Query 027820
Match_columns 218
No_of_seqs 127 out of 322
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 03:00:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hnw_A Uncharacterized protein 95.3 0.21 7E-06 39.0 10.5 55 160-214 80-134 (138)
2 3vkg_A Dynein heavy chain, cyt 94.5 5.8 0.0002 44.8 22.9 56 159-214 2011-2066(3245)
3 3hnw_A Uncharacterized protein 94.5 0.27 9.1E-06 38.3 9.3 55 160-214 73-127 (138)
4 1ic2_A Tropomyosin alpha chain 94.2 0.59 2E-05 32.8 9.9 53 162-214 20-72 (81)
5 2yy0_A C-MYC-binding protein; 94.2 0.1 3.4E-06 34.2 5.3 34 183-216 19-52 (53)
6 3q8t_A Beclin-1; autophagy, AT 94.1 0.57 1.9E-05 34.2 9.9 44 162-205 25-68 (96)
7 3u59_A Tropomyosin beta chain; 93.4 0.9 3.1E-05 33.2 9.9 53 162-214 23-75 (101)
8 2dfs_A Myosin-5A; myosin-V, in 93.4 0.42 1.4E-05 48.6 10.6 44 170-213 978-1021(1080)
9 3a7p_A Autophagy protein 16; c 93.1 1.1 3.7E-05 35.4 10.5 61 153-213 73-133 (152)
10 3a7o_A Autophagy protein 16; c 92.2 1.7 5.8E-05 30.0 9.0 57 160-216 16-72 (75)
11 3u1c_A Tropomyosin alpha-1 cha 91.3 2.4 8.1E-05 31.0 9.9 52 163-214 24-75 (101)
12 3oja_B Anopheles plasmodium-re 90.9 4.1 0.00014 37.6 13.6 52 162-213 523-574 (597)
13 3oja_B Anopheles plasmodium-re 90.3 8.5 0.00029 35.4 15.1 57 158-214 526-582 (597)
14 2jee_A YIIU; FTSZ, septum, coi 90.1 3.7 0.00013 29.0 9.6 51 157-214 22-72 (81)
15 3qh9_A Liprin-beta-2; coiled-c 88.4 3 0.0001 29.5 7.9 52 155-206 26-77 (81)
16 3a7p_A Autophagy protein 16; c 88.4 4.6 0.00016 31.8 9.8 48 159-206 72-119 (152)
17 3na7_A HP0958; flagellar bioge 88.3 10 0.00035 31.7 13.2 45 163-207 98-142 (256)
18 2dfs_A Myosin-5A; myosin-V, in 87.8 3.3 0.00011 42.1 11.0 12 202-213 1028-1039(1080)
19 3na7_A HP0958; flagellar bioge 87.3 12 0.0004 31.3 15.0 29 172-200 121-149 (256)
20 4h22_A Leucine-rich repeat fli 87.2 7.3 0.00025 28.7 10.8 47 156-202 31-77 (103)
21 1c1g_A Tropomyosin; contractIl 86.2 11 0.00038 29.8 15.4 19 193-211 261-279 (284)
22 3nmd_A CGMP dependent protein 85.0 3.1 0.00011 28.8 6.4 32 164-195 21-52 (72)
23 3nmd_A CGMP dependent protein 84.6 4.5 0.00015 28.0 7.1 12 190-201 54-65 (72)
24 2v71_A Nuclear distribution pr 84.5 15 0.00051 29.9 14.0 21 192-212 90-110 (189)
25 3cl3_D NF-kappa-B essential mo 82.0 8.8 0.0003 29.3 8.4 50 160-209 53-102 (130)
26 4h22_A Leucine-rich repeat fli 82.0 9.2 0.00031 28.2 8.2 57 159-215 27-83 (103)
27 3q8t_A Beclin-1; autophagy, AT 81.9 12 0.00042 26.9 13.4 58 158-215 35-92 (96)
28 3ghg_A Fibrinogen alpha chain; 81.2 36 0.0012 31.9 14.5 58 160-217 115-189 (562)
29 2efr_A General control protein 80.0 20 0.00069 28.2 13.9 39 163-201 78-116 (155)
30 3viq_B Mating-type switching p 78.9 8.7 0.0003 27.3 7.0 19 193-211 37-55 (85)
31 1ic2_A Tropomyosin alpha chain 76.7 16 0.00054 25.2 8.6 23 167-189 39-61 (81)
32 4dzn_A Coiled-coil peptide CC- 74.3 8.1 0.00028 21.9 4.6 8 182-189 22-29 (33)
33 2jee_A YIIU; FTSZ, septum, coi 74.0 20 0.0007 25.2 10.5 17 157-173 29-45 (81)
34 3vkg_A Dynein heavy chain, cyt 73.8 1.1E+02 0.0036 35.0 17.0 47 167-213 2012-2058(3245)
35 4emc_A Monopolin complex subun 72.5 15 0.0005 29.9 7.7 34 159-192 24-57 (190)
36 3oja_A Leucine-rich immune mol 72.3 23 0.00078 31.8 9.9 42 173-214 425-466 (487)
37 2xv5_A Lamin-A/C; structural p 72.2 20 0.00068 24.7 7.3 33 182-214 18-50 (74)
38 1x8y_A Lamin A/C; structural p 71.0 24 0.00082 24.7 8.4 39 177-215 36-74 (86)
39 3cve_A Homer protein homolog 1 70.8 23 0.00078 24.4 8.8 52 164-215 16-67 (72)
40 3w03_C DNA repair protein XRCC 70.7 5.4 0.00018 32.4 4.7 33 183-215 152-184 (184)
41 3i00_A HIP-I, huntingtin-inter 70.3 32 0.0011 25.8 9.0 56 156-214 16-78 (120)
42 3bas_A Myosin heavy chain, str 68.5 28 0.00095 24.5 8.3 13 199-211 65-77 (89)
43 2efr_A General control protein 68.5 41 0.0014 26.4 15.0 29 166-194 102-130 (155)
44 3iox_A AGI/II, PA; alpha helix 68.3 76 0.0026 29.4 12.5 13 179-191 69-81 (497)
45 3cvf_A Homer-3, homer protein 67.3 29 0.00099 24.2 8.8 52 164-215 22-73 (79)
46 3htk_A Structural maintenance 66.8 22 0.00076 22.7 8.5 32 161-192 25-56 (60)
47 3s4r_A Vimentin; alpha-helix, 66.6 32 0.0011 24.5 9.5 18 104-121 14-31 (93)
48 3s4r_A Vimentin; alpha-helix, 66.5 32 0.0011 24.5 11.7 33 182-214 55-87 (93)
49 3oja_A Leucine-rich immune mol 66.2 54 0.0018 29.3 11.0 45 168-212 441-485 (487)
50 1gd2_E Transcription factor PA 65.7 16 0.00055 24.9 5.7 35 164-198 31-65 (70)
51 1t6f_A Geminin; coiled-coil, c 64.0 16 0.00056 21.7 4.6 15 162-176 7-21 (37)
52 1ses_A Seryl-tRNA synthetase; 63.1 30 0.001 31.2 8.6 27 184-210 65-91 (421)
53 4emc_A Monopolin complex subun 62.4 50 0.0017 26.8 8.8 35 164-198 22-56 (190)
54 3mov_A Lamin-B1; LMNB1, B-type 61.3 35 0.0012 24.5 7.1 38 177-214 45-82 (95)
55 1wle_A Seryl-tRNA synthetase; 61.2 58 0.002 30.1 10.4 20 187-206 120-139 (501)
56 3u1c_A Tropomyosin alpha-1 cha 61.1 43 0.0015 24.1 11.5 13 160-172 49-61 (101)
57 2avr_X Adhesion A; antiparalle 60.9 50 0.0017 24.8 9.6 43 165-208 47-89 (119)
58 1use_A VAsp, vasodilator-stimu 60.3 28 0.00097 21.7 5.7 23 163-185 8-31 (45)
59 4etp_A Kinesin-like protein KA 59.8 33 0.0011 30.7 8.3 33 161-193 9-41 (403)
60 4ani_A Protein GRPE; chaperone 59.4 30 0.001 28.5 7.3 34 159-192 63-96 (213)
61 1lwu_C Fibrinogen gamma chain; 59.3 30 0.001 30.3 7.7 33 180-212 23-55 (323)
62 3efg_A Protein SLYX homolog; x 59.1 41 0.0014 23.2 7.0 29 167-195 26-54 (78)
63 1nkp_B MAX protein, MYC proto- 58.7 29 0.00099 23.8 6.2 34 183-216 47-80 (83)
64 3jsv_C NF-kappa-B essential mo 57.2 51 0.0018 23.7 8.7 9 185-193 42-50 (94)
65 2v66_B Nuclear distribution pr 54.9 62 0.0021 24.0 9.0 15 159-173 14-28 (111)
66 3sja_C Golgi to ER traffic pro 54.8 31 0.0011 23.2 5.4 20 195-214 37-56 (65)
67 2v4h_A NF-kappa-B essential mo 53.9 65 0.0022 23.9 10.0 23 193-215 86-108 (110)
68 1go4_E MAD1 (mitotic arrest de 53.9 61 0.0021 23.6 7.5 19 197-215 75-93 (100)
69 3u06_A Protein claret segregat 53.9 32 0.0011 31.0 7.1 44 159-202 7-50 (412)
70 3viq_B Mating-type switching p 53.7 56 0.0019 23.1 8.1 56 157-214 10-65 (85)
71 1m1j_C Fibrinogen gamma chain; 53.1 77 0.0026 28.6 9.5 51 162-212 84-134 (409)
72 1gk4_A Vimentin; intermediate 53.1 53 0.0018 22.7 10.6 38 178-215 35-72 (84)
73 4ani_A Protein GRPE; chaperone 53.1 25 0.00087 29.0 5.8 33 181-213 64-96 (213)
74 2wt7_A Proto-oncogene protein 52.9 45 0.0015 21.8 6.0 13 188-200 42-54 (63)
75 2yy0_A C-MYC-binding protein; 52.4 29 0.001 22.2 4.9 7 164-170 21-27 (53)
76 1hs7_A Syntaxin VAM3; UP-and-D 52.4 26 0.00089 25.4 5.1 50 159-213 37-87 (97)
77 1gd2_E Transcription factor PA 52.3 37 0.0013 23.0 5.6 31 184-214 37-67 (70)
78 1wt6_A Myotonin-protein kinase 51.9 59 0.002 22.8 6.8 14 182-195 58-71 (81)
79 3mq7_A Bone marrow stromal ant 51.8 73 0.0025 23.9 12.0 29 164-192 73-101 (121)
80 2wt7_A Proto-oncogene protein 51.8 47 0.0016 21.7 6.8 29 184-212 31-59 (63)
81 2dq0_A Seryl-tRNA synthetase; 51.6 60 0.002 29.5 8.6 6 113-118 31-36 (455)
82 1f5n_A Interferon-induced guan 51.5 1.4E+02 0.0049 28.0 11.5 19 194-212 564-582 (592)
83 3mq9_A Bone marrow stromal ant 51.5 70 0.0024 28.4 9.1 14 108-121 399-412 (471)
84 1deb_A APC protein, adenomatou 51.5 45 0.0015 21.3 7.4 37 159-195 14-50 (54)
85 2lw1_A ABC transporter ATP-bin 51.3 54 0.0018 22.8 6.6 52 158-209 25-82 (89)
86 1wlq_A Geminin; coiled-coil; 2 51.0 47 0.0016 23.4 6.0 18 162-179 38-55 (83)
87 1nlw_A MAD protein, MAX dimeri 50.8 41 0.0014 23.2 5.8 34 182-215 46-79 (80)
88 3tnu_A Keratin, type I cytoske 50.8 75 0.0026 23.7 11.6 36 180-215 88-123 (131)
89 3qne_A Seryl-tRNA synthetase, 50.6 67 0.0023 29.7 8.8 9 112-120 32-40 (485)
90 1ci6_A Transcription factor AT 50.3 51 0.0017 21.6 6.6 19 184-202 38-56 (63)
91 2fxo_A Myosin heavy chain, car 50.2 76 0.0026 23.6 13.8 39 176-214 83-121 (129)
92 1s1c_X RHO-associated, coiled- 50.0 24 0.00082 24.2 4.3 30 160-189 4-33 (71)
93 3ol1_A Vimentin; structural ge 50.0 74 0.0025 23.4 12.5 21 187-207 87-107 (119)
94 3vem_A Helicase protein MOM1; 49.1 80 0.0027 23.5 7.7 16 192-207 70-85 (115)
95 3i00_A HIP-I, huntingtin-inter 49.0 81 0.0028 23.5 10.0 19 192-210 101-119 (120)
96 3uul_A Utrophin; spectrin repe 49.0 64 0.0022 22.4 8.4 32 183-214 78-109 (118)
97 1uii_A Geminin; human, DNA rep 48.9 66 0.0023 22.6 6.6 28 183-210 46-73 (83)
98 4e61_A Protein BIM1; EB1-like 48.5 56 0.0019 24.1 6.4 16 183-198 25-40 (106)
99 3m91_A Proteasome-associated A 48.4 51 0.0017 21.0 6.6 19 177-195 31-49 (51)
100 3qne_A Seryl-tRNA synthetase, 48.3 79 0.0027 29.2 8.9 17 105-121 32-48 (485)
101 4b4t_K 26S protease regulatory 48.3 28 0.00094 31.5 5.8 41 170-210 50-90 (428)
102 3q0x_A Centriole protein; cent 47.3 72 0.0025 26.5 7.7 47 161-207 177-223 (228)
103 3etw_A Adhesin A; antiparallel 46.2 91 0.0031 23.3 9.6 43 164-207 46-88 (119)
104 1g6u_A Domain swapped dimer; d 46.1 30 0.001 21.1 3.9 26 163-188 21-46 (48)
105 1wle_A Seryl-tRNA synthetase; 45.5 1.5E+02 0.0052 27.3 10.4 13 106-118 70-82 (501)
106 1t2k_D Cyclic-AMP-dependent tr 45.5 59 0.002 21.0 6.8 18 193-210 39-56 (61)
107 2dq0_A Seryl-tRNA synthetase; 44.9 83 0.0028 28.6 8.5 17 105-121 30-46 (455)
108 3htk_A Structural maintenance 44.9 57 0.002 20.7 6.7 26 190-215 33-58 (60)
109 2eqb_B RAB guanine nucleotide 44.7 86 0.0029 22.7 8.7 18 197-214 76-93 (97)
110 1gk6_A Vimentin; intermediate 44.7 48 0.0017 21.5 5.1 30 184-213 15-44 (59)
111 3aon_A V-type sodium ATPase su 44.4 75 0.0026 25.9 7.4 47 161-214 16-62 (217)
112 1afo_A Glycophorin A; integral 44.4 17 0.00059 22.1 2.5 17 92-108 21-37 (40)
113 3okq_A BUD site selection prot 44.2 50 0.0017 25.6 5.8 12 196-207 89-100 (141)
114 2d9d_A BAG family molecular ch 44.0 29 0.00099 24.6 4.0 29 190-218 27-55 (89)
115 1fxk_A Prefoldin; archaeal pro 43.8 72 0.0025 22.3 6.5 29 186-214 75-103 (107)
116 3rrk_A V-type ATPase 116 kDa s 43.6 90 0.0031 26.7 8.3 47 162-208 226-273 (357)
117 1uix_A RHO-associated kinase; 43.5 32 0.0011 23.5 4.2 14 190-203 18-31 (71)
118 3sjb_C Golgi to ER traffic pro 43.2 90 0.0031 22.4 7.2 21 183-203 63-83 (93)
119 2wvr_A Geminin; DNA replicatio 43.0 61 0.0021 26.6 6.4 21 186-206 142-162 (209)
