=43.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q 027820 156 EISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEY---DRLLEDNQNLQKQA 213 (218)
Q Consensus 156 e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EY---drL~~e~~~l~~~l 213 (218)
.+.....|+++++..+..-+.++.....|++.+..|..|++-+. -.|.+|.+.+-+++
T Consensus 38 ~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l 98 (701)
T PF09763_consen 38 YLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTL 98 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhc
Confidence 34445678888888888888899999999999999988887664 35555555554444
No 246
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.33 E-value=3.1e+02 Score=29.21 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
.+..|++.++.+++++..++++.+.++.-.+-+.+.+..+|..+..+++++++.
T Consensus 415 ~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~ 468 (1200)
T KOG0964|consen 415 ILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDK 468 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888888888888888899999999999988888888777776654
No 247
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=53.30 E-value=93 Score=25.92 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 154 QEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDN 206 (218)
Q Consensus 154 ~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~ 206 (218)
+..-..++.|+++|..+++ .++........||.-+..+..|-|+-.+.|
T Consensus 119 d~~~~eL~~eI~~L~~~i~----~le~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 119 DQTKNELEDEIKQLEKEIQ----RLEEIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 248
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=52.96 E-value=58 Score=24.85 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 181 ADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 181 ~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.++.++.+.++.+.+++.+..+.++.+.++..++
T Consensus 91 l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 91 LKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666677777777777777777776666554
No 249
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=52.88 E-value=1.4e+02 Score=25.11 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=9.0
Q ss_pred HHHhhhhHHHHHHHHHHH
Q 027820 154 QEEISTLSVNLKKLKSEC 171 (218)
Q Consensus 154 ~~e~~~l~~e~~kLk~el 171 (218)
.+++..+..++.+|+.+.
T Consensus 130 e~~i~~Le~ki~el~~~~ 147 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQA 147 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555555543
No 250
>PRK14151 heat shock protein GrpE; Provisional
Probab=52.79 E-value=79 Score=26.29 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLL 196 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~ 196 (218)
+..++++++.++++.++.+-+..+|.+..||.++.=.
T Consensus 25 l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~ 61 (176)
T PRK14151 25 LTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDV 61 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666667777777777655433
No 251
>PRK00736 hypothetical protein; Provisional
Probab=52.56 E-value=77 Score=22.10 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
+...+.-.+.-++.+++.+.+.+.+++.|++|...+
T Consensus 10 LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 10 LEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555566666666677777777777766
No 252
>PLN02320 seryl-tRNA synthetase
Probab=52.42 E-value=75 Score=30.87 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 027820 187 ALQKQSADLLLEYDRL 202 (218)
Q Consensus 187 aLKKQae~l~~EYdrL 202 (218)
.+|++...+..+...+
T Consensus 141 ~lk~~i~~le~~~~~~ 156 (502)
T PLN02320 141 NLKEGLVTLEEDLVKL 156 (502)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 253
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=52.20 E-value=3.2e+02 Score=29.08 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 161 SVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.++..+++..|+..+.-+...+..-..+..|+.+++..++.-.++.+.+-..+.
T Consensus 503 ~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld 556 (1041)
T KOG0243|consen 503 KEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLD 556 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444433334444445555666777777777776666665544443
No 254
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=51.88 E-value=2.2e+02 Score=27.16 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027820 184 HVIALQKQSADLLLEYDRLLEDN 206 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~ 206 (218)
.+.-...|...+..+|++.....
T Consensus 188 sl~kd~~~~~~l~~e~n~~k~s~ 210 (446)
T KOG4438|consen 188 SLLKDFNQQMSLLAEYNKMKKSS 210 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhh
Confidence 33334466666666666554443
No 255
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=51.85 E-value=3.3e+02 Score=29.19 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027820 187 ALQKQSADLLLEYDRLLEDNQNL 209 (218)
Q Consensus 187 aLKKQae~l~~EYdrL~~e~~~l 209 (218)
.++.|.+++..+|+-|.+.|+..
T Consensus 356 ~~~~~~~~l~~~~~~Lt~~~~di 378 (1201)
T PF12128_consen 356 EWRNELENLQEQLDLLTSKHQDI 378 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555444444433
No 256
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.79 E-value=2.5e+02 Score=27.79 Aligned_cols=26 Identities=15% Similarity=-0.083 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNL 209 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l 209 (218)
...-+.+|.|+-..+|..++...+..
T Consensus 418 e~~d~i~~le~e~~~y~de~~kaqae 443 (654)
T KOG4809|consen 418 EFADQIKQLEKEASYYRDECGKAQAE 443 (654)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777776666554433
No 257
>PRK05560 DNA gyrase subunit A; Validated
Probab=51.73 E-value=2.9e+02 Score=28.41 Aligned_cols=44 Identities=7% Similarity=0.122 Sum_probs=26.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 157 ISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYD 200 (218)
Q Consensus 157 ~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYd 200 (218)
+.++.+|.++|+++++..+.=|..-+.-..-++++.+.+.+.|.
T Consensus 432 ~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ikkkfg 475 (805)
T PRK05560 432 RDKIEDEYKELLALIADLKDILASPERLLEIIKEELLEIKEKFG 475 (805)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 34455666666666665555555545555566677776666664
No 258
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=51.62 E-value=1.2e+02 Score=24.05 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhc
Q 027820 105 IDRMHHYLTKLIRLRSN 121 (218)
Q Consensus 105 I~R~~~li~~l~~l~~~ 121 (218)
|+++..+..+...+++.
T Consensus 22 iN~Fsrl~~R~~~lk~d 38 (131)
T KOG1760|consen 22 INEFSRLNSRKDDLKAD 38 (131)
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 55555555555665555
No 259
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=51.37 E-value=1.2e+02 Score=24.11 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 176 KQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 176 kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
......++.+..|..+......-|+.+...|..++
T Consensus 108 ~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 108 VKAEHFERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 33344466777888888888888888877777654
No 260
>PRK14147 heat shock protein GrpE; Provisional
Probab=51.23 E-value=40 Score=27.90 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSAD 194 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~ 194 (218)
+..++++|+.++++.+..+.+..+|.+..+|..+.
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~k 57 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLENQRKRIAR 57 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777666666777777777765544
No 261
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=51.08 E-value=78 Score=32.05 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
+++.++.-++.|..-|++..+.++.+.+
T Consensus 587 ~~~~l~~~ae~LaeR~e~a~d~Qe~L~~ 614 (717)
T PF10168_consen 587 ERKSLRESAEKLAERYEEAKDKQEKLMK 614 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444433
No 262
>PRK14163 heat shock protein GrpE; Provisional
Probab=51.06 E-value=66 Score=27.71 Aligned_cols=37 Identities=11% Similarity=0.272 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 158 STLSVNLKKLKSECEQKDKQLETADAHVIALQKQSAD 194 (218)
Q Consensus 158 ~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~ 194 (218)
..+..++++++.++++.+..+-+..+|.+..||..+.
T Consensus 43 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~k 79 (214)
T PRK14163 43 AGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVER 79 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777787777776544
No 263
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.00 E-value=89 Score=22.36 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 158 STLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 158 ~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
+-+.-|+++||.+-..+. .+....+.+-+.|..|-..|..||..-|+.+.
T Consensus 21 ~LLQmEieELKEknn~l~-------~e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 21 TLLQMEIEELKEKNNSLS-------QEVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHhhHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455665555444333 34444555666666666677777776555543
No 264
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=50.53 E-value=2.3e+02 Score=28.50 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 181 ADAHVIALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 181 ~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
.+.+...|+.|.+-...-|+.|+...++++-+
T Consensus 368 ~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~ 399 (726)
T PRK09841 368 TQQEVLRLSRDVEAGRAVYLQLLNRQQELSIS 399 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777777766433
No 265
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=50.28 E-value=1.1e+02 Score=23.31 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQN 208 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~ 208 (218)
....+|+.+|+.++.++++.+.+++.|.=.-..|.+.-..|.+|.+.
T Consensus 26 ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 26 AKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888888888888887766666666666666665553
No 266
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=50.17 E-value=31 Score=24.22 Aligned_cols=31 Identities=32% Similarity=0.356 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 185 VIALQKQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 185 ~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
+.+|-.+.+.|-.-|.+|..||..|+.++.+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~ 32 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKT 32 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888888888877654
No 267
>PRK11281 hypothetical protein; Provisional
Probab=49.91 E-value=1.5e+02 Score=31.79 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 167 LKSECEQKDKQLETADAHVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 167 Lk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL 202 (218)
|+..+.+...++...++++.+..+|.-+++...+|-
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERA 161 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERA 161 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Confidence 444444433444444444444444444444433333
No 268
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=49.67 E-value=30 Score=25.01 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=11.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHH
Q 027820 154 QEEISTLSVNLKKLKSECEQK 174 (218)
Q Consensus 154 ~~e~~~l~~e~~kLk~el~~~ 174 (218)
.++|..+..++++|+.||.+.
T Consensus 6 ~eEn~~Lk~eiqkle~ELq~~ 26 (76)
T PF07334_consen 6 QEENARLKEEIQKLEAELQQN 26 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666665543
No 269
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=49.65 E-value=1.4e+02 Score=28.08 Aligned_cols=10 Identities=50% Similarity=0.654 Sum_probs=4.6
Q ss_pred HHHHHHHHhc
Q 027820 112 LTKLIRLRSN 121 (218)
Q Consensus 112 i~~l~~l~~~ 121 (218)
+.++..+-.+
T Consensus 29 vd~i~~ld~~ 38 (418)
T TIGR00414 29 LEKLIALDDE 38 (418)
T ss_pred HHHHHHHHHH
Confidence 4455554333
No 270
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=49.63 E-value=99 Score=22.49 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
..+++|--.++....|.|.|..|++-|+
T Consensus 30 ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq 57 (80)
T PF10224_consen 30 DSLEALSDRVEEVKEENEKLESENEYLQ 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 271
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=49.62 E-value=91 Score=31.33 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=14.5
Q ss_pred HHHHHHhcccccHHHHHHHHHHHhH
Q 027820 114 KLIRLRSNAGSSKEEVEQLQKEKMQ 138 (218)
Q Consensus 114 ~l~~l~~~~~a~~~~~kq~~~~~~~ 138 (218)
++..++.+.+.++++++++++++..
T Consensus 275 qL~~l~~~L~~aE~~l~~fr~~~~~ 299 (726)
T PRK09841 275 QLPEVRSELDQAEEKLNVYRQQRDS 299 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4555555555555557777766543
No 272
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.57 E-value=1.8e+02 Score=26.95 Aligned_cols=13 Identities=46% Similarity=0.595 Sum_probs=7.3
Q ss_pred HHHHHHHHhHhhh
Q 027820 129 VEQLQKEKMQLKD 141 (218)
Q Consensus 129 ~kq~~~~~~~~~~ 141 (218)
++++..+++.++.
T Consensus 227 me~~~aeq~slkR 239 (365)
T KOG2391|consen 227 MERLQAEQESLKR 239 (365)
T ss_pred HHHHHHHHHHHHh
Confidence 5666665555543
No 273
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=49.42 E-value=68 Score=24.19 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
+.++.++++.+.+.++.+.+.++.+.++..++
T Consensus 94 ~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555443
No 274
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=49.25 E-value=69 Score=26.03 Aligned_cols=19 Identities=42% Similarity=0.553 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQL 178 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel 178 (218)
++.+++++++|+++.+++.
T Consensus 71 l~Rk~~kl~~el~~~~~~~ 89 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLNKSL 89 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544433
No 275
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=49.22 E-value=1.3e+02 Score=23.63 Aligned_cols=42 Identities=24% Similarity=0.258 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 166 KLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 166 kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
++..+|+ +.++..+..+.+|.+|-+.+...|++|..+..+.-
T Consensus 70 ~~~~eL~---er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 70 EAVDELE---ERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444 34455677899999999999999999987766543
No 276
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=49.20 E-value=2e+02 Score=25.92 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhhhHhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Q 027820 127 EEVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSECEQKDKQLETADAHVIAL----------QKQSADLL 196 (218)
Q Consensus 127 ~~~kq~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aL----------KKQae~l~ 196 (218)
+....+..+..........-..+......+++....+++.++.+++..+.++...+.+++.. +.+.....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~ 202 (423)
T TIGR01843 123 AVPELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELE 202 (423)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 027820 197 LEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 197 ~EYdrL~~e~~~l~~~l~~ 215 (218)
.+|..+..+...++.+++.
T Consensus 203 ~~~~~~~~~l~~~~~~l~~ 221 (423)
T TIGR01843 203 RERAEAQGELGRLEAELEV 221 (423)
T ss_pred HHHHHHHhHHHHHHHHHHH
No 277
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=49.18 E-value=1.2e+02 Score=23.70 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 161 SVNLKKLKSECEQKDKQLET-ADAHVIALQKQSADLLLEYDRLLEDNQN 208 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~-~~~d~~aLKKQae~l~~EYdrL~~e~~~ 208 (218)
..++++.+.+++..+.++.. -....+-|.+-+++-++=|+.+.+-.+.
T Consensus 31 ~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a~~ 79 (128)
T PF06295_consen 31 EQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGAEE 79 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544444433 2333434444444444444444444444
No 278
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=48.97 E-value=1.7e+02 Score=28.69 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 180 TADAHVIALQKQSADLLLEYDRLLEDNQN 208 (218)
Q Consensus 180 ~~~~d~~aLKKQae~l~~EYdrL~~e~~~ 208 (218)
+...+++.+|++.+.-...+..+.++.+.
T Consensus 216 ~~~~e~d~lk~e~~~~~~~i~~~~~~l~~ 244 (555)
T TIGR03545 216 KIKEEFDKLKKEGKADKQKIKSAKNDLQN 244 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444444444444333
No 279
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=48.72 E-value=28 Score=28.81 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=14.6
Q ss_pred HHHHHHHHhHhhhHhhhhhHHHHHHHHHhhhhHHHHHHHHHHH
Q 027820 129 VEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSEC 171 (218)
Q Consensus 129 ~kq~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~kLk~el 171 (218)
+.++.+.+..++... +|...+..+++.|+.|+.+||.|+
T Consensus 9 lN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 9 LNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776532 443344445555555555555555
No 280
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=48.53 E-value=2e+02 Score=26.39 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=47.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhc
Q 027820 151 KRLQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEY--------------DRLLEDNQNLQKQAQ 214 (218)
Q Consensus 151 ~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EY--------------drL~~e~~~l~~~l~ 214 (218)
.....+.+....+++.|+.++...-.|.+....+.++.|--+..|+.|- |.|+.|+--|+.++.
T Consensus 129 e~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~ 206 (319)
T PF09789_consen 129 EDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLK 206 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 3444556666777777888888777788888889999999999999884 667777666665554
No 281
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.48 E-value=2.6e+02 Score=26.90 Aligned_cols=55 Identities=20% Similarity=0.090 Sum_probs=43.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 153 LQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQ 207 (218)
Q Consensus 153 ~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~ 207 (218)
...+++.++..+..|+..+++...+..+....++++.-|..-.++.|-|.++..-
T Consensus 309 leeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lr 363 (502)
T KOG0982|consen 309 LEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILR 363 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777788888888888888888888899999999999988877766543
No 282
>PRK11519 tyrosine kinase; Provisional
Probab=48.47 E-value=2.7e+02 Score=27.97 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=20.5
Q ss_pred HHHHHH-HHHHHHHhcccccHHHHHHHHHHHhH
Q 027820 107 RMHHYL-TKLIRLRSNAGSSKEEVEQLQKEKMQ 138 (218)
Q Consensus 107 R~~~li-~~l~~l~~~~~a~~~~~kq~~~~~~~ 138 (218)
+....+ .++..++.+.+.++.+++++++++..
