BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027824
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 283 bits (723), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 128/174 (73%), Positives = 157/174 (90%)
Query: 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
YDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
AGQERYR ITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK+D
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAV 183
LRHL AV T++ +AFAE+ +L F+ETSALD+TNVE AF +LT+IY+IVS++ +
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 175
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 280 bits (716), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 128/172 (74%), Positives = 153/172 (88%)
Query: 6 PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQ 65
P YDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQ
Sbjct: 13 PRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 72
Query: 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIG 125
IWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+G
Sbjct: 73 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 132
Query: 126 NKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
NK+DLRHL AV T++ +AFAE+ L F+ETSALD+TNVE AF +LT+IY+I
Sbjct: 133 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 280 bits (716), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 128/169 (75%), Positives = 153/169 (90%)
Query: 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQI
Sbjct: 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
WDTAGQERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GN
Sbjct: 83 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY 175
K+DLRHL AV T++ +AFAE+ L F+ETSALD+TNVE AF +LT+IY
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 277 bits (708), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 127/170 (74%), Positives = 153/170 (90%)
Query: 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIW
Sbjct: 3 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 62
Query: 68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
DTAG ERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK
Sbjct: 63 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 122
Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
+DLRHL AV T++ +AFAE+ L F+ETSALD+TNVE AF +LT+IY+I
Sbjct: 123 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 277 bits (708), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 127/169 (75%), Positives = 152/169 (89%)
Query: 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQI
Sbjct: 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
WDTAG ERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GN
Sbjct: 83 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY 175
K+DLRHL AV T++ +AFAE+ L F+ETSALD+TNVE AF +LT+IY
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 274 bits (701), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 126/169 (74%), Positives = 151/169 (89%)
Query: 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
WDTAG ERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ L+GN
Sbjct: 65 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 124
Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY 175
K+DLRHL AV T++ +AFAE+ L F+ETSALD+TNVE AF +LT+IY
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 271 bits (693), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 125/167 (74%), Positives = 149/167 (89%)
Query: 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWD
Sbjct: 1 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
TAG ERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ L+GNK+
Sbjct: 61 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 120
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY 175
DLRHL AV T++ +AFAE+ L F+ETSALD+TNVE AF +LT+IY
Sbjct: 121 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 254 bits (650), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 128/216 (59%), Positives = 165/216 (76%), Gaps = 9/216 (4%)
Query: 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
+YD LFK+VLIGDSGVGKSNLLSRFTKNEFN++SKSTIGVEFATR+L I+ K +KAQIWD
Sbjct: 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
TAGQERYRAITSAYYRGAVGAL+VYD+++ ++++N WL ELRE+ D N+ V LIGNK+
Sbjct: 69 TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKS 128
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAG-- 186
DL HL AV TE+ K FA++ L F ETSAL++ NV+ AF E++ IY+ VSK ++ G
Sbjct: 129 DLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDS 188
Query: 187 -SNGTA--STLPSKGETINVKDDSSVLKRI---GCC 216
+NG A ++ P+ G TI++ + K+ CC
Sbjct: 189 SANGNANGASAPN-GPTISLTPTPNENKKANGNNCC 223
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 254 bits (648), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 115/173 (66%), Positives = 152/173 (87%), Gaps = 1/173 (0%)
Query: 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI-DNKVVKAQIWD 68
YDYLFK+VLIGDSGVGKSNLLSRFT++EFNLESKSTIGVEFAT+S+++ +NK++KAQIWD
Sbjct: 4 YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
TAGQERYRAITSAYYRGAVGALLVYD+T+ +F+N+ +WL+ELR++ D NI+++L+GNK+
Sbjct: 64 TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKS 123
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 181
DL+HL ++ D +A++E L F+ETSAL+ATNVE AF ++L +IY + K+
Sbjct: 124 DLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKK 176
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 244 bits (622), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 113/176 (64%), Positives = 146/176 (82%)
Query: 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
+YDYLFK+VLIGDSGVGKSNLLSRFT +EFN+ESKSTIGVEFATR++ ++NK +KAQIWD
Sbjct: 6 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
TAG ERYRAITSAYYRGAVGAL+VYD+++ ++++N WL ELRE+ D N+ V LIGNK+
Sbjct: 66 TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKS 125
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 184
DL HL AV T++ K FA + + F ETSAL++ NV+ AF E++ I+++VSK V+
Sbjct: 126 DLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVD 181
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 229 bits (585), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 108/177 (61%), Positives = 142/177 (80%)
Query: 5 KPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKA 64
+ E+Y+++FK+VLIG+SGVGK+NLLSRFT+NEF+ +S++TIGVEF+TR++ + VKA
Sbjct: 17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA 76
Query: 65 QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLI 124
QIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+ V RWL+EL +H + I+VML+
Sbjct: 77 QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 136
Query: 125 GNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 181
GNK+DL V TE+ + FAE L F+ETSALD+TNVE AF VL +I+ VSK+
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 229 bits (584), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 141/174 (81%)
Query: 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
E+Y+++FK+VLIG+SGVGK+NLLSRFT+NEF+ +S++TIGVEF+TR++ + VKAQIW
Sbjct: 5 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 64
Query: 68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
DTAG ERYRAITSAYYRGAVGALLV+D+T+H T+ V RWL+EL +H + I+VML+GNK
Sbjct: 65 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNK 124
Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 181
+DL V TE+ + FAE L F+ETSALD+TNVE AF VL +I+ VSK+
Sbjct: 125 SDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 190 bits (483), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 91/167 (54%), Positives = 117/167 (70%)
Query: 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R + ID K +K QIWDT
Sbjct: 7 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
AGQE +R+IT +YYRGA GALLVYD+TR TF ++ WL + R+H++ N+++MLIGNK+D
Sbjct: 67 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 126
Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
L V E+G+AFA + L FMETSA A+NVE AF +IY+
Sbjct: 127 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYE 173
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 116/169 (68%)
Query: 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71
YLFK ++IGD+GVGKS LL +FT F TIGVEF R + ID K +K QIWDTAG
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131
QE +R+IT +YYRGA GALLVYD+TR TF ++ WL + R+H+ N+++MLIGNK+DL
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
V E+G+AFA + L FMETSA A NVE AF +IY+ + +
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 185 bits (470), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 117/167 (70%)
Query: 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
Y Y+FK ++IGD GVGKS LL +FT+ +F + TIGVEF TR + + + +K QIWDT
Sbjct: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 71
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
AGQER+RA+T +YYRGA GAL+VYD+TR +T+ ++ WL + R T+PN +++LIGNK D
Sbjct: 72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 131
Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
L V+ E+ K FAE+ L F+E SA NVE+AF E +IY+
Sbjct: 132 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 184 bits (468), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 136/210 (64%), Gaps = 5/210 (2%)
Query: 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
+ EYDYLFKL+LIG+SGVGKS LL RF+ + + + STIGV+F +++ +D K VK QI
Sbjct: 2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
WDTAGQER+R ITS+YYRG+ G ++VYDVT +F V WL+E+ + ++ +L+GN
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAG 186
K DL+ V + K FA+ + F+ETSALD+TNVE+AF + QI + +S++ +
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL--- 178
Query: 187 SNGTASTLPSKGETINVKDDSSVLKRIGCC 216
N T KG +N+K S GCC
Sbjct: 179 -NETTQKKEDKG-NVNLKGQSLTNTGGGCC 206
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 183 bits (465), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 137/210 (65%), Gaps = 6/210 (2%)
Query: 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
+ EYDYLFKL+LIG+SGVGKS LL RF+ + + + STIGV+F +++ +D K VK QI
Sbjct: 2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
WDTAGQER+R ITS+YYRG+ G ++VYDVT +F V WL+E+ + ++ +L+GN
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAG 186
K DL+ V + K FA+ + F+ETSALD+TNVE+AF + QI + +S++ +
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL--- 178
Query: 187 SNGTASTLPSKGETINVKDDSSVLKRIGCC 216
N T KG +N+K S+ GCC
Sbjct: 179 -NETTQKKEDKG-NVNLK-GQSLTNTGGCC 205
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 116/167 (69%)
Query: 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
Y Y+FK ++IGD GVGKS LL +FT+ +F + TIGVEF TR + + + +K QIWDT
Sbjct: 27 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 86
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
AGQ R+RA+T +YYRGA GAL+VYD+TR +T+ ++ WL + R T+PN +++LIGNK D
Sbjct: 87 AGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 146
Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
L V+ E+ K FAE+ L F+E SA NVE+AF E +IY+
Sbjct: 147 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 193
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/187 (48%), Positives = 121/187 (64%), Gaps = 2/187 (1%)
Query: 1 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
M+ P EYDYLFKL+LIGDSGVGKS LL RF + + STIGV+F R++ +D K
Sbjct: 6 MSSMNP--EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK 63
Query: 61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
+K QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F NV +WL+E+ + N+
Sbjct: 64 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN 123
Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 180
+L+GNK DL V K FA+ + F+ETSA +ATNVE +F + +I K +
Sbjct: 124 KLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGP 183
Query: 181 RAVEAGS 187
A G+
Sbjct: 184 GATAGGA 190
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 3 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVV 62
G+ P EYDYLFKL+LIGDSGVGKS LL RF + + STIGV+F R++ +D K +
Sbjct: 1 GHMP--EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 58
Query: 63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM 122
K QIWDTAGQER+R ITS+YYRGA G ++VYDVT ++ NV +WL+E+ + N+ +
Sbjct: 59 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKL 118
Query: 123 LIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
L+GNK+DL V K FA+ + F+ETSA +ATNVE AF + +I K
Sbjct: 119 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKK 172
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 3 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVV 62
G+ P EYDYLFKL+LIGDSGVGKS LL RF + + STIGV+F R++ +D K +
Sbjct: 1 GHMP--EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 58
Query: 63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM 122
K QIWDTAGQER+R ITS+YYRGA G ++VYDVT ++ NV +WL+E+ + N+ +
Sbjct: 59 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKL 118
Query: 123 LIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
L+GNK+DL V K FA+ + F+ETSA +ATNVE AF + +I K
Sbjct: 119 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKK 172
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 117/166 (70%)
Query: 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
EYDYLFKL+LIG+SGVGKS LL RF+ + + + STIGV+F +++ +D K VK QIWD
Sbjct: 17 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
TAGQER+R ITS+YYRG+ G ++VYDVT +F V WL+E+ + ++ +L+GNK
Sbjct: 77 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 136
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
DL+ V + K FA+ + F+ETSALD+TNVE+AF + QI
Sbjct: 137 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 176 bits (446), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 120/170 (70%), Gaps = 1/170 (0%)
Query: 6 PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQ 65
PDE+YD+LFKLVL+GD+ VGK+ ++ RF F+ STIGV+F ++L I K VK Q
Sbjct: 22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQ 81
Query: 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIG 125
IWDTAGQER+R IT +YYR A GA+L YD+T+ ++F +V W+ ++R++ NI+ +LIG
Sbjct: 82 IWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIG 141
Query: 126 NKTDLRHLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
NK+DL L VS + ++ AE + L +ETSA D++NVE AF V T++
Sbjct: 142 NKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 176 bits (446), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 111/158 (70%)
Query: 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
YDYLFKL+LIGDSGVGK+ +L RF+++ FN STIG++F R++ +D K +K QIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
AGQER+R IT+AYYRGA+G +LVYD+T +F N+ W+R + EH ++ M++GNK D
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
+ VS E G+ A + FMETSA NVENAF
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 176 bits (446), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 114/168 (67%)
Query: 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
EYDYLFKL+LIGDSGVGKS LL RF + + STIGV+F R++ +D K +K QIWD
Sbjct: 21 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 80
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
TAGQER+R ITS+YYRGA G ++VYDVT +F NV +WL+E+ + N+ +L+GNK
Sbjct: 81 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 140
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
DL V K FA+ + F+ETSA +ATNVE +F + +I K
Sbjct: 141 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 188
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 114/168 (67%)
Query: 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
EYDYLFKL+LIGDSGVGKS LL RF + + STIGV+F R++ +D K +K QIWD
Sbjct: 2 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
TAGQER+R ITS+YYRGA G ++VYDVT +F NV +WL+E+ + N+ +L+GNK
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
DL V K FA+ + F+ETSA +ATNVE +F + +I K