120 1ses_A Seryl-tRNA synthetase; 43.0 95 0.0033 27.8 8.5 13 106-118 28-40 (421)
121 4e61_A Protein BIM1; EB1-like 42.9 87 0.003 23.0 6.7 8 163-170 26-33 (106)
122 1nfn_A Apolipoprotein E3; lipi 42.7 45 0.0015 26.7 5.7 55 160-214 104-160 (191)
123 2w6b_A RHO guanine nucleotide 42.6 68 0.0023 20.8 5.6 17 160-176 15-31 (56)
124 1nkp_A C-MYC, MYC proto-oncoge 42.1 64 0.0022 22.5 5.8 34 183-216 52-85 (88)
125 2dgc_A Protein (GCN4); basic d 41.7 58 0.002 21.4 5.2 30 184-213 31-60 (63)
126 3azd_A Short alpha-tropomyosin 41.0 14 0.00048 22.0 1.8 30 184-213 5-34 (37)
127 2b5u_A Colicin E3; high resolu 41.0 2.3E+02 0.0078 26.4 10.6 50 164-213 316-365 (551)
128 3m9b_A Proteasome-associated A 40.5 44 0.0015 28.3 5.4 6 166-171 72-77 (251)
129 2wt7_B Transcription factor MA 40.3 98 0.0033 22.0 9.8 16 187-202 66-81 (90)
130 3tnu_B Keratin, type II cytosk 40.2 1.1E+02 0.0038 22.6 12.5 35 181-215 87-121 (129)
131 2lw1_A ABC transporter ATP-bin 39.9 91 0.0031 21.6 8.6 6 184-189 37-42 (89)
132 3plt_A Sphingolipid long chain 39.9 1.6E+02 0.0056 24.5 14.5 41 162-202 131-173 (234)
133 2bzb_A Conserved domain protei 39.8 24 0.00083 23.4 3.0 16 195-210 34-49 (62)
134 3lss_A Seryl-tRNA synthetase; 39.6 1.6E+02 0.0054 27.1 9.5 10 112-121 36-45 (484)
135 1l8d_A DNA double-strand break 39.5 74 0.0025 22.6 6.0 35 166-200 68-102 (112)
136 2c0s_A Conserved domain protei 39.4 53 0.0018 21.8 4.7 17 195-211 34-50 (64)
137 1uii_A Geminin; human, DNA rep 38.7 83 0.0028 22.1 5.8 13 163-175 47-59 (83)
138 2wt7_B Transcription factor MA 38.5 77 0.0026 22.6 5.7 36 160-195 53-88 (90)
139 2xdj_A Uncharacterized protein 37.4 1E+02 0.0035 21.4 6.3 43 162-204 27-69 (83)
140 2no2_A HIP-I, huntingtin-inter 37.3 1.2E+02 0.004 22.1 13.5 42 162-203 54-102 (107)
141 2kxh_B Peptide of FAR upstream 36.7 17 0.00058 20.9 1.5 14 57-70 10-23 (31)
142 3swk_A Vimentin; cytoskeleton, 36.7 1.1E+02 0.0036 21.4 6.7 60 155-214 21-80 (86)
143 1go4_E MAD1 (mitotic arrest de 36.1 59 0.002 23.6 4.9 32 163-194 13-44 (100)
144 1fxk_A Prefoldin; archaeal pro 35.7 1E+02 0.0035 21.5 6.2 23 182-204 78-100 (107)
145 3uun_A Dystrophin; triple heli 35.6 1.1E+02 0.0036 21.1 8.8 31 183-213 78-108 (119)
146 1m1j_B Fibrinogen beta chain; 33.9 2.8E+02 0.0095 25.4 14.8 19 184-202 169-187 (464)
147 3o0z_A RHO-associated protein 33.0 1.8E+02 0.0062 23.0 15.4 41 163-203 98-138 (168)
148 3s9g_A Protein hexim1; cyclin 32.9 1.4E+02 0.0048 21.7 8.8 24 189-212 64-87 (104)
149 1lwu_C Fibrinogen gamma chain; 32.7 1.5E+02 0.005 25.9 7.7 8 184-191 41-48 (323)
150 2wuj_A Septum site-determining 32.6 45 0.0015 21.5 3.4 15 199-213 36-50 (57)
151 3qwe_A GMIP, GEM-interacting p 32.4 1.3E+02 0.0043 25.8 7.1 12 199-210 142-153 (279)
152 2pjw_H Uncharacterized protein 32.4 1.3E+02 0.0045 21.2 6.9 50 156-205 36-85 (88)
153 3twe_A Alpha4H; unknown functi 32.4 55 0.0019 17.7 3.1 19 160-178 6-24 (27)
154 1x8y_A Lamin A/C; structural p 32.1 1.3E+02 0.0043 20.9 7.9 18 187-204 63-80 (86)
155 3efg_A Protein SLYX homolog; x 32.0 1.2E+02 0.0042 20.7 6.6 34 181-214 26-59 (78)
156 2ke4_A CDC42-interacting prote 31.7 1.4E+02 0.0048 21.3 7.5 25 190-214 62-86 (98)
157 2wvr_A Geminin; DNA replicatio 31.6 1.3E+02 0.0043 24.7 6.6 36 176-211 108-143 (209)
158 1hjb_A Ccaat/enhancer binding 31.3 1.4E+02 0.0047 21.0 7.5 17 186-202 53-69 (87)
159 2nrj_A HBL B protein; enteroto 30.7 1.1E+02 0.0038 26.6 6.7 24 177-200 170-193 (346)
160 2l5g_B Putative uncharacterize 30.5 96 0.0033 19.0 4.9 11 184-194 24-34 (42)
161 3r2p_A Apolipoprotein A-I; amp 30.3 88 0.003 24.5 5.5 30 164-193 113-143 (185)
162 1ykh_B RNA polymerase II holoe 30.2 1E+02 0.0035 23.2 5.6 34 162-195 92-125 (132)
163 1fio_A SSO1 protein; four heli 30.2 1.9E+02 0.0064 22.3 12.0 24 188-211 82-105 (196)
164 2w6a_A ARF GTPase-activating p 29.8 1.2E+02 0.0041 20.0 6.5 34 177-210 21-54 (63)
165 1yke_B RNA polymerase II holoe 29.6 1E+02 0.0035 23.9 5.6 34 162-195 92-125 (151)
166 2no2_A HIP-I, huntingtin-inter 29.4 1.6E+02 0.0056 21.3 13.4 39 171-209 56-94 (107)
167 2dq3_A Seryl-tRNA synthetase; 29.2 89 0.0031 28.0 5.9 17 161-177 74-90 (425)
168 4etp_A Kinesin-like protein KA 29.2 1.6E+02 0.0054 26.2 7.6 8 164-171 26-33 (403)
169 2yf2_A C4B binding protein; im 29.1 1.2E+02 0.0041 19.7 5.1 19 182-200 40-58 (65)
170 3bas_A Myosin heavy chain, str 29.1 1.5E+02 0.005 20.6 10.5 22 181-202 33-54 (89)
171 2j5u_A MREC protein; bacterial 28.9 34 0.0012 28.7 2.9 16 199-214 45-60 (255)
172 1gs9_A Apolipoprotein E, APOE4 28.7 96 0.0033 24.2 5.4 55 160-214 104-160 (165)
173 1l8d_A DNA double-strand break 28.6 1.5E+02 0.0053 20.8 6.7 31 184-214 65-95 (112)
174 3v1a_A Computational design, M 28.5 75 0.0026 20.0 3.7 21 183-203 27-47 (48)
175 2ve7_A Kinetochore protein HEC 28.4 59 0.002 28.0 4.5 14 161-174 191-204 (315)
176 3s9g_A Protein hexim1; cyclin 28.4 1.7E+02 0.0058 21.2 7.7 10 112-121 36-45 (104)
177 3m91_A Proteasome-associated A 28.1 1.2E+02 0.004 19.3 6.5 26 161-186 22-47 (51)
178 1gk4_A Vimentin; intermediate 27.6 1.5E+02 0.0051 20.3 8.9 15 189-203 63-77 (84)
179 3swy_A Cyclic nucleotide-gated 27.3 1.2E+02 0.004 18.9 5.4 20 181-200 10-29 (46)
180 2zxx_A Geminin; coiled-coil, c 26.9 1.6E+02 0.0055 20.4 5.7 15 162-176 34-48 (79)
181 3swf_A CGMP-gated cation chann 26.8 1.3E+02 0.0043 20.7 5.0 18 182-199 13-30 (74)
182 1deq_A Fibrinogen (alpha chain 26.7 3.5E+02 0.012 24.2 13.4 54 163-216 135-191 (390)
183 4ad8_A DNA repair protein RECN 26.7 2.2E+02 0.0077 25.5 8.3 12 198-209 228-239 (517)
184 2dq3_A Seryl-tRNA synthetase; 26.5 65 0.0022 28.9 4.5 22 185-206 77-98 (425)
185 1qzv_F Plant photosystem I: su 26.3 26 0.00087 27.0 1.5 39 160-202 18-56 (154)
186 3vlc_E Golgi to ER traffic pro 25.8 70 0.0024 23.0 3.7 14 199-212 65-78 (94)
187 2l7b_A Apolipoprotein E, APO-E 25.7 92 0.0031 26.9 5.2 55 160-214 112-168 (307)
188 4dk0_A Putative MACA; alpha-ha 25.3 1.5E+02 0.0051 25.1 6.5 11 183-193 129-139 (369)
189 1cxz_B Protein (PKN); protein- 25.1 1.8E+02 0.0062 20.4 6.0 29 189-217 55-83 (86)
190 3q0x_A Centriole protein; cent 24.9 2.9E+02 0.01 22.8 8.1 50 160-209 169-218 (228)
191 2v71_A Nuclear distribution pr 24.9 2.7E+02 0.0092 22.3 13.0 11 75-85 4-14 (189)
192 3v86_A De novo design helix; c 24.9 90 0.0031 16.8 3.2 9 164-172 9-17 (27)
193 3s84_A Apolipoprotein A-IV; fo 24.4 3.1E+02 0.011 22.9 11.8 38 162-199 44-82 (273)
194 3o0z_A RHO-associated protein 24.2 2.6E+02 0.0091 22.0 13.2 52 147-198 89-140 (168)
195 3trt_A Vimentin; cytoskeleton, 23.9 1.6E+02 0.0055 19.4 10.5 40 163-202 36-75 (77)
196 2aze_B Transcription factor E2 23.9 1.8E+02 0.0062 21.0 5.8 33 164-196 8-40 (106)
197 3lss_A Seryl-tRNA synthetase; 23.9 4.2E+02 0.014 24.2 9.6 17 105-121 36-52 (484)
198 3kin_B Kinesin heavy chain; mo 23.8 88 0.003 23.0 4.1 17 183-199 96-112 (117)
199 3he4_A Synzip6; heterodimeric 23.6 1.4E+02 0.0048 18.6 5.1 11 185-195 40-50 (56)
200 4b4t_K 26S protease regulatory 23.6 1.2E+02 0.0043 27.1 5.8 38 177-214 50-87 (428)
201 1dkg_A Nucleotide exchange fac 23.5 1.1E+02 0.0038 24.6 5.0 30 163-192 43-76 (197)
202 1nlw_A MAD protein, MAX dimeri 23.3 1.3E+02 0.0045 20.5 4.7 11 183-193 68-78 (80)
203 3tnu_A Keratin, type I cytoske 22.9 2.3E+02 0.0079 20.9 7.2 26 184-209 85-110 (131)
204 2zxx_A Geminin; coiled-coil, c 22.9 1.5E+02 0.005 20.6 4.8 14 159-172 38-51 (79)
205 3mud_A DNA repair protein XRCC 22.9 1.4E+02 0.0047 23.9 5.2 30 184-213 136-165 (175)
206 1a92_A Delta antigen; leucine 22.8 1.2E+02 0.0042 19.1 3.9 20 162-181 14-33 (50)
207 2xnx_M M protein, M1-BC1; cell 22.8 1.5E+02 0.0053 22.9 5.4 41 165-205 69-109 (146)
208 2v4h_A NF-kappa-B essential mo 22.7 2.3E+02 0.0079 20.8 12.5 30 185-214 64-100 (110)
209 3rvy_A ION transport protein; 22.6 60 0.002 26.8 3.3 22 93-114 215-237 (285)
210 3fx0_A NF-kappa-B essential mo 22.4 14 0.00048 26.8 -0.6 43 162-208 38-80 (96)
211 3fpp_A Macrolide-specific effl 22.4 1.3E+02 0.0044 25.2 5.5 85 113-201 69-153 (341)
212 3ilw_A DNA gyrase subunit A; D 22.4 1.7E+02 0.006 26.8 6.5 21 93-114 360-380 (470)
213 4fye_A SIDF, inhibitor of grow 22.2 4E+02 0.014 24.0 8.6 40 161-200 522-561 (761)
214 3uul_A Utrophin; spectrin repe 22.2 1.8E+02 0.0061 19.9 5.4 25 172-196 46-70 (118)
215 1nkp_B MAX protein, MYC proto- 22.1 1.2E+02 0.004 20.6 4.3 8 184-191 69-76 (83)
216 1joc_A EEA1, early endosomal a 21.9 2.4E+02 0.0082 20.7 8.2 12 163-174 19-30 (125)
217 2akf_A Coronin-1A; coiled coil 21.8 1.2E+02 0.0041 17.1 4.2 8 195-202 18-25 (32)
218 1s94_A S-syntaxin; three helix 21.7 2.7E+02 0.0094 21.3 13.0 26 187-212 123-148 (180)
219 1hx1_B BAG-1, BAG-family molec 21.6 2.2E+02 0.0076 21.1 5.8 21 186-206 52-72 (114)
220 3s84_A Apolipoprotein A-IV; fo 21.6 3E+02 0.01 23.0 7.6 18 182-199 43-60 (273)
221 3sjb_C Golgi to ER traffic pro 21.3 1.5E+02 0.0051 21.2 4.7 28 159-186 53-80 (93)
222 2inr_A DNA topoisomerase 4 sub 21.3 1.9E+02 0.0063 27.0 6.5 20 93-113 398-417 (514)
223 1fxk_C Protein (prefoldin); ar 21.1 2.4E+02 0.0083 20.4 6.4 30 182-211 101-130 (133)
224 1fxk_C Protein (prefoldin); ar 21.0 2.4E+02 0.0083 20.4 7.7 19 178-196 104-122 (133)
225 1deq_A Fibrinogen (alpha chain 21.0 3.9E+02 0.014 23.9 8.3 18 190-207 102-119 (390)
226 3tnu_B Keratin, type II cytosk 21.0 2.5E+02 0.0086 20.6 8.5 25 185-209 84-108 (129)
227 3a7o_A Autophagy protein 16; c 20.9 2.1E+02 0.007 19.5 8.4 42 162-210 32-73 (75)
228 1zvu_A Topoisomerase IV subuni 20.7 1.8E+02 0.0062 28.2 6.5 41 159-199 406-446 (716)
229 1dh3_A Transcription factor CR 20.5 1.7E+02 0.0059 18.5 4.8 15 184-198 37-51 (55)
230 3l4q_C Phosphatidylinositol 3- 20.4 3.2E+02 0.011 21.5 7.8 51 162-212 96-146 (170)
231 3he5_B Synzip2; heterodimeric 20.2 1.6E+02 0.0056 18.1 6.4 24 182-205 23-46 (52)
232 1hjb_A Ccaat/enhancer binding 20.2 2.3E+02 0.0079 19.8 6.6 14 160-173 48-61 (87)
233 2e7s_A RAB guanine nucleotide 20.1 2.9E+02 0.01 21.0 7.4 10 161-170 73-82 (135)
No 1
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.26 E-value=0.21 Score=38.96 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
+..++++++.|+...+.++.+.+...+.++++.+.+.++++.|..+..+|+..+.
