Query 027823
Match_columns 218
No_of_seqs 169 out of 425
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 18:02:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027823.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2192-2195//hhsearch_pdb/027823hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl5_A MGC83862 protein, quaki 1.0 1 1 305.1 5.2 129 70-198 2-130 (140)
2 1k1g_A SF1-BO isoform; splicin 1.0 1 1 256.0 7.7 125 66-197 3-130 (131)
3 2yqr_A KIAA0907 protein; struc 1.0 1 1 186.6 8.6 108 60-181 3-111 (119)
4 2opv_A KHSRP protein; KH domai 1.0 1 1 64.1 6.9 71 70-168 14-84 (85)
5 1x4m_A FAR upstream element bi 1.0 1 1 61.1 6.8 75 68-170 13-87 (94)
6 1x4n_A FAR upstream element bi 1.0 1 1 60.2 4.9 71 69-169 14-84 (92)
7 2hh2_A KH-type splicing regula 1.0 1 1 60.0 5.4 73 71-170 8-80 (107)
8 2hh3_A KH-type splicing regula 1.0 1 1 59.9 4.4 68 71-168 12-79 (106)
9 1dtj_A RNA-binding neurooncolo 1.0 1 1 59.6 6.4 73 69-168 2-74 (76)
10 1we8_A Tudor and KH domain con 1.0 1 1 58.9 5.5 73 68-168 13-85 (104)
No 1
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=1.00 E-value=1 Score=305.07 Aligned_cols=129 Identities=45% Similarity=0.851 Sum_probs=124.7
Q ss_pred EEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCH
Q ss_conf 69998438999999870114757896048888987397589934567789985433579999999999946999952952
Q 027823 70 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 149 (218)
Q Consensus 70 ~~~ki~IPv~~yP~~NfvGrILGPrG~TlK~IE~eTgckI~IRGrGS~kd~~~e~~l~g~pg~eh~~epLHVlI~a~~~~ 149 (218)
.++|||||+++||+|||||+||||||+|+|+||++|||||.|||+||+|+.++|+.++|+|+|+|++|||||+|+|++++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred CEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCH
T ss_conf 41699757655789884557888995449999999897589956887654443201368988544699837999961804
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 0699999999999997258897106899999999999752935799999
Q 027823 150 NIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREDSPG 198 (218)
Q Consensus 150 ~~~~~rl~~A~e~Ie~LL~pv~e~~D~~K~~QL~ELA~lNGt~r~~~~~ 198 (218)
++|+++|++|+++|++||.|++|++|++|++||+|||+||||||++...
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNGt~r~~~~~ 130 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLK 130 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGGGGS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 6699999999999999778998644699999999999963975788653
No 2
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=1.00 E-value=1 Score=256.00 Aligned_cols=125 Identities=38% Similarity=0.650 Sum_probs=111.9
Q ss_pred CCEEEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 44146999843899999987011475789604888898739758993456778998543357999999999994699995
Q 027823 66 YTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEA 145 (218)
Q Consensus 66 ~~vk~~~ki~IPv~~yP~~NfvGrILGPrG~TlK~IE~eTgckI~IRGrGS~kd~~~e~~l~g~pg~eh~~epLHVlI~a 145 (218)
...|.++||+||+++||+|||||+||||+|+|+|+||++|||+|.|||+||+++.+++ . .+...++|++|||||+|+|
T Consensus 3 ~~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~-~-~~~~~~~~~~e~lhV~I~a 80 (131)
T 1k1g_A 3 MATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVG-R-KDGQMLPGEDEPLHALVTA 80 (131)
T ss_dssp --CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSS-S-CCCCCSCCSSCCEEEEEEE
T ss_pred CCCEEEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCCC-C-CCCCCCCCCCCCEEEEEEE
T ss_conf 7735899999787546675632568778967999999988985996477665443223-4-5665453568981899997
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 295206999999999999972588---9710689999999999975293579999
Q 027823 146 DLPANIVDIRLRQAQEIIEELLKP---VDESQDYIKRQQLRELAMLNSNFREDSP 197 (218)
Q Consensus 146 ~~~~~~~~~rl~~A~e~Ie~LL~p---v~e~~D~~K~~QL~ELA~lNGt~r~~~~ 197 (218)
++++ ++++|+++|+.||.. +++++|++|++||+|||++|||||++++
T Consensus 81 ~~~e-----~~~~A~~~I~~ll~~~~~~p~~~d~~k~~Ql~eLa~~nGt~r~~~~ 130 (131)
T 1k1g_A 81 NTME-----NVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN 130 (131)
T ss_dssp SSHH-----HHHHHHHHHHHHHTTTTSCCTTSSGGGGGGGHHHHHHHTCCC----
T ss_pred CCHH-----HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 8999-----9999999999998625799952789999999999997396788678
No 3
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=186.58 Aligned_cols=108 Identities=25% Similarity=0.350 Sum_probs=93.2
