BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027821
(218 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19711|POLG_BVDVN Genome polyprotein OS=Bovine viral diarrhea virus (isolate NADL) PE=1
SV=2
Length = 3988
Score = 34.7 bits (78), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 20 LLLEIRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEW 76
L++E R I+ L + ++ NW K +PV++ + E + L ++F KVR EW
Sbjct: 3547 LVVEKRPRVIQYPEAKTRLAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFDKVRKEW 3602
>sp|Q96662|POLG_BVDVC Genome polyprotein OS=Bovine viral diarrhea virus (strain CP7) PE=1
SV=1
Length = 3907
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 38 LTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEW 76
L + ++ NW K +PV++ + E + L ++F KVR EW
Sbjct: 3484 LAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFNKVRKEW 3521
>sp|Q01499|POLG_BVDVS Genome polyprotein OS=Bovine viral diarrhea virus (strain SD-1) PE=3
SV=1
Length = 3898
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 38 LTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEW 76
L + ++ NW K +PV++ + E + L ++F KVR EW
Sbjct: 3475 LAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFNKVRKEW 3512
>sp|A1WZH9|RIMN_HALHL tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Halorhodospira halophila (strain DSM 244 / SL1)
GN=rimN PE=3 SV=1
Length = 191
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 114 RFADALLRELAGVTIPPDRIYGLGTGPK----VEVLKQLQKKPELQGMTLHFVEDR 165
R A A LR+ V P + ++GLG P+ V L L+ +PE QG+ L E R
Sbjct: 14 RHAAAELRQGGVVAYPTEAVWGLGCDPRNADAVARLLALKGRPERQGLILIAAESR 69
>sp|Q5NNZ0|TIG_ZYMMO Trigger factor OS=Zymomonas mobilis subsp. mobilis (strain ATCC
31821 / ZM4 / CP4) GN=tig PE=3 SV=1
Length = 492
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 15/117 (12%)
Query: 1 MHILRPVVETGYENLLLVRLLLEIRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWSE 60
IL V E +++L L RL +E I + ++ E+ + +E
Sbjct: 110 FEILPEVPEISFDDLKLERLTVEADNAVIDEK-------IKEFAEHQKSFDDSKKDHKAE 162
Query: 61 NRD-ALVDLFGKVRDEWMD----KDLTTWIGANRFYPGIPDAL---KFASSRIYIVT 109
N D +VD GKV E + D++ +GA +F PG + L K SR+ VT
Sbjct: 163 NGDLVVVDFVGKVDGEPFEGGTGSDMSVELGAGQFIPGFEEQLVGAKQGESRVLKVT 219
>sp|Q8RED8|LDH_FUSNN L-lactate dehydrogenase OS=Fusobacterium nucleatum subsp. nucleatum
(strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
GN=ldh PE=3 SV=1
Length = 318
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 94 IPDALKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQL 148
+PD +K + I++ T +REL+G P +R+ G GTG LK++
Sbjct: 104 VPDVVKAGFNGIFVTITNPVDIVTYFVRELSG--FPKNRVIGTGTGLDSARLKRI 156
>sp|Q97H81|RSMH_CLOAB Ribosomal RNA small subunit methyltransferase H OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=rsmH PE=3 SV=1
Length = 312
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 18/74 (24%)
Query: 137 GTGPKVEVLKQLQKKPELQGM------------------TLHFVEDRLATLKNVIKEPEL 178
G G E+LK+L K L G+ L FV D + +KN+++E ++
Sbjct: 32 GAGHSSEILKRLSSKGRLIGIDQDKDALKAASERLKEYKNLTFVHDNFSNIKNILEELKI 91
Query: 179 DGWNLYLGDWGYNT 192
D + L D G ++
Sbjct: 92 DKVDGILADLGVSS 105
>sp|Q7VIN8|TIG_HELHP Trigger factor OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1)
GN=tig PE=3 SV=1
Length = 442
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 20/161 (12%)
Query: 23 EIRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWSENRD-ALVDLFGKVRDEWMD--- 78
E+++ +I K+ + E L E I +N + + + E + D A +D G V + +
Sbjct: 128 EVKLKTISKNLIDERL--EEIAKNRAPLNEITQERTLQKDDTAQIDFEGFVDGKAFEGGK 185
Query: 79 -KDLTTWIGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIY 134
++ IG+N+F PG DAL K R VT + A L + A + +I
Sbjct: 186 GENFNLAIGSNQFIPGFEDALIGMKNGEKRTIKVTFPEQYQAKHLAGKEASFDVTLHKI- 244
Query: 135 GLGTGPKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKE 175
+ K+L K + ++ E L +LK++IKE
Sbjct: 245 ---------LQKELPKIDDEFAKSIAGEESNLQSLKDMIKE 276
>sp|Q9X6W7|TIG_AZOBR Trigger factor OS=Azospirillum brasilense GN=tig PE=3 SV=1
Length = 444
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 21/137 (15%)
Query: 20 LLLEIRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEW--- 76
L LE + ++ S+V E LT L + ++ + ED + + + + VR
Sbjct: 123 LELEKPVATVEDSAVDEALTR---LASAHSVQAPVTEDRAAEKGDIAVIDSPVRSTGEAL 179
Query: 77 --MD-KDLTTWIGANRFYPGIPDALKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRI 133
MD KD +GAN+F PG D L A + + T K + AD P DR+
Sbjct: 180 PGMDGKDYPLELGANQFVPGFEDQLVGAKAGEH-RTVKVTFPAD----------YPHDRL 228
Query: 134 YGLGTGPKVEVLKQLQK 150
G T +V+V K+L+K
Sbjct: 229 KGADTVFEVDV-KELRK 244
>sp|Q7VGY5|CLPX_HELHP ATP-dependent Clp protease ATP-binding subunit ClpX OS=Helicobacter
hepaticus (strain ATCC 51449 / 3B1) GN=clpX PE=3 SV=1
Length = 426
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 138 TGPKVEVLKQLQKKPELQGMTLHFVEDRLATL 169
T PK ++KQ QK E+ G TLHF +D + ++
Sbjct: 332 TKPKNALIKQYQKIFEIDGATLHFEKDAIESI 363
>sp|Q2RL30|CLPX_MOOTA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Moorella
thermoacetica (strain ATCC 39073) GN=clpX PE=3 SV=1
Length = 419
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 138 TGPKVEVLKQLQKKPELQGMTLHFVEDRLATL 169
T P+ ++KQ QK E+ G+TL F ED L T+
Sbjct: 322 TEPRNALVKQYQKLFEMDGVTLEFKEDALVTI 353
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,314,687
Number of Sequences: 539616
Number of extensions: 3345224
Number of successful extensions: 8986
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 8980
Number of HSP's gapped (non-prelim): 26
length of query: 218
length of database: 191,569,459
effective HSP length: 113
effective length of query: 105
effective length of database: 130,592,851
effective search space: 13712249355
effective search space used: 13712249355
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)