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555566666666666666666666666666655443
No 2
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.54 E-value=5.8 Score=44.79 Aligned_cols=56 Identities=18% Similarity=0.326 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
++++++++++.++++..+++..++..+..+....+.++.+|+....|.+.++.+.+
T Consensus 2011 Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A 2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888889999999999999999999999999999998887765
No 3
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.53 E-value=0.27 Score=38.32 Aligned_cols=55 Identities=22% Similarity=0.190 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
...+.+.|+.+++++++++...+.++...+-+.+.+.++..+|.++++.|+.+..
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666667777777777666666666543
No 4
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=94.24 E-value=0.59 Score=32.82 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
...+.++.+++..++.....+.++.+|++...++..++|+..+.....+.+|+
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777788888888888999999999999999999999999988888776
No 5
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=94.22 E-value=0.1 Score=34.23 Aligned_cols=34 Identities=21% Similarity=0.452 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
.|+++||..-+.|...|+.|.++++.++.++.++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4677777777777788888888888888888764
No 6
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=94.15 E-value=0.57 Score=34.17 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLED 205 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e 205 (218)
.++++|+++=+..+.++...+.+...|..|-+..-++|+.+.-+
T Consensus 25 ~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~q 68 (96)
T 3q8t_A 25 QELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQ 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444433333
No 7
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=93.37 E-value=0.9 Score=33.17 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
...+.++.+++..+....+.+.++.+|++...++..++|+..+....++..++
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe 75 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLE 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777778889999999999999999988887777766554
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.37 E-value=0.42 Score=48.61 Aligned_cols=44 Identities=11% Similarity=0.158 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 170 ECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 170 el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
|.++.+.+++..+.+++.++++.+.+.+|++.+.++++++++++
T Consensus 978 e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L 1021 (1080)
T 2dfs_A 978 EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555666666666666666666655555554443
No 9
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=93.13 E-value=1.1 Score=35.45 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=46.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 153 LQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 153 ~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
...+.+.+..++..|+.+++++.+.+.....++.+|+-|..-+...-.+|.+||..|=+..
T Consensus 73 L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 73 LQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677788888888888888888888888888888888888888888887765443
No 10
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=92.16 E-value=1.7 Score=29.99 Aligned_cols=57 Identities=19% Similarity=0.160 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
+..-+..|+++|+.++.+++..+.-+.-=-|-+|.|+.|.=.+.-|++-|+++++.+
T Consensus 16 ~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l 72 (75)
T 3a7o_A 16 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDL 72 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 344566778888887777777666555555678888888888888999999988754
No 11
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.28 E-value=2.4 Score=30.98 Aligned_cols=52 Identities=12% Similarity=0.173 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
..+.++.+++..+....+++.++..|.+...++..+.|+..+.....+..++
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLe 75 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLL 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666667777777777777777777777666666555443
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.90 E-value=4.1 Score=37.56 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
.+.++.+++++++.++.+..+.+.+.++++.+...+...++.+|.++++.++
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 523 RETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3344444444444445554555555555555555555555555555544433
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.33 E-value=8.5 Score=35.42 Aligned_cols=57 Identities=11% Similarity=0.090 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 158 STLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 158 ~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
....+++++.+.+++..+++....+..++..|++.+-+..|-+.+..|..++.+.++
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 526 QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444555555555555555555555566666666666665555555555555443
No 14
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=90.12 E-value=3.7 Score=29.03 Aligned_cols=51 Identities=25% Similarity=0.331 Sum_probs=31.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 157 ISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 157 ~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
|+-+.-|+++||.+-.. ...+.+.++.+.+.+..|..+|.+|++.-++.+.
T Consensus 22 I~lLqmEieELKekN~~-------L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNS-------LSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554443 3456666667777777777888888776666554
No 15
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=88.43 E-value=3 Score=29.48 Aligned_cols=52 Identities=29% Similarity=0.340 Sum_probs=42.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 155 EEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDN 206 (218)
Q Consensus 155 ~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~ 206 (218)
-|+..++-.+++++.|=-..++.|++.+.++..|+.|.++=..|..||.++.
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455677778888888778888899999999999999999998888886553
No 16
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.36 E-value=4.6 Score=31.85 Aligned_cols=48 Identities=15% Similarity=0.110 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDN 206 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~ 206 (218)
.+..+...++.++..++.+++.+.+.++.++-....++-+++.+-+..
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl 119 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKL 119 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444433333333333333333333333333333333
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.29 E-value=10 Score=31.68 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQ 207 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~ 207 (218)
|++.++.++...++++......++.+++..+.+...++.+..+..
T Consensus 98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444444444444444444433333
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.80 E-value=3.3 Score=42.07 Aligned_cols=12 Identities=33% Similarity=0.393 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHh
Q 027820 202 LLEDNQNLQKQA 213 (218)
Q Consensus 202 L~~e~~~l~~~l 213 (218)
|.+|+++|+.++
T Consensus 1028 L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 1028 LKEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 19
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.35 E-value=12 Score=31.31 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 172 EQKDKQLETADAHVIALQKQSADLLLEYD 200 (218)
Q Consensus 172 ~~~~kel~~~~~d~~aLKKQae~l~~EYd 200 (218)
+.+++++...+..++.++...+....++|
T Consensus 121 e~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 149 (256)
T 3na7_A 121 KRKSEKQEDLKKEMLELEKLALELESLVE 149 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444443333433
No 20
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=87.15 E-value=7.3 Score=28.71 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=27.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 156 EISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 156 e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL 202 (218)
++..++..+++++..+....++.+.+.++++.+|.+...++.+++.|
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666665666666666666666666655555544
No 21
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=86.16 E-value=11 Score=29.81 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027820 193 ADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 193 e~l~~EYdrL~~e~~~l~~ 211 (218)
..+...+.++..+.+.+.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~ 279 (284)
T 1c1g_A 261 YAQKLKYKAISEELDHALN 279 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 22
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=84.99 E-value=3.1 Score=28.78 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 164 LKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 164 ~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
+.+|+..++.+.+++...+.-++.+.++....
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ek 52 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666655555555555555544443
No 23
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=84.63 E-value=4.5 Score=27.97 Aligned_cols=12 Identities=25% Similarity=0.141 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 027820 190 KQSADLLLEYDR 201 (218)
Q Consensus 190 KQae~l~~EYdr 201 (218)
.....|+.++|+
T Consensus 54 ~eI~~LqseLDK 65 (72)
T 3nmd_A 54 ELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444444
No 24
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=84.55 E-value=15 Score=29.89 Aligned_cols=21 Identities=14% Similarity=0.029 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027820 192 SADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 192 ae~l~~EYdrL~~e~~~l~~~ 212 (218)
...++++...|.+.+..++..
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ 110 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKY 110 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544433
No 25
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=82.02 E-value=8.8 Score=29.34 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNL 209 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l 209 (218)
..-.+++|+-+.+..+.+++-...-...=|.....|+-.|+.|..||++.
T Consensus 53 ~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~LfqeYd~~ 102 (130)
T 3cl3_D 53 HSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNH 102 (130)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777766655555567888999999999999999974
No 26
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=82.00 E-value=9.2 Score=28.18 Aligned_cols=57 Identities=11% Similarity=0.016 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
.+.=+++-||..+++.++.+....++..--.+..+.+....+.|..+...++.++..
T Consensus 27 al~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 27 NFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888877777777777777777777777777777777777777654
No 27
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=81.85 E-value=12 Score=26.91 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 158 STLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 158 ~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
+.+..+++.++.+.+.++.+-..-..+.-+++.|.-.++.+-+.+...+...+.+|+.
T Consensus 35 ~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdk 92 (96)
T 3q8t_A 35 KVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666655555556677777777777777777777777766666653
No 28
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=81.15 E-value=36 Score=31.89 Aligned_cols=58 Identities=22% Similarity=0.217 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHhcccC
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRL-----------------LEDNQNLQKQAQGYK 217 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL-----------------~~e~~~l~~~l~~~~ 217 (218)
|+..+.-||.++...-..++..+..++.+...+..|...-|-- .+.|+.+|+||++.+
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVI 189 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHh
Confidence 4444444555444333333334444444444444444433311 356778888887654
No 29
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=79.96 E-value=20 Score=28.18 Aligned_cols=39 Identities=26% Similarity=0.278 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDR 201 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdr 201 (218)
++..|...++..+....-+++.+.-|.+..+.+..+.+.
T Consensus 78 qIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 78 EIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433344444444444444444444333
No 30
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=78.94 E-value=8.7 Score=27.34 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027820 193 ADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 193 e~l~~EYdrL~~e~~~l~~ 211 (218)
+...+.|=+++-+||.+++
T Consensus 37 ~~~~~~hI~~Lh~YNeiKD 55 (85)
T 3viq_B 37 KQTVQKHIDLLHTYNEIRD 55 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 3334445555555555544
No 31
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=76.71 E-value=16 Score=25.24 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027820 167 LKSECEQKDKQLETADAHVIALQ 189 (218)
Q Consensus 167 Lk~el~~~~kel~~~~~d~~aLK 189 (218)
...++....+.+...+.|++...
T Consensus 39 ~E~ev~~L~kKiq~lE~eld~~e 61 (81)
T 1ic2_A 39 LEDELVALQKKLKGTEDELDKYS 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334443333
No 32
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=74.26 E-value=8.1 Score=21.94 Aligned_cols=8 Identities=25% Similarity=0.368 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 027820 182 DAHVIALQ 189 (218)
Q Consensus 182 ~~d~~aLK 189 (218)
+-++.+||
T Consensus 22 kfeiaalk 29 (33)
T 4dzn_A 22 KFEIAALK 29 (33)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34454544
No 33
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=73.99 E-value=20 Score=25.18 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=7.5
Q ss_pred hhhhHHHHHHHHHHHHH
Q 027820 157 ISTLSVNLKKLKSECEQ 173 (218)
Q Consensus 157 ~~~l~~e~~kLk~el~~ 173 (218)
++.++.++..|..+.+.
T Consensus 29 ieELKekN~~L~~e~~e 45 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 34
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=73.84 E-value=1.1e+02 Score=35.01 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 167 LKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 167 Lk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
++.++++.+++++.++..+.+.+.+...++..-.+|.+++++...+-
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek 2058 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRET 2058 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777777777778888887788888877765443
No 35
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=72.50 E-value=15 Score=29.93 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQS 192 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQa 192 (218)
++..|+..|..+++.++.+++..+..+..++.|+
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444455555555554444444444444444444
No 36
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.29 E-value=23 Score=31.83 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 173 QKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 173 ~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
+.+.+..+.+.+.+..+.+.+.+.+|-+|+.++.+++..+++
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 333445556667777777777777777777666666655443
No 37
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=72.24 E-value=20 Score=24.67 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 182 DAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
+.++..+|...+....||..|++=.-.|.-...
T Consensus 18 E~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIa 50 (74)
T 2xv5_A 18 EREMAEMRARMQQQLDEYQELLDIKLALDMEIH 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666667777777666555554443
No 38
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=71.05 E-value=24 Score=24.72 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 177 QLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 177 el~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
.+...+.++..+|...+....||..|++=.-.|.-...+
T Consensus 36 ~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIat 74 (86)
T 1x8y_A 36 LLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 333345666667777788888888888776666555443
No 39
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=70.82 E-value=23 Score=24.36 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 164 LKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 164 ~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
+..|+..+...+..+.....+-+.++...+.+..-.|.=..|...++..+.+
T Consensus 16 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 16 NKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444444554445555556677788888888888888888888888877753
No 40
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=70.66 E-value=5.4 Score=32.41 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
..+..|+.+.+.+++++|||..|.++.+++++.