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 169
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/176 (50%), Positives = 121/176 (68%), Gaps = 2/176 (1%)
Query: 3 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVV 62
G P EYDYLFKL+LIGDSGVGKS LL RF + + STIGV+F R++ ++NK V
Sbjct: 1 GMNP--EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTV 58
Query: 63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM 122
K QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F NV +W++E+ + N+ +
Sbjct: 59 KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKL 118
Query: 123 LIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIV 178
L+GNK DL V++++G+ A+ + F+ETSA +A NVE AF + +I K V
Sbjct: 119 LVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 117/176 (66%), Gaps = 2/176 (1%)
Query: 1 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK 60
M+ P EYDYLFKL+LIGDSGVGK+ LL RF + + STIGV+F R++ +D K
Sbjct: 6 MSSMNP--EYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGK 63
Query: 61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120
+K QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F NV +WL+E+ + N+
Sbjct: 64 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN 123
Query: 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
+L+GNK DL V K FA+ + F+ETSA +ATNVE +F + +I K
Sbjct: 124 KLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 114/170 (67%)
Query: 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
+ EYDYLFKL+LIGDSGVGKS LL RF + + STIGV+F R++ +D K +K QI
Sbjct: 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
WDTAGQER+R ITS+YYRGA G ++VYDVT +F NV +WL+E+ + N+ +L+GN
Sbjct: 87 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
K DL V K FA+ + F+ETSA +ATNVE +F +I K
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKK 196
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 173 bits (438), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 110/157 (70%)
Query: 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
DYLFKL+LIGDSGVGK+ +L RF+++ FN STIG++F R++ +D K +K QIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
GQER+R IT+AYYRGA+G +LVYD+T +F N+ W+R + EH ++ M++GNK D+
Sbjct: 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
VS E G+ A + FMETSA NVENAF
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 160
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/170 (50%), Positives = 114/170 (67%)
Query: 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
+ EYDYLFKL+LIGDSGVGKS LL RF + + STIGV+F R++ +D K +K QI
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
WDTAGQER+R ITS+YYRGA G ++VYDVT +F NV +WL+E+ + N+ +L+G
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGI 121
Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
K DL V K FA+ + F+ETSA +ATNVE +F + +I K
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 171
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/168 (51%), Positives = 113/168 (67%)
Query: 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
EYD LFKL+LIGDSGVGKS LL RF + + STIGV+F R++ +D K +K QIWD
Sbjct: 2 EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
TAGQER+R ITS+YYRGA G ++VYDVT +F NV +WL+E+ + N+ +L+GNK
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
DL V K FA+ + F+ETSA +ATNVE +F + +I K
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 169
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 107/157 (68%)
Query: 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
D+LFK ++IG +G GKS LL +F +N+F +S TIGVEF +R + + K VK QIWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
GQER+R++T +YYRGA GALLVYD+T T+ ++ WL + R PNI+V+L GNK DL
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
V+ + FA++ L F+ETSAL NVE AF
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 79/167 (47%), Positives = 110/167 (65%)
Query: 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
E YD+LFK ++IG++G GKS LL +F + +F +S TIGVEF ++ + + K VK QIW
Sbjct: 5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
DTAGQER+R++T +YYRGA GALLVYD+T T+ + WL + R NI+++L GNK
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 124
Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
DL V+ + FA++ L F+ETSAL NVE AF + +I
Sbjct: 125 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 162 bits (411), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 114/163 (69%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLVL+GD G GKS+L+ RF K++F +STIG F +++L +++ VK +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134
Y ++ YYRGA A++V+DVT A+F+ +W++EL+ +PN+++ L GNK+DL
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 135 AVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
V+ ED + +A++ L+FMETSA ATNV+ F E+ ++ ++
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 108/162 (66%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KL+LIGDSGVGKS LL RF + + STIGV+F R++ +D K +K QIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134
+R ITS+YYRGA G ++VYDVT +F NV +WL+E+ + N+ +L+GNK DL
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 135 AVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
V K FA+ + F+ETSA +ATNVE +F + +I K
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 162
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 110/167 (65%)
Query: 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
E YD+LFK ++IG++G GKS LL +F + +F +S TIGVEF ++ + + K VK QIW
Sbjct: 6 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
DTAGQER+R++T +YYRGA GALLVYD+T T+ + WL + R NI+++L GNK
Sbjct: 66 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 125
Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
DL V+ + FA++ L F+ETSAL +VE AF + +I
Sbjct: 126 KDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/159 (51%), Positives = 107/159 (67%), Gaps = 1/159 (0%)
Query: 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWD 68
+YD+LFKL++IGDSGVGKS+LL RF N F+ +TIGV+F R++ I+ + VK QIWD
Sbjct: 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
TAGQER+R ITS YYRG G ++VYDVT +F NV RWL E+ ++ D ++ +L+GNK
Sbjct: 65 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKN 123
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
D V TED FA Q + ETSA + NVE F
Sbjct: 124 DDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 160 bits (405), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 115/167 (68%)
Query: 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
E+YD+LFK+VLIG++GVGK+ L+ RFT+ F +TIGV+F +++ I+ + VK QIW
Sbjct: 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80
Query: 68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
DTAGQER+R+IT +YYR A +L YD+T +F+ + WLRE+ ++ +I +L+GNK
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 140
Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
DL VS + + F+E + +Y++ETSA ++ NVE F ++ ++
Sbjct: 141 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 160 bits (404), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 108/163 (66%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+G+S VGKS+L+ RF K +F+ +STIG F T+S+ +D+ VK +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
RY ++ YYRGA A++VYD+T TF W++EL+ P+I++ L GNK DL +
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
V E+ +A+A+ SL FMETSA A NV + F + ++ K
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK 171
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 159 bits (403), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 122/181 (67%), Gaps = 2/181 (1%)
Query: 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
+ YD + K++LIGDSGVGKS LL RF +++FN +TIG++F +++ I+ K VK Q+W
Sbjct: 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLW 74
Query: 68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
DTAGQER+R IT+AYYRGA+G +LVYDVT TF N+ +W + + EH + ++L+GNK
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNK 134
Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY-KIVSKRAVEAG 186
+D+ V V+ + G+A A++ + F+E+SA + NV F + I KI S + V G
Sbjct: 135 SDMETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVG 193
Query: 187 S 187
+
Sbjct: 194 N 194
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 109/167 (65%)
Query: 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIW 67
E YD+LFK ++IG++G GKS LL +F + +F +S TIGVEF ++ + + K VK QIW
Sbjct: 3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127
DTAG ER+R++T +YYRGA GALLVYD+T T+ + WL + R NI+++L GNK
Sbjct: 63 DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 122
Query: 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
DL V+ + FA++ L F+ETSAL +VE AF + +I
Sbjct: 123 KDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 104/157 (66%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+G+S VGKS+L+ RF K +F+ +STIG F T+++ +D+ VK +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
RY ++ YYRGA A++VYD+T TF W++EL+ PNI++ L GNK DL
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
AV ++ +A+A+ SL FMETSA A NV F +
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 160
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 156 bits (395), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 111/157 (70%), Gaps = 1/157 (0%)
Query: 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
D + K++LIGDSGVGKS LL RF +++FN +TIG++F +++ I+ K VK QIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
GQER+R IT+AYYRGA+G +LVYD+T TF N+ +W + + EH + ++L+GNK+D+
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
V V+ + G+A A++ + F+E+SA + NV F
Sbjct: 121 ETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 108/163 (66%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+G+S VGKS+L+ RF K +F+ +STIG F T+++ +D+ VK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
RY ++ YYRGA A++VYD+T +F W++EL+ PNI++ L GNK DL +
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
AV ++ +++A+ SL FMETSA + NV F + ++ K
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 108/163 (66%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+G+S VGKS+L+ RF K +F+ +STIG F T+++ +D+ VK +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
RY ++ YYRGA A++VYD+T +F W++EL+ PNI++ L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
AV ++ +++A+ SL FMETSA + NV F + ++ K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 108/163 (66%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+G+S VGKS+L+ RF K +F+ +STIG F T+++ +D+ VK +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
RY ++ YYRGA A++VYD+T +F W++EL+ PNI++ L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
AV ++ +++A+ SL FMETSA + NV F + ++ K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 103/157 (65%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+G+S VGKS+L+ RF K +F+ +STI F T+++ +D+ VK +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
RY ++ YYRGA A++VYD+T TF W++EL+ PNI++ L GNK DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
AV ++ +A+A+ SL FMETSA A NV F +
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 108/163 (66%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+G+S VGKS+L+ RF K +F+ +STIG F T+++ +D+ VK +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
RY ++ YYRGA A++VYD+T +F W++EL+ PNI++ L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
AV ++ +++A+ SL FMETSA + NV F + ++ K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 105/161 (65%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+G+S VGKS+L+ RF K +F+ +STIG F T+++ +D+ VK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
RY ++ YYRGA A++VYD+T TF W++EL+ PNI++ L GNK DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
AV ++ +A+A+ SL FMETSA A NV F + ++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Query: 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES-KSTIGVEFATRSLRIDNKVVKAQIWD 68
YD FK++L+GDSGVGK+ LL RF F + ST+G++F + L +D VK Q+WD
Sbjct: 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128
TAGQER+R++T AYYR A LL+YDVT A+F N+ WL E+ E+ ++ +ML+GNK
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
D H V EDG+ A++ L FMETSA NV+ AFT + ++
Sbjct: 127 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 108/163 (66%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+G+S VGKS+L+ RF K +F+ +STIG F T+++ +D+ VK +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
RY ++ YYRGA A++VYD+T +F W++EL+ PNI++ L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
AV ++ +++A+ SL FMETSA + NV F + ++ K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 154 bits (390), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 108/163 (66%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+G+S VGKS+L+ RF K +F+ +STIG F T+++ +D+ VK +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
RY ++ YYRGA A++VYD+T +F W++EL+ PNI++ L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
AV ++ +++A+ SL FMETSA + NV F + ++ K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 110/155 (70%), Gaps = 1/155 (0%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
+ K++LIGDSGVGKS LL RF +++FN +TIG++F +++ I+ K VK Q+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132
ER+R IT+AYYRGA+G +LVYDVT TF N+ +W + + EH + ++L+GNK+D+
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 126
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
V V+ + G+A A++ + F+E+SA + NV F
Sbjct: 127 RV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 160
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 108/163 (66%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+G+S VGKS+L+ RF K +F+ +STIG F T+++ +D+ VK +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
RY ++ YYRGA A++VYD+T +F W++EL+ PNI++ L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
AV ++ +++A+ SL FMETSA + NV F + ++ K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 153 bits (387), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
D + K++LIGDSGVGKS LL RF +++FN +TIG++F +++ I+ K VK QIWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
GQER+R IT+AYYRGA G +LVYD+T TF N+ +W + + EH + ++L+GNK+D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
V V+ + G+A A++ + F+E+SA + NV F
Sbjct: 121 ETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 153 bits (386), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 107/163 (65%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+G+S VGKS+L+ RF K +F+ +STIG F T+++ +D+ VK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
RY ++ YYRGA A++VYD+T +F W++EL+ PNI++ L GNK DL +
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
AV ++ +++A+ SL F ETSA + NV F + ++ K
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 153 bits (386), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
D + K++LIGDSGVGKS LL RF +++FN +TIG++F +++ I+ K VK Q+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
GQER+R IT+AYYRGA G +LVYDVT TF N+ +W + + EH + ++L+GNK+D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
V V+ + G+A A++ + F+E+SA + NV F
Sbjct: 121 ETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 107/163 (65%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+G+S VGKS+L+ RF K +F+ +STIG F T+++ +D+ VK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
RY ++ YYRGA A++VYD+T +F W++EL+ PNI++ L GNK DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
AV ++ +++A+ SL FMETSA + NV F + ++ K
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 105/161 (65%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K+ L+GD+GVGKS+++ RF ++ F+ TIG F T++++ N++ K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
R+RA+ YYRG+ A++VYD+T+ TF + W+RELR+H P+I+V + GNK DL +
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V D K +A+ F+ETSA +A N+ F E+ +I
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 104/161 (64%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K+ L+GD+GVGKS+++ RF ++ F+ TIG F T++++ N++ K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