Q ss_pred CCCCCCCCEEEEEEEECCCC-CCCCCCEEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999544146999843899-99998701147578960488889873975899345677899854335799999999999
Q 027823 60 PASPSSYTVKRILRLEIPVD-TYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDP 138 (218)
Q Consensus 60 p~~~~~~~vk~~~ki~IPv~-~yP~~NfvGrILGPrG~TlK~IE~eTgckI~IRGrGS~kd~~~e~~l~g~pg~eh~~ep 138 (218)
..++++ ++...+|||||++ .||+|||+|+||||+|+|+|+|+++|||||.|||+||++.... ..++++||
T Consensus 3 ~~~~~~-~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~--------~~~e~~e~ 73 (119)
T 2yqr_A 3 SGSSGG-MHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPA--------SGREAFEP 73 (119)
T ss_dssp CCCCSC-CSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTT--------TSSCCSSB
T ss_pred CCCCCC-EEEEEEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCEEEEECCCCCCCCCC--------CCCCCCCC
T ss_conf 889998-057789997687667899772356888997489999998899899814776654666--------56566888
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 4699995295206999999999999972588971068999999
Q 027823 139 LHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQ 181 (218)
Q Consensus 139 LHVlI~a~~~~~~~~~rl~~A~e~Ie~LL~pv~e~~D~~K~~Q 181 (218)
|||+|++.+++ .+++|+++|+.||.++.+.++.||++|
T Consensus 74 l~V~I~a~~~e-----~i~~A~~~Ie~Ll~~v~~~~~~~~~q~ 111 (119)
T 2yqr_A 74 MYIYISHPKPE-----GLAAAKKLCENLLQTVHAEYSRFVNQI 111 (119)
T ss_dssp CEEEEEESSHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCHH-----HHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf 47999969999-----999999999998555577999999963
No 4
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=64.13 Aligned_cols=71 Identities=23% Similarity=0.421 Sum_probs=55.7
Q ss_pred EEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCH
Q ss_conf 69998438999999870114757896048888987397589934567789985433579999999999946999952952
Q 027823 70 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 149 (218)
Q Consensus 70 ~~~ki~IPv~~yP~~NfvGrILGPrG~TlK~IE~eTgckI~IRGrGS~kd~~~e~~l~g~pg~eh~~epLHVlI~a~~~~ 149 (218)
.+..+.||. +++|+|||++|.++|.|+++|||+|.|...|+. + ...+-.|.|++ +++
T Consensus 14 ~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~------------~----~~~er~v~I~G-~~~ 70 (85)
T 2opv_A 14 TVQEIMIPA------GKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ------------N----TNVDKPLRIIG-DPY 70 (85)
T ss_dssp EEEEEEECT------TTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCS------------S----TTSCEEEEEEE-CHH
T ss_pred EEEEEEECH------HHEEEEECCCCHHHHHHHHHHCCEEEECCCCCC------------C----CCCCEEEEEEE-CHH
T ss_conf 899999496------562255899977899999987997997488877------------7----88842799995-999
Q ss_pred HHHHHHHHHHHHHHHHHCC
Q ss_conf 0699999999999997258
Q 027823 150 NIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 150 ~~~~~rl~~A~e~Ie~LL~ 168 (218)
.+++|+++|+.++.
T Consensus 71 -----~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 71 -----KVQQACEMVMDILR 84 (85)
T ss_dssp -----HHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHC
T ss_conf -----99999999999840
No 5
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=1.00 E-value=1 Score=61.13 Aligned_cols=75 Identities=20% Similarity=0.401 Sum_probs=57.6
Q ss_pred EEEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 14699984389999998701147578960488889873975899345677899854335799999999999469999529
Q 027823 68 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADL 147 (218)
Q Consensus 68 vk~~~ki~IPv~~yP~~NfvGrILGPrG~TlK~IE~eTgckI~IRGrGS~kd~~~e~~l~g~pg~eh~~epLHVlI~a~~ 147 (218)
-..+.++.||. .++|+|||++|.++|+|+++|||+|.|...+... ....-.|.|++ +
T Consensus 13 ~~~~~~i~Ip~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~----------------~~~~r~v~I~G-~ 69 (94)
T 1x4m_A 13 GNAVQEIMIPA------SKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN----------------TGADKPLRITG-D 69 (94)
T ss_dssp CCEEEEEEECH------HHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS----------------SCSCEEEEEEE-C
T ss_pred CCEEEEEEECH------HHCCEEECCCCHHHHHHHHHHCCEEEECCCCCCC----------------CCCCEEEEEEE-C
T ss_conf 85899999884------2416578998877999999879869963788888----------------89833899981-9
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 52069999999999999725889
Q 027823 148 PANIVDIRLRQAQEIIEELLKPV 170 (218)
Q Consensus 148 ~~~~~~~rl~~A~e~Ie~LL~pv 170 (218)
++ .+++|+++|+.++...