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~ 299 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDS 299 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344555 35667777766666668888876554
No 283
>PRK14154 heat shock protein GrpE; Provisional
Probab=48.44 E-value=1e+02 Score=26.46 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
.+..++++++.++++.+..+.+..+|.+..||..+.-
T Consensus 56 ~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE 92 (208)
T PRK14154 56 KLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIERE 92 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667676666666666677777776655443
No 284
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=48.33 E-value=1.7e+02 Score=24.93 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNL 209 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l 209 (218)
.++...-++.+...+.|+..+.+.+.+
T Consensus 119 ~~~~~~~~~l~kskk~Y~~~~ke~~~a 145 (251)
T cd07653 119 QKLESSIKQLEKSKKAYEKAFKEAEKA 145 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444443333
No 285
>PRK14143 heat shock protein GrpE; Provisional
Probab=48.21 E-value=52 Score=28.76 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 185 VIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 185 ~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
++.++++.+.+...|-|+..|.++.++..
T Consensus 76 l~~l~~e~~elkd~~lR~~AdfeN~RKR~ 104 (238)
T PRK14143 76 LESLKQELEELNSQYMRIAADFDNFRKRT 104 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555554443
No 286
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=48.17 E-value=2.6e+02 Score=26.93 Aligned_cols=10 Identities=40% Similarity=0.487 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 027820 163 NLKKLKSECE 172 (218)
Q Consensus 163 e~~kLk~el~ 172 (218)
+++++.+|++
T Consensus 390 k~~k~~kel~ 399 (493)
T KOG0804|consen 390 KLKKCQKELK 399 (493)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 287
>PRK04406 hypothetical protein; Provisional
Probab=48.14 E-value=99 Score=22.06 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
+...+.-.+.-++.+++.+-..+.+++.|++|...+
T Consensus 16 LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 16 LECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555666666666667777777776666
No 288
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.02 E-value=1.4e+02 Score=27.59 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 027820 188 LQKQSADLLLEYD 200 (218)
Q Consensus 188 LKKQae~l~~EYd 200 (218)
|+.|.-.+++.-|
T Consensus 258 LEqq~~~L~~niD 270 (365)
T KOG2391|consen 258 LEQQLQSLQKNID 270 (365)
T ss_pred HHHHHHHHHhhhH
Confidence 3333333333333
No 289
>PRK14148 heat shock protein GrpE; Provisional
Probab=47.70 E-value=57 Score=27.66 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
.++.++++.+.+...|-|+..|.++.++..
T Consensus 48 ~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~ 77 (195)
T PRK14148 48 TIKELEDSCDQFKDEALRAKAEMENIRKRA 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555443
No 290
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.48 E-value=57 Score=29.04 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=20.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 157 ISTLSVNLKKLKSECEQKDKQLETADAHVIALQK 190 (218)
Q Consensus 157 ~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKK 190 (218)
++.+.+|+..||+.|..++..+-.++..+..||-
T Consensus 227 i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 4455666677777776666665555555555543
No 291
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=47.43 E-value=89 Score=21.28 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQK 190 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKK 190 (218)
+..++..|+.++..+..++.....++.+-|.
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554443333333344433333
No 292
>PRK14160 heat shock protein GrpE; Provisional
Probab=47.34 E-value=1.8e+02 Score=24.98 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=16.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 157 ISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQS 192 (218)
Q Consensus 157 ~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQa 192 (218)
+..+..++++|+.+++..+..+.+..+|.+..||.+
T Consensus 63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~ 98 (211)
T PRK14160 63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRT 98 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444455555444433
No 293
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=47.33 E-value=1.4e+02 Score=26.70 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
...+++..+.|++...++++.++.++.-++.+..-....--+|-.+-.++.+.+..+
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888888888888899998888888777766666766666666665543
No 294
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=47.18 E-value=1.2e+02 Score=22.57 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 190 KQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 190 KQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
++..+++.+-+.+.+|++.|+.+++
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555554
No 295
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=47.06 E-value=2.8e+02 Score=26.92 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 169 SECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDN 206 (218)
Q Consensus 169 ~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~ 206 (218)
.+|++++++|...+.+++..+++.+.+..+++++..+.
T Consensus 97 e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~ 134 (514)
T TIGR03319 97 ESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQ 134 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666666666554443
No 296
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=47.04 E-value=3.1e+02 Score=27.46 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 181 ADAHVIALQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 181 ~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
.+.+...|+.+++...+-|+.++..+++.+-
T Consensus 374 ~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~ 404 (754)
T TIGR01005 374 QQVDLDALQRDAAAKRQLYESYLTNYRQAAS 404 (754)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777777766553
No 297
>PRK12704 phosphodiesterase; Provisional
Probab=47.03 E-value=2.8e+02 Score=26.95 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 172 EQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 172 ~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
+.+.+.+.+.+.+++..++..+...++++....+.+++..
T Consensus 99 e~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~ 138 (520)
T PRK12704 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555666666666666666666666665543
No 298
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=46.89 E-value=3.3e+02 Score=27.73 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhHhh-hHhhhhhHH-HHHHHHHhhhhHHHHHHHHHH
Q 027820 93 SLIGFTLFLGFIIDRMHHYLTKLIRLRSNAGSSKEEVEQLQKEKMQLK-DKEEKASKE-LKRLQEEISTLSVNLKKLKSE 170 (218)
Q Consensus 93 YLtGF~LFL~lvI~R~~~li~~l~~l~~~~~a~~~~~kq~~~~~~~~~-~~~~~~~~~-~~~~~~e~~~l~~e~~kLk~e 170 (218)
.+.|+.-|+. .|+.+..+|+.-....+ + .+++++.-..-+ +...--.-. ..-...+...+.+|.++|+++
T Consensus 371 il~g~~~~~~-~id~~i~iir~~~~~~~----~---~~~l~~~f~~~~~q~~~il~m~l~~lt~~e~~kl~~e~~~l~~~ 442 (738)
T TIGR01061 371 IVEGLIKAIS-IIDEIIKLIRSSEDKSD----A---KENLIDNFKFTENQAEAIVSLRLYRLTNTDIFELKEEQNELEKK 442 (738)
T ss_pred HHHHHHHHHH-hhhhHhHHHHcCCCHHH----H---HHHHHHhcCCCHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 7899999988 89999888753221111 0 222222100000 000000000 000111233455555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 171 CEQKDKQLETADAHVIALQKQSADLLLEYD 200 (218)
Q Consensus 171 l~~~~kel~~~~~d~~aLKKQae~l~~EYd 200 (218)
++..+.=|...+.-..-++++.+.+.+.|-
T Consensus 443 i~~l~~iL~~~~~~~~~i~~el~~ik~kfg 472 (738)
T TIGR01061 443 IISLEQIIASEKARNKLLKKQLEEYKKQFA 472 (738)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 655555444445555566666666666663
No 299
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=46.84 E-value=1.5e+02 Score=25.84 Aligned_cols=56 Identities=29% Similarity=0.350 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH---HHHHHHHHHHHHhccc
Q 027820 161 SVNLKKLKSECEQKDKQLETADAHVIALQKQSAD---LLLEYD---RLLEDNQNLQKQAQGY 216 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~---l~~EYd---rL~~e~~~l~~~l~~~ 216 (218)
....++.+.|.+.+.+.+++.+.++.-|++.+.| .++.=| +..+.++..|.+++.|
T Consensus 113 ~a~~Kky~~e~k~k~~sleK~qseLKKlRrKsqg~k~~~ky~~ke~q~~~~~~~~q~ele~f 174 (232)
T cd07646 113 TAALKKYQTEHRSKGESLEKCQAELKKLRKKSQGSKNPQKYSDKELQYIEAISNKQGELENY 174 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777888888778777554 222222 3334555666666544
No 300
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=46.27 E-value=1.8e+02 Score=25.01 Aligned_cols=47 Identities=13% Similarity=0.211 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 167 LKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 167 Lk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
++++-+..+...+++.+......+|.....+.|...+.|++.++++.
T Consensus 100 ~~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~kE~e~a~~~~ 146 (239)
T cd07658 100 QHKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLARENEKLQDQV 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445556666777777777778888888888888777654
No 301
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=46.13 E-value=29 Score=24.96 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhc
Q 027820 48 TIAGTMFVILLSSLMSIVKIQNK 70 (218)
Q Consensus 48 ~~~~~l~llF~Dsv~~~~k~~~~ 70 (218)
++..+++++|+-.+.=+..|.+.
T Consensus 7 ~~plivf~ifVap~WL~lHY~sk 29 (75)
T PF06667_consen 7 FVPLIVFMIFVAPIWLILHYRSK 29 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445556677777666666554
No 302
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=46.09 E-value=84 Score=26.30 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 027820 165 KKLKSECEQKDKQLETADAHVIALQKQSADL-LLEYDRL 202 (218)
Q Consensus 165 ~kLk~el~~~~kel~~~~~d~~aLKKQae~l-~~EYdrL 202 (218)
.+|+.||.+..+||+.+-.++ ||++++ .+.||.|
T Consensus 50 ~eLkNeLREVREELkEKmeEI----KQIKdiMDKDFDKL 84 (205)
T PF15079_consen 50 QELKNELREVREELKEKMEEI----KQIKDIMDKDFDKL 84 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHH
Confidence 466777777777777766777 677665 3556666
No 303
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=46.05 E-value=2.5e+02 Score=26.04 Aligned_cols=37 Identities=8% Similarity=0.148 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 177 QLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 177 el~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
++...+......-.-....+.++.++.++.++.+.+.
T Consensus 281 ~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 281 ELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEM 317 (359)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444555555555555555444
No 304
>PRK00106 hypothetical protein; Provisional
Probab=46.04 E-value=3e+02 Score=27.00 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 178 LETADAHVIALQKQSADLLLEYDRLLE 204 (218)
Q Consensus 178 l~~~~~d~~aLKKQae~l~~EYdrL~~ 204 (218)
+...+.+++..+++.+...++|+.+.+
T Consensus 127 Le~kekeLe~reeeLee~~~~~~~~~~ 153 (535)
T PRK00106 127 LESKEQSLTDKSKHIDEREEQVEKLEE 153 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444433
No 305
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=45.95 E-value=3.4e+02 Score=27.59 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhc
Q 027820 201 RLLEDNQNLQKQAQ 214 (218)
Q Consensus 201 rL~~e~~~l~~~l~ 214 (218)
|+-+|+..++..+.
T Consensus 605 rleEE~e~L~~kle 618 (698)
T KOG0978|consen 605 RLEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 306
>PLN02678 seryl-tRNA synthetase
Probab=45.88 E-value=1.7e+02 Score=28.01 Aligned_cols=17 Identities=6% Similarity=0.001 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhc
Q 027820 105 IDRMHHYLTKLIRLRSN 121 (218)
Q Consensus 105 I~R~~~li~~l~~l~~~ 121 (218)
|.++..+=.+...+..+
T Consensus 32 id~il~ld~~~r~l~~~ 48 (448)
T PLN02678 32 VDEVIALDKEWRQRQFE 48 (448)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666655555555444
No 307
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=45.85 E-value=2.7e+02 Score=26.40 Aligned_cols=26 Identities=19% Similarity=0.329 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 91 EASLIGFTLFLGFIIDRMHHYLTKLI 116 (218)
Q Consensus 91 n~YLtGF~LFL~lvI~R~~~li~~l~ 116 (218)
-..|-.|.+++|++.+=++.-|....
T Consensus 5 i~qlInFlIl~~lL~kfl~~Pi~~~l 30 (445)
T PRK13428 5 IGQLIGFAVIVFLVWRFVVPPVRRLM 30 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888876555555454444
No 308
>PRK02119 hypothetical protein; Provisional
Probab=45.51 E-value=1.1e+02 Score=21.70 Aligned_cols=29 Identities=7% Similarity=0.083 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
.-++.|-+..-..+++-|+|......+.+
T Consensus 23 ~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 23 NLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444433333
No 309
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=45.47 E-value=1.9e+02 Score=25.30 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 178 LETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 178 l~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
..+++.+.+..-++.+.--+.||+.+.|.+.++.+.+
T Consensus 116 ~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ 152 (253)
T cd07676 116 GRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFE 152 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777778888888777776554
No 310
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=45.36 E-value=2.9e+02 Score=26.64 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027820 179 ETADAHVIALQKQSADL 195 (218)
Q Consensus 179 ~~~~~d~~aLKKQae~l 195 (218)
...+..+..|+.|..++
T Consensus 431 ~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 431 GSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 33344444444444444
No 311
>PRK14147 heat shock protein GrpE; Provisional
Probab=44.98 E-value=29 Score=28.79 Aligned_cols=21 Identities=19% Similarity=0.006 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027820 190 KQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 190 KQae~l~~EYdrL~~e~~~l~ 210 (218)
++.+.+...|-|+..|.++.+
T Consensus 32 ~e~~elkd~~lR~~Ad~eN~r 52 (172)
T PRK14147 32 SEIALVKADALRERADLENQR 52 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444433
No 312
>smart00340 HALZ homeobox associated leucin zipper.
Probab=44.89 E-value=67 Score=20.70 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 182 DAHVIALQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
+.|-+-||+=++.|..|--||..|.++|+.
T Consensus 4 EvdCe~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 4 EVDCELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457778888888888888888888887764
No 313
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=44.85 E-value=5.2e+02 Score=29.38 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQS 192 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQa 192 (218)
.+..+..++-.....+++++.++++||+.-
T Consensus 725 ~~~~~s~eL~~a~~k~~~le~ev~~LKqE~ 754 (1822)
T KOG4674|consen 725 TVHTLSQELLSANEKLEKLEAELSNLKQEK 754 (1822)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555443
No 314
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=44.46 E-value=1e+02 Score=30.41 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLL-EYDRLLEDNQ 207 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~-EYdrL~~e~~ 207 (218)
+.+++++.++++.+++++..+.++..+.++...+.. .|+.+..+.+
T Consensus 215 ~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 261 (646)
T PRK05771 215 ELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELE 261 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666555555544 4455544433
No 315
>PRK14158 heat shock protein GrpE; Provisional
Probab=44.24 E-value=70 Score=27.12 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027820 189 QKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 189 KKQae~l~~EYdrL~~e~~~l~~ 211 (218)
+++.+.+...|-|+..|.++.+.
T Consensus 53 e~e~~el~d~~lR~~AefeN~Rk 75 (194)
T PRK14158 53 EAEAAANWDKYLRERADLENYRK 75 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444433
No 316
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=44.19 E-value=21 Score=34.46 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKD 175 (218)
Q Consensus 163 e~~kLk~el~~~~ 175 (218)
++++|++||++++
T Consensus 32 kie~L~kql~~Lk 44 (489)
T PF11853_consen 32 KIEALKKQLEELK 44 (489)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555444443
No 317
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=44.03 E-value=91 Score=26.62 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027820 183 AHVIALQKQSADLLLEYDRLLE 204 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~ 204 (218)
.+++++|+|......-||-|..