R+RA+ YYRG+ A++VYD+T+ TF + W+RELR+H P+I+V + GNK DL +
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V D K +A+ F+ETSA +A N+ F E+ +I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 105/165 (63%)
Query: 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
+DY+FKL++IG+S VGK++ L R+ + F ST+G++F +++ K VK QIWDT
Sbjct: 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 79
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
AGQERYR IT+AYYRGA+G +L+YD+T +F V W +++ ++ N V+L+GNK D
Sbjct: 80 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 139
Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
+ V TE G+ AEQ F E SA + +V AF ++ I
Sbjct: 140 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 146 bits (369), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 107/165 (64%)
Query: 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
+DY+FK+++IG+S VGK++ L R+ + F ST+G++F +++ ++K +K QIWDT
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
AGQERYR IT+AYYRGA+G +L+YD+T +F V W +++ ++ N V+L+GNK D
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
+ VS+E G+ A+ F E SA D NV+ F ++ I
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 103/161 (63%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K+ L+GD+GVGKS+++ RF ++ F+ TIG F T+++ N++ K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
R+ ++ YYRG+ A++VYD+T+ +F + +W++EL+EH NI++ + GNK DL +
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V +D K +AE +ETSA +A N+E F + QI
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 103/164 (62%)
Query: 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
DY+FKL+LIG+S VGK++ L R+ + F ST+G++F +++ +K +K QIWDTA
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
GQERYR IT+AYYRGA+G LL+YD+ +F V W +++ ++ N V+L+GNK DL
Sbjct: 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V EDG+ A+ F E SA + NV+ F ++ I
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 144 bits (363), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 113/187 (60%), Gaps = 2/187 (1%)
Query: 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
DE+ K+++IG+SGVGKS+LL RFT + F+ E +TIGV+F +++ +D K I
Sbjct: 9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 68
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIV-MLIG 125
WDTAGQER+R +T +YYRGA G +LVYDVTR TF + WL EL + N IV L+G
Sbjct: 69 WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVG 128
Query: 126 NKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEA 185
NK D + V +G FA + S F+E SA V+ AF E++ +I + E
Sbjct: 129 NKID-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN 187
Query: 186 GSNGTAS 192
++G +S
Sbjct: 188 QNSGPSS 194
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 109/167 (65%), Gaps = 1/167 (0%)
Query: 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
D+ ++++IG GVGK++L+ RFT + F KST+GV+F +++ + K ++ QIWDTA
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
GQER+ +ITSAYYR A G +LVYD+T+ TF ++ +W++ + ++ + ++L+GNK D
Sbjct: 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 131 RHLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQIYK 176
++ + G+ FA+Q + F E SA D NV+ F +++ I K
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 102/165 (61%)
Query: 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT 69
+DY FK+++IG+S VGK++ L R+ + F ST+G++F +++ ++K +K QIWDT
Sbjct: 5 FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129
AG ERYR IT+AYYRGA G +L YD+T +F V W +++ ++ N V+L+GNK D
Sbjct: 65 AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
VS+E G+ A+ F E SA D NV+ F ++ I
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 107/167 (64%), Gaps = 6/167 (3%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
LFK++L+GD GVGKS+L++R+ N+F+ + TIGVEF + L +D V QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKT 128
ER+R++ + +YRG+ LL + V +FQN+ W +E + D + +++GNKT
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 129 DLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFTEVLTQI 174
D++ VSTE+ +A+ + Y + ETSA D+TNV AF E + +I
Sbjct: 131 DIKER-QVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 108/157 (68%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLV +G+ VGK++L++RF + F+ ++TIG++F ++++ ++++ V+ Q+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
R+R++ +Y R + A++VYD+T +FQ +W+ ++R ++I+ML+GNKTDL
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
++ E+G+ A++ S+ F+ETSA NV+ F V
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRV 159
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 108/157 (68%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLV +G+ VGK++L++RF + F+ ++TIG++F ++++ ++++ V+ Q+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
R+R++ +Y R + A++VYD+T +F +W+ ++R ++I+ML+GNKTDL
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
VSTE+G+ A++ ++ F+ETSA NV+ F V
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 108/157 (68%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLV +G+ VGK++L++RF + F+ ++TIG++F ++++ ++++ ++ Q+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
R+R++ +Y R + A++VYD+T +FQ +W+ ++R ++I+ML+GNKTDL
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
VS E+G+ A++ ++ F+ETSA NV+ F V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 108/157 (68%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLV +G+ VGK++L++RF + F+ ++TIG++F ++++ ++++ V+ Q+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
R+R++ +Y R + A++VYD+T +FQ +W+ ++R ++I+ML+GNKTDL
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
VS E+G+ A++ ++ F+ETSA NV+ F V
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 83/115 (72%)
Query: 16 LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY 75
L+LIGDSGVGKS LL RF + + STIGV+F R++ +D K +K QIWDTAGQER+
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 76 RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
R ITS+YYRGA G ++VYDVT +F NV +WL+E+ + N+ +L+GNK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 104/167 (62%), Gaps = 6/167 (3%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
LFK++L+GD GVGKS+L++R+ N+F+ + TIGVEF + L +D V QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKT 128
ER+R++ + +YRG+ LL + V +FQN+ W +E + D + +++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 129 DLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFTEVLTQI 174
D+ VSTE+ +A+ Y + ETSA DATNV AF E + ++
Sbjct: 127 DISER-QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 104/167 (62%), Gaps = 6/167 (3%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
LFK++L+GD GVGKS+L++R+ N+F+ + TIGVEF + L +D V QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKT 128
ER+R++ + +YRG+ LL + V +FQN+ W +E + D + +++GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 129 DLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFTEVLTQI 174
D+ VSTE+ +A+ Y + ETSA DATNV AF E + ++
Sbjct: 129 DISER-QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 107/157 (68%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLV +G+ VGK++L++RF + F+ ++TIG++F ++++ ++++ ++ Q+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
R+R++ +Y R + A++VYD+T +FQ +W+ ++R ++I+ML+GNKTDL
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
VS E+G+ A++ ++ F+ETSA NV+ F V
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 96/156 (61%), Gaps = 3/156 (1%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLVL+G++ VGKS+++ RF N+F + TIG F T+ + I+ VK +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134
+ ++ YYR A AL+VYDVT+ +F W++EL E +II+ L+GNK D
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 135 A---VSTEDGKAFAEQESLYFMETSALDATNVENAF 167
V+ E+G+ AE++ L F ETSA NV + F
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 133 bits (334), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 107/157 (68%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLV +G+ VGK++L++RF + F+ ++TIG++F ++++ ++++ V+ Q+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
R+R++ +Y R + A++VYD+T +FQ +W+ ++R ++I+ML+GNKTDL
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
VS E+G+ A++ ++ F+ETSA NV+ F V
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 173
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 133 bits (334), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 107/157 (68%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLV +G+ VGK++L++RF + F+ ++TIG++F ++++ ++++ V+ Q+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
R+R++ +Y R + A++VYD+T +FQ +W+ ++R ++I+ML+GNKTDL
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170
VS E+G+ A++ ++ F+ETSA NV+ F V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 107/170 (62%), Gaps = 6/170 (3%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
L K++L+GD GVGKS+L++R+ N+F+ ++ TIGVEF R L +D + V QIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKT 128
ER++++ + +YRGA LL + V +F+N+G W +E + D + +++GNK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 129 DLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFTEVLTQIYKI 177
D + V+TE+ + + + Y ++ETSA D TNV AF E + Q+ +
Sbjct: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAV 175
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 113/191 (59%), Gaps = 15/191 (7%)
Query: 3 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK-- 60
G D +YDYL KL+ +GDSGVGK+ L R+T N+FN + +T+G++F + + D +
Sbjct: 1 GSMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 61 --------VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR 112
V Q+WDTAG ER+R++T+A++R A+G LL++D+T +F NV W+ +L+
Sbjct: 61 DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ 120
Query: 113 EHT---DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE 169
+ +P+I+ LIGNK DL V+ + AE+ + + ETSA NVE +
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 170 VLTQIYKIVSK 180
+L I K + K
Sbjct: 179 LLDLIMKRMEK 189
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 113/191 (59%), Gaps = 15/191 (7%)
Query: 3 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK-- 60
G D +YDYL KL+ +GDSGVGK+ L R+T N+FN + +T+G++F + + D +
Sbjct: 1 GSMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 61 --------VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR 112
V Q+WDTAG ER+R++T+A++R A+G LL++D+T +F NV W+ +L+
Sbjct: 61 DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ 120
Query: 113 EHT---DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE 169
+ +P+I+ LIGNK DL V+ + AE+ + + ETSA NVE +
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 170 VLTQIYKIVSK 180
+L I K + K
Sbjct: 179 LLDLIMKRMEK 189
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 107/161 (66%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV +G+ VGK+++++RF + F+ +STIG++F +++L +D V+ Q+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
R+R++ +Y R + A++VYD+T +F+N +W++++ ++I+ L+GNKTDL L
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V+ E+G A++ + F ETSA N++ F + +++
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 115/187 (61%), Gaps = 15/187 (8%)
Query: 3 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEF-----ATRSLRI 57
G D +YDYL K + +GDSGVGK+++L ++T +FN + +T+G++F R+
Sbjct: 1 GSMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGP 60
Query: 58 DNKV-----VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR 112
D V + Q+WDTAG ER+R++T+A++R A+G LL++D+T +F NV W+ +L+
Sbjct: 61 DGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQ 120
Query: 113 EHT---DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE 169
H +P+I+ L GNK+DL AV E+ + AE+ + + ETSA + TN+ +A
Sbjct: 121 MHAYSENPDIV--LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEM 178
Query: 170 VLTQIYK 176
+L I K
Sbjct: 179 LLDLIMK 185
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 130 bits (326), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 110/181 (60%), Gaps = 15/181 (8%)
Query: 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK-------- 60
+YDYL KL+ +GDSGVGK+ L R+T N+FN + +T+G++F + + + +
Sbjct: 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 61 --VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHT--- 115
V Q+WDTAGQER+R++T+A++R A+G LL++D+T +F NV W+ +L+ +
Sbjct: 81 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 140
Query: 116 DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY 175
+P+I+ LIGNK DL V+ + A++ + + ETSA NVE A +L I
Sbjct: 141 NPDIV--LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 198
Query: 176 K 176
K
Sbjct: 199 K 199
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 130 bits (326), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 99/163 (60%)
Query: 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71
Y FK+VL+G+ VGK++L+ R+ +N+FN + +T+G F T+ L I K V IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131
QER+ A+ YYR + GA+LVYD+T +FQ V W++ELR+ I + ++GNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
VS ++ +++AE TSA +E F ++ ++
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
+FK+++IGDS VGK+ L RF F +++TIGV+F R++ ID + +K Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 73 ERYR-AITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPN-IIVMLIGNKTDL 130
ER+R ++ YYR + VYD+T A+F ++ W+ E ++H N I +L+GNK DL
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVS 179
R + V T+ + FA+ S+ ETSA + + ++ +T +K+ S
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 113/204 (55%), Gaps = 19/204 (9%)
Query: 3 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK-- 60
G D +YDYL KL+ +GDSGVGK+ L R+T N+FN + +T+G++F + + D +
Sbjct: 1 GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 61 --------VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR 112
V Q+WDTAG ER+R++T+A++R A G LL +D+T +F NV W +L+
Sbjct: 61 DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ 120
Query: 113 EHT---DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE 169
+ +P+I+ LIGNK DL V+ + AE+ + + ETSA NVE +
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 170 VLTQIY----KIVSKRAVEAGSNG 189
+L I K V K V NG
Sbjct: 179 LLDLIXKRXEKCVEKTQVPDTVNG 202
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 109/191 (57%), Gaps = 15/191 (7%)
Query: 3 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK-- 60
G D +YDYL KL+ +GDSGVGK+ L R+T N+FN + +T+G++F + + D +
Sbjct: 1 GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 61 --------VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR 112
V Q+WDTAG ER+R++T+A++R A G LL +D+T +F NV W +L+
Sbjct: 61 DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ 120
Query: 113 EHT---DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE 169
+ +P+I+ LIGNK DL V+ + AE+ + + ETSA NVE +
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 170 VLTQIYKIVSK 180
+L I K K
Sbjct: 179 LLDLIXKRXEK 189
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 107/163 (65%), Gaps = 6/163 (3%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
L K++++GDSGVGK++L++++ +F+ + K+TIG +F T+ + +D+++V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP----NIIVMLIGNKT 128
ER++++ A+YRGA +LV+DVT TF+ + W E P N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEV 170
DL + V+T+ +A+ + ++ + ETSA +A NVE AF +
Sbjct: 128 DLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 97/169 (57%), Gaps = 6/169 (3%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+K+VL GD+ VGKS+ L R KNEF +T+GV+F ++L +D + Q+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
R+R+I +Y+R A G LL+YDVT +F N+ W+ + + + +ML+GNK D+R
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 134 VA------VSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
A V G+ A F ETSA D +N+ A + ++ K
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 99/169 (58%)
Query: 6 PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQ 65
P Y FK+VL+G+ VGK++L+ R+ +N+FN + +T+ F T+ L I K V