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlEk 184 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGRFEK 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356677888889999999999999999988863
No 41
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=70.34 E-value=32 Score=25.83 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=33.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhc
Q 027820 156 EISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRL-------LEDNQNLQKQAQ 214 (218)
Q Consensus 156 e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL-------~~e~~~l~~~l~ 214 (218)
.|+.+..+++.|+.+++...-+ +..-+..|+.|+..|..|.+.- ..|++.|+.+++
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E---~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTE---SQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677777666654322 4556677778777777776643 334555555443
No 42
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=68.55 E-value=28 Score=24.50 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 027820 199 YDRLLEDNQNLQK 211 (218)
Q Consensus 199 YdrL~~e~~~l~~ 211 (218)
.++|......|..
T Consensus 65 ~~~L~~~K~eLE~ 77 (89)
T 3bas_A 65 VEELLSKNYHLEN 77 (89)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344333333333
No 43
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=68.54 E-value=41 Score=26.39 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 166 KLKSECEQKDKQLETADAHVIALQKQSAD 194 (218)
Q Consensus 166 kLk~el~~~~kel~~~~~d~~aLKKQae~ 194 (218)
+|+.++..++.++...+.....+..-..+
T Consensus 102 kLEk~id~lEd~L~~~Kek~~~i~~eLd~ 130 (155)
T 2efr_A 102 KLEKSIDDLEDELYAQKLKYKAISEEMKQ 130 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433333333333333333333333
No 44
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=68.26 E-value=76 Score=29.43 Aligned_cols=13 Identities=23% Similarity=0.233 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 027820 179 ETADAHVIALQKQ 191 (218)
Q Consensus 179 ~~~~~d~~aLKKQ 191 (218)
++-+.++++-+++
T Consensus 69 ~kY~~dlakY~~~ 81 (497)
T 3iox_A 69 AKYQADLAKYQKD 81 (497)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334455444444
No 45
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=67.34 E-value=29 Score=24.24 Aligned_cols=52 Identities=15% Similarity=0.088 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 164 LKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 164 ~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
+..|+..+...+..+.....+-+.++...+.+..-.|.=..|...++..+.+
T Consensus 22 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4445555555555555566677777888888888888778888888877653
No 46
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=66.83 E-value=22 Score=22.73 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 161 SVNLKKLKSECEQKDKQLETADAHVIALQKQS 192 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~~~~d~~aLKKQa 192 (218)
..+.++++..+....+.+++...++.-++.|.
T Consensus 25 ~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 25 TDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555544
No 47
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=66.60 E-value=32 Score=24.48 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 027820 104 IIDRMHHYLTKLIRLRSN 121 (218)
Q Consensus 104 vI~R~~~li~~l~~l~~~ 121 (218)
.-+|+.++|.....++.+
T Consensus 14 LNdRlAsyIdKVR~LEqq 31 (93)
T 3s4r_A 14 LNDRFANLIDKVRFLEQQ 31 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346888888887777666
No 48
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=66.48 E-value=32 Score=24.47 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 182 DAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
+..+..|++|.+.+..+-.++.-|..+++..++
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666655555555555555555444
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=66.21 E-value=54 Score=29.32 Aligned_cols=45 Identities=16% Similarity=0.012 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 168 KSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 168 k~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
..+++..+++-.+.+..++-+.++.+.-...|-.+....+.+-.|
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQ 485 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHh
Confidence 333333333333344444444444444444444444444444333
No 50
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=65.75 E-value=16 Score=24.90 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 164 LKKLKSECEQKDKQLETADAHVIALQKQSADLLLE 198 (218)
Q Consensus 164 ~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~E 198 (218)
+.+|+.++..++........+.+.|+.|...+..|
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555444333333344445555555554444
No 51
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=64.00 E-value=16 Score=21.70 Aligned_cols=15 Identities=47% Similarity=0.508 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDK 176 (218)
Q Consensus 162 ~e~~kLk~el~~~~k 176 (218)
.|+++|-++|+.++.
T Consensus 7 ~ENekLhk~ie~Kde 21 (37)
T 1t6f_A 7 KENEKLHKEIEQKDN 21 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355666666666543
No 52
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=63.12 E-value=30 Score=31.18 Aligned_cols=27 Identities=26% Similarity=0.104 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
+.++++.++..+..+-..+.++...++
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (421)
T 1ses_A 65 EKEALIARGKALGEEAKRLEEALREKE 91 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333333
No 53
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=62.36 E-value=50 Score=26.80 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 164 LKKLKSECEQKDKQLETADAHVIALQKQSADLLLE 198 (218)
Q Consensus 164 ~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~E 198 (218)
+.+|..|...+..+++.++.++++|++|.+.+...
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444444455555444444333
No 54
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=61.34 E-value=35 Score=24.46 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 177 QLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 177 el~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.+...+.++..+|...+....||..|++=.-.|.-.+.
T Consensus 45 ~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 45 MLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334556666777778888888888776666654443
No 55
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=61.16 E-value=58 Score=30.10 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027820 187 ALQKQSADLLLEYDRLLEDN 206 (218)
Q Consensus 187 aLKKQae~l~~EYdrL~~e~ 206 (218)
+|+.++..+..+-..|.++.
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~ 139 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKE 139 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444333333333333
No 56
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=61.08 E-value=43 Score=24.06 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=4.8
Q ss_pred hHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECE 172 (218)
Q Consensus 160 l~~e~~kLk~el~ 172 (218)
+...+..++.+++
T Consensus 49 L~kk~~~lE~eld 61 (101)
T 3u1c_A 49 LEKQLRVTEDSRD 61 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 57
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=60.89 E-value=50 Score=24.79 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 165 KKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQN 208 (218)
Q Consensus 165 ~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~ 208 (218)
.+++.+|.++...+.. ..+..--|.|.++|.+.|+.+..+.++
T Consensus 47 ~~m~~~i~ek~~~i~~-~~~~~~yK~eY~~L~KkYk~~~~~Ld~ 89 (119)
T 2avr_X 47 EQVYNELSQRAQRLQA-EANTRFYKSQYQELASKYEDALKKLEA 89 (119)
T ss_dssp HHHHHHHHHHHHHHHH-HTTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554433322 334445677777887777777666554
No 58
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=60.29 E-value=28 Score=21.72 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=11.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHH
Q 027820 163 NLKKLKSEC-EQKDKQLETADAHV 185 (218)
Q Consensus 163 e~~kLk~el-~~~~kel~~~~~d~ 185 (218)
+++.+|.|| ++..+|+.+.+.++
T Consensus 8 dle~~KqEIL~E~RkElqK~K~EI 31 (45)
T 1use_A 8 DLQRVKQELLEEVKKELQKVKEEI 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 34445555554544
No 59
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=59.76 E-value=33 Score=30.72 Aligned_cols=33 Identities=9% Similarity=0.151 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 161 SVNLKKLKSECEQKDKQLETADAHVIALQKQSA 193 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae 193 (218)
..++++|+.+.++++++++..+.+++.++.+..
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444554444444444444444444444433
No 60
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=59.37 E-value=30 Score=28.51 Aligned_cols=34 Identities=6% Similarity=0.172 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQS 192 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQa 192 (218)
.+..++++|+.++++....+.+..+|.+.+||.+
T Consensus 63 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~ 96 (213)
T 4ani_A 63 AAKAQIAELEAKLSEMEHRYLRLYADFENFRRRT 96 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555444555555555555443
No 61
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=59.27 E-value=30 Score=30.31 Aligned_cols=33 Identities=15% Similarity=0.101 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 180 TADAHVIALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 180 ~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
..+..+..|+.+.+.++...++|......++..
T Consensus 23 ~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 23 SHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555554444444443
No 62
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=59.06 E-value=41 Score=23.19 Aligned_cols=29 Identities=10% Similarity=-0.025 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 167 LKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 167 Lk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
.+.-|++++..+-..+.+++.|+.|...+
T Consensus 26 qE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 26 QEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555554444
No 63
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=58.68 E-value=29 Score=23.80 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
.=+..|+.+.+.+..+.++|..++..|+.++...
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666667777777777777777776654
No 64
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=57.24 E-value=51 Score=23.73 Aligned_cols=9 Identities=33% Similarity=0.353 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 027820 185 VIALQKQSA 193 (218)
Q Consensus 185 ~~aLKKQae 193 (218)
+..||.|++
T Consensus 42 i~vLk~Qv~ 50 (94)
T 3jsv_C 42 VPVLKAQAD 50 (94)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444443
No 65
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=54.88 E-value=62 Score=23.96 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQ 173 (218)
Q Consensus 159 ~l~~e~~kLk~el~~ 173 (218)
.+..|++.++..++.
T Consensus 14 ~L~~E~e~~k~K~~~ 28 (111)
T 2v66_B 14 RLKYEVEALKEKLEH 28 (111)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445555444443
No 66
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=54.82 E-value=31 Score=23.21 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 027820 195 LLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 195 l~~EYdrL~~e~~~l~~~l~ 214 (218)
|.+-+|.|.+|++++.++++
T Consensus 37 L~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 37 NNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555554443
No 67
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=53.93 E-value=65 Score=23.87 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 027820 193 ADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 193 e~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
|.++.|=++|.++...|+.+.+.
T Consensus 86 Ekl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 86 EKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555555443
No 68
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=53.92 E-value=61 Score=23.58 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 027820 197 LEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 197 ~EYdrL~~e~~~l~~~l~~ 215 (218)
++-+.|..|.+.|+..+..
T Consensus 75 ~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555566666655543
No 69
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=53.90 E-value=32 Score=31.01 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL 202 (218)
.+.+|+.+++.++++.+++.+..+.+++.++.|.-..+.+--+|
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l 50 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKEL 50 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555556655555544433333334
No 70
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=53.68 E-value=56 Score=23.09 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 157 ISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 157 ~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
++.+..+..+|+.++.....+++. .|-+..-+.-=.+..+|+.+.|=-+.+-+.+.
T Consensus 10 i~~L~~q~~~L~~ei~~~~a~L~~--~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA 65 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDALAKLKN--RDAKQTVQKHIDLLHTYNEIRDIALGMIGKVA 65 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344455555555555544433321 12222223334456889999887777665544
No 71
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=53.12 E-value=77 Score=28.58 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
+..+++..++.+.+..+...+..+..|+.+.+.++...+.|......+...
T Consensus 84 q~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 84 QKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445556666666666666677788888888887777777776666555543
No 72
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=53.11 E-value=53 Score=22.68 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 178 LETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 178 l~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
+...+.++..+|...+....||..|++=.-.|.-...+
T Consensus 35 i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIat 72 (84)
T 1gk4_A 35 IGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIAT 72 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33345666677777888888998888777666555443
No 73
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=53.08 E-value=25 Score=28.98 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 181 ADAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 181 ~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
.+..++.+++|.+.+...|-|+..|.++.++..
T Consensus 64 l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~ 96 (213)
T 4ani_A 64 AKAQIAELEAKLSEMEHRYLRLYADFENFRRRT 96 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666777777766666544
No 74
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=52.94 E-value=45 Score=21.80 Aligned_cols=13 Identities=46% Similarity=0.549 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 027820 188 LQKQSADLLLEYD 200 (218)
Q Consensus 188 LKKQae~l~~EYd 200 (218)
|+++++.|..|+.
T Consensus 42 L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 42 LQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 75
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=52.43 E-value=29 Score=22.20 Aligned_cols=7 Identities=29% Similarity=0.482 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 027820 164 LKKLKSE 170 (218)
Q Consensus 164 ~~kLk~e 170 (218)
++.|+.|
T Consensus 21 ~eaLk~E 27 (53)
T 2yy0_A 21 IELLRLE 27 (53)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 76
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=52.43 E-value=26 Score=25.36 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=35.2
Q ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 159 TLSVNLK-KLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 159 ~l~~e~~-kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
.++..++ +|...+....++.. ++..| .|-+.|.++|-.+..+++.++.+-
T Consensus 37 ~LR~~l~~~l~~~~~~L~k~~~----~l~~l-~qkeRL~~dF~~l~~~fQ~~qr~y 87 (97)
T 1hs7_A 37 ELRYKIETELIPNCTSVRDKIE----SNILI-HQNGKLSADFKNLKTKYQSLQQSY 87 (97)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHH----HSTHH-HHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----Hhccc-chhhHHHHHHHHHHHHHHHHHHHH
Confidence 3556666 66666666655544 55555 488999999999999888887654
No 77
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=52.30 E-value=37 Score=23.02 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.+..|....+.+..|...|.++...|+..+.
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555544
No 78
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=51.86 E-value=59 Score=22.79 Aligned_cols=14 Identities=43% Similarity=0.475 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 027820 182 DAHVIALQKQSADL 195 (218)
Q Consensus 182 ~~d~~aLKKQae~l 195 (218)
..+++.++++.+.+
T Consensus 58 ~~e~~~l~~~~eel 71 (81)
T 1wt6_A 58 EAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555544443
No 79
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=51.81 E-value=73 Score=23.87 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 164 LKKLKSECEQKDKQLETADAHVIALQKQS 192 (218)
Q Consensus 164 ~~kLk~el~~~~kel~~~~~d~~aLKKQa 192 (218)
+++|+.||+.++..|..+..+++-|+++.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333333333333333334444444433
No 80
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=51.78 E-value=47 Score=21.68 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
+++.|+++-+.|..+.+.|.++...|+..