T Consensus 73 anL~~lr~Ql~emee~~~~llr 94 (211)
T COG3167 73 ANLEALRAQLAEMEERFDILLR 94 (211)
T ss_pred hchHHHHHHHHHHHHHHHHHHH
Confidence 5677777877777777776643
No 318
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=43.69 E-value=1.7e+02 Score=28.34 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 027820 164 LKKLKSECEQKDKQLETADAHVIALQKQSAD-LLLEY 199 (218)
Q Consensus 164 ~~kLk~el~~~~kel~~~~~d~~aLKKQae~-l~~EY 199 (218)
..++..++.+..-.+...-.....||+++|. +++-|
T Consensus 462 r~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ISk~y 498 (507)
T PF05600_consen 462 RQEAQEEQQELEPKLDALVERTRELQKQIEADISKRY 498 (507)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444444444444455556666665 44444
No 319
>PRK00846 hypothetical protein; Provisional
Probab=43.62 E-value=1.2e+02 Score=21.85 Aligned_cols=6 Identities=33% Similarity=0.567 Sum_probs=2.2
Q ss_pred HHHHHH
Q 027820 164 LKKLKS 169 (218)
Q Consensus 164 ~~kLk~ 169 (218)
+.+|+.
T Consensus 15 i~~LE~ 20 (77)
T PRK00846 15 LVELET 20 (77)
T ss_pred HHHHHH
Confidence 333333
No 320
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=43.51 E-value=66 Score=24.36 Aligned_cols=16 Identities=25% Similarity=0.005 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 027820 182 DAHVIALQKQSADLLL 197 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~ 197 (218)
+...+.|+.+.+.++.
T Consensus 47 ~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 47 KARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 3444455555555544
No 321
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=43.47 E-value=1.1e+02 Score=25.77 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSA 193 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae 193 (218)
.++++|+.++++.+..+.++.++++.++++.+
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~ 74 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFENLRKRTE 74 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777766677777777777776544
No 322
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=43.40 E-value=1.8e+02 Score=23.74 Aligned_cols=20 Identities=0% Similarity=0.074 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027820 182 DAHVIALQKQSADLLLEYDR 201 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdr 201 (218)
+.+++-+.+=++++..+|..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~ 128 (155)
T PRK06569 109 NQNIEDINLAAKQFRTNKSE 128 (155)
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 45666666667777777754
No 323
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=43.38 E-value=3e+02 Score=26.27 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=22.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 027820 155 EEISTLSVNLKKLKSECEQKDK-------QLETADAHVIALQKQSAD 194 (218)
Q Consensus 155 ~e~~~l~~e~~kLk~el~~~~k-------el~~~~~d~~aLKKQae~ 194 (218)
+-+.++..++-+++.++..... ++...+..+.+|++|++.
T Consensus 286 ~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~ 332 (434)
T PRK15178 286 QLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGE 332 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHH
Confidence 3455566666666666654422 233445666677666654
No 324
>PRK11281 hypothetical protein; Provisional
Probab=42.98 E-value=1.6e+02 Score=31.61 Aligned_cols=55 Identities=13% Similarity=0.156 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
+...+.++..++.+..+++...+.++-++..|.|.-++.-..-....++++.++.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~ 180 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLK 180 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566677888888888888888888888888888888875555556666665554
No 325
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=42.95 E-value=1.1e+02 Score=21.20 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 164 LKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 164 ~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
++++...+...+......+.++..+-+|.+.+
T Consensus 15 l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 15 LDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444555555554444
No 326
>PRK00295 hypothetical protein; Provisional
Probab=42.95 E-value=1.1e+02 Score=21.24 Aligned_cols=31 Identities=19% Similarity=0.123 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
.-++.|-+..-..+++-|+|......+.+++
T Consensus 19 ~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl 49 (68)
T PRK00295 19 DTIQALNDVLVEQQRVIERLQLQMAALIKRQ 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333
No 327
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=42.83 E-value=77 Score=26.47 Aligned_cols=61 Identities=16% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 027820 154 QEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGYK 217 (218)
Q Consensus 154 ~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~~ 217 (218)
..+..+...+.++++..-....+.+..++.+++.++++.+...++|++..+. ++..++.|+
T Consensus 141 ~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~---~k~E~~rf~ 201 (236)
T PF09325_consen 141 EKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISEN---IKKELERFE 201 (236)
T ss_pred HHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
No 328
>PRK04325 hypothetical protein; Provisional
Probab=42.72 E-value=1.2e+02 Score=21.48 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
+...+.-.+.-++.+++.+-..+.+++.|++|...+
T Consensus 14 LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 14 LEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555566666666667777777776666
No 329
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.68 E-value=3e+02 Score=28.66 Aligned_cols=55 Identities=22% Similarity=0.319 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
+..++..|...|...+-.+-+.+..++.+.||.+---.|-|.|..+.+++|..+.
T Consensus 449 Ln~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~ 503 (1118)
T KOG1029|consen 449 LNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQ 503 (1118)
T ss_pred HHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334445667777888888777777777777766666554
No 330
>PF07136 DUF1385: Protein of unknown function (DUF1385); InterPro: IPR010787 This family contains a number of hypothetical bacterial proteins of unknown function approximately 300 residues in length. Some family members are predicted to be metal-dependent.
Probab=42.60 E-value=87 Score=27.40 Aligned_cols=58 Identities=9% Similarity=0.071 Sum_probs=30.7
Q ss_pred HHHHHHHHhcccc-h--hHHHH-HHHHHHhhhCCcchhHHHHHHHHHHHHHhhHHHHHHhhhc
Q 027820 12 EGALAFLLLVKIG-P--LRELV-IKSLDQLKMGKGPATVKTIAGTMFVILLSSLMSIVKIQNK 70 (218)
Q Consensus 12 Em~~~~lL~lP~~-P--~rk~~-~~~~~~~~~~~~~~~~~~~~~~l~llF~Dsv~~~~k~~~~ 70 (218)
=+++.+.+++|.. - .++.. ...+..+..|-.+.++-+.. +.++-+..-++|+.+||+-
T Consensus 52 ~~~i~lF~~lP~~l~~~~~~~~~~~~~~~l~eG~ir~~if~~Y-i~~is~~~dI~Rvf~YHGA 113 (236)
T PF07136_consen 52 ALAIGLFVVLPTFLAGLLKRFISSSFLFNLIEGLIRLAIFLGY-IWLISRMKDIKRVFQYHGA 113 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHcch
Confidence 3556667777762 1 12222 33333333333344443333 4455566778999999974
No 331
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=42.39 E-value=1.8e+02 Score=23.53 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH-HHHHHHHHHHhHh
Q 027820 94 LIGFTLFLGFIIDRMHHYLTKLIRLRSNAGSSK-EEVEQLQKEKMQL 139 (218)
Q Consensus 94 LtGF~LFL~lvI~R~~~li~~l~~l~~~~~a~~-~~~kq~~~~~~~~ 139 (218)
|+-.-|.+...=.++-.+-.++...+.-.+... -.+.|++-++..+
T Consensus 8 i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l 54 (177)
T PF13870_consen 8 ISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQL 54 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 333334444444444444455555544444442 2455555554444
No 332
>PRK14154 heat shock protein GrpE; Provisional
Probab=42.29 E-value=62 Score=27.76 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 027820 164 LKKLKSECEQ 173 (218)
Q Consensus 164 ~~kLk~el~~ 173 (218)
++.|+.++++
T Consensus 54 ~~~l~~el~~ 63 (208)
T PRK14154 54 REKLEGQLTR 63 (208)
T ss_pred hhhHHHHHHH
Confidence 4444444433
No 333
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=42.20 E-value=1.2e+02 Score=21.29 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=15.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 157 ISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQ 191 (218)
Q Consensus 157 ~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQ 191 (218)
+..+..|-+-.-..+..+-.+..+...++++++++
T Consensus 28 ~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 28 NKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443344443333444444455555554
No 334
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=42.19 E-value=71 Score=23.61 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 166 KLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 166 kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
+|+.+++..++++...+..+..|+-|...+
T Consensus 5 ~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l 34 (86)
T PF12958_consen 5 ELQAEIEKAEKKLEQAEHKIKQLENRKKKL 34 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333
No 335
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=42.16 E-value=3.4e+02 Score=26.48 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
..+..+...+...+..+......++.|..+-+....+|+.+.+.|..+++++-
T Consensus 105 ~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll 157 (569)
T PRK04778 105 HEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLL 157 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666777777788888888888899999999999999988775
No 336
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=42.16 E-value=1.2e+02 Score=25.44 Aligned_cols=31 Identities=16% Similarity=0.416 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
.=...||+-.+.|..|+..+.++...+++++
T Consensus 25 rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~ 55 (204)
T PRK00373 25 RGHKLLKDKRDELIMEFFDILDEAKKLREEV 55 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 337
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=42.03 E-value=3e+02 Score=25.88 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHh---------------HhhhHhhhhhHHHHHHHHHhhhhHHHHHHH
Q 027820 103 FIIDRMHHYLTKLIRLRSNAGSSKEEVEQLQKEKM---------------QLKDKEEKASKELKRLQEEISTLSVNLKKL 167 (218)
Q Consensus 103 lvI~R~~~li~~l~~l~~~~~a~~~~~kq~~~~~~---------------~~~~~~~~~~~~~~~~~~e~~~l~~e~~kL 167 (218)
....++..+-.++...+.+..++.+.+.++++... .+...-..-..+............-++..+
T Consensus 201 ~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l 280 (498)
T TIGR03007 201 DYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIAT 280 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHH
Q ss_pred HHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027820 168 KSECEQKDKQLETA----------------------------DAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 168 k~el~~~~kel~~~----------------------------~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
+.++...+..+.+. +.++++++.|.+++..+++++..+...+-+....+
T Consensus 281 ~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el 357 (498)
T TIGR03007 281 KREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAEL 357 (498)
T ss_pred HHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
No 338
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=41.89 E-value=1.1e+02 Score=23.48 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 182 DAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
++.++.++++.+.++++.+++.++.+.++..++
T Consensus 93 ~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 93 DKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555554443
No 339
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=41.84 E-value=1.8e+02 Score=23.32 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 161 SVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYD 200 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYd 200 (218)
..+++.|+.++.....++...+.++.++++.-+++.++-.
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq 90 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQ 90 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555544444433
No 340
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=41.77 E-value=4.1e+02 Score=27.34 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027820 93 SLIGFTLFLGFIIDRMHHY 111 (218)
Q Consensus 93 YLtGF~LFL~lvI~R~~~l 111 (218)
.|-.|++.|-.++..-.++
T Consensus 538 fieE~s~tLdwIls~~~SL 556 (769)
T PF05911_consen 538 FIEEFSLTLDWILSNCFSL 556 (769)
T ss_pred HHHHHHHHHHHHHHccchH
Confidence 4445555555555554444
No 341
>PRK14144 heat shock protein GrpE; Provisional
Probab=41.75 E-value=1.2e+02 Score=25.73 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSA 193 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae 193 (218)
.+..++++++.++++....+-+..+|.+..||..+
T Consensus 49 ~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~ 83 (199)
T PRK14144 49 ALEEQLTLAEQKAHENWEKSVRALAELENVRRRME 83 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666655566666666666666443
No 342
>PRK14141 heat shock protein GrpE; Provisional
Probab=41.73 E-value=1e+02 Score=26.38 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSAD 194 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~ 194 (218)
+..++++|+.++++.+..+.+..+|.+.+||..+.
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~k 70 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQR 70 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777776666777777777777775543
No 343
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=41.61 E-value=59 Score=25.95 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQK 190 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKK 190 (218)
+++.++.++++..+.+.+...+++.+++
T Consensus 19 ~l~~l~~~~~~l~~~~~r~~ae~en~~~ 46 (165)
T PF01025_consen 19 ELEELEKEIEELKERLLRLQAEFENYRK 46 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333334444443333
No 344
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=41.58 E-value=32 Score=26.51 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027820 184 HVIALQKQSADLLLEYD 200 (218)
Q Consensus 184 d~~aLKKQae~l~~EYd 200 (218)
+++.+++|.+.+..+++
T Consensus 24 ~l~~~~~~~~~~~~~l~ 40 (144)
T PF04350_consen 24 NLEELKKQLEQLEQQLE 40 (144)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 345
>PRK00106 hypothetical protein; Provisional
Probab=41.56 E-value=3.5e+02 Score=26.52 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 171 CEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 171 l~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
|+.+.+++.+.+.+++..++..+...+++++...+.+.+.
T Consensus 113 LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~ 152 (535)
T PRK00106 113 LDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLE 152 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555666666666666666666666665544
No 346
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=41.53 E-value=2e+02 Score=23.60 Aligned_cols=26 Identities=4% Similarity=0.141 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHV 185 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~ 185 (218)
.++.++....+|+-+..--.+++.+.
T Consensus 89 vRkkID~vNreLkpl~~~cqKKEkEy 114 (159)
T PF04949_consen 89 VRKKIDSVNRELKPLGQSCQKKEKEY 114 (159)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444444444443333333333333
No 347
>PRK14162 heat shock protein GrpE; Provisional
Probab=41.43 E-value=76 Score=26.89 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 188 LQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 188 LKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
++++.+.+...|-|+..|.++.+.
T Consensus 51 l~~e~~elkd~~lR~~AEfeN~rk 74 (194)
T PRK14162 51 LKAKNKDLEDKYLRSQAEIQNMQN 74 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 348
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=41.33 E-value=1e+02 Score=26.26 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLET----ADAHVIALQKQSADLLLE 198 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~----~~~d~~aLKKQae~l~~E 198 (218)
.|+.|+.+|+.++.+.+++... ...+..-+|+|.|+|.+.
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~Y 143 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDY 143 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHH
Confidence 4555555555555555444333 122334569999998664
No 349
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=41.24 E-value=1.4e+02 Score=27.05 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 027820 161 SVNLKKLKSECE 172 (218)
Q Consensus 161 ~~e~~kLk~el~ 172 (218)
+.|+++||.+|.
T Consensus 88 etEI~eLksQL~ 99 (305)
T PF15290_consen 88 ETEIDELKSQLA 99 (305)
T ss_pred HHHHHHHHHHHH
Confidence 345555555553
No 350
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.22 E-value=4.4e+02 Score=27.51 Aligned_cols=11 Identities=18% Similarity=0.157 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 027820 182 DAHVIALQKQS 192 (218)
Q Consensus 182 ~~d~~aLKKQa 192 (218)
+.+.+.||-|.
T Consensus 705 ~~q~~~Lk~qL 715 (970)
T KOG0946|consen 705 KDQLDLLKNQL 715 (970)
T ss_pred HHHHHHHHHHh
Confidence 33333344333
No 351
>COG1422 Predicted membrane protein [Function unknown]
Probab=41.20 E-value=1.5e+02 Score=25.32 Aligned_cols=11 Identities=0% Similarity=0.111 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 027820 106 DRMHHYLTKLI 116 (218)
Q Consensus 106 ~R~~~li~~l~ 116 (218)
.-+.+++..+.