Sbjct: 13 PRGSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLA 72
Query: 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIG 125
IWDTAGQER+ A+ YYR + GA+LVYD+T +FQ V W++ELR+ I + ++G
Sbjct: 73 IWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG 132
Query: 126 NKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
NK DL VS ++ +++AE TSA +E F ++ ++
Sbjct: 133 NKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
+FK+++IGDS VGK+ L RF F +++TIGV+F R++ ID + +K Q+WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 73 ERYR-AITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPN-IIVMLIGNKTDL 130
ER+R ++ YYR + VYD T A+F ++ W+ E ++H N I +L+GNK DL
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVS 179
R + V T+ + FA+ S ETSA + + ++ T +K+ S
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLKS 197
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 107/163 (65%), Gaps = 6/163 (3%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
L K++++GDSGVGK++L++++ +F+ + K+TIG +F T+ + +D+++V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP----NIIVMLIGNKT 128
ER++++ A+YRGA +LV+DVT TF+ + W E P N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEV 170
DL + V+T+ +A+ + ++ + ETSA +A NVE AF +
Sbjct: 128 DLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 126 bits (317), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 98/163 (60%)
Query: 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71
Y FK+VL+G+ VGK++L+ R+ +N+FN + +T+ F T+ L I K V IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131
QER+ A+ YYR + GA+LVYD+T +FQ V W++ELR+ I + ++GNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
VS ++ +++AE TSA +E F ++ ++
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 106/163 (65%), Gaps = 6/163 (3%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
L K++++GDSGVGK++L++++ +F+ + K+TIG +F T+ + +D+++V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP----NIIVMLIGNKT 128
ER++++ A+YRGA +LV+DVT TF+ + W E P N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEV 170
D + V+T+ +A+ + ++ + ETSA +A NVE AF +
Sbjct: 128 DFENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 106/163 (65%), Gaps = 6/163 (3%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
L K++++GDSGVGK++L++++ +F+ + K+TIG +F T+ + +D+++V QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP----NIIVMLIGNKT 128
ER++++ A+YRGA +LV+DVT TF+ + W E P N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEV 170
DL + V+T+ +A+ + ++ + ETSA +A NVE AF +
Sbjct: 128 DLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 116 bits (291), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 103/165 (62%), Gaps = 7/165 (4%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID-NKVVKAQIWDTAG 71
+ K++++GDSGVGK++L+ R+ ++++ + K+TIG +F T+ + +D +KV Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPN----IIVMLIGNK 127
QER++++ A+YRGA +LVYDVT ++F+N+ W E H + N +++GNK
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 128 TDLRHLVA-VSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEV 170
D VS + + A+ + TSA +A NV+ AF E+
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 88/154 (57%), Gaps = 1/154 (0%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K+V++G+ VGKS+++ R+ K F + K TIGV+F R ++++++ V+ +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
+ AIT AYYRGA +LV+ T +F+ + W RE +I L+ NK DL
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSW-REKVVAEVGDIPTALVQNKIDLLDD 124
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
+ E+ + A++ L F TS + NV F
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 103 bits (257), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 40/200 (20%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV------------ 61
+K VL+G+S VGKS+++ R TK+ F+ + +TIG F T + +++
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 62 -------------------------VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT 96
+K IWDTAGQERY +I YYRGA A++V+D++
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 97 RHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETS 156
T W+ +L+ N I++L+ NK D ++ V + + +A+ +L F++TS
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 157 ALDATNVENAFTEVLTQIYK 176
A TN++N F + +IYK
Sbjct: 185 AKTGTNIKNIFYMLAEEIYK 204
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+GD G GK+ + R EF + +T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
+Y + YY A A++++DVT T++NV W R+L + NI ++L GNK D+ R
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
+ A S F +++L + + SA N E F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+GD G GK+ + R EF + +T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
++ + YY A A++++DVT T++NV W R+L + NI ++L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
+ A S F +++L + + SA N E F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+GD G GK+ + R EF + +T+GVE + +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
++ + YY A A++++DVT T++NV W R+L + NI ++L GNK D+ R
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 134
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
+ A S F +++L + + SA N E F
Sbjct: 135 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 166
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+GD G GK+ + R EF + +T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
++ + YY A A++++DVT T++NV W R+L + NI ++L GNK D+ R
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
+ A S F +++L + + SA N E F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+GD G GK+ + R EF + +T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
++ + YY A A++++DVT T++NV W R+L + NI ++L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
+ A S F +++L + + SA N E F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+GD G GK+ + R EF + T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
++ + YY A A++++DVT T++NV W R+L + NI ++L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
+ A S F +++L + + SA N E F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+GD G GK+ + R EF + +T+GVE + +K +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
++ + YY A A++++DVT T++NV W R+L + NI ++L GNK D+ R
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 122
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
+ A S F +++L + + SA N E F
Sbjct: 123 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 154
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+GD G GK+ + R EF + +T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
++ + YY A A++++DVT T++NV W R+L + NI ++L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
+ A S F +++L + + SA N E F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+GD G GK+ + R EF + T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
++ + YY A A++++DVT T++NV W R+L + NI ++L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
+ A S F +++L + + SA N E F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 3/176 (1%)
Query: 1 MAGYKPDEEYDY-LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDN 59
MA KP + L K++++G GVGKS L +F +EF +E + + + +D
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDG 59
Query: 60 KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPN 118
+ V+ I DTAGQE Y AI Y+R G L V+ +T +F + + LR D N
Sbjct: 60 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119
Query: 119 IIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
+ +L+GNK+DL VS E+ K AEQ ++ ++ETSA NV+ F +++ +I
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+GD G GK+ + R EF + +T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
++ + YY A A++ +DVT T++NV W R+L + NI ++L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
+ A S F +++L + + SA N E F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 2/163 (1%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
L K++++G GVGKS L +F +EF +E + + + +D + V+ I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 76
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLR 131
E Y AI Y+R G L V+ +T +F + + LR D N+ +L+GNK+DL
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
VS E+ K AEQ ++ ++ETSA NV+ F +++ +I
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 2/163 (1%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
L K++++G GVGKS L +F +EF +E + + + +D + V+ I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 64
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLR 131
E Y AI Y+R G L V+ +T +F + + LR D N+ +L+GNK+DL
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
VS E+ K AEQ ++ ++ETSA NV+ F +++ +I
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+GD G GK+ + R EF + +T+GVE + +K +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
++ + YY A A++++DVT T++NV W R+L + NI ++L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
+ A S F +++L + + SA N E F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+GD G GK+ + R EF + +T+GVE + +K +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
++ + YY A A++++DVT T++NV W R+L + NI ++L GNK D+ R
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 125
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
+ A S F +++L + + SA N E F
Sbjct: 126 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 157
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+GD G GK+ + R EF + +T+GVE + +K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
++ + YY A A++++DVT T++NV W R+L + NI ++L GNK D+ R
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 131
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
+ A S F +++L + + SA N E F
Sbjct: 132 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 163
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+GD G GK+ + R E + +T+GVE + +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
++ + YY A A++++DVT T++NV W R+L + NI ++L GNK D+ R
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 134
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
+ A S F +++L + + SA N E F
Sbjct: 135 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 166
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 83/155 (53%), Gaps = 5/155 (3%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+GD G GK+ + R EF + +TIGVE S + +K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133
++ + YY A A++++DVT T++NV W R+L + NI ++L GNK D++
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKER 131
Query: 134 -VAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
V T F +++L + + SA N E F
Sbjct: 132 KVKAKT---ITFHRKKNLQYYDISAKSNYNFEKPF 163
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 2/163 (1%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
L K++++G GVGKS L +F +EF +E + + + +D + V+ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 62
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLR 131
E Y AI Y+R G L V+ +T +F + + LR D N+ +L+GNK+DL
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
VS E+ K A+Q ++ ++ETSA NV+ F +++ +I
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+GD G GK+ + R EF + +TIGVE S + +K +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
++ + YY A A++++DVT T++NV W R+L + NI ++L GNK D+ R
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKER 123
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
+ A + F +++L + + SA N E F
Sbjct: 124 KVKAKTI----TFHRKKNLQYYDISAKSNYNFEKPF 155
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
FKLVL+GD G GK+ + R EF + +TIGVE S + +K +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--R 131
++ + YY A A++++DVT T++NV W R+L + NI ++L GNK D+ R
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKER 124
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
+ A + F +++L + + SA N E F
Sbjct: 125 KVKAKTI----TFHRKKNLQYYDISAKSNYNFEKPF 156
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 4/168 (2%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV-VKAQIWDTAGQ 72
K+V++GD GK++L + F + F + K TIG++F R + + + V QIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRW---LRELREHTDPNIIVMLIGNKTD 129
+ Y GA G LLVYD+T + +F+N+ W ++++ E ++ +V L+GNK D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 130 LRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
L H+ + E F ++ SA +V F +V +I I
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 2/163 (1%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
L K++++G GVGKS L +F +EF +E + + + +D + V+ I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGL 64
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLR 131
E Y AI Y+R G L V+ +T +F + + LR D N+ +L+GNK+DL
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
VS E+ K AEQ ++ ++ETSA NV+ F +++ +I
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 1/156 (0%)
Query: 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIG-VEFATRSLRIDNKVVKAQI 66
E + +K+ LIGD GVGK+ ++R F +T+G V L V+K +
Sbjct: 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNV 65
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGN 126
WDTAGQE+ + YY GA GA+L +DVT T QN+ RW++E + +++ N
Sbjct: 66 WDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCAN 125
Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATN 162
K D+++ +S + + ++ + E SA A N
Sbjct: 126 KIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
L K++++G GVGKS L +F +EF +E + + + +D + V+ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGL 65
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVML-IGNKTDL 130
E Y AI Y+R G LLV+ +T H +F + + LR + + I +L +GNK+DL
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V E+ ++ AE+ + ++ETSA NV+ F +++ +I
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
L K++++G GVGKS L +F +EF +E + + + +D + V+ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGL 61
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVML-IGNKTDL 130
E Y AI Y+R G LLV+ +T H +F + + LR + + I +L +GNK+DL
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V E+ ++ AE+ + ++ETSA NV+ F +++ +I
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 64
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y +L+ + + A+F+NV +W E+R H PN ++L+G K DLR
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 123
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ ++ ++E SAL ++ F E + +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y +L+ + + A+F+NV +W E+R H PN ++L+G K DLR
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ ++ ++E SAL ++ F E + +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y +L+ + + A+F+NV +W E+R H PN ++L+G K DLR
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 125
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ ++ ++E SAL ++ F E + +
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 180
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y +L+ + + A+F+NV +W E+R H PN ++L+G K DLR
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ ++ ++E SAL ++ F E + +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 12/182 (6%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
K V +GD VGK+ +L +T N+F + T+ F+ ++ +D ++V +WDTAGQ
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQ 67
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR 131
E Y + YRGA +L + + A+++NV +W+ ELR PN+ ++L+G K DLR
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 126
Query: 132 --------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQIYKIVSKRA 182
H +++ G+ +Q + ++E S+ NV+ F + + + ++
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 186
Query: 183 VE 184
V
Sbjct: 187 VP 188
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+F+NV +W E+R H PN ++L+G K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQIYK 176
L ++ G A A++ ++ ++E SAL ++ F E + + K
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D+K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+++NV +W E+R H P+ ++L+G K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVL 171
L ++ G A A++ +S+ ++E SAL ++ F E +