T Consensus 31 ~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 31 ETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555544443
No 81
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=51.63 E-value=60 Score=29.55 Aligned_cols=6 Identities=17% Similarity=0.750 Sum_probs=2.3
Q ss_pred HHHHHH
Q 027820 113 TKLIRL 118 (218)
Q Consensus 113 ~~l~~l 118 (218)
.++..+
T Consensus 31 ~~~~~l 36 (455)
T 2dq0_A 31 DEILKL 36 (455)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 82
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=51.49 E-value=1.4e+02 Score=28.01 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027820 194 DLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 194 ~l~~EYdrL~~e~~~l~~~ 212 (218)
|++++-+.|..|.+.|+.+
T Consensus 564 g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 564 GFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555544
No 83
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=51.46 E-value=70 Score=28.39 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhc
Q 027820 108 MHHYLTKLIRLRSN 121 (218)
Q Consensus 108 ~~~li~~l~~l~~~ 121 (218)
...|-++|...+++
T Consensus 399 ~~~~~~~~~~~~~~ 412 (471)
T 3mq9_A 399 THLLQQELTEAQKG 412 (471)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 33344455555444
No 84
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=51.45 E-value=45 Score=21.34 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
.++.|+..|+.|++.-...+.+.+.+...||.=...+
T Consensus 14 ~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 14 ALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 3555666677777666666666666666666544443
No 85
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=51.28 E-value=54 Score=22.81 Aligned_cols=52 Identities=19% Similarity=0.186 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 158 STLSVNLKKLKSECEQKDKQLETA------DAHVIALQKQSADLLLEYDRLLEDNQNL 209 (218)
Q Consensus 158 ~~l~~e~~kLk~el~~~~kel~~~------~~d~~aLKKQae~l~~EYdrL~~e~~~l 209 (218)
+.+..++++|+.++...+.++..- -..+..+-.+.+.+..+.+.+.++-..|
T Consensus 25 e~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666665555554321 1234455555555555555555554444
No 86
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=51.02 E-value=47 Score=23.42 Aligned_cols=18 Identities=39% Similarity=0.494 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLE 179 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~ 179 (218)
+|+++|..+++.++.++.
T Consensus 38 ~EN~~Lh~~ie~~~eEi~ 55 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIA 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555554444333
No 87
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=50.83 E-value=41 Score=23.18 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 182 DAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
..=|..|+.+...+..|-++|..++..|+.++++
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556666666666666666666666666653
No 88
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=50.78 E-value=75 Score=23.68 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 180 TADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 180 ~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
..+.++..+|...+....||..|++=.-.|.-.+.+
T Consensus 88 ~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIat 123 (131)
T 3tnu_A 88 SVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIAT 123 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777888889999888877666655543
No 89
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=50.65 E-value=67 Score=29.66 Aligned_cols=9 Identities=11% Similarity=0.176 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 027820 112 LTKLIRLRS 120 (218)
Q Consensus 112 i~~l~~l~~ 120 (218)
+.++..+-+
T Consensus 32 ~~~~~~ld~ 40 (485)
T 3qne_A 32 VDEIIAEYK 40 (485)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 90
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=50.32 E-value=51 Score=21.61 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027820 184 HVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL 202 (218)
+...|+.+++.|..|...|
T Consensus 38 ~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 38 KNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555554444443
No 91
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=50.15 E-value=76 Score=23.60 Aligned_cols=39 Identities=10% Similarity=0.239 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 176 KQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 176 kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
..++-....++....+...+..+...+-++.+.++.+++
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667777777777888888888888888877765
No 92
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=50.05 E-value=24 Score=24.19 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQ 189 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLK 189 (218)
+..+++.+..|.++..+.+++.+.+...++
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655656666665554
No 93
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=50.03 E-value=74 Score=23.44 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027820 187 ALQKQSADLLLEYDRLLEDNQ 207 (218)
Q Consensus 187 aLKKQae~l~~EYdrL~~e~~ 207 (218)
.|..|+++|..|-+=|..-|+
T Consensus 87 dLE~~iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 87 DLERKVESLQEEIAFLKKLHE 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544343
No 94
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=49.09 E-value=80 Score=23.53 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 027820 192 SADLLLEYDRLLEDNQ 207 (218)
Q Consensus 192 ae~l~~EYdrL~~e~~ 207 (218)
.+.+.+.||.+..|.+
T Consensus 70 ~ae~k~KYD~~lqe~e 85 (115)
T 3vem_A 70 MAEVQAEFRRKFHEVE 85 (115)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555555444
No 95
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=49.01 E-value=81 Score=23.55 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027820 192 SADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 192 ae~l~~EYdrL~~e~~~l~ 210 (218)
+.....-|..|.+.|.+|.
T Consensus 101 Aqa~Eerf~KLKe~yteLr 119 (120)
T 3i00_A 101 AQANEQRYSKLKEKYSELV 119 (120)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445556777777777664
No 96
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=48.97 E-value=64 Score=22.39 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.+...++.+.+.+...|+.|.+....=+.+|+
T Consensus 78 ~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~ 109 (118)
T 3uul_A 78 EEEFEIQEQMTLLNARWEALRVESMERQSRLH 109 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999988877665444443
No 97
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=48.86 E-value=66 Score=22.63 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
.+-+.|.++.+.+..|-..|..+++.|+
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444
No 98
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=48.52 E-value=56 Score=24.06 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 027820 183 AHVIALQKQSADLLLE 198 (218)
Q Consensus 183 ~d~~aLKKQae~l~~E 198 (218)
.++..||.+++++.+|
T Consensus 25 ~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 25 EEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444455555444
No 99
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=48.37 E-value=51 Score=21.02 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027820 177 QLETADAHVIALQKQSADL 195 (218)
Q Consensus 177 el~~~~~d~~aLKKQae~l 195 (218)
.|+.+...+..|+.|.+.+
T Consensus 31 ~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 31 TLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334455666666666554
No 100
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=48.35 E-value=79 Score=29.16 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHhc
Q 027820 105 IDRMHHYLTKLIRLRSN 121 (218)
Q Consensus 105 I~R~~~li~~l~~l~~~ 121 (218)
+.++..+=.+-..++.+
T Consensus 32 ~~~~~~ld~~~r~~~~~ 48 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFD 48 (485)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555444444444
No 101
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.31 E-value=28 Score=31.54 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 170 ECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 170 el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
+++..++++.-.+.+.+-++.|.+.+.+||.++.+|...+|
T Consensus 50 ~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 50 KLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333333445566777888888888888877776665
No 102
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=47.27 E-value=72 Score=26.54 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 161 SVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQ 207 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~ 207 (218)
++++..|...|+....|..+..+.++..+.|+..+..-||+++=|.+
T Consensus 177 K~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (228)
T 3q0x_A 177 KGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEVQ 223 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeee
Confidence 34455566666666666677777888888888888888998876543
No 103
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=46.18 E-value=91 Score=23.34 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 164 LKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQ 207 (218)
Q Consensus 164 ~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~ 207 (218)
..+++.++..+..++.. ..+...-|+|.+++-+.|-.+..+.+
T Consensus 46 ~~~l~~~i~er~~~i~~-~~~~~~yk~~y~~l~k~Y~~~~keLd 88 (119)
T 3etw_A 46 NEQVYNELSQRAQRLQA-EANTRFYKSQYQELASKYEDALKKLE 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHH-HTTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHHHHHHH
Confidence 34555556554433333 22344456666666666655555544
No 104
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=46.11 E-value=30 Score=21.11 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIAL 188 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aL 188 (218)
|+..|+.|+...++.+...+..+.+|
T Consensus 21 elaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555444333333334333
No 105
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=45.51 E-value=1.5e+02 Score=27.28 Aligned_cols=13 Identities=15% Similarity=0.107 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 027820 106 DRMHHYLTKLIRL 118 (218)
Q Consensus 106 ~R~~~li~~l~~l 118 (218)
.++..+=.+-..+
T Consensus 70 ~~~~~ld~~~r~~ 82 (501)
T 1wle_A 70 PGIISTWQELRQL 82 (501)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444433333333
No 106
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=45.49 E-value=59 Score=20.96 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027820 193 ADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 193 e~l~~EYdrL~~e~~~l~ 210 (218)
..|..+...|.+|...|+
T Consensus 39 ~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 39 GQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 107
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=44.93 E-value=83 Score=28.57 Aligned_cols=17 Identities=12% Similarity=0.051 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHhc
Q 027820 105 IDRMHHYLTKLIRLRSN 121 (218)
Q Consensus 105 I~R~~~li~~l~~l~~~ 121 (218)
+.++..+=.+-..+..+
T Consensus 30 ~~~~~~l~~~~r~~~~~ 46 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKE 46 (455)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444443443333
No 108
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=44.93 E-value=57 Score=20.67 Aligned_cols=26 Identities=4% Similarity=0.150 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 190 KQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 190 KQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
.+...+...-....++-.+++.+.++
T Consensus 33 ~~~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 33 EKINEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333344444444444443
No 109
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.74 E-value=86 Score=22.66 Aligned_cols=18 Identities=22% Similarity=0.060 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 027820 197 LEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 197 ~EYdrL~~e~~~l~~~l~ 214 (218)
++...+-..+.+|+.|+.
T Consensus 76 ~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 76 KEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344455556666776664
No 110
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=44.73 E-value=48 Score=21.46 Aligned_cols=30 Identities=20% Similarity=0.125 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
++..+|...+....||..|++=.-.|.-..
T Consensus 15 el~~~r~e~~~q~~eYq~LlniK~~Le~EI 44 (59)
T 1gk6_A 15 KNYHLENEVARLKKLVGDLLNVKMALDIEI 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334444555666667776666555554443
No 111
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=44.42 E-value=75 Score=25.86 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 161 SVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
+.++-.+|..|+ .+++=...||+-.+.|..|+..+.++...++.+++
T Consensus 16 R~~L~~lK~rL~-------~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~ 62 (217)
T 3aon_A 16 RMELTRLKKQLT-------TATRGHKLLKDKQDELMRQFILLIRKNNELRQAIE 62 (217)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554 45566777777777777777777777777776654
No 112
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=44.41 E-value=17 Score=22.06 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027820 92 ASLIGFTLFLGFIIDRM 108 (218)
Q Consensus 92 ~YLtGF~LFL~lvI~R~ 108 (218)
+=+-|-.||.+++|+|+
T Consensus 21 aGiIG~IllI~y~I~rl 37 (40)
T 1afo_A 21 AGVIGTILLISYGIRRL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36789999999999997
No 113
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=44.23 E-value=50 Score=25.56 Aligned_cols=12 Identities=33% Similarity=0.473 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 027820 196 LLEYDRLLEDNQ 207 (218)
Q Consensus 196 ~~EYdrL~~e~~ 207 (218)
.+|-+..++|-+
T Consensus 89 E~EL~~VceEQq 100 (141)
T 3okq_A 89 EAELDKVCEEQQ 100 (141)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344555555544
No 114
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.99 E-value=29 Score=24.59 Aligned_cols=29 Identities=17% Similarity=-0.051 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 027820 190 KQSADLLLEYDRLLEDNQNLQKQAQGYKS 218 (218)
Q Consensus 190 KQae~l~~EYdrL~~e~~~l~~~l~~~~~ 218 (218)
-|..|-+++|-++++|.+.|-.+|+.+++
T Consensus 27 l~~~~~s~~yl~~k~eLq~Li~~LDev~~ 55 (89)
T 2d9d_A 27 LQAQNPSELYLSSKTELQGLIGQLDEVSL 55 (89)
T ss_dssp HHCSCTTTHHHHHHHHHHHHHHHHGGGCS
T ss_pred HHhcCchHHHhhhHHHHHHHHHHHhhccc
Confidence 46777799999999999999999887763
No 115
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=43.78 E-value=72 Score=22.34 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 186 IALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 186 ~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
+.+.+..+.+.+.++.+.++.++++..+.
T Consensus 75 e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 75 ETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444455555554443
No 116
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=43.62 E-value=90 Score=26.69 Aligned_cols=47 Identities=13% Similarity=0.210 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQ-SADLLLEYDRLLEDNQN 208 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQ-ae~l~~EYdrL~~e~~~ 208 (218)
+.+++++.++++.+++++..+.++..+.++ .+.+..-|+.+..+.+.
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~ 273 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVAR 273 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777778777777 77777777777666553
No 117
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=43.51 E-value=32 Score=23.53 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 027820 190 KQSADLLLEYDRLL 203 (218)
Q Consensus 190 KQae~l~~EYdrL~ 203 (218)
.|.+..+.+|-++.
T Consensus 18 ~klk~~~ee~~~~~ 31 (71)
T 1uix_A 18 NKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334444443
No 118
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=43.15 E-value=90 Score=22.40 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027820 183 AHVIALQKQSADLLLEYDRLL 203 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~ 203 (218)
.+++.++++...-..-||...
T Consensus 63 ~ele~l~~~l~~~k~~F~~~~ 83 (93)
T 3sjb_C 63 KEINNLKDEIQSENKAFQAHL 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555445555443
No 119
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=43.03 E-value=61 Score=26.59 Aligned_cols=21 Identities=10% Similarity=0.064 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027820 186 IALQKQSADLLLEYDRLLEDN 206 (218)
Q Consensus 186 ~aLKKQae~l~~EYdrL~~e~ 206 (218)
..|=.++..+..-+++|..+.
T Consensus 142 keLae~~q~la~vi~~l~~~~ 162 (209)
T 2wvr_A 142 AEVAEHVQYMAELIERLNGEP 162 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 334455555666666665543
No 120
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=43.00 E-value=95 Score=27.81 Aligned_cols=13 Identities=8% Similarity=0.092 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 027820 106 DRMHHYLTKLIRL 118 (218)
Q Consensus 106 ~R~~~li~~l~~l 118 (218)
.++..+=.+-..+
T Consensus 28 ~~~~~~~~~~r~~ 40 (421)
T 1ses_A 28 EALLALDREVQEL 40 (421)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 121
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=42.94 E-value=87 Score=22.99 Aligned_cols=8 Identities=13% Similarity=0.414 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 027820 163 NLKKLKSE 170 (218)
Q Consensus 163 e~~kLk~e 170 (218)
++.+|+..
T Consensus 26 ei~eLk~~ 33 (106)
T 4e61_A 26 EIEQYKGT 33 (106)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 122
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=42.73 E-value=45 Score=26.72 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q 027820 160 LSVNLKKLKSECEQKDKQLET-ADAHVIALQKQSADLLLEY-DRLLEDNQNLQKQAQ 214 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~-~~~d~~aLKKQae~l~~EY-drL~~e~~~l~~~l~ 214 (218)
+.+++++|+..|+-...+++. ...+++.++.+..-...+| .++....+.++.++.
T Consensus 104 l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~ 160 (191)
T 1nfn_A 104 LGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA 160 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhH
Confidence 345566666666655555554 3456667777777777776 455555666666654
No 123
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=42.58 E-value=68 Score=20.82 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDK 176 (218)
Q Consensus 160 l~~e~~kLk~el~~~~k 176 (218)
++.++.+|+.+.+...+
T Consensus 15 LkDqV~eL~qe~k~m~k 31 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKK 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555544443
No 124
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=42.09 E-value=64 Score=22.54 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQKQAQGY 216 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~~ 216 (218)
.=+..|+.+...+..+-+.|..+++.|+.+++..