T Consensus 54 avi~gl~~~i~ 64 (201)
T COG1422 54 AVITGLYITIL 64 (201)
T ss_pred HHHHHHHHHHH
Confidence 33334443333
No 352
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=41.01 E-value=1.4e+02 Score=24.03 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 181 ADAHVIALQKQSADLLLEYDRLLEDNQ 207 (218)
Q Consensus 181 ~~~d~~aLKKQae~l~~EYdrL~~e~~ 207 (218)
.+.|++.+..|.+.|..--++|.|+.+
T Consensus 43 l~~qv~gi~~eT~~Ll~K~N~L~eDvq 69 (139)
T COG4768 43 LTSQVDGITHETEELLHKTNTLAEDVQ 69 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666666666655544
No 353
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=40.59 E-value=2.1e+02 Score=23.57 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 027820 81 DQVLWRTHLLEASLIGFTLFLGFI----IDRMHHYLT 113 (218)
Q Consensus 81 ~~~~~~~rrfn~YLtGF~LFL~lv----I~R~~~li~ 113 (218)
|-..|-.+.|+.-|+ |.++++++ .+++..++.
T Consensus 26 d~~t~~~q~~~~lI~-F~iL~~ll~k~l~~PI~~~l~ 61 (181)
T PRK13454 26 DFSTFPNQIFWLLVT-LVAIYFVLTRVALPRIGAVLA 61 (181)
T ss_pred cHHhcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 333455677776555 44444433 455666663
No 354
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=40.40 E-value=3.1e+02 Score=25.48 Aligned_cols=11 Identities=18% Similarity=0.144 Sum_probs=5.0
Q ss_pred HHHHHHHHhHh
Q 027820 129 VEQLQKEKMQL 139 (218)
Q Consensus 129 ~kq~~~~~~~~ 139 (218)
+++++=-+..+
T Consensus 128 ykkaMvsnaQL 138 (405)
T KOG2010|consen 128 YKKAMVSNAQL 138 (405)
T ss_pred HHHHHHHHHhh
Confidence 55555434433
No 355
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=40.27 E-value=3.3e+02 Score=25.89 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 165 KKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQN 208 (218)
Q Consensus 165 ~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~ 208 (218)
.+|...+++.++-+.+.+.++.+-++..+.|...=.+|..+...
T Consensus 199 ~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias 242 (420)
T COG4942 199 AKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIAS 242 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33443344443444444444444444444444444444443333
No 356
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=40.16 E-value=9.4 Score=38.20 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 179 ETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 179 ~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
.+.+-+...|+...+.+..|.+++..+.+.++..
T Consensus 387 ~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~ 420 (713)
T PF05622_consen 387 DKLEFENKQLEEKLEALEEEKERLQEERDSLRET 420 (713)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666666666666666666666655543
No 357
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=39.88 E-value=2.3e+02 Score=23.87 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 169 SECEQKDKQLETADAHVIALQKQSA 193 (218)
Q Consensus 169 ~el~~~~kel~~~~~d~~aLKKQae 193 (218)
..+++++.++.+.+..+..|++-++
T Consensus 89 ~klk~~~~el~k~~~~l~~L~~L~~ 113 (194)
T PF15619_consen 89 RKLKDKDEELLKTKDELKHLKKLSE 113 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444
No 358
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=39.88 E-value=1.4e+02 Score=29.77 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=30.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 153 LQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSAD 194 (218)
Q Consensus 153 ~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~ 194 (218)
..++++..+.++|+||.++..+.-+|...+.+++.-+.|.+.
T Consensus 105 l~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~E 146 (907)
T KOG2264|consen 105 LNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEE 146 (907)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 455667777888888888888878888888888554444443
No 359
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=39.86 E-value=4e+02 Score=26.68 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027820 196 LLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 196 ~~EYdrL~~e~~~l~~~ 212 (218)
+.+|.+|..|.+..++.
T Consensus 375 ~~e~~~L~Re~~~~~~~ 391 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQL 391 (754)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55566666665554443
No 360
>PRK04406 hypothetical protein; Provisional
Probab=39.78 E-value=1.4e+02 Score=21.31 Aligned_cols=33 Identities=6% Similarity=0.128 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 182 DAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
+.-++.|-+..-..+++-|+|......+.+++.
T Consensus 24 E~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 24 EQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455544444555555555555444444443
No 361
>PRK02793 phi X174 lysis protein; Provisional
Probab=39.43 E-value=1.4e+02 Score=21.10 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 161 SVNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
...+.-.+.-++.+++.+-..+.+++.|++|...+
T Consensus 14 E~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 14 ESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455556666666667777777776666
No 362
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=39.20 E-value=2.1e+02 Score=26.99 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhc
Q 027820 105 IDRMHHYLTKLIRLRSN 121 (218)
Q Consensus 105 I~R~~~li~~l~~l~~~ 121 (218)
+.++..+=.+...+..+
T Consensus 27 vd~i~~ld~~~r~l~~~ 43 (425)
T PRK05431 27 VDELLELDEERRELQTE 43 (425)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555544444444444
No 363
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=39.19 E-value=1e+02 Score=23.22 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 027820 187 ALQKQSADLLLEYDRL 202 (218)
Q Consensus 187 aLKKQae~l~~EYdrL 202 (218)
.+.++.+.+..+++.+
T Consensus 105 ~l~~~~~~~~~~~~~l 120 (129)
T cd00890 105 KLEKQLEKLQDQITEL 120 (129)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 364
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=39.17 E-value=1.4e+02 Score=21.59 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027820 182 DAHVIALQKQSADLLLEYDRLLE 204 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~ 204 (218)
+.+++.++++.+.+.+.+..+.+
T Consensus 75 ~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 75 EKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444433
No 365
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=38.90 E-value=5.2e+02 Score=27.67 Aligned_cols=36 Identities=25% Similarity=0.220 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 179 ETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 179 ~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.....+++.++|-.++=..|-.||....++++.|..
T Consensus 484 ~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~k 519 (1195)
T KOG4643|consen 484 EELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYK 519 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555655555555555566555555555544
No 366
>PF04483 DUF565: Protein of unknown function (DUF565); InterPro: IPR007572 This family represents Ycf20, it is found in cyanobacteria and is also encoded in plant and algal chloroplasts; its function is unknown. As the family is exclusively found in phototrophic organisms it may therefore play a role in photosynthesis.
Probab=38.74 E-value=1.3e+02 Score=20.57 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccchh-HHHHHHHHHHhhhCCcchhHHHHHHHHHHHHHhhHH
Q 027820 3 QLLFLVLFAEGALAFLLLVKIGPL-RELVIKSLDQLKMGKGPATVKTIAGTMFVILLSSLM 62 (218)
Q Consensus 3 ~lvf~~L~~Em~~~~lL~lP~~P~-rk~~~~~~~~~~~~~~~~~~~~~~~~l~llF~Dsv~ 62 (218)
.....++.+|.+..+.=.-|. +. ++....+++.++- |++--||+||..
T Consensus 9 ~a~~iv~~~E~i~~l~Y~~~~-~~~~~~~~~~lN~~Ki-----------Gl~YgLfleAFK 57 (60)
T PF04483_consen 9 AAAIIVLFIEVISRLRYSKPK-KKRKSLLVELLNNFKI-----------GLLYGLFLEAFK 57 (60)
T ss_pred HHHHHHHHHHHHHHHhhcccc-ccccchHHHHHHHHHH-----------HHHHHHHHHHHh
Confidence 345566777877766555554 43 3445666776654 445566999863
No 367
>PRK14156 heat shock protein GrpE; Provisional
Probab=38.65 E-value=1.4e+02 Score=24.92 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSAD 194 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~ 194 (218)
+..++++++.+++..+..+.++.+|.+..||..+.
T Consensus 32 ~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~r 66 (177)
T PRK14156 32 EKSELELANERADEFENKYLRAHAEMQNIQRRANE 66 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777666777777777777765543
No 368
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=38.61 E-value=2.3e+02 Score=23.59 Aligned_cols=10 Identities=10% Similarity=0.159 Sum_probs=3.8
Q ss_pred HHHHHHHHHh
Q 027820 111 YLTKLIRLRS 120 (218)
Q Consensus 111 li~~l~~l~~ 120 (218)
+-.++..++.
T Consensus 74 l~~~~~~~~~ 83 (188)
T PF03962_consen 74 LQKEIEELEK 83 (188)
T ss_pred HHHHHHHHHH
Confidence 3333444333
No 369
>PRK14146 heat shock protein GrpE; Provisional
Probab=38.58 E-value=83 Score=27.06 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSA 193 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae 193 (218)
+..++++++.+++..+..+-+..+|.+..||..+
T Consensus 59 l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~ 92 (215)
T PRK14146 59 LQKELDNAKKEIESLKDSWARERAEFQNFKRRSA 92 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666666666666544
No 370
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=38.54 E-value=1.8e+02 Score=22.59 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
.++.+.++...+.+.++.+.+..+.+.
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 109 ALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 371
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=38.50 E-value=4.5e+02 Score=26.84 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
+...+..+.....-++++.+.|+..-|+|.+...++-.+|-+....+++.+++
T Consensus 500 Ekk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles 552 (786)
T PF05483_consen 500 EKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELES 552 (786)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555556666666676666666666666666666666654
No 372
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=38.17 E-value=2.9e+02 Score=24.54 Aligned_cols=78 Identities=17% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhhhHhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q 027820 126 KEEVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSECEQKDKQLETADA-----------HVIALQKQSAD 194 (218)
Q Consensus 126 ~~~~kq~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~-----------d~~aLKKQae~ 194 (218)
.+.+++++.+....++..+.+.. .+..+++.|+.+|.+..+++.-.-. .|..|..|.++
T Consensus 62 ~~~l~~ak~eLqe~eek~e~~l~----------~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~ 131 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEESKLS----------KLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQ 131 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027820 195 LLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 195 l~~EYdrL~~e~~~l~~~l 213 (218)
+...--.-+++.++.....
T Consensus 132 lk~~qqdEldel~e~~~~e 150 (258)
T PF15397_consen 132 LKDSQQDELDELNEMRQME 150 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 373
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=38.02 E-value=3.1e+02 Score=24.91 Aligned_cols=87 Identities=16% Similarity=0.284 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhHhhhHhhhhhHHHHHHHHHhhhhHHHHHHHHHHHH---
Q 027820 96 GFTLFLGFIIDRMHHYLTKLIRLRSNAGSSKEEVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSECE--- 172 (218)
Q Consensus 96 GF~LFL~lvI~R~~~li~~l~~l~~~~~a~~~~~kq~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~kLk~el~--- 172 (218)
-|.=.-..++.|=++|+.++.+.++++ |+-+..-++.++... ..++.... --..++.+|..+|+
T Consensus 190 ~F~~l~~cL~dREvaLl~EmdkVK~EA------meiL~aRqkkAeeLk-rltd~A~~------MsE~Ql~ELRadIK~fv 256 (302)
T PF07139_consen 190 TFAELQSCLMDREVALLAEMDKVKAEA------MEILDARQKKAEELK-RLTDRASQ------MSEEQLAELRADIKHFV 256 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH-HHHHHHhh------cCHHHHHHHHHHHHHHh
Confidence 455556678999999999999987762 333333222222211 01111000 11234455555553
Q ss_pred ---HHHHHHHHHHH---HHHHHHHHHHHH
Q 027820 173 ---QKDKQLETADA---HVIALQKQSADL 195 (218)
Q Consensus 173 ---~~~kel~~~~~---d~~aLKKQae~l 195 (218)
+.+++|-++.+ |.+.|++++.++
T Consensus 257 s~rk~de~lg~~~rf~~d~~~l~~~i~~~ 285 (302)
T PF07139_consen 257 SERKYDEELGRAARFTCDPEQLKKSIMSF 285 (302)
T ss_pred hhhhhHHHHhHhhhcccCHHHHHHHHHhc
Confidence 34555555543 777888877664
No 374
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=37.99 E-value=17 Score=35.04 Aligned_cols=18 Identities=33% Similarity=0.792 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027820 91 EASLIGFTLFLGFIIDRM 108 (218)
Q Consensus 91 n~YLtGF~LFL~lvI~R~ 108 (218)
|.||.||++|+.+.|++-
T Consensus 408 Nl~IlG~Sif~gLsip~y 425 (510)
T KOG1292|consen 408 NLFILGFSIFLGLSIPQY 425 (510)
T ss_pred chhhhhHHHHHhccHHHH
Confidence 999999999999999874
No 375
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=37.90 E-value=5.3e+02 Score=27.49 Aligned_cols=46 Identities=11% Similarity=0.124 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 170 ECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 170 el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
.+...++++..+.++.+.+|++++..++.-.+..++...+|..++.
T Consensus 312 k~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~ 357 (1072)
T KOG0979|consen 312 KLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQE 357 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3445556666777788888888888888877777777777776653
No 376
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=37.88 E-value=1.5e+02 Score=26.12 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027820 184 HVIALQKQSADLLLEYDR 201 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdr 201 (218)
+++..+.+.+....+|+|
T Consensus 116 ~~~~a~~~l~~a~~~~~r 133 (334)
T TIGR00998 116 KLEQAREKLLQAELDLRR 133 (334)
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 333333333333333333
No 377
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=37.76 E-value=1.1e+02 Score=19.47 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=8.5
Q ss_pred HHHHHHHH-HHHHHHHHHHHHH
Q 027820 164 LKKLKSEC-EQKDKQLETADAH 184 (218)
Q Consensus 164 ~~kLk~el-~~~~kel~~~~~d 184 (218)
.+++|.|+ ++..+|+.+.+.+
T Consensus 5 le~~KqEIL~EvrkEl~K~K~E 26 (40)
T PF08776_consen 5 LERLKQEILEEVRKELQKVKEE 26 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433 3334444444333
No 378
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=37.70 E-value=3e+02 Score=25.87 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 027820 104 IIDRMHHYLTKLIRLRSN 121 (218)
Q Consensus 104 vI~R~~~li~~l~~l~~~ 121 (218)
.+.++..+=.+...+..+
T Consensus 28 ~vd~i~~ld~~~r~~~~~ 45 (418)
T TIGR00414 28 DLEKLIALDDERKKLLSE 45 (418)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 356666666666666555
No 379
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=37.67 E-value=1.2e+02 Score=20.46 Aligned_cols=30 Identities=27% Similarity=0.548 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLE 204 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~ 204 (218)
.=+..|+..|+++++|+ .+++++||..+++
T Consensus 11 ~yI~~Lk~kLd~Kk~Ei-------------l~~ln~EY~kiLk 40 (56)
T PF08112_consen 11 KYISILKSKLDEKKSEI-------------LSNLNMEYEKILK 40 (56)
T ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH
Confidence 34556666666654332 4567777776654
No 380
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.55 E-value=1.6e+02 Score=21.56 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.++..|+..++..=+.++.. ..+.+..|.+.+.+-=..|.+++..|+.+++
T Consensus 49 ~eL~~LE~~Le~aL~~VR~r--K~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 49 KELQQLEQQLESALKRVRSR--KDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56667777776543333332 2234566666666666677777777777654
No 381
>PRK04325 hypothetical protein; Provisional
Probab=37.22 E-value=1.5e+02 Score=20.99 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
.+.+|+..+.=. +.-++.|-+..-..+++-|+|......+.+++
T Consensus 10 Ri~~LE~klAfQ-------E~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 10 RITELEIQLAFQ-------EDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544433 33444444444444444444444444444433
No 382
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=37.16 E-value=3.8e+02 Score=25.65 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027820 187 ALQKQSADLLLEYDRLLEDNQN 208 (218)
Q Consensus 187 aLKKQae~l~~EYdrL~~e~~~ 208 (218)
.++..++.+..+=++..+++..