T Consensus 70 ~~-----~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 70 PY-----KVQQAKEMVLELIRDQ 87 (94)
T ss_dssp TT-----THHHHHHHHHHHHCCC
T ss_pred HH-----HHHHHHHHHHHHHHCC
T ss_conf 99-----9999999999997255
No 6
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=1.00 E-value=1 Score=60.20 Aligned_cols=71 Identities=15% Similarity=0.426 Sum_probs=54.1
Q ss_pred EEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 46999843899999987011475789604888898739758993456778998543357999999999994699995295
Q 027823 69 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 148 (218)
Q Consensus 69 k~~~ki~IPv~~yP~~NfvGrILGPrG~TlK~IE~eTgckI~IRGrGS~kd~~~e~~l~g~pg~eh~~epLHVlI~a~~~ 148 (218)
..+.++.||. +++|+|||++|.++|+|+++|||+|.|.... + ....-.|.|++. +
T Consensus 14 ~~~~~i~Ip~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~--------------~----g~~~r~v~I~G~-~ 68 (92)
T 1x4n_A 14 VMTEEYKVPD------GMVGFIIGRGGEQISRIQQESGCKIQIAPDS--------------G----GLPERSCMLTGT-P 68 (92)
T ss_dssp CEEEEEEEEH------HHHHHHHCSSSHHHHHHHHHSCCEEEECSCC--------------T----TCSEEEEEEEEC-H
T ss_pred CEEEEEEECH------HHCCEEECCCCHHHHHHHHHHCCEEEECCCC--------------C----CCCCCEEEEEEC-H
T ss_conf 7799999886------7723207999568999999869789976888--------------9----997528999819-9
Q ss_pred HHHHHHHHHHHHHHHHHHCCC
Q ss_conf 206999999999999972588
Q 027823 149 ANIVDIRLRQAQEIIEELLKP 169 (218)
Q Consensus 149 ~~~~~~rl~~A~e~Ie~LL~p 169 (218)
+ .+++|+++|+.++..
T Consensus 69 e-----~v~~A~~~I~~~i~~ 84 (92)
T 1x4n_A 69 E-----SVQSAKRLLDQIVEK 84 (92)
T ss_dssp H-----HHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHHH
T ss_conf 9-----999999999999972
No 7
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=60.00 Aligned_cols=73 Identities=23% Similarity=0.379 Sum_probs=54.0
Q ss_pred EEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHH
Q ss_conf 99984389999998701147578960488889873975899345677899854335799999999999469999529520
Q 027823 71 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 150 (218)
Q Consensus 71 ~~ki~IPv~~yP~~NfvGrILGPrG~TlK~IE~eTgckI~IRGrGS~kd~~~e~~l~g~pg~eh~~epLHVlI~a~~~~~ 150 (218)
+.++.||. +++|+|||++|.++|+|+++|||+|.|..... +. .....-.|.|++ +++
T Consensus 8 ~~~i~IP~------~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~-------------~~--~~~~~r~V~I~G-~~e- 64 (107)
T 2hh2_A 8 EMTFSIPT------HKCGLVIGRGGENVKAINQQTGAFVEISRQLP-------------PN--GDPNFKLFIIRG-SPQ- 64 (107)
T ss_dssp CEEEEEEG------GGTTTTSTTTTCHHHHHHHHSSSEEEECCCCC-------------TT--CCTTEEEEEEES-CHH-
T ss_pred EEEEEECH------HHCCCCCCCCCHHHHHHHHHHCCEEEECCCCC-------------CC--CCCCCEEEEEEC-CHH-
T ss_conf 69999897------88196489984799999998098799767667-------------77--888865999978-999-
Q ss_pred HHHHHHHHHHHHHHHHCCCC
Q ss_conf 69999999999999725889
Q 027823 151 IVDIRLRQAQEIIEELLKPV 170 (218)
Q Consensus 151 ~~~~rl~~A~e~Ie~LL~pv 170 (218)
.+++|+++|+.++.-.