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666777777777666543
No 125
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=41.73 E-value=58 Score=21.40 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
-++.|..|++.|..+-+.|..+.+.|+.++
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555443
No 126
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=41.00 E-value=14 Score=22.02 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
.++++||-..+++.+-|.+.++...++.++
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555566555555555555555443
No 127
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=40.95 E-value=2.3e+02 Score=26.44 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 164 LKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 164 ~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
++..+.+.++...|+..+++++...+.......+-|+.+..+.+....++
T Consensus 316 ~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~ 365 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTL 365 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHH
Confidence 34444445555555555666666666555556677877666655444433
No 128
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=40.55 E-value=44 Score=28.32 Aligned_cols=6 Identities=33% Similarity=0.246 Sum_probs=2.2
Q ss_pred HHHHHH
Q 027820 166 KLKSEC 171 (218)
Q Consensus 166 kLk~el 171 (218)
+|+.++
T Consensus 72 ~L~~~L 77 (251)
T 3m9b_A 72 KLMETL 77 (251)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 129
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=40.29 E-value=98 Score=22.01 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 027820 187 ALQKQSADLLLEYDRL 202 (218)
Q Consensus 187 aLKKQae~l~~EYdrL 202 (218)
.|+.+-..+.+|-|.+
T Consensus 66 ~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 66 QLKQEVSRLARERDAY 81 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 130
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=40.16 E-value=1.1e+02 Score=22.60 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027820 181 ADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQG 215 (218)
Q Consensus 181 ~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~~ 215 (218)
.+.++..+|...+....||..|++=.-.|.-.+.+
T Consensus 87 lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIat 121 (129)
T 3tnu_B 87 LEEALQKAKQDMARLLREYQELMNTKLALDVEIAT 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777888889999888877666655543
No 131
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=39.91 E-value=91 Score=21.56 Aligned_cols=6 Identities=50% Similarity=0.490 Sum_probs=2.1
Q ss_pred HHHHHH
Q 027820 184 HVIALQ 189 (218)
Q Consensus 184 d~~aLK 189 (218)
.+..|.
T Consensus 37 ~i~~le 42 (89)
T 2lw1_A 37 KLEALQ 42 (89)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 132
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=39.86 E-value=1.6e+02 Score=24.48 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQS--ADLLLEYDRL 202 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQa--e~l~~EYdrL 202 (218)
.++..|+.||-..+.+...+++.+..+|.|. |.+.-.++-+
T Consensus 131 ~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al 173 (234)
T 3plt_A 131 TKIPVLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSL 173 (234)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3455666666555555555566665555543 4444455555
No 133
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=39.84 E-value=24 Score=23.38 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 027820 195 LLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 195 l~~EYdrL~~e~~~l~ 210 (218)
.+.|-|+|..+|.++.
T Consensus 34 ~SQeLD~LIn~Y~k~~ 49 (62)
T 2bzb_A 34 FSRDLDKLINKFMNVK 49 (62)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4556677777666544
No 134
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=39.63 E-value=1.6e+02 Score=27.11 Aligned_cols=10 Identities=10% Similarity=0.268 Sum_probs=4.4
Q ss_pred HHHHHHHHhc
Q 027820 112 LTKLIRLRSN 121 (218)
Q Consensus 112 i~~l~~l~~~ 121 (218)
+.++..+-++
T Consensus 36 ~d~~~~ld~~ 45 (484)
T 3lss_A 36 VDAIIEADKK 45 (484)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 135
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.51 E-value=74 Score=22.62 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 166 KLKSECEQKDKQLETADAHVIALQKQSADLLLEYD 200 (218)
Q Consensus 166 kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYd 200 (218)
+.+.+++....++......+..++.+.+.+..+|.
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333333344445555555555555554
No 136
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=39.38 E-value=53 Score=21.83 Aligned_cols=17 Identities=35% Similarity=0.350 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027820 195 LLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 195 l~~EYdrL~~e~~~l~~ 211 (218)
.+.|-|+|.-+|.+...
T Consensus 34 ~SQeLD~LIn~Y~k~~~ 50 (64)
T 2c0s_A 34 FSQELDRLLNLLIELKT 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555666666665543
No 137
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=38.68 E-value=83 Score=22.12 Aligned_cols=13 Identities=54% Similarity=0.608 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKD 175 (218)
Q Consensus 163 e~~kLk~el~~~~ 175 (218)
|+++|..+++.++
T Consensus 47 EN~~Lh~~ie~l~ 59 (83)
T 1uii_A 47 ENEKLHKEIEQKD 59 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 138
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=38.45 E-value=77 Score=22.56 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
+..++..|..+++....+......+++++|...+.|
T Consensus 53 LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 53 LENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555445555555666666554443
No 139
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=37.45 E-value=1e+02 Score=21.44 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLE 204 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~ 204 (218)
..++.|+.|+..+...++...-+++.++++-..+-.+-|+...
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~ 69 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSS 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444566777777766666555554443
No 140
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=37.26 E-value=1.2e+02 Score=22.08 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHV-------IALQKQSADLLLEYDRLL 203 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~-------~aLKKQae~l~~EYdrL~ 203 (218)
..++.++.+|+.+..++...+.++ ..+.++..++.+|.|.|.
T Consensus 54 ~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 54 EVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666544444433333 334455555566655554
No 141
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=36.74 E-value=17 Score=20.86 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=11.8
Q ss_pred HHhhHHHHHHhhhc
Q 027820 57 LLSSLMSIVKIQNK 70 (218)
Q Consensus 57 F~Dsv~~~~k~~~~ 70 (218)
|.|+++|++.+...
T Consensus 10 FadA~~RaRQIaAK 23 (31)
T 2kxh_B 10 FKDALQRARQIAAK 23 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999988543
No 142
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=36.68 E-value=1.1e+02 Score=21.36 Aligned_cols=60 Identities=17% Similarity=0.212 Sum_probs=33.2
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 155 EEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 155 ~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.++......++.++...+.--..-..++.|+-+|||-.....-.=-.|-.+.+.|++.+.
T Consensus 21 ~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 21 VERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555544443322223346888999999887765544445555555555544
No 143
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.12 E-value=59 Score=23.64 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSAD 194 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~ 194 (218)
++.+|+.+++.++.|-.+....++.|.-+.++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333444444444443
No 144
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=35.67 E-value=1e+02 Score=21.49 Aligned_cols=23 Identities=4% Similarity=0.161 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027820 182 DAHVIALQKQSADLLLEYDRLLE 204 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~ 204 (218)
+..++.|.+|.+.+.++.+.+..
T Consensus 78 ~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 78 QLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555533
No 145
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=35.64 E-value=1.1e+02 Score=21.10 Aligned_cols=31 Identities=16% Similarity=0.054 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 183 AHVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
.+...++.+.+.+...|+.|.+....=+..|
T Consensus 78 ~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L 108 (119)
T 3uun_A 78 DEETEVQEQMNLLNSRWECLRVASMEKQSNL 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888999999998877765544444
No 146
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=33.92 E-value=2.8e+02 Score=25.39 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027820 184 HVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL 202 (218)
++..|+.+.+++...-.+|
T Consensus 169 ~i~~L~~~~~~l~~ki~~l 187 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKL 187 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 147
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=32.96 E-value=1.8e+02 Score=22.98 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLL 203 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~ 203 (218)
.+.-|..+++.....+.++..+...|....-.+.+|+..+.
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444433444444455555555555555554443
No 148
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=32.85 E-value=1.4e+02 Score=21.66 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 189 QKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 189 KKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
-.++..|..|-+||..|++.|..+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888888888888877644
No 149
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=32.70 E-value=1.5e+02 Score=25.87 Aligned_cols=8 Identities=50% Similarity=0.542 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 027820 184 HVIALQKQ 191 (218)
Q Consensus 184 d~~aLKKQ 191 (218)
.++.|+.|
T Consensus 41 ~i~~l~~~ 48 (323)
T 1lwu_C 41 FVTRLQQQ 48 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 150
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=32.59 E-value=45 Score=21.47 Aligned_cols=15 Identities=20% Similarity=0.521 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHh
Q 027820 199 YDRLLEDNQNLQKQA 213 (218)
Q Consensus 199 YdrL~~e~~~l~~~l 213 (218)
|.+|.+|+..|+.++
T Consensus 36 ~~~l~~e~~~L~~~~ 50 (57)
T 2wuj_A 36 YEIVLRKKTELEAKV 50 (57)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 151
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=32.42 E-value=1.3e+02 Score=25.76 Aligned_cols=12 Identities=25% Similarity=0.185 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHH
Q 027820 199 YDRLLEDNQNLQ 210 (218)
Q Consensus 199 YdrL~~e~~~l~ 210 (218)
|+.+++||++++
T Consensus 142 Y~~r~ee~ekak 153 (279)
T 3qwe_A 142 YVQRSEDLRARS 153 (279)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 666777766553
No 152
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=32.42 E-value=1.3e+02 Score=21.19 Aligned_cols=50 Identities=12% Similarity=0.262 Sum_probs=34.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 156 EISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLED 205 (218)
Q Consensus 156 e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e 205 (218)
+++.+-.++--|.-+|-..=..-..++.++..|..+.-+--+-||+|++.
T Consensus 36 eiq~LY~~v~~lRPkL~~li~kysqKk~eL~~Ln~kl~~a~~~Yd~lle~ 85 (88)
T 2pjw_H 36 HIGDMYGSVTPLRPQVTRMLGKYAKEKEDMLSLRQVLANAERSYNQLMDR 85 (88)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444444456678999999999999999999874
No 153
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=32.38 E-value=55 Score=17.67 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQL 178 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel 178 (218)
+-+|++.|+..+.+..+.+
T Consensus 6 lykeledlqerlrklrkkl 24 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456666666666554433
No 154
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=32.06 E-value=1.3e+02 Score=20.86 Aligned_cols=18 Identities=22% Similarity=0.301 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027820 187 ALQKQSADLLLEYDRLLE 204 (218)
Q Consensus 187 aLKKQae~l~~EYdrL~~ 204 (218)
..|-..+-=-..|.+|++
T Consensus 63 nvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 63 DIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHc
Confidence 345444444456766655
No 155
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=31.99 E-value=1.2e+02 Score=20.71 Aligned_cols=34 Identities=21% Similarity=0.114 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 181 ADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 181 ~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.+..++.|-...-..+++-|+|......+.+++.
T Consensus 26 qE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 26 QEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555544
No 156
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=31.74 E-value=1.4e+02 Score=21.34 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 190 KQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 190 KQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.|.......-|.|..+..+++..|.
T Consensus 62 ~~L~e~~~kid~L~~el~K~q~~L~ 86 (98)
T 2ke4_A 62 PQIAETLSNIERLKLEVQKYEAWLA 86 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555667666666666554
No 157
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=31.59 E-value=1.3e+02 Score=24.73 Aligned_cols=36 Identities=28% Similarity=0.203 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 176 KQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 176 kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
++|..+=.+-+.|.++.+.+..|-.+|.+|+..|+.
T Consensus 108 ~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 108 KALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555443
No 158
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=31.31 E-value=1.4e+02 Score=21.02 Aligned_cols=17 Identities=35% Similarity=0.307 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027820 186 IALQKQSADLLLEYDRL 202 (218)
Q Consensus 186 ~aLKKQae~l~~EYdrL 202 (218)
..|+.|.+.|.+|.+.|
T Consensus 53 ~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 53 ERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 159
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=30.72 E-value=1.1e+02 Score=26.62 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 177 QLETADAHVIALQKQSADLLLEYD 200 (218)
Q Consensus 177 el~~~~~d~~aLKKQae~l~~EYd 200 (218)
.+.....+++.|++|.+.++++|+
T Consensus 170 ~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 170 ILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHhcccccHHHHHHHHHHHHHHHH
Confidence 333344567777777777777765
No 160
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.50 E-value=96 Score=18.99 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 027820 184 HVIALQKQSAD 194 (218)
Q Consensus 184 d~~aLKKQae~ 194 (218)
.+.-++++.+.
T Consensus 24 kI~~lqkKlke 34 (42)
T 2l5g_B 24 QISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 161
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=30.33 E-value=88 Score=24.52 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 027820 164 LKKLKSECEQKDKQLET-ADAHVIALQKQSA 193 (218)
Q Consensus 164 ~~kLk~el~~~~kel~~-~~~d~~aLKKQae 193 (218)
++.++..++=...+++. ...++++|+.|..
T Consensus 113 ~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~ 143 (185)
T 3r2p_A 113 MELYRQKVEPLRAELQEGARQKLHELQEKLS 143 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33444444333333322 3344444444433
No 162
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=30.20 E-value=1e+02 Score=23.19 Aligned_cols=34 Identities=9% Similarity=0.071 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
+.+.+|+.|++..++++..+-++.+.+-++.+++
T Consensus 92 ~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777667777666766665
No 163
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=30.17 E-value=1.9e+02 Score=22.29 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 188 LQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 188 LKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
-|-|..+|.+.|-.++.+++++|.