T Consensus 215 e~~~~~~~~~e~~~~~~~ey~~ 236 (447)
T KOG2751|consen 215 ELEFKAERLNEEEDQYWREYNN 236 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443
No 383
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.08 E-value=1.6e+02 Score=21.14 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=17.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 156 EISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEY 199 (218)
Q Consensus 156 e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EY 199 (218)
|++.+++++..|..+..... ...++|....+.+..|-
T Consensus 26 EieELKEknn~l~~e~q~~q-------~~reaL~~eneqlk~e~ 62 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQ-------HQREALERENEQLKEEQ 62 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 44445555555555555432 34444444444444443
No 384
>PHA01750 hypothetical protein
Probab=37.04 E-value=1.5e+02 Score=20.96 Aligned_cols=10 Identities=50% Similarity=0.700 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 027820 163 NLKKLKSECE 172 (218)
Q Consensus 163 e~~kLk~el~ 172 (218)
|+..|+.|++
T Consensus 43 ELdNL~~ei~ 52 (75)
T PHA01750 43 ELDNLKTEIE 52 (75)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 385
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=37.03 E-value=2.9e+02 Score=24.32 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 177 QLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 177 el~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
..++++...+..-++.+.--+.||+.+.|-+..+..
T Consensus 114 ~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k 149 (252)
T cd07675 114 EGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQS 149 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555656666666666677776666666555
No 386
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.98 E-value=31 Score=24.62 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 190 KQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 190 KQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
++.++....|+||.++|++|.+...
T Consensus 10 s~Lk~~dahF~rLfd~hn~LDd~I~ 34 (72)
T COG2841 10 SKLKANDAHFARLFDKHNELDDRIK 34 (72)
T ss_pred HHHhccchHHHHHHHHHhHHHHHHH
Confidence 5566677789999999998877654
No 387
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=36.91 E-value=1.7e+02 Score=23.21 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 171 CEQKDKQLETADAHVIALQKQSADLLLE 198 (218)
Q Consensus 171 l~~~~kel~~~~~d~~aLKKQae~l~~E 198 (218)
+++++.++..++.++..||++.+.+...
T Consensus 96 ~~kLe~e~~~Kdsei~~Lr~~L~~~~~~ 123 (131)
T PF04859_consen 96 VKKLEAELRAKDSEIDRLREKLDELNRA 123 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444556777777766655443
No 388
>PRK10698 phage shock protein PspA; Provisional
Probab=36.79 E-value=2.7e+02 Score=23.80 Aligned_cols=8 Identities=13% Similarity=0.355 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 027820 105 IDRMHHYL 112 (218)
Q Consensus 105 I~R~~~li 112 (218)
+.|+..+|
T Consensus 4 f~Rl~~ii 11 (222)
T PRK10698 4 FSRFADIV 11 (222)
T ss_pred HHHHHHHH
Confidence 34444444
No 389
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=36.62 E-value=69 Score=23.17 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAH 184 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d 184 (218)
.+.+|+.+||.+|++.+.+|....++
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677888888887766555554444
No 390
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=36.59 E-value=2e+02 Score=26.77 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL 202 (218)
.+..++++|+..+++.. +.++.+..+++|.+.+.++.+.+
T Consensus 253 ~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~ 292 (406)
T PF02388_consen 253 KLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEA 292 (406)
T ss_dssp HHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443322 34455555556655555554433
No 391
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=36.56 E-value=77 Score=21.81 Aligned_cols=27 Identities=33% Similarity=0.358 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 185 VIALQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 185 ~~aLKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
++.||.|+..|...-.+|-.|++-|+.
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444445455554443
No 392
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=36.37 E-value=2.8e+02 Score=23.81 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 180 TADAHVIALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 180 ~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
+.+.++...-.+.+.-..-||.+++|+++++..
T Consensus 115 k~~k~~~~a~~~leKAK~~Y~~~c~e~Ekar~~ 147 (234)
T cd07652 115 RAEKKVQDAEAAAEKAKARYDSLADDLERVKTG 147 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555555555666666788888888887643
No 393
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=36.17 E-value=1.6e+02 Score=27.33 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
+.+++++++.++++.+..+++.. .-++|.+.+....+++..+.++++.
T Consensus 247 l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 247 LQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556655555544444433 4445555555555555555444443
No 394
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=36.13 E-value=92 Score=23.78 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 027820 177 QLETADAHVIALQKQS 192 (218)
Q Consensus 177 el~~~~~d~~aLKKQa 192 (218)
++...+.+.+.|||-+
T Consensus 86 el~~L~~E~diLKKa~ 101 (121)
T PRK09413 86 LLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333445666777744
No 395
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=36.06 E-value=5.4e+02 Score=27.05 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 179 ETADAHVIALQKQSADLLLEYDRLLEDNQNL 209 (218)
Q Consensus 179 ~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l 209 (218)
+..++...+.++|.+.+..-|..|-.+|..+
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~l 443 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQEHADL 443 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666655565555555544
No 396
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=35.88 E-value=3.1e+02 Score=26.51 Aligned_cols=8 Identities=25% Similarity=0.488 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 027820 97 FTLFLGFI 104 (218)
Q Consensus 97 F~LFL~lv 104 (218)
|.|-.+++
T Consensus 217 ~iLv~lil 224 (575)
T KOG4403|consen 217 FILVVLIL 224 (575)
T ss_pred HHHHHHHH
Confidence 44433333
No 397
>PRK02793 phi X174 lysis protein; Provisional
Probab=35.80 E-value=1.6e+02 Score=20.78 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
..+.+|+..+.=.+ .-++.|-+..-..+++-|+|......+.+++
T Consensus 8 ~Ri~~LE~~lafQe-------~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 8 ARLAELESRLAFQE-------ITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554433 3444444444444444444444444444443
No 398
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=35.69 E-value=1.7e+02 Score=22.56 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=16.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHH
Q 027820 153 LQEEISTLSVNLKKLKSECEQK 174 (218)
Q Consensus 153 ~~~e~~~l~~e~~kLk~el~~~ 174 (218)
..+||+.+.-|++.|+..+.+.
T Consensus 34 l~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 34 LLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5567788888888888888753
No 399
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=35.49 E-value=2.1e+02 Score=22.18 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 166 KLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLE 204 (218)
Q Consensus 166 kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~ 204 (218)
-|+..++..++.+++.+.++..+++|.+.+...-.++..
T Consensus 98 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 98 ILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555555555444444433
No 400
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=35.29 E-value=89 Score=22.55 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027820 181 ADAHVIALQKQSADLLLEYDR 201 (218)
Q Consensus 181 ~~~d~~aLKKQae~l~~EYdr 201 (218)
.+.++.++.+|+-.+..+|-.
T Consensus 14 Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 14 LEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888843
No 401
>PRK09458 pspB phage shock protein B; Provisional
Probab=35.03 E-value=31 Score=24.93 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=12.9
Q ss_pred HHHHHHHHhhHHHHHHhhhc
Q 027820 51 GTMFVILLSSLMSIVKIQNK 70 (218)
Q Consensus 51 ~~l~llF~Dsv~~~~k~~~~ 70 (218)
.+++++|+--++=+..|.+.
T Consensus 10 liiF~ifVaPiWL~LHY~sk 29 (75)
T PRK09458 10 LTIFVLFVAPIWLWLHYRSK 29 (75)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 35556677777777777654
No 402
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.01 E-value=36 Score=26.78 Aligned_cols=16 Identities=31% Similarity=0.783 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 027820 93 SLIGFTLFLGFIIDRM 108 (218)
Q Consensus 93 YLtGF~LFL~lvI~R~ 108 (218)
=+-|.+||++++|+|.
T Consensus 76 GvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 76 GVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556777888888764
No 403
>PF15294 Leu_zip: Leucine zipper
Probab=34.89 E-value=1.5e+02 Score=26.58 Aligned_cols=45 Identities=29% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 153 LQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLL 197 (218)
Q Consensus 153 ~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~ 197 (218)
...++.++..|+++|+..+...++.--..-.+-..++.|...++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 404
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=34.75 E-value=1.8e+02 Score=21.25 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 185 VIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 185 ~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
--+-+-|.+.|.+.|-.++.+|+..|.+-
T Consensus 84 ~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~ 112 (117)
T smart00503 84 DRTRKAQTEKLRKKFKEVMNEFQRLQRKY 112 (117)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34668899999999999999999888754
No 405
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=34.63 E-value=4.4e+02 Score=25.61 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQN 208 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~ 208 (218)
-+..|..-+....|.|.....+-++|+-|.+.....|-+|.++|..
T Consensus 391 ~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 391 TLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3455666666667777778889999999999999999999988874
No 406
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=34.24 E-value=2.6e+02 Score=24.56 Aligned_cols=13 Identities=8% Similarity=-0.043 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 027820 188 LQKQSADLLLEYD 200 (218)
Q Consensus 188 LKKQae~l~~EYd 200 (218)
.+.+.+....+++
T Consensus 151 a~~~~~~a~~~l~ 163 (334)
T TIGR00998 151 ARKALLSAKAALN 163 (334)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 407
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=34.11 E-value=3.6e+02 Score=24.43 Aligned_cols=46 Identities=9% Similarity=0.153 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccc
Q 027820 171 CEQKDKQLETADAHVIALQKQ----SADLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 171 l~~~~kel~~~~~d~~aLKKQ----ae~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
|++..||++..+.-+++||.- =+|.+|.|-..+-.+.+|..-|+++
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsM 168 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSM 168 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHH
Confidence 355566666667777777643 4688999988888888888777765
No 408
>PRK00736 hypothetical protein; Provisional
Probab=34.05 E-value=1.6e+02 Score=20.45 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
.-++.|-+..-..+++-|+|......+.+++
T Consensus 19 ~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 19 KTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 409
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=33.96 E-value=2.5e+02 Score=22.64 Aligned_cols=52 Identities=17% Similarity=0.292 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
..+.+-.++.+....+.....+...+..+...+...=++|.+|..++..-.+
T Consensus 15 ~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae 66 (157)
T PF04136_consen 15 ECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAE 66 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555556666666666666666666666666666666555443
No 410
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=33.94 E-value=1.4e+02 Score=23.66 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSA 193 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae 193 (218)
++.|+.-||.-+-...+-.+.-++.++.|+.|.+
T Consensus 90 lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~ 123 (126)
T PF13118_consen 90 LKNENRFLKEALYSMQELYEEDRKTIELLREQLK 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333444444333333333333455555655554
No 411
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=33.88 E-value=3.6e+02 Score=24.39 Aligned_cols=7 Identities=29% Similarity=0.259 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 027820 182 DAHVIAL 188 (218)
Q Consensus 182 ~~d~~aL 188 (218)
.+-+++|
T Consensus 153 rkRle~L 159 (338)
T KOG3647|consen 153 RKRLEAL 159 (338)
T ss_pred HHHHHHH
Confidence 3333333
No 412
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=33.84 E-value=3.7e+02 Score=24.51 Aligned_cols=51 Identities=8% Similarity=0.052 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhHHH--------HHHhhhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 46 VKTIAGTMFVILLSSLMS--------IVKIQNKGAKLGTMSPMDQVLWRTHLLEASLIGFTLFLG 102 (218)
Q Consensus 46 ~~~~~~~l~llF~Dsv~~--------~~k~~~~~~~~~~~~~~~~~~~~~rrfn~YLtGF~LFL~ 102 (218)
+=.++.+=+|-|.|.... |+++.++.+ |+.+ ..++.+.++-|..-+--|+-
T Consensus 119 cDasALLNlin~Cd~F~~~d~~~v~eVI~~RN~~M-----HS~e-mkvs~~wm~~~~~~i~nll~ 177 (307)
T PF15112_consen 119 CDASALLNLINSCDHFKKYDRKKVREVIKCRNEIM-----HSSE-MKVSSQWMRDFQMKIQNLLN 177 (307)
T ss_pred cCHHHHHHHHHHhhccccccHHHHHHHHHHHHHhh-----cCcc-cccCHHHHHHHHHHHHHHHH
Confidence 334443444556665444 666665433 3222 23444455666665555554
No 413
>PRK14157 heat shock protein GrpE; Provisional
Probab=33.78 E-value=1.1e+02 Score=26.75 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
+..++++++.++++.++.+.+...|.+..||.++.=
T Consensus 82 ~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE 117 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKE 117 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888777777777888888888765543
No 414
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=33.63 E-value=2.4e+02 Score=27.85 Aligned_cols=28 Identities=4% Similarity=-0.041 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 180 TADAHVIALQKQSADLLLEYDRLLEDNQ 207 (218)
Q Consensus 180 ~~~~d~~aLKKQae~l~~EYdrL~~e~~ 207 (218)
....+.++++++.+.+..++..|.++.+
T Consensus 602 ~~~~~~~~~~~~l~~~~~~w~~l~~~~~ 629 (638)
T PRK10636 602 ACLQQQASAKSGLEECEMAWLEAQEQLE 629 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333
No 415
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=33.61 E-value=3.6e+02 Score=24.27 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 172 EQKDKQLETADAHVIALQKQSADLLLEYDRLLED 205 (218)
Q Consensus 172 ~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e 205 (218)
++++++++..+..+-.|+.+.+...+|..||...
T Consensus 267 ~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~ 300 (330)
T KOG2991|consen 267 EELDEDVEGMQSTILILQQKLKETRKEIQRLKKG 300 (330)
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444333
No 416
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.61 E-value=2.9e+02 Score=26.35 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQ 207 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~ 207 (218)
++..++++.+++..+.+.+.++.+
T Consensus 76 e~~~l~~~l~~~e~~~~~~~~~l~ 99 (429)
T COG0172 76 EVKELKEKLKELEAALDELEAELD 99 (429)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Confidence 334444444444444444444433
No 417
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=33.47 E-value=3.3e+02 Score=24.70 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027820 184 HVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL 202 (218)
.-+.||-|+..+.+|-++|
T Consensus 263 rN~~LK~qa~~lerEI~yl 281 (294)
T KOG4571|consen 263 RNEELKDQASELEREIRYL 281 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445556666666665554
No 418
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=33.34 E-value=77 Score=26.98 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 181 ADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 181 ~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.+.|-+.||.|.+++..+-++|..+..+++..+.