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 173
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 88/168 (52%), Gaps = 6/168 (3%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KL + G +GVGKS L+ RF F E T+ + ++ ID++VV +I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRHL 133
+ R G +LVYD+T +F+ V L E P N+ ++L+GNK DL H
Sbjct: 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 147
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 181
VSTE+G+ A + + F E SA E TE+ ++ + V +R
Sbjct: 148 RQVSTEEGEKLATELACAFYECSACTG---EGNITEIFYELCREVRRR 192
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+F+NV +W E+R H PN ++L+G K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ ++ ++E SAL ++ F E + +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+F+NV +W E+R H PN ++L+G K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ ++ ++E SAL ++ F E + +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D+K V +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 68
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+++NV +W E+R H P+ ++L+G K DLR
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 127
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ +S+ ++E SAL ++ F E + +
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 182
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+F+NV +W E+R H PN ++L+G K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ ++ ++E SAL ++ F E + +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F+ E T+ ++ ++ +D K V +WDTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 72
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+F+NV +W E+R H PN ++L+G K DLR
Sbjct: 73 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 131
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ ++ ++E SAL ++ F E + +
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 186
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D+K V +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 69
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+++NV +W E+R H P+ ++L+G K DLR
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 128
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ +S+ ++E SAL ++ F E + +
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 183
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+F+NV +W E+R H PN ++L+G K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ ++ ++E SAL ++ F E + +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Query: 26 KSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRG 85
KS L +F ++ F + TI + T+ ID++ + I DTAGQE + A+ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 86 AVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAF 144
G LLV+ VT +F+ + ++ R+ LR ++LIGNK DL H V+ E+G+
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 145 AEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
A Q + +ME SA NV+ AF E++ I K
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF 169
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+F+NV +W E+R H PN ++L+G K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ ++ ++E SAL ++ F E + +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 69
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+F+NV +W E+R H PN ++L+G K DLR
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 128
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ ++ ++E SAL ++ F E + +
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 183
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 89
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+F+NV +W E+R H PN ++L+G K DLR
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ ++ ++E SAL ++ F E + +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 81
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+F+NV +W E+R H PN ++L+G K DLR
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 140
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ ++ ++E SAL ++ F E + +
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 195
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+F+NV +W E+R H P+ ++L+G K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A E S+ ++E SAL ++ F E + +
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+F+NV +W E+R H P+ ++L+G K DLR
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A E S+ ++E SAL ++ F E + +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+F+NV +W E+R H P+ ++L+G K DLR
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A E S+ ++E SAL ++ F E + +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 5/164 (3%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L +F + F E TI + + + +D + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLR 131
++ A+ Y + G LVY +T +TF ++ + LRE LR ++ ++L+GNK DL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 132 HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
V E G+ A Q + F+E+SA NV F +++ QI
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
K V +GD VGK+ +L +T N F + T+ F+ ++ +D V +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGNTVNLGLWDTAGQ 64
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR 131
E Y + YRGA +L + + A+++NV +W+ ELR H P + ++L+G K DLR
Sbjct: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
Query: 132 H----------LVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAF 167
V ++T G+ + S ++E S+ NV+ F
Sbjct: 124 DDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+F+NV +W E+R H PN ++L+G K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ ++ ++E SAL ++ F E + +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+F+NV +W E+R H PN ++L+G K DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ ++ ++E SAL ++ F E + +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N E T+ ++ ++ +D K V +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 89
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+F+NV +W E+R H PN ++L+G K DLR
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ ++ ++E SAL ++ F E + +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K VL+GD VGK++L+ +T N + E T F+ + +D + V+ Q+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA-VVSVDGRPVRLQLCDTAGQDE 80
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHL 133
+ + Y LL + V ++FQNV +W+ E+R H P ++L+G ++DLR
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRED 139
Query: 134 V------------AVSTEDGKAFAEQ-ESLYFMETSALDATNVENAF 167
V V E K AE+ ++ ++E SAL N++ F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 5/164 (3%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L +F + F + TI + + + +D + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLR 131
++ A+ Y + G LVY +T +TF ++ + LRE LR ++ ++L+GNK DL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTDDVPMILVGNKCDLE 121
Query: 132 HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
V E G+ A Q + F+E+SA NV F +++ QI
Sbjct: 122 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 3/164 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ + +++ D ++ ++L+GNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
V T+ + A + F+ETSA V++AF ++ +I K
Sbjct: 124 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 3/164 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ + +++ D ++ ++L+GNK+DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
V T+ + A + F+ETSA V++AF ++ +I K
Sbjct: 124 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+F+NV +W E+R H PN ++L+G K DLR
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 124
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ ++ ++E SAL ++ F E + +
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 179
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 89
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + + A+F+NV +W E+R H PN ++L+G K DLR
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 132 -----------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
L ++ G A A++ ++ ++E SAL ++ F E + +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 5/164 (3%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L +F + F + TI + + + +D + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLR 131
++ A+ Y + G LVY +T +TF ++ + LRE LR ++ ++L+GNK DL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 132 HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
V E G+ A Q + F+E+SA NV F +++ QI
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 5/164 (3%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L +F + F + TI + + + +D + +I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 64
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLR 131
++ A+ Y + G LVY +T +TF ++ + LRE LR ++ ++L+GNK DL
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTDDVPMILVGNKCDLE 123
Query: 132 HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
V E G+ A Q + F+E+SA NV F +++ QI
Sbjct: 124 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 35/194 (18%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 64
Query: 74 RYRAITSAYYRGAVGA-------------------LLVYDVTRHATFQNV-GRWLRELRE 113
Y + Y VG L+ + + A+F+NV +W E+R
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 114 HTDPNIIVMLIGNKTDLR------------HLVAVSTEDGKAFAEQ-ESLYFMETSALDA 160
H PN ++L+G K DLR L ++ G A A++ ++ ++E SAL
Sbjct: 125 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 161 TNVENAFTEVLTQI 174
++ F E + +
Sbjct: 184 RGLKTVFDEAIRAV 197
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 16/182 (8%)
Query: 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
DE L K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGL 207
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIG 125
WDTAG E Y + Y L+ + + A+F +V +W E+R H PN ++L+G
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVG 266
Query: 126 NKTDLR------------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLT 172
K DLR L ++ G A A++ ++ ++E SAL ++ F E +
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 326
Query: 173 QI 174
+
Sbjct: 327 AV 328
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 16/182 (8%)
Query: 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
DE L K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGL 207
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIG 125
WDTAG E Y + Y L+ + + A+F +V +W E+R H PN ++L+G
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVG 266
Query: 126 NKTDLR------------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLT 172
K DLR L ++ G A A++ ++ ++E SAL ++ F E +
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 326
Query: 173 QI 174
+
Sbjct: 327 AV 328
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 16/182 (8%)
Query: 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI 66
DE L K V++GD VGK+ LL +T N F E T+ ++ ++ +D K V +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGL 207
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIG 125
WDTAG E Y + Y L+ + + A+F +V +W E+R H PN ++L+G
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVG 266
Query: 126 NKTDLR------------HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLT 172
K DLR L ++ G A A++ ++ ++E SAL ++ F E +
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 326
Query: 173 QI 174
+
Sbjct: 327 AV 328
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
K V +GD VGK+ +L +T N F + T+ F+ ++ +D V +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR 131
E Y + YRGA LL + + A+++N+ +WL EL+ H P I ++L+G K DLR
Sbjct: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLR 123
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL F+K+EF T+ E + +D K V+ +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
Y + Y L+ + V + +N+ +W+ E++ H PN+ ++L+ NK DLR
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSD 144
Query: 132 -HL---------VAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
H+ V T+DG+A A + Y ++E SA V F
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K+VL+GD G GK++LL F F ES + E +L++ K V IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRH- 132
Y + +Y A LL +DVT +F N+ RW E+ H + ++++G KTDLR
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRKD 153
Query: 133 -----------LVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTE 169
L V+ G+ A ++ ++E SA NV F E
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
K V +GD VGK+ LL +T N F + T+ F+ ++ ++ V +WDTAGQ
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQ 66
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR 131
E Y + YRGA +L + + A+++NV +W+ EL+ H P + ++L+G K DLR
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLR 125
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL F+K++F T+ E + +D K V+ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
Y + Y L+ + + + +N+ +W E++ H PN+ ++L+GNK DLR
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDLRQD 144
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
V +E+G+ A + S + ++E SA V F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL F+K++F T+ E + +D K V+ +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
Y + Y L+ + + + +N+ +W E++ H PN+ ++L+GNK DLR+
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 128
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
V E+G+ A + + +ME SA V F
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL F+K++F T+ E + +D K V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
Y + Y L+ + + + +N+ +W E++ H PN+ ++L+GNK DLR+
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
V E+G+ A + + +ME SA V F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL F+K++F T+ E + +D K V+ +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
Y + Y L+ + + + +N+ +W E++ H PN+ ++L+GNK DLR+
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
V E+G+ A + + +ME SA V F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
+ K V++GD VGK+ LL + + F E T+ +A S+ + K ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQ 76
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR 131
E Y + Y L+ + V A+FQNV W+ EL+E+ PN+ +LIG + DLR
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 132 HLV------------AVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 174
+ E G+ A++ + ++E SAL ++ F E + I
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL F+K++F T+ E + +D K V+ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
Y + Y L+ + + + +N+ +W E++ H PN+ ++L+GNK DLR
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 144
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
V +E+G+ A + S + ++E SA V F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL F+K++F T+ E + +D K V+ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
Y + Y L+ + + + +N+ +W E++ H PN+ ++L+GNK DLR+
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
V E+G+ A + + +ME SA V F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL F+K++F T+ E + +D K V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
Y + Y L+ + + + +N+ +W E++ H PN+ ++L+GNK DLR+
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
V E+G+ A + + +ME SA V F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL F+K++F T+ E + +D K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
Y + Y L+ + + + +N+ +W E++ H PN+ ++L+GNK DLR+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
V E+G+ A + + +ME SA V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL F+K++F T+ E + +D K V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
Y + Y L+ + + + +N+ +W E++ H PN+ ++L+GNK DLR+
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
V E+G+ A + + +ME SA V F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 86/164 (52%), Gaps = 2/164 (1%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K+V++G VGK++L +F + EF+ T+ + ++ + + + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE-HTDPNIIVMLIGNKTDLRHL 133
Y + ++ G G +LVY VT +FQ + ++L E H + V+L+GNK DL