T Consensus 82 ~k~~~~~L~~~f~~~~~~fq~~Q~ 105 (196)
T 1fio_A 82 KQAQAENSRQRFLKLIQDYRIVDS 105 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666655543
No 164
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=29.83 E-value=1.2e+02 Score=19.97 Aligned_cols=34 Identities=32% Similarity=0.363 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 177 QLETADAHVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 177 el~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
++..+++.+.-|=|=-.+++.|..++..+.+++|
T Consensus 21 ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQ 54 (63)
T 2w6a_A 21 ALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 3334444554444444445554444444444444
No 165
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=29.60 E-value=1e+02 Score=23.85 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADL 195 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l 195 (218)
+.+.+|+.|+++.++++..+-++.+.+-++++++
T Consensus 92 ~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~ 125 (151)
T 1yke_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSL 125 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777666
No 166
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=29.39 E-value=1.6e+02 Score=21.31 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 171 CEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNL 209 (218)
Q Consensus 171 l~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l 209 (218)
++....+|.....++..++.-.++.+.+=..+......+
T Consensus 56 le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l 94 (107)
T 2no2_A 56 LESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAEL 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666665555555544444444433
No 167
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=29.20 E-value=89 Score=28.01 Aligned_cols=17 Identities=24% Similarity=0.435 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027820 161 SVNLKKLKSECEQKDKQ 177 (218)
Q Consensus 161 ~~e~~kLk~el~~~~ke 177 (218)
..+..+++.+++..+++
T Consensus 74 ~~~~~~~~~~~~~~~~~ 90 (425)
T 2dq3_A 74 QNRVKELKEEIDRLEEE 90 (425)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 168
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.18 E-value=1.6e+02 Score=26.20 Aligned_cols=8 Identities=13% Similarity=0.110 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 027820 164 LKKLKSEC 171 (218)
Q Consensus 164 ~~kLk~el 171 (218)
+++++.++
T Consensus 26 ~~~~~~~~ 33 (403)
T 4etp_A 26 IKDTELGM 33 (403)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 169
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=29.11 E-value=1.2e+02 Score=19.68 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027820 182 DAHVIALQKQSADLLLEYD 200 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYd 200 (218)
=-+++-|++...|+++||-
T Consensus 40 ~LEIQKL~~EL~glskefl 58 (65)
T 2yf2_A 40 FLEIQKLKVELQGLSKEFL 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcchhHHHH
Confidence 3455566677777777773
No 170
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=29.08 E-value=1.5e+02 Score=20.64 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027820 181 ADAHVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 181 ~~~d~~aLKKQae~l~~EYdrL 202 (218)
.+.....|..+...+..+++.|
T Consensus 33 ~e~~rkele~~~~~l~~ek~~L 54 (89)
T 3bas_A 33 TERIKKELEEQNVTLLEQKNDL 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 171
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=28.89 E-value=34 Score=28.67 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhc
Q 027820 199 YDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 199 YdrL~~e~~~l~~~l~ 214 (218)
++.+..|+++|+..|.
T Consensus 45 ~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 45 VADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3344555555555443
No 172
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=28.73 E-value=96 Score=24.20 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q 027820 160 LSVNLKKLKSECEQKDKQLET-ADAHVIALQKQSADLLLEY-DRLLEDNQNLQKQAQ 214 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~-~~~d~~aLKKQae~l~~EY-drL~~e~~~l~~~l~ 214 (218)
+..++++++..++..-.+++. .....+.+|.+.+-...+| .++..+.+.|+.+|.
T Consensus 104 L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL~ 160 (165)
T 1gs9_A 104 LGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA 160 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 334455555555544444443 2345556666666666665 456666667777765
No 173
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.63 E-value=1.5e+02 Score=20.81 Aligned_cols=31 Identities=6% Similarity=0.154 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.++....+.+.+..++..|.++...+...++
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~ 95 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELR 95 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888888777766554
No 174
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=28.46 E-value=75 Score=20.04 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027820 183 AHVIALQKQSADLLLEYDRLL 203 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EYdrL~ 203 (218)
.++.+|..=.+.|..||+++.
T Consensus 27 dEV~~L~~NL~EL~~E~~~~~ 47 (48)
T 3v1a_A 27 DEVRTLQENLHQLMHEYFQQS 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 466677777777777887753
No 175
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=28.44 E-value=59 Score=28.04 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 027820 161 SVNLKKLKSECEQK 174 (218)
Q Consensus 161 ~~e~~kLk~el~~~ 174 (218)
.++++.|+.|++++
T Consensus 191 ~~~~~~L~eEi~~L 204 (315)
T 2ve7_A 191 EAKNRALNEQIARL 204 (315)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 176
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=28.36 E-value=1.7e+02 Score=21.22 Aligned_cols=10 Identities=10% Similarity=0.424 Sum_probs=4.1
Q ss_pred HHHHHHHHhc
Q 027820 112 LTKLIRLRSN 121 (218)
Q Consensus 112 i~~l~~l~~~ 121 (218)
|.+-..++..
T Consensus 36 IqEYl~LE~~ 45 (104)
T 3s9g_A 36 IKEYLELEKS 45 (104)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333444444
No 177
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=28.08 E-value=1.2e+02 Score=19.26 Aligned_cols=26 Identities=19% Similarity=0.127 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 161 SVNLKKLKSECEQKDKQLETADAHVI 186 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~~~~d~~ 186 (218)
.+.+++|-.-|+....++.+...+++
T Consensus 22 ~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 22 AARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 178
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=27.59 E-value=1.5e+02 Score=20.30 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 027820 189 QKQSADLLLEYDRLL 203 (218)
Q Consensus 189 KKQae~l~~EYdrL~ 203 (218)
|-..+-=-..|.+|+
T Consensus 63 K~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 63 KMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 333333334455554
No 179
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=27.26 E-value=1.2e+02 Score=18.92 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027820 181 ADAHVIALQKQSADLLLEYD 200 (218)
Q Consensus 181 ~~~d~~aLKKQae~l~~EYd 200 (218)
.+..++.|+.-...+..||.
T Consensus 10 Le~~ld~LqTr~ArLlae~~ 29 (46)
T 3swy_A 10 LGSSLDTLQTRFARLLAEYN 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444443
No 180
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=26.85 E-value=1.6e+02 Score=20.41 Aligned_cols=15 Identities=47% Similarity=0.492 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDK 176 (218)
Q Consensus 162 ~e~~kLk~el~~~~k 176 (218)
+|+++|-.+++.++.
T Consensus 34 ~EN~~Lh~~ie~~~e 48 (79)
T 2zxx_A 34 KENEKLHKEIEQKDS 48 (79)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555443
No 181
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=26.83 E-value=1.3e+02 Score=20.70 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027820 182 DAHVIALQKQSADLLLEY 199 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EY 199 (218)
+..++.|+.....|..||
T Consensus 13 E~sld~LQTrfARLLaEy 30 (74)
T 3swf_A 13 ESSVDLLQTRFARILAEY 30 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344545555444444444
No 182
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.74 E-value=3.5e+02 Score=24.23 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHhccc
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSADL-LLEYDRL--LEDNQNLQKQAQGY 216 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l-~~EYdrL--~~e~~~l~~~l~~~ 216 (218)
.+.-|+.-|+....++++.|.||+.=+.-+.+- ..++|+- .+.|++.|+||++.
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~qv 191 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQV 191 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHHhh
Confidence 344555555555556666666665544444432 2222222 36778888888754
No 183
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=26.71 E-value=2.2e+02 Score=25.55 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 027820 198 EYDRLLEDNQNL 209 (218)
Q Consensus 198 EYdrL~~e~~~l 209 (218)
|++.|.+++..+
T Consensus 228 E~e~L~~~~~~L 239 (517)
T 4ad8_A 228 EEEGLNTELSRL 239 (517)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 444444444444
No 184
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=26.53 E-value=65 Score=28.92 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027820 185 VIALQKQSADLLLEYDRLLEDN 206 (218)
Q Consensus 185 ~~aLKKQae~l~~EYdrL~~e~ 206 (218)
...++.+.+.+..+...+.++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~ 98 (425)
T 2dq3_A 77 VKELKEEIDRLEEELRKVEEEL 98 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 185
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Probab=26.27 E-value=26 Score=26.99 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL 202 (218)
++.++++|+..+++.+. --.-..||+.|++...+-||+-
T Consensus 18 lk~sVKKLE~RLkKYep----gSpPALALqqqIeKTK~RFdkY 56 (154)
T 1qzv_F 18 EKQALKKLQASLKLYAD----DSAPALAIKATMEXXXXXXXXX 56 (154)
T ss_pred HHHHHHHHHHHHHcCCC----CChHHHHHHHHHHHHhcccccc
Confidence 44556666666654321 1235678999999999988864
No 186
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=25.75 E-value=70 Score=23.01 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 027820 199 YDRLLEDNQNLQKQ 212 (218)
Q Consensus 199 YdrL~~e~~~l~~~ 212 (218)
+|.|.+|++++.++
T Consensus 65 ~DKl~~ele~l~~~ 78 (94)
T 3vlc_E 65 LDSLDKEINNLKDE 78 (94)
T ss_dssp HHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 187
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=25.72 E-value=92 Score=26.86 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q 027820 160 LSVNLKKLKSECEQKDKQLETA-DAHVIALQKQSADLLLEY-DRLLEDNQNLQKQAQ 214 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~-~~d~~aLKKQae~l~~EY-drL~~e~~~l~~~l~ 214 (218)
+..++++++.+++-...++... ..+++.++.+..-...|| +++...-+.++.+|.
T Consensus 112 L~~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~ 168 (307)
T 2l7b_A 112 LGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA 168 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 3455666666666555555442 447777777777777777 556566666777665
No 188
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=25.35 E-value=1.5e+02 Score=25.06 Aligned_cols=11 Identities=18% Similarity=0.151 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 027820 183 AHVIALQKQSA 193 (218)
Q Consensus 183 ~d~~aLKKQae 193 (218)
.++++++.|.+
T Consensus 129 a~~~~~~~~l~ 139 (369)
T 4dk0_A 129 AEMDVVQENIK 139 (369)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 189
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=25.09 E-value=1.8e+02 Score=20.43 Aligned_cols=29 Identities=14% Similarity=0.003 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 027820 189 QKQSADLLLEYDRLLEDNQNLQKQAQGYK 217 (218)
Q Consensus 189 KKQae~l~~EYdrL~~e~~~l~~~l~~~~ 217 (218)
|+|.+....|..-.....+.|+.+++..+
T Consensus 55 kk~~~~V~~eL~~sn~kl~~L~~eL~eL~ 83 (86)
T 1cxz_B 55 GRSLGPVELLLRGSSRRLDLLHQQLQELH 83 (86)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77888888888777777778887776543
No 190
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=24.90 E-value=2.9e+02 Score=22.77 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNL 209 (218)
Q Consensus 160 l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l 209 (218)
+.....++|+++..++..+.+.+.+..++.+|.+.-...--.+.+-|.+.
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34557788888888888888888888888888888777776776666654
No 191
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=24.90 E-value=2.7e+02 Score=22.34 Aligned_cols=11 Identities=9% Similarity=0.072 Sum_probs=5.0
Q ss_pred CCCChHHHHHH
Q 027820 75 GTMSPMDQVLW 85 (218)
Q Consensus 75 ~~~~~~~~~~~ 85 (218)
+..+|.++..|
T Consensus 4 ~f~s~~ee~~y 14 (189)
T 2v71_A 4 DFSSLKEETAY 14 (189)
T ss_dssp CCSSHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 34455554433
No 192
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=24.87 E-value=90 Score=16.82 Aligned_cols=9 Identities=33% Similarity=0.501 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 027820 164 LKKLKSECE 172 (218)
Q Consensus 164 ~~kLk~el~ 172 (218)
+.+||.|+.
T Consensus 9 vgelkgevr 17 (27)
T 3v86_A 9 VGELKGEVR 17 (27)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhHHH
Confidence 333444433
No 193
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=24.35 E-value=3.1e+02 Score=22.92 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLET-ADAHVIALQKQSADLLLEY 199 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~-~~~d~~aLKKQae~l~~EY 199 (218)
+++++++.+++-...++.. ...+++.++.+..-...++
T Consensus 44 ~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el 82 (273)
T 3s84_A 44 DNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRM 82 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444444444444444433 3445555555555544444
No 194
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=24.21 E-value=2.6e+02 Score=22.02 Aligned_cols=52 Identities=23% Similarity=0.327 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 147 SKELKRLQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLE 198 (218)
Q Consensus 147 ~~~~~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~E 198 (218)
++...+..+-+..+..|++.++..+.....+-+.....+..|.|...++.-+
T Consensus 89 se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid 140 (168)
T 3o0z_A 89 SEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEID 140 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3444556666778888888888877777777777777777887777776644
No 195
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=23.93 E-value=1.6e+02 Score=19.44 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRL 202 (218)
Q Consensus 163 e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL 202 (218)
+.++|+.....-..++...+.++.-|+.+..+|+.|-+.+
T Consensus 36 k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 36 KFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666665555566666667777777777776666554
No 196
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=23.91 E-value=1.8e+02 Score=21.00 Aligned_cols=33 Identities=18% Similarity=0.074 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 164 LKKLKSECEQKDKQLETADAHVIALQKQSADLL 196 (218)
Q Consensus 164 ~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~ 196 (218)
+..|+.|++.++.+-+..+.-+..++.+..++.
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555554444433334445555555555554
No 197
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.86 E-value=4.2e+02 Score=24.22 Aligned_cols=17 Identities=18% Similarity=0.022 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhc
Q 027820 105 IDRMHHYLTKLIRLRSN 121 (218)
Q Consensus 105 I~R~~~li~~l~~l~~~ 121 (218)
+.++..+=.+-..++.+
T Consensus 36 ~d~~~~ld~~~r~~~~~ 52 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFL 52 (484)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555554444444444
No 198
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=23.79 E-value=88 Score=22.99 Aligned_cols=17 Identities=24% Similarity=0.155 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027820 183 AHVIALQKQSADLLLEY 199 (218)
Q Consensus 183 ~d~~aLKKQae~l~~EY 199 (218)
.++++|+.+.+.++.|-
T Consensus 96 ~~~~~L~~~i~~Le~el 112 (117)
T 3kin_B 96 EKNKALKSVIQHLEVEL 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554443
No 199
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=23.60 E-value=1.4e+02 Score=18.64 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 027820 185 VIALQKQSADL 195 (218)
Q Consensus 185 ~~aLKKQae~l 195 (218)
+..|.|-..|+
T Consensus 40 ianlekdianl 50 (56)
T 3he4_A 40 IANLEKDIANL 50 (56)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 200
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.58 E-value=1.2e+02 Score=27.14 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027820 177 QLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQAQ 214 (218)
Q Consensus 177 el~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~l~ 214 (218)
.+++.+.+++-|+-|-+.+..+...+..|...+++++.