T Consensus 65 ----~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 65 ----QIDHAKQLIEEKIEGP 80 (107)
T ss_dssp ----HHHHHHHHHHHHSCSC
T ss_pred ----HHHHHHHHHHHHHHCC
T ss_conf ----9999999999998625
No 8
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=59.92 Aligned_cols=68 Identities=24% Similarity=0.429 Sum_probs=52.0
Q ss_pred EEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHH
Q ss_conf 99984389999998701147578960488889873975899345677899854335799999999999469999529520
Q 027823 71 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 150 (218)
Q Consensus 71 ~~ki~IPv~~yP~~NfvGrILGPrG~TlK~IE~eTgckI~IRGrGS~kd~~~e~~l~g~pg~eh~~epLHVlI~a~~~~~ 150 (218)
+.++.||. +++|+|||+.|.++|+|+++|+|+|.|.... + ...+-.|.|++. ++
T Consensus 12 ~~~i~Ip~------~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~--------------~----~~~er~V~I~G~-~e- 65 (106)
T 2hh3_A 12 GIDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--------------G----TGPEKIAHIMGP-PD- 65 (106)
T ss_dssp CEEEEEET------TTHHHHHTTTTHHHHHHHHHHTCEEEECSSC--------------S----SSSEEEEEEESS-HH-
T ss_pred EEEEEECH------HHCCCCCCCCCHHHHHHHHHHCCEEEEECCC--------------C----CCCEEEEEEEEC-HH-
T ss_conf 79999898------9819657888578999999989679983688--------------9----986168999919-99-
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 699999999999997258
Q 027823 151 IVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 151 ~~~~rl~~A~e~Ie~LL~ 168 (218)
.+++|+++|++++.
T Consensus 66 ----~v~~A~~~I~~ii~ 79 (106)
T 2hh3_A 66 ----RCEHAARIINDLLQ 79 (106)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHH
T ss_conf ----99999999999974
No 9
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=1.00 E-value=1 Score=59.57 Aligned_cols=73 Identities=32% Similarity=0.568 Sum_probs=55.2
Q ss_pred EEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 46999843899999987011475789604888898739758993456778998543357999999999994699995295
Q 027823 69 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 148 (218)
Q Consensus 69 k~~~ki~IPv~~yP~~NfvGrILGPrG~TlK~IE~eTgckI~IRGrGS~kd~~~e~~l~g~pg~eh~~epLHVlI~a~~~ 148 (218)
+.+.++.||. +++|+|||++|.++|.|+++|||+|.|...+... |+ ...-.|.|++. +
T Consensus 2 ~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~-----------~~----~~~~~v~I~G~-~ 59 (76)
T 1dtj_A 2 KELVEMAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFL-----------PG----TRNRRVTITGS-P 59 (76)
T ss_dssp CEEEEEEEET------TTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS-----------TT----CCEEEEEEEES-H
T ss_pred CEEEEEEECH------HHCCEEECCCCHHHHHHHHHHCCEEEECCCCCCC-----------CC----CCEEEEEEEEC-H
T ss_conf 5699999876------8824578789568999999819889988688889-----------99----96169999909-9
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 20699999999999997258
Q 027823 149 ANIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 149 ~~~~~~rl~~A~e~Ie~LL~ 168 (218)
+ .+.+|.++|+.++.
T Consensus 60 ~-----~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 60 A-----ATQAAQYLISQRVT 74 (76)
T ss_dssp H-----HHHHHHHHHHHHCC
T ss_pred H-----HHHHHHHHHHHHHH
T ss_conf 9-----99999999999986
No 10
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=1.00 E-value=1 Score=58.95 Aligned_cols=73 Identities=19% Similarity=0.300 Sum_probs=55.1
Q ss_pred EEEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 14699984389999998701147578960488889873975899345677899854335799999999999469999529
Q 027823 68 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADL 147 (218)
Q Consensus 68 vk~~~ki~IPv~~yP~~NfvGrILGPrG~TlK~IE~eTgckI~IRGrGS~kd~~~e~~l~g~pg~eh~~epLHVlI~a~~ 147 (218)
...+.++.||. +++|+|||++|.++|.|+++|||+|.|-..... ...+.-.|.|.+..
T Consensus 13 ap~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~----------------~~~~~~~V~I~G~~ 70 (104)
T 1we8_A 13 TPVFEQLSVPQ------RSVGRIIGRGGETIRSICKASGAKITCDKESEG----------------TLLLSRLIKISGTQ 70 (104)
T ss_dssp CEEEEEEEEET------TTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC----------------SSSSEEEEEEEEEH
T ss_pred CCEEEEEEECH------HHEEEEECCCCHHHHHHHHHHCCEEEEECCCCC----------------CCCCCCEEEEECCH
T ss_conf 98789999883------245144898877899999998988998367777----------------88886369998099
Q ss_pred CHHHHHHHHHHHHHHHHHHCC
Q ss_conf 520699999999999997258
Q 027823 148 PANIVDIRLRQAQEIIEELLK 168 (218)
Q Consensus 148 ~~~~~~~rl~~A~e~Ie~LL~ 168 (218)
. .+++|+++|+.++.
T Consensus 71 ~------~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 71 K------EVAAAKHLILEKVS 85 (104)
T ss_dssp H------HHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHH
T ss_conf 9------99999999999986
Done!