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 134 VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
V +GK AE FME+SA + + FT+V+ +I ++
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++GD GVGKS L +F + F E TI + + IDN+ + DTAGQE
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQE 77
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRH 132
+ A+ Y R G L+VY VT A+F++V R+ + LR + ++L+ NK DL H
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDAT-NVENAFTEVLTQI 174
L V+ + GK A + ++ ++ETSA D NV+ F +++ I
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL F+K++F T+ E + +D K V+ +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
Y + Y L+ + + + +N+ +W E++ H PN+ ++L+GNK DLR+
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
V E+G+ A + + +ME SA V F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++GD GVGKS L +F + F E TI + + IDN+ + DTAGQE
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAILDVLDTAGQE 77
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRH 132
+ A+ Y R G L+VY VT A+F++V R+ + LR + ++L+ NK DL H
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDAT-NVENAFTEVLTQI 174
L V+ + GK A + ++ ++ETSA D NV+ F +++ I
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 16/162 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K+V++GDS GK+ LL F K+ F T+ E T S ID + ++ +WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHL 133
Y + Y + L+ +D++R T +V +W E++E PN ++L+G K+DLR
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 147
Query: 134 VA------------VSTEDGKAFAEQ-ESLYFMETSALDATN 162
V+ VS + G A+Q + ++E SAL + N
Sbjct: 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 16/162 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K+V++GDS GK+ LL F K+ F T+ E T S ID + ++ +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHL 133
Y + Y + L+ +D++R T +V +W E++E PN ++L+G K+DLR
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126
Query: 134 VA------------VSTEDGKAFAEQ-ESLYFMETSALDATN 162
V+ VS + G A+Q + ++E SAL + N
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 16/162 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K+V++GDS GK+ LL F K+ F T+ E T S ID + ++ +WDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 83
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHL 133
Y + Y + L+ +D++R T +V +W E++E PN ++L+G K+DLR
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 142
Query: 134 VA------------VSTEDGKAFAEQ-ESLYFMETSALDATN 162
V+ VS + G A+Q + ++E SAL + N
Sbjct: 143 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++GD GVGKS L +F + F + TI + + IDN+ + DTAGQE
Sbjct: 14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQE 72
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRH 132
+ A+ Y R G L+VY VT A+F++V R+ + LR + ++L+ NK DL H
Sbjct: 73 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 132
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDAT-NVENAFTEVLTQI 174
L V+ + GK A + ++ ++ETSA D NV+ F +++ I
Sbjct: 133 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++GD GVGKS L +F + F + TI + + IDN+ + DTAGQE
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQE 77
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRH 132
+ A+ Y R G L+VY VT A+F++V R+ + LR + ++L+ NK DL H
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDAT-NVENAFTEVLTQI 174
L V+ + GK A + ++ ++ETSA D NV+ F +++ I
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL F+K++F T+ E + +D K V+ +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH 132
Y Y L+ + + + +N+ +W E++ H PN+ ++L+GNK DLR+
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRN 123
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL +K++F T+ E + +D K V+ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
Y + Y L+ + + + +N+ +W E++ H PN+ ++L+GNK DLR+
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
V E+G+ A + + +ME SA V F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL +K++F T+ E + +D K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
Y + Y L+ + + + +N+ +W E++ H PN+ ++L+GNK DLR+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
V E+G+ A + + +ME SA V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL +K++F T+ E + +D K V+ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
Y + Y L+ + + + +N+ +W E++ H PN+ ++L+GNK DLR+
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
V E+G+ A + + +ME SA V F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL +K++F T+ E + +D K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
Y + Y L+ + + + +N+ +W E++ H PN+ ++L+GNK DLR+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
V E+G+ A + + +ME SA V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL +K++F T+ E + +D K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
Y + Y L+ + + + +N+ +W E++ H PN+ ++L+GNK DLR+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
V E+G+ A + + +ME SA V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL +K++F T+ E + +D K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
Y + Y L+ + + + +N+ +W E++ H PN+ ++L+GNK DLR
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 124
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
V +E+G+ A + S + ++E SA V F
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 8/167 (4%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K+ ++G VGKS+L +F + +F TI F T+ + ++ + Q+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNV----GRWLRELREHTDPNIIVMLIGNKTDL 130
Y Y G +LVY VT +F+ + G+ L + + P +ML+GNK DL
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP---IMLVGNKKDL 118
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
+S E+GKA AE + F+E+SA + + F ++ + KI
Sbjct: 119 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKI 165
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 8/163 (4%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K+ ++G VGKS+L +F + +F + TI F T+ + ++ + Q+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNV----GRWLRELREHTDPNIIVMLIGNKTDL 130
Y Y G +LVY VT +F+ + G+ L + + P +ML+GNK DL
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP---IMLVGNKKDL 121
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ 173
+S E+GKA AE + F+E+SA + + F ++ +
Sbjct: 122 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 8/167 (4%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K+ ++G VGKS+L +F + +F TI F T+ + ++ + Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNV----GRWLRELREHTDPNIIVMLIGNKTDL 130
Y Y G +LVY VT +F+ + G+ L + + P +ML+GNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP---IMLVGNKKDL 123
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
+S E+GKA AE + F+E+SA + + F ++ + K+
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKM 170
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 8/167 (4%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K+ ++G VGKS+L +F + +F TI F T+ + ++ + Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNV----GRWLRELREHTDPNIIVMLIGNKTDL 130
Y Y G +LVY VT +F+ + G+ L + + P +ML+GNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP---IMLVGNKKDL 123
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177
+S E+GKA AE + F+E+SA + + F ++ + K+
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKL 170
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 81/151 (53%), Gaps = 4/151 (2%)
Query: 26 KSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRG 85
KS L +F F + TI +F + + +D+ +I DTAG E++ ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 86 AVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKA 143
G +LVY + +FQ++ + +R+ +R + V+L+GNK DL VS+ +G+A
Sbjct: 75 GQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA 133
Query: 144 FAEQESLYFMETSALDATNVENAFTEVLTQI 174
AE+ FMETSA T V+ F E++ Q+
Sbjct: 134 LAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 13/173 (7%)
Query: 15 KLVLIGDSGVGKSNLLSRFTK--NEFNLESKSTIGVEFATRSLRIDNKVVKAQIW--DTA 70
K+ ++G++ VGKS L+S FT ++F + T GVE + I + V +++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRW---LRELREHTDPNIIVMLIGNK 127
G + Y+ S Y+ G A+LV+DV+ +F++ W L+ R + + +L+ NK
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 128 TDL---RHLVAVSTEDGKAFAEQESLYFMETSA-LDATNVENAFTEVLTQIYK 176
TDL RH V + + +A +L F + SA + + F + T Y+
Sbjct: 142 TDLPPQRHQVRLDM--AQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL +K++F T+ E + +D K V+ +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
Y + Y L+ + + + +N+ +W E++ H PN+ ++L+GNK DLR+
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 133 -----------LVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 167
V E+G+ A + + +ME SA V F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFT-KNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71
L+++VL+GD GVGK++L S F K E +L + +G + R+L +D + + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ--LGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 72 QERYRAITS--AYYRGAVGALLVYDVTRHATFQNVGRWLRELRE-HTDPNIIVMLIGNKT 128
E+ S + +G ++VY + +F++ +LR H ++ ++L+GNK
Sbjct: 62 AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
DL VS E+G+A A F+ETSA NV F
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 124
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 132
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 183
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 122
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 174
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 124
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 125
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 126
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 124
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAGQE
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKS-TIGVEFATRSLRIDNK---VVKAQIWDT 69
+++VLIG+ GVGKS L + F +++S +G + R+L +D + ++ +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70 AGQERY-----RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE-HTDPNIIVML 123
G+ + + AY L+VY +T A+F+ +LR +I ++L
Sbjct: 67 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 124 IGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
+GNK+DL VS +G+A A F+ETSA NV+ F ++ Q+
Sbjct: 120 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 7/166 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKS-TIGVEFATRSLRIDNK---VVKAQIWDT 69
+++VLIG+ GVGKS L + F +++S +G + R+L +D + ++ +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE-HTDPNIIVMLIGNKT 128
G+ + + + L+VY +T A+F+ +LR +I ++L+GNK+
Sbjct: 98 KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 155
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
DL VS +G+A A F+ETSA NV+ F ++ Q+
Sbjct: 156 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 2/152 (1%)
Query: 26 KSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRG 85
KS L +F ++ F + TI + T+ +D + I DTAGQE + A+ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 86 AVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAF 144
G LLV+ + +F VG+ + LR + V+L+GNK DL V + AF
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 145 AEQESLYFMETSALDATNVENAFTEVLTQIYK 176
+ + E SA NV+ AF +++ + K
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N+F E T+ +A ++ I + + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 3/164 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 5 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ + +++ D ++ ++L+GNK+DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
V T+ + A + F+ETSA V++AF ++ +I K
Sbjct: 124 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 3/164 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 5 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ + +++ D ++ ++L+GNK+DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
V T+ + A + F+ETSA V++AF ++ +I K
Sbjct: 124 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E + +A ++ I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 15/146 (10%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLVL+GD GK+ +L K+ + E+ E T L + + V+ +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 71
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQN-VGRWLRELREHTDPNIIVMLIGNKTDLR-- 131
Y + Y + LL +D++R T + + +W E+ ++ P+ V+LIG KTDLR
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTD 130
Query: 132 ----------HLVAVSTEDGKAFAEQ 147
+S E G A A+Q
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQ 156
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 15/146 (10%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLVL+GD GK+ +L K+ + E+ E T L + + V+ +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 70
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQN-VGRWLRELREHTDPNIIVMLIGNKTDLR-- 131
Y + Y + LL +D++R T + + +W E+ ++ P+ V+LIG KTDLR
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTD 129
Query: 132 ----------HLVAVSTEDGKAFAEQ 147
+S E G A A+Q
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQ 155
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 7/166 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLES-KSTIGVEFATRSLRIDNK---VVKAQIWDT 69
+++VLIG+ GVGKS L + F +++S +G + R+L +D + ++ +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE-HTDPNIIVMLIGNKT 128
G+ + + + L+VY +T A+F+ +LR +I ++L+GNK+
Sbjct: 67 KGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
DL VS +G+A A F+ETSA NV+ F ++ Q+
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 15/146 (10%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLVL+GD GK+ +L K+ + E+ E T L + + V+ +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 87
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQN-VGRWLRELREHTDPNIIVMLIGNKTDLR-- 131
Y + Y + LL +D++R T + + +W E+ ++ P+ V+LIG KTDLR
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTD 146
Query: 132 ----------HLVAVSTEDGKAFAEQ 147
+S E G A A+Q
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQ 172
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N+ E T+ +A ++ I + ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLES-KSTIGVEFATRSLRIDNK---VVKAQIWDT 69
+++VLIG+ GVGKS L + F +++S +G + R+L +D + ++ +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70 AGQERY-----RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE-HTDPNIIVML 123
G+ + + AY L+VY +T A+F+ +LR +I ++L
Sbjct: 67 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 124 IGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
+GNK+DL VS +G+A A F+ETSA NV+ F ++ Q+
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F ++ + +++ D + + M L+GNK DL
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-P 139
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V T+ A+ + F+ETSA VE+AF ++ +I
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 125
Query: 132 -----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ I + ++DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR-- 131
Y + Y L+ + V ++F+NV +W+ E+ H P +L+G + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLVAVSTEDGKAFA-EQESLYFMETSALDATNVENAFTEVL 171
++ E + A + +++ ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID ++ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGEICLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK+DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 3/160 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++ + G GVGKS+L+ RF K F T+ + + + D + QI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLR 131
++ A+ +LVY +T + + + ++ E +I +ML+GNK D
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 132 HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL 171
V + + +A A FMETSA NV+ F E+L
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K+V++GD VGK+ LL F+K E T+ F + ++ N+ +WDTAGQE
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR 131
Y + Y + LL + V +F N+ +W E++ + D V L+G K DLR
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLR 140