T Consensus 110 lE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~ 143 (198)
T KOG0483|consen 110 LEKDYESLKRQLESLRSENDRLQSEVQELVAELS 143 (198)
T ss_pred hhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 4668889999999999999999999998887665
No 419
>PLN02320 seryl-tRNA synthetase
Probab=33.27 E-value=2.8e+02 Score=26.95 Aligned_cols=14 Identities=7% Similarity=0.313 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 027820 105 IDRMHHYLTKLIRL 118 (218)
Q Consensus 105 I~R~~~li~~l~~l 118 (218)
+.++..+=.+...+
T Consensus 92 vd~l~~ld~~~r~~ 105 (502)
T PLN02320 92 LELVLELYENMLAL 105 (502)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444333333
No 420
>PRK14156 heat shock protein GrpE; Provisional
Probab=33.18 E-value=94 Score=25.93 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.+++.+++|.+.+...|-|+..|.++.+...+
T Consensus 34 ~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 65 (177)
T PRK14156 34 SELELANERADEFENKYLRAHAEMQNIQRRAN 65 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777665543
No 421
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=32.93 E-value=1.2e+02 Score=26.85 Aligned_cols=14 Identities=29% Similarity=0.235 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQ 173 (218)
Q Consensus 160 l~~e~~kLk~el~~ 173 (218)
+.+|+++|+.|+.+
T Consensus 71 l~~EN~~Lr~e~~~ 84 (283)
T TIGR00219 71 LEYENYKLRQELLK 84 (283)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666666543
No 422
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=32.91 E-value=2e+02 Score=22.80 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQN 208 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~ 208 (218)
.++.+++..++..+..+++.+.++.+=-.++.+|..+.+.+...+.+
T Consensus 80 a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~ 126 (131)
T PF04859_consen 80 AEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKS 126 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444334444444433333344444444443333333
No 423
>PRK14144 heat shock protein GrpE; Provisional
Probab=32.91 E-value=1.1e+02 Score=25.95 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
..++.++++.+.+...|-|+..|.++.+...
T Consensus 52 ~~i~~le~e~~elkdk~lR~~AefeN~RKR~ 82 (199)
T PRK14144 52 EQLTLAEQKAHENWEKSVRALAELENVRRRM 82 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666655443
No 424
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=32.85 E-value=71 Score=18.80 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027820 93 SLIGFTLFLGFIIDRMHHYLT 113 (218)
Q Consensus 93 YLtGF~LFL~lvI~R~~~li~ 113 (218)
-|+|..|.+.+...-+++++.
T Consensus 5 vi~g~llv~lLl~YLvYAL~n 25 (29)
T PRK14750 5 IVCGALLVLLLLGYLVYALFN 25 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 589999999999998888764
No 425
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.82 E-value=5e+02 Score=25.70 Aligned_cols=47 Identities=30% Similarity=0.350 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
-.++++.|+. .+...+.+.+.|++|.+.+..+|+....+.+..|.+.
T Consensus 326 ~~~~~~~el~----~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~ 372 (557)
T COG0497 326 YLDKIKEELA----QLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKA 372 (557)
T ss_pred HHHHHHHHHH----HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554 3445677889999999999999999999888776553
No 426
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=32.63 E-value=1e+02 Score=21.14 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIA 187 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~a 187 (218)
..+.++.|+++|.+.+.++...+..+..
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777766666666665543
No 427
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=32.58 E-value=1.7e+02 Score=23.42 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=11.8
Q ss_pred CCCChHHHHHHHH--HHHHHHHHHH
Q 027820 75 GTMSPMDQVLWRT--HLLEASLIGF 97 (218)
Q Consensus 75 ~~~~~~~~~~~~~--rrfn~YLtGF 97 (218)
|..+..|..++++ |-+|-.|-|+
T Consensus 20 ~~d~lsDd~LvsmSVReLNr~LrG~ 44 (135)
T KOG4196|consen 20 GGDRLSDDELVSMSVRELNRHLRGL 44 (135)
T ss_pred CCCCcCHHHHHHhhHHHHHHHhcCC
Confidence 3444455555554 4445555554
No 428
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=32.42 E-value=3.1e+02 Score=23.27 Aligned_cols=9 Identities=33% Similarity=0.383 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 027820 187 ALQKQSADL 195 (218)
Q Consensus 187 aLKKQae~l 195 (218)
+++|+.+++
T Consensus 127 slkk~~e~l 135 (203)
T KOG3433|consen 127 SLKKILESL 135 (203)
T ss_pred HHHHHHHHH
Confidence 333333333
No 429
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=32.41 E-value=3.1e+02 Score=24.35 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 166 KLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 166 kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL 202 (218)
+++.+++.+.++=++...+-+-|+.|-+||-.+-..|
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el 130 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHEL 130 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3333333333333333444445555556554444333
No 430
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=32.26 E-value=2.1e+02 Score=21.14 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027820 182 DAHVIALQKQSADLLLEYDR 201 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdr 201 (218)
..|+.+++.+++.-..|=+|
T Consensus 44 ~~dv~~a~aaa~aAk~EA~R 63 (85)
T PRK09973 44 EQDMKALRPQIYAAKSEANR 63 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455444444333333
No 431
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=32.24 E-value=1.2e+02 Score=30.30 Aligned_cols=56 Identities=21% Similarity=0.247 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 158 STLSVNLKKLKSECEQKDKQLETADAHVIA-----LQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 158 ~~l~~e~~kLk~el~~~~kel~~~~~d~~a-----LKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
+.+...++.++.+|.+.+.++.++..+... =+|-.|...+-++||.+..+++.-|.
T Consensus 639 ekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~q~ 699 (759)
T KOG0981|consen 639 EKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEIQM 699 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhhhc
Confidence 355666777777777766666666444211 12345566666667766666665443
No 432
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=31.75 E-value=4.4e+02 Score=26.48 Aligned_cols=42 Identities=19% Similarity=0.425 Sum_probs=28.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 153 LQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSAD 194 (218)
Q Consensus 153 ~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~ 194 (218)
...+++.++.++..++++|+..+.++...+..++-+..+..+
T Consensus 84 L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~ 125 (632)
T PF14817_consen 84 LEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISD 125 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777777777777777777777777776655554444
No 433
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=31.53 E-value=2.7e+02 Score=28.46 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
++.|...|.+.+++-.......+.+..+.+..++++..+|.+|..+..+++..
T Consensus 709 lraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~ 761 (961)
T KOG4673|consen 709 LRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRK 761 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777765555555566777788888888888888888777666543
No 434
>COG5283 Phage-related tail protein [Function unknown]
Probab=31.48 E-value=7.1e+02 Score=27.05 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLED 205 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e 205 (218)
.+.+.+++.++-.+..+.+.+.......+.+|+..-+.+.|-+.-..
T Consensus 61 ~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~~ 107 (1213)
T COG5283 61 GLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENK 107 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777776677767777777777777777777665333
No 435
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=31.44 E-value=46 Score=30.53 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
.++..++..+......+.....++.+...+..+++..|+.+..+..+++..
T Consensus 84 stV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksd 134 (326)
T PF04582_consen 84 STVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSD 134 (326)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhh
Confidence 333344444433333333344444445555555555555555555555443
No 436
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=31.16 E-value=1.5e+02 Score=26.39 Aligned_cols=10 Identities=10% Similarity=0.315 Sum_probs=5.8
Q ss_pred HHHHHHHhhH
Q 027820 52 TMFVILLSSL 61 (218)
Q Consensus 52 ~l~llF~Dsv 61 (218)
.+.++|+|+-
T Consensus 20 ~~~~~~~~~~ 29 (284)
T COG1792 20 LLLLLFADSR 29 (284)
T ss_pred HHHHhheecc
Confidence 4456667764
No 437
>PF10625 UspB: Universal stress protein B (UspB); InterPro: IPR019598 Universal stress protein B (UspB) in Escherichia coli is a 14kDa protein which is predicted to be an integral membrane protein. Over expression of UspB results in cell death in stationary phase, and mutants of UspB are sensitive to ethanol exposure during stationary phase [].
Probab=31.10 E-value=83 Score=24.08 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 94 LIGFTLFLGFIIDRMHHYLTKLIRLRS 120 (218)
Q Consensus 94 LtGF~LFL~lvI~R~~~li~~l~~l~~ 120 (218)
|||-++|+++++-.++++++-...++.
T Consensus 2 is~d~i~~Al~~v~~vNm~RY~SsLR~ 28 (107)
T PF10625_consen 2 ISGDAIFWALCIVCIVNMARYFSSLRA 28 (107)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999998888876665544
No 438
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=31.09 E-value=2.4e+02 Score=25.91 Aligned_cols=38 Identities=26% Similarity=0.279 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEY 199 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EY 199 (218)
++.++|..+++.+++.|......++++++-++-++..+
T Consensus 115 ~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 115 QRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555555555555555554
No 439
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.91 E-value=1.4e+02 Score=26.71 Aligned_cols=44 Identities=32% Similarity=0.457 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSADLLL--EYDRLLEDN 206 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~--EYdrL~~e~ 206 (218)
.+.+||.||..+++-|..++..+-.=-||+-+|.. ||+...+..
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e~~~~~ek~ 271 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKADKEYQKELEKK 271 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchhHHHHHHHH
Confidence 46778888888877777777766666788888864 777555543
No 440
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=30.77 E-value=3.7e+02 Score=24.44 Aligned_cols=7 Identities=43% Similarity=0.743 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 027820 162 VNLKKLK 168 (218)
Q Consensus 162 ~e~~kLk 168 (218)
.+.++++
T Consensus 41 ~~~~~~~ 47 (378)
T TIGR01554 41 TDVEKLK 47 (378)
T ss_pred HHHHHHH
Confidence 3333333
No 441
>PRK14149 heat shock protein GrpE; Provisional
Probab=30.74 E-value=1.2e+02 Score=25.56 Aligned_cols=35 Identities=6% Similarity=0.021 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSAD 194 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~ 194 (218)
..+.+++|+.++++.+..+.++.+|.+..||.++.
T Consensus 41 ~~~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~k 75 (191)
T PRK14149 41 EGEIKEDFELKYKEMHEKYLRVHADFENVKKRLER 75 (191)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777777777778888888775543
No 442
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=30.60 E-value=2.5e+02 Score=22.29 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQL 178 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel 178 (218)
.+..++..|+.++.+.+++.
T Consensus 64 ~l~~~l~~l~~eL~~Lr~~~ 83 (126)
T PF07028_consen 64 ELKQELDVLSKELQALRKEY 83 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444433
No 443
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=30.48 E-value=3e+02 Score=26.19 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=9.2
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 027820 158 STLSVNLKKLKSECEQKDK 176 (218)
Q Consensus 158 ~~l~~e~~kLk~el~~~~k 176 (218)
..+..++++|+.-++.+.+
T Consensus 216 d~Ll~kVdDLQD~VE~LRk 234 (424)
T PF03915_consen 216 DRLLTKVDDLQDLVEDLRK 234 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554443
No 444
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=30.42 E-value=5.4e+02 Score=25.36 Aligned_cols=102 Identities=14% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHhHhhhHhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 108 MHHYLTKLIRLRSNAGSSKEEVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSECEQKDKQLETADAHVIA 187 (218)
Q Consensus 108 ~~~li~~l~~l~~~~~a~~~~~kq~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~a 187 (218)
...+-.+-+...++.... +....++.+-.-......+++.....+++....+++.+|..+|-.++++++-..-+.+-
T Consensus 182 ~~llk~Et~~~~~keq~~---y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekee 258 (596)
T KOG4360|consen 182 AMLLKTETLTYEEKEQQL---YGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEE 258 (596)
T ss_pred HHHHHhhhcchhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 188 LQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 188 LKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
|..=..--...=+.+.+|+.+++++
T Consensus 259 l~~~Lq~~~da~~ql~aE~~EleDk 283 (596)
T KOG4360|consen 259 LDEHLQAYKDAQRQLTAELEELEDK 283 (596)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
No 445
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=30.36 E-value=30 Score=26.22 Aligned_cols=8 Identities=25% Similarity=0.530 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 027820 163 NLKKLKSE 170 (218)
Q Consensus 163 e~~kLk~e 170 (218)
|+++|-..
T Consensus 23 ElEeLTas 30 (100)
T PF06428_consen 23 ELEELTAS 30 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 446
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=29.91 E-value=6.2e+02 Score=25.87 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 176 KQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 176 kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
+++..+..+.+.|++|......+.+....-.+.++
T Consensus 190 ~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR 224 (739)
T PF07111_consen 190 KELAEAQREADLLREQLSKTQEELEAQVTLVEQLR 224 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44555555666666665555555554433333333
No 447
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=29.90 E-value=1.6e+02 Score=23.38 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
+.+.+|..|++..++++..+-++.+.+-++.+++
T Consensus 104 ~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 137 (144)
T PF11221_consen 104 KRIKELEEENEEAEEELQEAVKEAEELLKQVQEL 137 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666655
No 448
>PRK14145 heat shock protein GrpE; Provisional
Probab=29.71 E-value=1.5e+02 Score=25.23 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 186 IALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 186 ~aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
+.++++.+.+..-|-|+..|.++.+..
T Consensus 55 ~~le~e~~el~d~~lR~~AEfeN~rkR 81 (196)
T PRK14145 55 QQKEVEAQEYLDIAQRLKAEFENYRKR 81 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555544433
No 449
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=29.69 E-value=4.6e+02 Score=24.29 Aligned_cols=38 Identities=5% Similarity=0.085 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 177 QLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 177 el~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
+.+.+...+..++.+.+..+.--..+..+++++.++|+
T Consensus 274 eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe 311 (359)
T PF10498_consen 274 EYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELE 311 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444
No 450
>PRK14159 heat shock protein GrpE; Provisional
Probab=29.63 E-value=1.9e+02 Score=24.01 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 161 SVNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
+.++++++.++++.+..+.+..+|.+..||.++.-
T Consensus 29 ~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE 63 (176)
T PRK14159 29 DVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKE 63 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777788888887766544
No 451
>PRK14163 heat shock protein GrpE; Provisional
Probab=29.60 E-value=1.4e+02 Score=25.79 Aligned_cols=9 Identities=11% Similarity=0.198 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 027820 164 LKKLKSECE 172 (218)
Q Consensus 164 ~~kLk~el~ 172 (218)
.+.++.++.
T Consensus 42 ~~~l~~~l~ 50 (214)
T PRK14163 42 TAGLTAQLD 50 (214)
T ss_pred hHHHHHHHH
Confidence 444444443
No 452
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=29.42 E-value=1.2e+02 Score=25.85 Aligned_cols=10 Identities=30% Similarity=0.159 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 027820 194 DLLLEYDRLL 203 (218)
Q Consensus 194 ~l~~EYdrL~ 203 (218)
-+..-.+||+
T Consensus 160 ~la~~ie~l~ 169 (200)
T PF07412_consen 160 YLAEVIERLT 169 (200)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 3333344443
No 453
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=29.40 E-value=3.1e+02 Score=27.52 Aligned_cols=30 Identities=7% Similarity=0.148 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 180 TADAHVIALQKQSADLLLEYDRLLEDNQNL 209 (218)
Q Consensus 180 ~~~~d~~aLKKQae~l~~EYdrL~~e~~~l 209 (218)
..+.+++.+..|......++++-.++-.+.
T Consensus 97 ~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~ 126 (632)
T PF14817_consen 97 ELDKEIESREREVSRQEASREQMLDKISDS 126 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555554444443
No 454
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=29.30 E-value=6.3e+02 Score=25.76 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
+.++..+.++............++.++.+...++.|-.+|..+....+
T Consensus 574 ~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 574 ELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444444555666666666666666666666655443
No 455
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=29.05 E-value=1.7e+02 Score=21.70 Aligned_cols=7 Identities=29% Similarity=0.454 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 027820 167 LKSECEQ 173 (218)
Q Consensus 167 Lk~el~~ 173 (218)
++..++.