T Consensus 50 ~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~ 87 (428)
T 4b4t_K 50 KLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVK 87 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555455544444443
No 201
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=23.51 E-value=1.1e+02 Score=24.57 Aligned_cols=30 Identities=10% Similarity=0.271 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQKD----KQLETADAHVIALQKQS 192 (218)
Q Consensus 163 e~~kLk~el~~~~----kel~~~~~d~~aLKKQa 192 (218)
++++|+.++++.. ..+.+..+|.+.+||.+
T Consensus 43 ~~~~l~~~l~e~~~~~~d~~lR~~Ae~eN~rkR~ 76 (197)
T 1dkg_A 43 KVANLEAQLAEAQTRERDGILRVKAEMENLRRRT 76 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4445555554433 23444445555555433
No 202
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=23.33 E-value=1.3e+02 Score=20.51 Aligned_cols=11 Identities=18% Similarity=0.120 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 027820 183 AHVIALQKQSA 193 (218)
Q Consensus 183 ~d~~aLKKQae 193 (218)
.+.+.|++|.+
T Consensus 68 ~e~~~L~~~L~ 78 (80)
T 1nlw_A 68 REQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 203
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.95 E-value=2.3e+02 Score=20.87 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNL 209 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l 209 (218)
.+..|..+...+..+-.+.+.||+.|
T Consensus 85 ~i~~lE~eL~~~r~em~~ql~EYq~L 110 (131)
T 3tnu_A 85 MIGSVEEQLAQLRCEMEQQNQEYKIL 110 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555555554
No 204
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.94 E-value=1.5e+02 Score=20.60 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECE 172 (218)
Q Consensus 159 ~l~~e~~kLk~el~ 172 (218)
.+-++++.++.++.
T Consensus 38 ~Lh~~ie~~~eEi~ 51 (79)
T 2zxx_A 38 KLHKEIEQKDSEIA 51 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 205
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=22.85 E-value=1.4e+02 Score=23.87 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027820 184 HVIALQKQSADLLLEYDRLLEDNQNLQKQA 213 (218)
Q Consensus 184 d~~aLKKQae~l~~EYdrL~~e~~~l~~~l 213 (218)
.+..|++..+.|+.+..+..++|..+++.+
T Consensus 136 tV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 136 TTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444333
No 206
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=22.84 E-value=1.2e+02 Score=19.08 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETA 181 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~ 181 (218)
++.++|+.++.+.++.+++.
T Consensus 14 kk~eeler~lrk~kk~iKkl 33 (50)
T 1a92_A 14 KKLEELERDLRKLKKKIKKL 33 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34455555555444444433
No 207
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=22.82 E-value=1.5e+02 Score=22.87 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 165 KKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLED 205 (218)
Q Consensus 165 ~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e 205 (218)
..++..++..+...+..+.++..++...+.+..+...|.++
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEe 109 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEE 109 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444555444444455556666666555555555555433
No 208
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=22.74 E-value=2.3e+02 Score=20.83 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhc
Q 027820 185 VIALQKQSADLLLEYD-------RLLEDNQNLQKQAQ 214 (218)
Q Consensus 185 ~~aLKKQae~l~~EYd-------rL~~e~~~l~~~l~ 214 (218)
+.-|+-|++=....|. |+..|.+.|+.++.
T Consensus 64 I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~ 100 (110)
T 2v4h_A 64 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE 100 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHH
Confidence 4445555554444442 34444445544443
No 209
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=22.65 E-value=60 Score=26.79 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHH
Q 027820 93 SLIGFTLFLGFI-IDRMHHYLTK 114 (218)
Q Consensus 93 YLtGF~LFL~lv-I~R~~~li~~ 114 (218)
|+.+|+++..++ ++=..++|.+
T Consensus 215 ~f~~~~~i~~~~~lnl~~aii~~ 237 (285)
T 3rvy_A 215 FFIPFIFVVTFVMINLVVAICVD 237 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555433 3334444443
No 210
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=22.45 E-value=14 Score=26.78 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQN 208 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~ 208 (218)
.++++|+.++...+. ....+..|+-|++=....|..--...++
T Consensus 38 ~~ideLKe~i~q~~~----~~E~i~vL~aQ~~iY~~DF~aERaaREk 80 (96)
T 3fx0_A 38 EVIDKLKEEAEQHKI----VMETVPVLKAQADIYKADFQAERQAREK 80 (96)
T ss_dssp THHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777665433 2356778888888777777544333333
No 211
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=22.41 E-value=1.3e+02 Score=25.19 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHhHhhhHhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 113 TKLIRLRSNAGSSKEEVEQLQKEKMQLKDKEEKASKELKRLQEEISTLSVNLKKLKSECEQKDKQLETADAHVIALQKQS 192 (218)
Q Consensus 113 ~~l~~l~~~~~a~~~~~kq~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQa 192 (218)
.++...+++...+.+++.+++.+.+.++. .-+....+.+....-..+.++.+.++...+.++..++.+++..+.+.
T Consensus 69 ~~~~~~~a~l~~~~a~l~~a~~~~~~a~~----~~~r~~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l 144 (341)
T 3fpp_A 69 NQIKEVEATLMELRAQRQQAEAELKLARV----TYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASL 144 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 027820 193 ADLLLEYDR 201 (218)
Q Consensus 193 e~l~~EYdr 201 (218)
+......++
T Consensus 145 ~~a~~~l~~ 153 (341)
T 3fpp_A 145 DTAKTNLDY 153 (341)
T ss_dssp TTTTTTTTS
T ss_pred HHHHHhhhC
No 212
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=22.36 E-value=1.7e+02 Score=26.83 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027820 93 SLIGFTLFLGFIIDRMHHYLTK 114 (218)
Q Consensus 93 YLtGF~LFL~lvI~R~~~li~~ 114 (218)
.+-|+...+ ..|+.+..+|+.
T Consensus 360 ilegl~~a~-~~iD~vI~iIr~ 380 (470)
T 3ilw_A 360 ILRGLVKAL-DALDEVIALIRA 380 (470)
T ss_dssp HHHHHHHHH-HTHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHh
Confidence 678877665 567887777764
No 213
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=22.19 E-value=4e+02 Score=24.04 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 161 SVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYD 200 (218)
Q Consensus 161 ~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYd 200 (218)
..+++.||.++...++.+++.+.-+-.|-.|+..+.+.|-
T Consensus 522 qakldqlknqvdgyeksikkqesaiyelhnqidalrkayy 561 (761)
T 4fye_A 522 QAKLDQLKNQVDGYEKSIKKQESAIYELHNQIDALRKAYY 561 (761)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999988888888888888888888888888873
No 214
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=22.17 E-value=1.8e+02 Score=19.94 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 172 EQKDKQLETADAHVIALQKQSADLL 196 (218)
Q Consensus 172 ~~~~kel~~~~~d~~aLKKQae~l~ 196 (218)
+...+++...+..++.+...++.+.
T Consensus 46 ~~l~~ei~~~~~~v~~v~~~g~~L~ 70 (118)
T 3uul_A 46 ETFMMELSAHQSSVGSVLQAGNQLM 70 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555553
No 215
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.13 E-value=1.2e+02 Score=20.55 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 027820 184 HVIALQKQ 191 (218)
Q Consensus 184 d~~aLKKQ 191 (218)
+...|+.|
T Consensus 69 ~~~~L~~~ 76 (83)
T 1nkp_B 69 QNALLEQQ 76 (83)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33344433
No 216
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.94 E-value=2.4e+02 Score=20.69 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 027820 163 NLKKLKSECEQK 174 (218)
Q Consensus 163 e~~kLk~el~~~ 174 (218)
|+++|+.++.++
T Consensus 19 e~~~l~~~~~el 30 (125)
T 1joc_A 19 EIEKLQTKVLEL 30 (125)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 344444444333
No 217
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=21.79 E-value=1.2e+02 Score=17.14 Aligned_cols=8 Identities=50% Similarity=0.559 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 027820 195 LLLEYDRL 202 (218)
Q Consensus 195 l~~EYdrL 202 (218)
+++-.|||
T Consensus 18 lq~r~drl 25 (32)
T 2akf_A 18 LQERLDRL 25 (32)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33334444
No 218
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=21.67 E-value=2.7e+02 Score=21.26 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 187 ALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 187 aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
.-+.|..+|.+.|-.++.+|+.++..
T Consensus 123 ir~~q~~~L~~kf~~~m~~yq~~q~~ 148 (180)
T 1s94_A 123 IRKTQYSTISRKFVEVMSDYNTTQID 148 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999888754
No 219
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=21.60 E-value=2.2e+02 Score=21.06 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027820 186 IALQKQSADLLLEYDRLLEDN 206 (218)
Q Consensus 186 ~aLKKQae~l~~EYdrL~~e~ 206 (218)
.-|.|++.+...++.+.++..
T Consensus 52 ~kldKrik~~~E~~MK~LE~l 72 (114)
T 1hx1_B 52 CKLDRRVKATIEQFMKILEEI 72 (114)
T ss_dssp HTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345678888877777776654
No 220
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=21.58 E-value=3e+02 Score=23.00 Aligned_cols=18 Identities=11% Similarity=0.073 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027820 182 DAHVIALQKQSADLLLEY 199 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EY 199 (218)
..+++.+|.+.+-...|+
T Consensus 43 ~~~le~lr~~L~Py~~el 60 (273)
T 3s84_A 43 GDNLRELQQRLEPYADQL 60 (273)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556666555555555
No 221
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=21.34 E-value=1.5e+02 Score=21.22 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVI 186 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~ 186 (218)
+++-+.++|..|+++.++++......++
T Consensus 53 KL~Rk~DKl~~ele~l~~~l~~~k~~F~ 80 (93)
T 3sjb_C 53 KNNRKLDSLDKEINNLKDEIQSENKAFQ 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777776666655555444
No 222
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=21.26 E-value=1.9e+02 Score=26.96 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027820 93 SLIGFTLFLGFIIDRMHHYLT 113 (218)
Q Consensus 93 YLtGF~LFL~lvI~R~~~li~ 113 (218)
.+.||..++. .|+.+..+|+
T Consensus 398 ilegl~~a~~-~id~vI~iIr 417 (514)
T 2inr_A 398 IVEGLIKALS-ILDKVIELIR 417 (514)
T ss_dssp HHHHHHHHHH-SHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHH
Confidence 7889887764 6788887764
No 223
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.08 E-value=2.4e+02 Score=20.43 Aligned_cols=30 Identities=7% Similarity=0.053 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 182 DAHVIALQKQSADLLLEYDRLLEDNQNLQK 211 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~e~~~l~~ 211 (218)
+..++.+.++.+.+...++.+.+..+++..
T Consensus 101 ~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 101 ESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555555555555555555544
No 224
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.01 E-value=2.4e+02 Score=20.42 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027820 178 LETADAHVIALQKQSADLL 196 (218)
Q Consensus 178 l~~~~~d~~aLKKQae~l~ 196 (218)
+++.+.+++-++.|...+.
T Consensus 104 ~~~l~~~l~~l~~~i~~~~ 122 (133)
T 1fxk_C 104 LQKMGENLRAITDIMMKLS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444333
No 225
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.00 E-value=3.9e+02 Score=23.85 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027820 190 KQSADLLLEYDRLLEDNQ 207 (218)
Q Consensus 190 KQae~l~~EYdrL~~e~~ 207 (218)
+|++++.+-|+.++++.+
T Consensus 102 ~q~~dndn~~~e~s~eLe 119 (390)
T 1deq_A 102 AKANNNDNTFKQINEDLR 119 (390)
T ss_pred HhhccchHHHHHHHHHHH
Confidence 455555555555555433
No 226
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.00 E-value=2.5e+02 Score=20.57 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 185 VIALQKQSADLLLEYDRLLEDNQNL 209 (218)
Q Consensus 185 ~~aLKKQae~l~~EYdrL~~e~~~l 209 (218)
+..|..+...+..+-.+.+.||+.|
T Consensus 84 i~~lE~eL~~~r~e~~~ql~EYq~L 108 (129)
T 3tnu_B 84 LAELEEALQKAKQDMARLLREYQEL 108 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555544
No 227
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=20.86 E-value=2.1e+02 Score=19.52 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQ 210 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~ 210 (218)
.|+..|+..+.-+.+ |.+-|--..=+++-|-+=|.+..++++
T Consensus 32 ~eI~~L~e~i~lk~k-------d~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 32 QEIRRLKEVIALKNK-------NTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcc-------cHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 344455554444433 444444444444555555555555444
No 228
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=20.75 E-value=1.8e+02 Score=28.19 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 159 TLSVNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEY 199 (218)
Q Consensus 159 ~l~~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EY 199 (218)
++.+|.++|+++++..++=|.+.+.-...++++...+.+.|
T Consensus 406 kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~ky 446 (716)
T 1zvu_A 406 KIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 446 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666555545444455555566655555555
No 229
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.51 E-value=1.7e+02 Score=18.47 Aligned_cols=15 Identities=13% Similarity=-0.113 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 027820 184 HVIALQKQSADLLLE 198 (218)
Q Consensus 184 d~~aLKKQae~l~~E 198 (218)
+-..|+.|.+.+..+
T Consensus 37 eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 37 QNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 230
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=20.35 E-value=3.2e+02 Score=21.53 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 162 VNLKKLKSECEQKDKQLETADAHVIALQKQSADLLLEYDRLLEDNQNLQKQ 212 (218)
Q Consensus 162 ~e~~kLk~el~~~~kel~~~~~d~~aLKKQae~l~~EYdrL~~e~~~l~~~ 212 (218)
.-.+.|+..|+.....-...+.++.+.+.-.-.+.++.+.|.++...|+..
T Consensus 96 ~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~ 146 (170)
T 3l4q_C 96 LNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKI 146 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 334455555544333222333343333333334555555565555555443
No 231
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.23 E-value=1.6e+02 Score=18.09 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027820 182 DAHVIALQKQSADLLLEYDRLLED 205 (218)
Q Consensus 182 ~~d~~aLKKQae~l~~EYdrL~~e 205 (218)
++|-..|.|=..|+..|.-||-.|
T Consensus 23 erdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 23 ERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHH
Confidence 345556667777777776666443
No 232
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.22 E-value=2.3e+02 Score=19.81 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHH
Q 027820 160 LSVNLKKLKSECEQ 173 (218)
Q Consensus 160 l~~e~~kLk~el~~ 173 (218)
|..|+..|+.+++.
T Consensus 48 Le~EN~~Lr~~v~~ 61 (87)
T 1hjb_A 48 LTAENERLQKKVEQ 61 (87)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 233
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.06 E-value=2.9e+02 Score=20.98 Aligned_cols=10 Identities=10% Similarity=0.302 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 027820 161 SVNLKKLKSE 170 (218)
Q Consensus 161 ~~e~~kLk~e 170 (218)
..|+++|-..
T Consensus 73 e~ElE~LTas 82 (135)
T 2e7s_A 73 NKEVEDLTAS 82 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444433
Done!