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI E + + ID + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-ESYRKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
K+V++GD VGK+ LL F+K E T+ F + ++ N+ +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLR 131
Y + Y + LL + V +F N+ +W E++ + D V L+G K DLR
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLR 139
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 9 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 67
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 126
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 67
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 126
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 11 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 69
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 70 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 128
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 129 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK+DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 3/164 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAG E
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 80
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ + +++ D ++ ++L+GNK DL
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 140
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176
V T+ + A + F+ETSA V++AF ++ +I K
Sbjct: 141 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 183
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E +I + + + ID + I DTAGQE
Sbjct: 10 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQE 68
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 69 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 127
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 128 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 5/164 (3%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
++K++L+G GVGKS L F E E+++ G + RS+ +D + ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 64
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE--HTDPNIIVMLIGNKTDL 130
+ R + ++VY VT +F+ +LR TD ++ ++L+GNK+DL
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD-DVPIILVGNKSDL 123
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
VS ++G+A A F+ETSA NV+ F V+ QI
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GN+ DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167
V + + A + ++ETSA VE+AF
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E +I + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 5/164 (3%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
++K++L+G GVGKS L F E E+++ G + RS+ +D + ++D Q
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 59
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE--HTDPNIIVMLIGNKTDL 130
+ R + ++VY VT +F+ +LR TD ++ ++L+GNK+DL
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD-DVPIILVGNKSDL 118
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
VS ++G+A A F+ETSA NV+ F V+ QI
Sbjct: 119 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 5/164 (3%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
++K++L+G GVGKS L F E E+++ G + RS+ +D + ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 64
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE--HTDPNIIVMLIGNKTDL 130
+ R + ++VY VT +F+ +LR TD ++ ++L+GNK+DL
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD-DVPIILVGNKSDL 123
Query: 131 RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
VS ++G+A A F+ETSA NV+ F V+ QI
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGK+ L + +N F E TI + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F + TI + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DT GQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F + TI + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAG+E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGKE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DT GQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGHE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAG E
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLE 67
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 128 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGGE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGVE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
KLV++GD GK+ LL +K +F T+ E + +D + V+ +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH- 132
Y + Y + L+ + + + +NV +W+ E+ H + ++L+G K DLR+
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HFCQGVPIILVGCKVDLRND 129
Query: 133 -----------LVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAF 167
V++++G++ A+Q + + E SA V F
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGIE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+KLV++G GVGKS L + +N F E TI + + + ID + I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETXLLDILDTAGGE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRH 132
Y A+ Y R G L V+ + +F+++ ++ +++ D + + M L+GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V + + A + ++ETSA VE+AF ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 16/175 (9%)
Query: 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK---VVKAQ 65
+ D +FK++L+G+SGVGKS L F + + + + R + +D + +V
Sbjct: 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYD 78
Query: 66 IW---DTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR---EHTDPNI 119
IW D G R + + L+V+ VT +F V L LR H D +
Sbjct: 79 IWEQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD--L 131
Query: 120 IVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
V+L+GNK+DL VS E+G+ A S +ETSA N F + QI
Sbjct: 132 PVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 8/170 (4%)
Query: 6 PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQ 65
P++ DY ++V+ G GVGKS+L+ RF K F TI + + + D V Q
Sbjct: 3 PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQ 59
Query: 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVG---RWLRELREHTDPNIIVM 122
I DT G ++ A+ +LV+ VT + + +G + + +++ + +I VM
Sbjct: 60 ITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPVM 118
Query: 123 LIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT 172
L+GNK D V T + +A A++ FMETSA NV+ F E+LT
Sbjct: 119 LVGNKCDETQR-EVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 6/168 (3%)
Query: 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
D +FK++L+G+SGVGKS L F + + + + R + +D + V ++D
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 71 GQERYRA-ITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR---EHTDPNIIVMLIGN 126
Q + + L+V+ VT +F V L LR H D + V+L+GN
Sbjct: 70 EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPVILVGN 127
Query: 127 KTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
K+DL VS E+G+ A S +ETSA N F + QI
Sbjct: 128 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
+FK++L+G+SGVGKS L F + + + + R + +D + V ++D Q
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 73 ERYRA-ITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR---EHTDPNIIVMLIGNKT 128
+ + L+V+ VT +F V L LR H D + V+L+GNK+
Sbjct: 62 GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPVILVGNKS 119
Query: 129 DLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174
DL VS E+G+ A S +ETSA N F + QI
Sbjct: 120 DLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Query: 16 LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY 75
L ++G G GKS L +F F E + +++ +D++ V ++ DTA +
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADLDTP 82
Query: 76 RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREH---TDPNIIVMLIGNKTDLRH 132
R Y A L+VY V +F + +L L H T +I +L+GNK D+
Sbjct: 83 RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 133 LVAVSTEDGKAFAEQESLYFMETSA-LDATNVENAFTEVLTQ 173
V+ +G A A + F E SA LD +V++ F E + +
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+L L+G GK+ ++ +FN + T+G F R + N +K +WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 78
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDL 130
R+R++ Y RG + + D + L L + I V+++GNK DL
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+L L+G GK+ ++ +FN + T+G F R + N +K +WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 87
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDL 130
R+R++ Y RG + + D + L L + I V+++GNK DL
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 145
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 16/130 (12%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G GK+ +L + E + + TIG T ++ K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLR------ELREHTDPNIIVMLIGNK 127
R R + Y++ G + V D Q V L+ ELR+ +++L NK
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDA-----VLLLFANK 127
Query: 128 TDLRHLVAVS 137
DL + +A+S
Sbjct: 128 QDLPNAMAIS 137
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G G GK+ +L + E + + TIG T + K + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 74 RYRAITSAYYRGAVGALLVYDV---TRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
R R++ YYR G + V D +R + V + R L E N + ++ NK DL
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQ--RMLNEDELRNAVWLVFANKQDL 130
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+L L+G GK+ ++ +F+ + T+G F R + N +K IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQP 78
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDL 130
R+R++ Y RG + + D + L L + I V+++GNK DL
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDL 136
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G G GK+ +L + E + + TIG T + K + +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 74 RYRAITSAYYRGAVGALLVYDV---TRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
R R++ YYR G + V D +R + V + R L E N ++ NK DL
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQ--RMLNEDELRNAAWLVFANKQDL 113
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G GK+ +L + + ++ + T+G T + K VK +WD GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 377
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL---REHTDPNIIVMLIGNKTDL 130
+ R + YY G G + V D + L + RE D I+++ NK DL
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD--AIILIFANKQDL 435
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G G GK+ +L + E + + TIG T + K + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 74 RYRAITSAYYRGAVGALLVYDV---TRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
R R++ YYR G + V D +R + V + R L E N ++ NK DL
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQ--RMLNEDELRNAAWLVFANKQDL 130
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+L+++G GK+ +L +F + + S T+G T ++++ K IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 71
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR-EHTDPNIIVMLIGNKTDL 130
R+ Y+ G + V D Q+ R L+ L E +++ NK DL
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 129
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+L+++G GK+ +L +F + + S T+G T ++++ K IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR-EHTDPNIIVMLIGNKTDL 130
R+ Y+ G + V D Q+ R L+ L E +++ NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G GK+ +L + + ++ + T+G T + K VK +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 67
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL---REHTDPNIIVMLIGNKTDL 130
+ R + YY G G + V D + L + RE D I+++ NK DL
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 125
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G GK+ +L + + ++ + T+G T + K VK +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL---REHTDPNIIVMLIGNKTDL 130
+ R + YY G G + V D + L + RE D I+++ NK DL
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 113
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G GK+ +L + + ++ + T+G T + K VK +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL---REHTDPNIIVMLIGNKTDL 130
+ R + YY G G + V D + L + RE D I+++ NK DL
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 113
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+L+++G GK+ +L +F + + S T+G T ++++ K IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR-EHTDPNIIVMLIGNKTDL 130
R+ Y+ G + V D Q+ R L+ L E +++ NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G GK+ +L + + ++ + T+G T + K VK +WD GQ+
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 68
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL---REHTDPNIIVMLIGNKTDL 130
+ R + YY G G + V D + L + RE D I+++ NK DL
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 126
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G GK+++L + E + + TIG T ++ K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 74 RYRAITSAYYRGAVGALLVYDVT-RHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132
+ R + YY+ + V D R + ++ L E N I+++ NK DL
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 133 LVAVS 137
+++S
Sbjct: 133 AMSIS 137
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G GK+ +L + E + + TIG T ++ K + +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRH 132
+ R + Y++ G + V D Q L++ L+E + ++++ NK D+ +
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 133 LVAVS 137
+ VS
Sbjct: 145 AMPVS 149
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K++++G GK+ +L +F+ NE + + TIG + I+N + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQES 77
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLI-GNKTDLRHL 133
R+ + YY ++V D T L ++ H D +LI NK D++
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 134 VAVS 137
+ V+
Sbjct: 138 MTVA 141
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G G GK+ +L R E + +K TIG T S K +K +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY----KNLKLNVWDLGGQT 73
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLR-ELREHTDPNIIVMLIGNKTD 129
R YY + V D T + L L+E + +++ NK D
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
+++ +G GK+ +L + + ++ + T+G T + K VK +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 56
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL---REHTDPNIIVMLIGNKTDL 130
R + YY G G + V D + L + RE D I+++ NK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDA--IILIFANKQDL 113
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K++++G GK+ +L +F+ NE + + TIG + I+N + +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQES 78
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLI-GNKTDLRHL 133
R+ + YY ++V D T L ++ H D +LI NK D++
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 138
Query: 134 VAVS 137
+ V+
Sbjct: 139 MTVA 142
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72
+ +L+++G GK+ +L +F + + S T+G T ++++ K IWD G
Sbjct: 1 MLRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGL 55
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR-EHTDPNIIVMLIGNKTDL 130
+ R+ Y+ G + V D Q+ R L+ L E +++ NK DL
Sbjct: 56 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 114
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K++++G GK+ +L +F+ NE + + TIG + I+N + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQES 72
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLI-GNKTDLRHL 133
R+ + YY ++V D T L ++ H D +LI NK D++
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 134 VAVS 137
+ V+
Sbjct: 133 MTVA 136
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
K++++G GK+ +L +F+ NE + + TIG + I+N + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQES 72
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLI-GNKTDLRHL 133
R+ + YY ++V D T L ++ H D +LI NK D++
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 134 VAVS 137
+ V+
Sbjct: 133 MTVA 136
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 15 KLVLIGDSGVGKSNLLSRFT---KNEFNLESKSTIGVEFATRSLRIDNKVVK---AQIWD 68
KL ++G++G GK+ LL + K++ +S +T+G++ ++I +K + +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQS-ATVGIDVKDWPIQIRDKRKRDLVLNVWD 60