T Consensus 82 l~~r~~~ 88 (120)
T PF02996_consen 82 LKKRIKE 88 (120)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 456
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=28.67 E-value=1.9e+02 Score=19.64 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 164 LKKLKSECEQKDKQLETADAHVIALQ 189 (218)
Q Consensus 164 ~~kLk~el~~~~kel~~~~~d~~aLK 189 (218)
+++|..++..+...+.....|+.+++
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 457
>PRK14140 heat shock protein GrpE; Provisional
Probab=28.67 E-value=1.7e+02 Score=24.76 Aligned_cols=16 Identities=38% Similarity=0.407 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 027820 194 DLLLEYDRLLEDNQNL 209 (218)
Q Consensus 194 ~l~~EYdrL~~e~~~l 209 (218)
.+...|-|+..|.++.
T Consensus 55 elkd~~lR~~Ae~eN~ 70 (191)
T PRK14140 55 ELEERYLRLQADFENY 70 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444433
No 458
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=28.65 E-value=2.5e+02 Score=21.00 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 154 QEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 154 ~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
.+..+.+.+.++.++..++..++.....+..+..++++...+
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 459
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=28.45 E-value=84 Score=22.55 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhHHHHHHhhhc
Q 027820 49 IAGTMFVILLSSLMSIVKIQNK 70 (218)
Q Consensus 49 ~~~~l~llF~Dsv~~~~k~~~~ 70 (218)
+-.+++++|+-.+.-+..|.+.
T Consensus 8 ~Pliif~ifVap~wl~lHY~~k 29 (75)
T TIGR02976 8 IPLIIFVIFVAPLWLILHYRSK 29 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3345557778888888888654
No 460
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=28.34 E-value=3.4e+02 Score=22.31 Aligned_cols=61 Identities=10% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 027820 154 QEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLE-YDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 154 ~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~E-YdrL~~e~~~l~~~l~ 214 (218)
.+..+.-+.+++.|++.++......+-.-+|+-.++.|..+-+.- -+.|.++..+++.-++
T Consensus 71 kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~e 132 (157)
T COG3352 71 KKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVE 132 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
No 461
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.31 E-value=6.6e+02 Score=25.70 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 027820 187 ALQKQSADLLLEY 199 (218)
Q Consensus 187 aLKKQae~l~~EY 199 (218)
..++|++++.++.
T Consensus 576 ~a~~~~~~~i~~l 588 (771)
T TIGR01069 576 ALKKEVESIIREL 588 (771)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 462
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=28.27 E-value=2.4e+02 Score=20.53 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
+.+...+.-=.+..+|+.+.|=-+.+-+.+.
T Consensus 33 ~~~~~v~~hI~lLheYNeiKD~gQ~Lig~iA 63 (83)
T PF07061_consen 33 DPEKIVKRHIKLLHEYNEIKDIGQGLIGLIA 63 (83)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3443444444566889999887776655543
No 463
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=28.12 E-value=1.7e+02 Score=18.97 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027820 187 ALQKQSADLLLEYDRLLEDNQNL 209 (218)
Q Consensus 187 aLKKQae~l~~EYdrL~~e~~~l 209 (218)
.|..+...|..+.+.|..+...|
T Consensus 29 ~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333
No 464
>PRK14159 heat shock protein GrpE; Provisional
Probab=28.01 E-value=1.2e+02 Score=25.19 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 181 ADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 181 ~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
.+.+++.++++.+.+...|-|+..|.++.+...+.
T Consensus 28 ~~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~r 62 (176)
T PRK14159 28 EDVEQNKLQKDYDELKDKYMRANAEFENIKKRMEK 62 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 465
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=27.96 E-value=74 Score=24.67 Aligned_cols=26 Identities=8% Similarity=0.006 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHHHHHhhHHHHHH
Q 027820 41 KGPATVKTIAGTMFVILLSSLMSIVK 66 (218)
Q Consensus 41 ~~~~~~~~~~~~l~llF~Dsv~~~~k 66 (218)
||-+++.+|++|++++|+=++++-++
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~rRR 26 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNRRR 26 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHH
No 466
>PRK04960 universal stress protein UspB; Provisional
Probab=27.79 E-value=1e+02 Score=23.74 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 94 LIGFTLFLGFIIDRMHHYLTKLIRLRS 120 (218)
Q Consensus 94 LtGF~LFL~lvI~R~~~li~~l~~l~~ 120 (218)
|||.++|+++++-.++++++=...++.
T Consensus 2 is~d~i~~Al~~v~~vNm~RY~SsLR~ 28 (111)
T PRK04960 2 ISTVALFWALCVVCIVNMARYFSSLRA 28 (111)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>PRK15396 murein lipoprotein; Provisional
Probab=27.74 E-value=2.4e+02 Score=20.40 Aligned_cols=53 Identities=17% Similarity=0.252 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 156 EISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQN 208 (218)
Q Consensus 156 e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~ 208 (218)
+.+.+..+++.|+.+......+......++++-|..++.-+.--|....-|.+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~sy~k 78 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQATKYRK 78 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 468
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=27.58 E-value=3.4e+02 Score=22.07 Aligned_cols=108 Identities=15% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcccccHH-HHHHHHHHHhHhhhHhhhhhHHHHHHHHHhhhhHHHHH
Q 027820 90 LEASLIGFTLFLGFIIDRMHHYLT---KLIRLRSNAGSSKE-EVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLK 165 (218)
Q Consensus 90 fn~YLtGF~LFL~lvI~R~~~li~---~l~~l~~~~~a~~~-~~kq~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~ 165 (218)
||-|++-++-.|..+.. +.++.. .-...-.+.++++. .+=|+++-...+-+....-....... -+...++++
T Consensus 1 ~~~~vAl~taIlAv~~A-i~~~~g~~~~nea~~~q~~AsdqWa~YQAKsiK~~l~e~~~~~l~~~~~~---~~~~~~~i~ 76 (157)
T PF14235_consen 1 WNNRVALTTAILAVLGA-ISSYKGGNYKNEAVIAQAEASDQWAYYQAKSIKQHLAELAADLLELELAA---RAAYQKKIA 76 (157)
T ss_pred ChhHHHHHHHHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---hhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 166 KLKSECEQKDKQLETADAHVIALQKQSADLLLEYDR 201 (218)
Q Consensus 166 kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdr 201 (218)
+.+++.++-+++.+..+...+...++++.....+++
T Consensus 77 ~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~ 112 (157)
T PF14235_consen 77 RYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHR 112 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccch
No 469
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=27.52 E-value=1.9e+02 Score=29.75 Aligned_cols=58 Identities=24% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 154 QEEISTLSVNLKKLKSECEQKDKQLETAD-------AHVIALQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 154 ~~e~~~l~~e~~kLk~el~~~~kel~~~~-------~d~~aLKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
..|.+++.+++++++++++..++.+.... .-++.=++..++++.+...+.+....+++
T Consensus 810 ~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l~~ 874 (874)
T PRK05729 810 EAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARLKA 874 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 470
>PRK14127 cell division protein GpsB; Provisional
Probab=27.49 E-value=89 Score=24.06 Aligned_cols=66 Identities=24% Similarity=0.334 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 147 SKELKRLQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 147 ~~~~~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
.++-.....++..+..++..|+.++.+.+..+...+..-...+.+..+-..-||=| ...++|.+.+
T Consensus 36 ~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiL-KRls~LEk~V 101 (109)
T PRK14127 36 IKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDIL-KRLSNLEKHV 101 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHH-HHHHHHHHHH
No 471
>PF07254 DUF1434: Protein of unknown function (DUF1434); InterPro: IPR009883 This family consists of several hypothetical bacterial proteins of around 135 residues in length. Members of this family all appear to be Enterobacterial proteins. The function of this family is unknown.
Probab=27.47 E-value=2.1e+02 Score=22.75 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHHHhhHHHHHHhhhc
Q 027820 5 LFLVLFAEGALAFLLLVKIGPLRELVIKSLDQLKMGKGPATVKTIAGTMFVILLSSLMSIVKIQNK 70 (218)
Q Consensus 5 vf~~L~~Em~~~~lL~lP~~P~rk~~~~~~~~~~~~~~~~~~~~~~~~l~llF~Dsv~~~~k~~~~ 70 (218)
.|.+++.=.++.++|+.|. |. -...+-.+++.+|+.-|+=|-+++.+.+.+
T Consensus 16 ~~Sl~~~g~v~~~~Ll~PW-P~--------------~~~~~wl~Ll~lvvfe~irsqrri~~~~G~ 66 (132)
T PF07254_consen 16 LLSLLVHGAVVLLILLAPW-PE--------------SYTPLWLLLLSLVVFECIRSQRRIRSRQGE 66 (132)
T ss_pred HHHHHHHHHHHHHHHHhcc-Cc--------------chHHHHHHHHHHHHHHHHHHHHhHHhCCeE
No 472
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=27.46 E-value=1.9e+02 Score=26.15 Aligned_cols=40 Identities=25% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 165 KKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLE 204 (218)
Q Consensus 165 ~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~ 204 (218)
+|-+.|=+++..+++..++.-+.||-|+..+.+|-++|.+
T Consensus 244 qKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 244 QKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=27.22 E-value=3e+02 Score=23.80 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccCC
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLL-EYDRLLEDNQNLQKQAQGYKS 218 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~-EYdrL~~e~~~l~~~l~~~~~ 218 (218)
..+.+.-.-=++.++-.=..+.|+..+|++.....+ |++-|-.|++++++++++.++
T Consensus 80 ~~vsk~~vtkaqq~~v~~QQ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks 137 (220)
T KOG3156|consen 80 ETVSKELVTKAQQEKVSYQQKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKS 137 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=27.21 E-value=1.5e+02 Score=26.80 Aligned_cols=40 Identities=25% Similarity=0.313 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 157 ISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLL 196 (218)
Q Consensus 157 ~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~ 196 (218)
+..+..++++|+.++++..++....+.+++-++++.+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 1 ISELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 475
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=27.19 E-value=2.8e+02 Score=20.94 Aligned_cols=82 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccccHHHHHHHHHHHhHhhhHhhhhhHHHHHHHHHhhhhHHHHHHHHHHH
Q 027820 93 SLIGFTLFLGFIIDRMHHYLT-KLIRLRSNAGSSKEEVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSEC 171 (218)
Q Consensus 93 YLtGF~LFL~lvI~R~~~li~-~l~~l~~~~~a~~~~~kq~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~kLk~el 171 (218)
|+.|...++.+++.-...+-+ .+..++++.++..+.+++....++.+.. ...++.....+..+-+.++
T Consensus 4 ~~~~~l~~lvl~L~~~l~~qs~~i~~L~a~n~~q~~tI~qq~~~~~~L~~-----------~~~~~r~~~~~~~~~~qq~ 72 (110)
T PF10828_consen 4 YIYIALAVLVLGLGGWLWYQSQRIDRLRAENKAQAQTIQQQEDANQELKA-----------QLQQNRQAVEEQQKREQQL 72 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 027820 172 EQKDKQLETADAHV 185 (218)
Q Consensus 172 ~~~~kel~~~~~d~ 185 (218)
+....+..+.=+++
T Consensus 73 r~~~e~~~e~ik~~ 86 (110)
T PF10828_consen 73 RQQSEERRESIKTA 86 (110)
T ss_pred HHHHHHHHHHHHHH
No 476
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=27.15 E-value=3.6e+02 Score=22.24 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKDKQLET-ADAHVIALQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~-~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
++-+|-.++++.+..++. +...+.-+.+|.+-|+..|..++++.+..+.
T Consensus 31 dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~~~~~~~ 80 (159)
T PF10504_consen 31 DLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILEEAERNEE 80 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
No 477
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=26.79 E-value=2.7e+02 Score=22.48 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 150 LKRLQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLE 198 (218)
Q Consensus 150 ~~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~E 198 (218)
+.+..+-++.+++++++|++.+++...++.+....+..+..++..++.+
T Consensus 89 e~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 89 EKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 478
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=26.65 E-value=3e+02 Score=21.18 Aligned_cols=102 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhHhhhHhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 104 IIDRMHHYLTKLIRLRSNAGSSKEEVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSECEQKDKQLETADA 183 (218)
Q Consensus 104 vI~R~~~li~~l~~l~~~~~a~~~~~kq~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~ 183 (218)
....+-.+=..+..+..+ +..+.+....+.........-.....+..+.-..-..+++..|+..++.-.....
T Consensus 4 F~~~v~~I~~~i~~i~~~-------v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~ 76 (151)
T cd00179 4 FFEEVEEIRGNIDKISED-------VEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEA 76 (151)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 184 -----HVIALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 184 -----d~~aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
+.-+-+-|.+.+.+.|-..+.+|+..|..
T Consensus 77 ~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~ 110 (151)
T cd00179 77 LNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRK 110 (151)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>PF06631 DUF1154: Protein of unknown function (DUF1154); InterPro: IPR009535 This entry represents group a 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta conserved site.; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0006629 lipid metabolic process
Probab=26.61 E-value=1.9e+02 Score=18.94 Aligned_cols=35 Identities=29% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 176 KQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 176 kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
++|+...+=+..+||| ++|++.|...|.+-+..++
T Consensus 12 e~Lk~~K~y~Kl~KKq----~KEl~~lkKKh~Ke~~~mQ 46 (47)
T PF06631_consen 12 EELKQHKAYVKLLKKQ----QKELEELKKKHQKERSSMQ 46 (47)
T ss_pred HHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHhhc
No 480
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=26.32 E-value=5.5e+02 Score=24.17 Aligned_cols=109 Identities=21% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhHhhhHhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 027820 98 TLFLGFIIDRMHHYLTKLIRLRSNAGSSKEEVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSECEQKDKQ 177 (218)
Q Consensus 98 ~LFL~lvI~R~~~li~~l~~l~~~~~a~~~~~kq~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~kLk~el~~~~ke 177 (218)
.+-++||+-+--.+......-.+. ..-+=+++++....+........+.+..-..-+...+.+++++.|.+-+..+
T Consensus 185 qis~mLilEcKka~~KaaEegqKA----~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAe 260 (561)
T KOG1103|consen 185 QISLMLILECKKALLKAAEEGQKA----EEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAE 260 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhH----HHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 178 LETADAHVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 178 l~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
+.+.++.-..+|...+.|.+-...|-.+|+.++
T Consensus 261 l~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~ 293 (561)
T KOG1103|consen 261 LEREEKRQKMLKEEMESLKEIVKDLEADHQHLR 293 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
No 481
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=26.22 E-value=8e+02 Score=25.96 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhH-hhhHhhhhhH
Q 027820 80 MDQVLWRTHLLEA----------SLIGFTLFLGFIIDRMHHYLTKLIRLRSNAGSSKEEVEQLQKEKMQ-LKDKEEKASK 148 (218)
Q Consensus 80 ~~~~~~~~rrfn~----------YLtGF~LFL~lvI~R~~~li~~l~~l~~~~~a~~~~~kq~~~~~~~-~~~~~~~~~~ 148 (218)
.++..+-.||.+. .+-||..-+. .|++++.+|+.=..-.+. .+.+++.-.. -.+....-.-
T Consensus 367 ~~r~~~~~rr~~~~l~k~~~r~~i~eGl~~a~~-~id~vi~~ir~s~~~~~a-------~~~l~~~f~~s~~qa~aIl~m 438 (957)
T PRK13979 367 EHQKEVVTRRTKKELEIAEKRFHIVEGFIKAIG-IMDEIIKTIRSSKSKKDA-------SENLIEKFGFTDEQAEAILEL 438 (957)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHcCCCHHHH-------HHHHHHHhCCCHHHHHHHHhC
Q ss_pred H-HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 149 E-LKRLQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEY 199 (218)
Q Consensus 149 ~-~~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EY 199 (218)
. ..-..-|...+.+|.++|.++++..+.=|...+.-...++++...+.+.|
T Consensus 439 rL~~Lt~le~~kl~~E~~eL~~~I~~l~~iL~~~~~l~~vi~~EL~eik~ky 490 (957)
T PRK13979 439 MLYRLTGLEIVAFEKEYKELEKLIKKLTKILSSEKELLKVIKKELKEVKEKY 490 (957)
T ss_pred cHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
No 482
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=26.18 E-value=3.2e+02 Score=26.89 Aligned_cols=59 Identities=25% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 151 KRLQEEISTLSVNLKKLKSECEQKDKQLETADA------HVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 151 ~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~------d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
+.... ++.+.+++++|+.++++.+.++...+. .+..+-++.+.+..+.+++.++-+++.
T Consensus 565 ~~~~~-~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 629 (635)
T PRK11147 565 KLQRE-LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELE 629 (635)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=26.16 E-value=1.4e+02 Score=22.22 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 185 VIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 185 ~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
....+++.+.|...|+.+..++..+.++++
T Consensus 75 ~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~ 104 (109)
T PF03980_consen 75 APYKKKEREQLNARLQELEEENEALAEEIQ 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=26.06 E-value=4.2e+02 Score=23.01 Aligned_cols=55 Identities=22% Similarity=0.181 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
...++++|+.+++...+.......-+.-++.+...+..+.-.|..+.++....+.
T Consensus 66 ~e~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~ 120 (256)
T PF14932_consen 66 EEEDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLK 120 (256)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
No 485
>PLN02943 aminoacyl-tRNA ligase
Probab=25.99 E-value=1.6e+02 Score=30.91 Aligned_cols=65 Identities=17% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 027820 154 QEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGYKS 218 (218)
Q Consensus 154 ~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~~~ 218 (218)
+.|.+++.+++++++++++..++.+....=.-.|=+.-.+.-..-...+.++.+.+++.++.+.+
T Consensus 888 ~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~ 952 (958)
T PLN02943 888 SAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKS 952 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 486
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=25.87 E-value=2.3e+02 Score=19.58 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 154 QEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLL 197 (218)
Q Consensus 154 ~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~ 197 (218)
.+-+..+...+.-.+.-++++++.+-..+.+++.|+.|...+..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PRK14141 heat shock protein GrpE; Provisional
Probab=25.86 E-value=1.5e+02 Score=25.42 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 180 TADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 180 ~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
..+..++.+++|.+.+...|-|+..|.++.+...+.
T Consensus 35 ~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~k 70 (209)
T PRK14141 35 PEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQR 70 (209)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=25.84 E-value=1.8e+02 Score=29.86 Aligned_cols=46 Identities=11% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 154 QEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEY 199 (218)
Q Consensus 154 ~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EY 199 (218)
..++..+.+|.++|+++++..+.=|...+.-.+-++++.+.+.+.|
T Consensus 426 ~~e~~kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~EL~eikkkf 471 (800)
T TIGR01063 426 GLEREKLQEEYKELLELIADLEDILASEERVLEIIREELEEIKEQF 471 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHh
No 489
>PRK11546 zraP zinc resistance protein; Provisional
Probab=25.72 E-value=3.6e+02 Score=21.78 Aligned_cols=67 Identities=10% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHhcccccHHHHHHHHHHHhHhhhHhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 114 KLIRLRSNAGSSKEEVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSECEQKDKQLETADAHVIA 187 (218)
Q Consensus 114 ~l~~l~~~~~a~~~~~kq~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~a 187 (218)
+...++.- .+.+..+...+.+....+..|-..+....+++.+.+.+|.+|+..+..++.......++
T Consensus 48 QQa~~q~I-------~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 48 QQAAWQKI-------HNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=25.65 E-value=2.4e+02 Score=26.35 Aligned_cols=49 Identities=12% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 027820 170 ECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGYKS 218 (218)
Q Consensus 170 el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~~~ 218 (218)
+.....+.++..+..++.++.|.+.+..+.+++..+..+++++++.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 16 TERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 491
>PF14282 FlxA: FlxA-like protein
Probab=25.60 E-value=2.9e+02 Score=20.73 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 161 SVNLKKLKSECEQKDKQLETADA----HVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~~~~----d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
...++.|+.+++.+.+++..... +.+.-++|.+-++..-.-|......++.+.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=25.52 E-value=2.6e+02 Score=23.84 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 027820 167 LKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGYKS 218 (218)
Q Consensus 167 Lk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~~~ 218 (218)
+.......+++++..+.+++.+.++.+.. ++++..++..+...+.++.+
T Consensus 191 i~~~~~~l~~~~~~~~~~i~~~~~rl~~~---~~~l~~qf~~me~~i~~lns 239 (239)
T PF07195_consen 191 ITSRIDSLNSQIKSLDKQIEDLEERLESK---EERLRKQFSAMESLISQLNS 239 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcC
No 493
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=25.50 E-value=4.7e+02 Score=23.31 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc
Q 027820 150 LKRLQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEY---DRLLEDNQNLQKQAQ 214 (218)
Q Consensus 150 ~~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EY---drL~~e~~~l~~~l~ 214 (218)
++....-..++++.++.+++.+++..+...+ +...|++|.+.+...- .+|..+-.+|.+-|.
T Consensus 1 ~~~l~~l~~pl~e~l~~~~~~l~~~~~~~~~---~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~ 65 (304)
T PF02646_consen 1 QEQLEQLLKPLKEQLEKFEKRLEESFEQRSE---EFGSLKEQLKQLSEANGEIQQLSQEASNLTSALK 65 (304)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
No 494
>PF10125 NADHdeh_related: NADH dehydrogenase I, subunit N related protein; InterPro: IPR017059 This group contains membrane proteins that are predicted to be transmembrane subunits (EhaH) of multisubunit membrane-bound [NiFe]-hydrogenase Eha complexes. The energy-converting hydrogenase A (eha) operon encodes a putative multisubunit membrane-bound [NiFe]-hydrogenase Eha in Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133). Sequence analysis of the eha operon indicates that it encodes at least 20 proteins, including the [NiFe]-hydrogenase large subunit (IPR014363 from INTERPRO), the [NiFe]-hydrogenase small subunit (PIRSF002913 from PIRSF), and two broadly conserved integral membrane proteins (this entry and PIRSF000215 from PIRSF). These four proteins show high sequence similarity to subunits of the Ech hydrogenase from Methanosarcina barkeri, Escherichia coli hydrogenases 3 and 4 (Hyc and Hyf), and CO-induced hydrogenase from Rhodospirillum rubrum (Coo), all of which form a distinct group of multisubunit membrane-bound [NiFe]-hydrogenases (together called hydrogenase-3-type hydrogenases). In addition to these four subunits, the eha operon encodes a 6[4Fe-4S] polyferredoxin, a 10[4Fe-4S] polyferredoxin, ten other predicted integral membrane proteins (PIRSF005019 from PIRSF, PIRSF019706 from PIRSF, PIRSF036534 from PIRSF, PIRSF006581 from PIRSF, PIRSF036535 from PIRSF, PIRSF019373 from PIRSF, PIRSF019136 from PIRSF, PIRSF036537 from PIRSF, PIRSF036538 from PIRSF, PIRSF004953 from PIRSF), and four hydrophilic subunits (PIRSF005292 from PIRSF, PIRSF019370 from PIRSF, PIRSF006414 from PIRSF, PIRSF000536 from PIRSF) (the latter two hydrophilic subunits are members of well-characterised enzyme families but lack the essential amino acids assumed to form the active site []). All of these proteins are expressed and therefore thought to be functional subunits of the Eha hydrogenase complex []. Note, however, that the ten additional predicted integral membrane proteins are absent from Ech, Coo, Hyc, and Hyf complexes (and therefore from corresponding organisms), indicating that those complexes have a simpler membrane component than Eha []. Members of this group are homologous to the N-terminal domain of PIRSF006542 from PIRSF members (e.g., EhbF, HyfF of E. coli hydrogenase 4, amongst others). Therefore, this type of membrane subunit of Eha complex is conserved across the various hydrogenase-3-type hydrogenases (that is, they are not limited to the Eha subgroup). A protein with sequence similarity to the C-terminal part of EhbF (PIRSF006542 from PIRSF) is not present in the Eha complex (not encoded by the eha operon). Based on sequence similarity and genome context analysis, other organisms such as Methanopyrus kandleri,Methanocaldococcus jannaschii, and M. thermoautotrophicum also encode Eha-like [NiFe]-hydrogenase-3-type complexes and have very similar eha operon structure.
Probab=25.39 E-value=1.6e+02 Score=25.26 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhc-----cccCCCCChHHHHHHHHHHHHHHHHH--------------HHHHHHHH
Q 027820 47 KTIAGTMFVILLSSLMSIVKIQNK-----GAKLGTMSPMDQVLWRTHLLEASLIG--------------FTLFLGFI 104 (218)
Q Consensus 47 ~~~~~~l~llF~Dsv~~~~k~~~~-----~~~~~~~~~~~~~~~~~rrfn~YLtG--------------F~LFL~lv 104 (218)
..++++++.++.-++--+-|-.++ +.........+-.+.+-|||-+-.|| |+||++++
T Consensus 25 ~~~~~F~~al~Ft~lv~lskpEkqve~~fg~~~~~~~~V~~~e~k~rRfmAI~CGlAtagam~TGDlFnftLF~ali 101 (219)
T PF10125_consen 25 FSLILFAVALIFTILVILSKPEKQVEAQFGRDGDKAKEVSPKELKIRRFMAIVCGLATAGAMLTGDLFNFTLFLALI 101 (219)
T ss_pred hHHHHHHHHHHHHHHheecCCcceeehhhccccceeeecCHHHHHHHHHHHHHHHHHhhccceecchHHHHHHHHHH
No 495
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=25.37 E-value=4.3e+02 Score=22.59 Aligned_cols=96 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHhcccccHHHHHHHHHHHhHhhhHhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 114 KLIRLRSNAGSSKEEVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSA 193 (218)
Q Consensus 114 ~l~~l~~~~~a~~~~~kq~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae 193 (218)
++..++.+ ++.++.+...-....-+-....+............+..|+..+..+.-+++.-+.++.-.+..++
T Consensus 11 EIsLLKqQ-------Lke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~ 83 (202)
T PF06818_consen 11 EISLLKQQ-------LKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAE 83 (202)
T ss_pred hHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 027820 194 DLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 194 ~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
.+..-...|-.|...+++.+...
T Consensus 84 lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 84 LLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HhhhhhhhhHHHHHHHHHHHHhh
No 496
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.22 E-value=4.8e+02 Score=27.94 Aligned_cols=83 Identities=18% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHhHhhhHhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 129 VEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQN 208 (218)
Q Consensus 129 ~kq~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~ 208 (218)
++.+++.-+..+....+....+.....+++.. ++.++ +. .....+.+.++.-.+++..++.++...|..+...
T Consensus 809 ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-k~-----k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~ 881 (1141)
T KOG0018|consen 809 VERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-KN-----KSKFEKKEDEINEVKKILRRLVKELTKLDKEITS 881 (1141)
T ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH-HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q ss_pred HHHHhcccCC
Q 027820 209 LQKQAQGYKS 218 (218)
Q Consensus 209 l~~~l~~~~~ 218 (218)
+..+++++++
T Consensus 882 ~es~ie~~~~ 891 (1141)
T KOG0018|consen 882 IESKIERKES 891 (1141)
T ss_pred hhhHHHHHHH
No 497
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=25.21 E-value=2.3e+02 Score=25.64 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 157 ISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDR 201 (218)
Q Consensus 157 ~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdr 201 (218)
.++....+.+++.++..++..+...+.++.+|++|..-.+++-|+
T Consensus 133 ~~~F~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~ 177 (308)
T PF06717_consen 133 DQDFNYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDR 177 (308)
T ss_pred chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
No 498
>PRK13553 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=25.19 E-value=4.9e+02 Score=23.13 Aligned_cols=93 Identities=16% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcccchh-HHHHHHHHHHhhhCCcchhH--HHHHHHHHHHHHhhHHHHHHhhhccccCCCCChH
Q 027820 4 LLFLVLFAEGALAFLLLVKIGPL-RELVIKSLDQLKMGKGPATV--KTIAGTMFVILLSSLMSIVKIQNKGAKLGTMSPM 80 (218)
Q Consensus 4 lvf~~L~~Em~~~~lL~lP~~P~-rk~~~~~~~~~~~~~~~~~~--~~~~~~l~llF~Dsv~~~~k~~~~~~~~~~~~~~ 80 (218)
++..||..=|.+....++-- .. .+....+=..+..+-+..++ .+++++.+++++-++.-++|... |..
T Consensus 34 iLglFl~~Hm~~~ssil~G~-~afn~va~f~E~~~~~~~g~p~~~sl~~~~I~l~~l~Ha~lalrk~P~--------n~~ 104 (258)
T PRK13553 34 FLGLFMWAHMFFVSTILISD-DAMYKVAKFFEGSFFFKAGEPALVSFVAAGVILIFVVHAFLAMRKFPI--------NYR 104 (258)
T ss_pred HHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHhhCccccCCcchhHHHHHHHHHHHHHHHHHHHHhhCCC--------CHH
Q ss_pred HHHHHHHH----------HHHH-HHHHHHHHHHHHH
Q 027820 81 DQVLWRTH----------LLEA-SLIGFTLFLGFII 105 (218)
Q Consensus 81 ~~~~~~~r----------rfn~-YLtGF~LFL~lvI 105 (218)
....++++ ++.. -+|||.+|+...+
T Consensus 105 q~~~~r~h~~~m~H~DT~lW~~Q~iTG~ilf~~~~~ 140 (258)
T PRK13553 105 QYQIFRTHKHLMKHGDTSLWFIQAFTGFAMFFLASV 140 (258)
T ss_pred HHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHH
No 499
>PRK11677 hypothetical protein; Provisional
Probab=25.10 E-value=3.5e+02 Score=21.50 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.+..+|+.+|++.+.+++.-+.++..==.++..| .+.|.+.|.++..-+.
T Consensus 29 ~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~L---l~~L~~~Y~~Ly~HlA 78 (134)
T PRK11677 29 RQQQALQYELEKNKAELEEYRQELVSHFARSAEL---LDTMAKDYRQLYQHMA 78 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
No 500
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=25.08 E-value=1.6e+02 Score=22.32 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 027820 158 STLSVNLKKLKSECEQ----KDKQLETADAHVI 186 (218)
Q Consensus 158 ~~l~~e~~kLk~el~~----~~kel~~~~~d~~ 186 (218)
+...+++++|+.++++ .+++++..+..++
T Consensus 68 ~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 68 KKEKEQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Done!