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTR-HATFQNVGRWLREL--REHTDPNIIVMLIG 125
AG+E + + + L VYD+++ A WL + R + P V+L+G
Sbjct: 61 FAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSP---VILVG 117
Query: 126 NKTDL 130
D+
Sbjct: 118 THLDV 122
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G GK+ +L + E + + TIG T ++ K + +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 220
Query: 74 RYRAITSAYYRGAVGALLVYDVT-RHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
+ R + Y++ G + V D R + +R L E + ++++ NK DL
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 278
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 15 KLVLIGDSGVGKSNLLSRFT---KNEFNLESKSTIGVEFATRSLRIDNKVVK---AQIWD 68
KL ++G++G GK+ LL + K++ +S +T+G++ ++I +K + +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQS-ATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTR-HATFQNVGRWLREL--REHTDPNIIVMLIG 125
AG+E + + + L VYD+++ A WL + R + P V+L+G
Sbjct: 63 FAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSP---VILVG 119
Query: 126 NKTDL 130
D+
Sbjct: 120 THLDV 124
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G GK+ +L + + ++ + T+G T + K VK +WD G +
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 58
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL---REHTDPNIIVMLIGNKTDL 130
+ R + YY G G + V D + L + RE D I+++ NK DL
Sbjct: 59 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 116
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G GK+ +L + + ++ + T+G T + K VK +WD G +
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 57
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL---REHTDPNIIVMLIGNKTDL 130
+ R + YY G G + V D + L + RE D I+++ NK DL
Sbjct: 58 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 115
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G GK+ +L + + ++ + T+G T + K VK +WD G +
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 68
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL---REHTDPNIIVMLIGNKTDL 130
+ R + YY G G + V D + L + RE D I+++ NK DL
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 126
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G GK+ +L + E + + TIG T ++ K + +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 55
Query: 74 RYRAITSAYYRGAVGALLVYDVT-RHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
+ R + Y++ G + V D R + +R L E + ++++ NK DL
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G GK+ +L + E + + TIG T ++ K + +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 71
Query: 74 RYRAITSAYYRGAVGALLVYDVT-RHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
+ R + Y++ G + V D R + +R L E + ++++ NK DL
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 129
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G GK+ +L + E + + TIG T ++ K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 74 RYRAITSAYYRGAVGALLVYDVT-RHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
+ R + Y++ G + V D R + +R L E + ++++ NK DL
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 130
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G G GK+ +L + E + + TIG F ++ N + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIG--FNVECVQYCN--ISFTVWDVGGQD 72
Query: 74 RYRAITSAYYRGAVGALLVYDV---TRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
R R++ YY G + V D +R + V + R L E N ++ NK DL
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQ--RMLNEDELCNAAWLVFANKQDL 130
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G GK+ +L + E + + TIG T ++ K + +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 75
Query: 74 RYRAITSAYYRGAVGALLVYDVT-RHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
+ R + Y++ G + V D R + R L E + ++++ NK DL
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 133
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 8/146 (5%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
+++++G GK+ +L + E + + TIG T R + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEV-VTTIPTIGFNVETVEFR----NISFTVWDVGGQDK 73
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWL-RELREHTDPNIIVMLIGNKTDLRHL 133
R + YY G + V D + L R + E + I+++ NK DL +
Sbjct: 74 IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNA 133
Query: 134 VAVS--TEDGKAFAEQESLYFMETSA 157
++ + TE +E +F++++
Sbjct: 134 MSAAEVTEKLHLNTIRERNWFIQSTC 159
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 16/126 (12%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRS------LRIDNKVVKA--Q 65
K+ LIGD GK++LL + F+ + T G+ T+ L D+++ +
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREH--TDPNIIVML 123
WD GQE A + + +L+ D T N WLR + ++ P I+VM
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLD---SRTDSNKHYWLRHIEKYGGKSPVIVVM- 157
Query: 124 IGNKTD 129
NK D
Sbjct: 158 --NKID 161
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQ---IWDTAG 71
K++++G GK+ +L +F NE + + TIG ++ VVK +WD G
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEV-VHTSPTIGS-------NVEEIVVKNTHFLMWDIGG 69
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDL 130
QE R+ + YY +LV D L + H D V++ NK D+
Sbjct: 70 QESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDM 129
Query: 131 R 131
+
Sbjct: 130 K 130
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 25 GKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYR 84
GK+ +L +F + + S T+G T ++++ K IWD GQ+ R+ Y+
Sbjct: 30 GKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 85 GAVGALLVYDVTRHATFQNVGRWLRELR-EHTDPNIIVMLIGNKTDL 130
G + V D Q+ R L+ L E +++ NK DL
Sbjct: 85 STDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 6/125 (4%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G G GK+ +L R E + + TIG T + K +K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVET----VTYKNLKFQVWDLGGQT 57
Query: 74 RYRAITSAYYRGAVGALLVYD-VTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132
R YY + V D R + + L E I+++ NK D+
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 117
Query: 133 LVAVS 137
+ S
Sbjct: 118 AMTPS 122
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G GK+ +L + E + + TIG T ++ K + +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGLD 57
Query: 74 RYRAITSAYYRGAVGALLVYDVT-RHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130
+ R + Y++ G + V D R + +R L E + ++++ NK DL
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 115
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 32/210 (15%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESK---STIGVEFATRSLRIDNKVVKAQIWDTAG 71
KL+L+G SG GKS++ S N +++ +TI VE + LR + +WD G
Sbjct: 8 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLGNMT-LNLWDCGG 64
Query: 72 Q----ERYRAITSAYYRGAVGALL-VYDVTRHATFQNV---GRWLRELREHTDPNIIVML 123
Q E Y + V L+ V+DV +++ + L++LR+++ P+ + +
Sbjct: 65 QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS-PDAKIFV 123
Query: 124 IGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAV 183
+ +K DL L ++E L+ + L T+ E F ++ I +
Sbjct: 124 LLHKMDLVQL-----------DKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLY 172
Query: 184 EAGSNGTASTLPSKGETINVKDDSSVLKRI 213
+A S S +P N+ + S LK+
Sbjct: 173 KAWSQIVCSLIP------NMSNHQSNLKKF 196
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 13/167 (7%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+L ++GD+ GKS+L+ RF + + K+ E + + +D + I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRW---LRELREHTDPNIIVMLIGNKTDL 130
A + + A + V+ + +FQ V R L LR + + L+G + +
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 131 RHLVAVSTEDGKA---FAEQESLYFMETSALDATNVENAFTEVLTQI 174
D +A A+ + + ET A NV+ F EV ++
Sbjct: 121 SASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 167
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
Query: 6 PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQ 65
PD+E +++L+G GK+ LL + + S T F +S + ++ K
Sbjct: 14 PDQE----VRILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKS--VQSQGFKLN 64
Query: 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLI 124
+WD GQ + R +Y+ + V D F+ G+ L EL E + + V++
Sbjct: 65 VWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIF 124
Query: 125 GNKTDL 130
NK DL
Sbjct: 125 ANKQDL 130
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
Query: 6 PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQ 65
PD+E +++L+G GK+ LL + + S T F +S + ++ K
Sbjct: 13 PDQE----VRILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKS--VQSQGFKLN 63
Query: 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLI 124
+WD GQ + R +Y+ + V D F+ G+ L EL E + + V++
Sbjct: 64 VWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIF 123
Query: 125 GNKTDL 130
NK DL
Sbjct: 124 ANKQDL 129
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 7 DEEYDYL--FKLVLIGDSGVGKSNLLSRFTKNEFNLESKS 44
DE DYL F +L G SGVGKS++LSR T E + S
Sbjct: 157 DELVDYLEGFICILAGPSGVGKSSILSRLTGEELRTQEVS 196
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 13/167 (7%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+L ++GD+ GKS+L+ RF + + K+ E + + +D + I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRW---LRELREHTDPNIIVMLIGNKTDL 130
A + + A + V+ + +FQ V R L LR + + L+G + +
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 131 RHLVAVSTEDGKA---FAEQESLYFMETSALDATNVENAFTEVLTQI 174
D +A A+ + + ET A NV+ F EV ++
Sbjct: 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 33.5 bits (75), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 9/158 (5%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
+++++G G GK+ +L R E + + TIG T + K +K Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVET----VTYKNLKFQVWDLGGLT 59
Query: 74 RYRAITSAYYRGAVGALLVYD-VTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132
R YY + V D R + + L E I+++ NK D+
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 119
Query: 133 LVA---VSTEDGKAFAEQESLYFMETSALDATNVENAF 167
+ ++ G + +TSA T ++ A
Sbjct: 120 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 157
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPN---IIVM 122
++D +GQ RYR + YY+ + V D + L L H D I ++
Sbjct: 71 VFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL 130
Query: 123 LIGNKTDLRHLV 134
NK DLR V
Sbjct: 131 FFANKMDLRDAV 142
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
+++++G G GK+ +L R E + + TIG T + K +K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVET----VTYKNLKFQVWDLGGLTS 63
Query: 75 YRAITSAYYRGAVGALLVYD 94
R YY + V D
Sbjct: 64 IRPYWRCYYSNTDAVIYVVD 83
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
+++L+G GK+ LL + + S T F +S + ++ K +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKS--VQSQGFKLNVWDIGGQRK 60
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDL 130
R +Y+ + V D F+ G+ L EL E + + V++ NK DL
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 117
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134
YR ++ G V L + ++ H + + +R + D N+I ++G LR L
Sbjct: 500 YRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYLRMLT 559
Query: 135 AVSTEDGKAFA 145
+D +AF
Sbjct: 560 HAFDDDARAFC 570
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134
YR ++ G V L + ++ H + + +R + D N+I ++G LR L
Sbjct: 500 YRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYLRMLT 559
Query: 135 AVSTEDGKAFA 145
+D +AF
Sbjct: 560 HAFDDDARAFC 570
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74
+++L+G GK+ LL + + S T F +S + ++ K +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKS--VQSQGFKLNVWDIGGLRK 60
Query: 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDL 130
R +Y+ + V D F+ G+ L EL E + + V++ NK DL
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 117
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
F ++++G +GVGK+ + + + +F + KS + A + R V + Q+W GQ
Sbjct: 294 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLA--AGDTFRA-AAVEQLQVW---GQ- 345
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV 104
R A + GA A +++D + A +N+
Sbjct: 346 RNNIPVIAQHTGADSASVIFDAIQAAKARNI 376
>pdb|3NB0|A Chain A, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|B Chain B, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|C Chain C, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|D Chain D, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3RT1|A Chain A, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|B Chain B, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|C Chain C, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|D Chain D, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
Length = 725
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 163 VENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSK-GETINVKDDSSVLKRI 213
+EN EV T I K + A+ NG + LP+ GE + D + +RI
Sbjct: 398 LENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRI 449
>pdb|3NAZ|A Chain A, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|B Chain B, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|C Chain C, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|D Chain D, Basal State Form Of Yeast Glycogen Synthase
pdb|3NCH|A Chain A, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|B Chain B, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|C Chain C, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|D Chain D, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3O3C|A Chain A, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|B Chain B, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|C Chain C, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|D Chain D, Glycogen Synthase Basal State Udp Complex
pdb|3RSZ|A Chain A, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|B Chain B, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|C Chain C, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|D Chain D, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
Length = 725
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 163 VENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSK-GETINVKDDSSVLKRI 213
+EN EV T I K + A+ NG + LP+ GE + D + +RI
Sbjct: 398 LENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRI 449
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
F ++++G +GVGK+ + + + +F + KS V A V + Q+W GQ
Sbjct: 94 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKS---VMLAAGDTFRAAAVEQLQVW---GQ- 145
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV 104
R A + GA A +++D + A +N+
Sbjct: 146 RNNIPVIAQHTGADSASVIFDAIQAAKARNI 176
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
F ++++G +GVGK+ + + + +F + KS V A V + Q+W GQ
Sbjct: 100 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKS---VMLAAGDTFRAAAVEQLQVW---GQ- 151
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV 104
R A + GA A +++D + A +N+
Sbjct: 152 RNNIPVIAQHTGADSASVIFDAIQAAKARNI 182
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73
F ++++G +GVGK+ + + + +F + KS V A V + Q+W GQ
Sbjct: 99 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKS---VMLAAGDTFRAAAVEQLQVW---GQ- 150
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNV 104
R A + GA A +++D + A +N+
Sbjct: 151 RNNIPVIAQHTGADSASVIFDAIQAAKARNI 181
>pdb|2ZG6|A Chain A, Crystal Structure Of Hypothetical Protein; Probable 2-
Haloalkanoic Acid Dehalogenase From Sulfolobus Tokodaii
pdb|2ZG6|B Chain B, Crystal Structure Of Hypothetical Protein; Probable 2-
Haloalkanoic Acid Dehalogenase From Sulfolobus Tokodaii
Length = 220
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 113 EHTDPNIIVMLIG---NKTDLRHLVAVSTEDGKAFAEQESLYFME---TSALDATNVENA 166
EH DP + ++G ++ ++ L DG+AF ++L F+E ++ V NA
Sbjct: 61 EHVDPKDFLYILGIYPSERLVKELKEADIRDGEAFLYDDTLEFLEGLKSNGYKLALVSNA 120
Query: 167 FTEVLTQIYKIVSKRAVEA 185
V T + K K+ +A
Sbjct: 121 SPRVKTLLEKFDLKKYFDA 139
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLE--SKSTIGVEFA--TRSLRIDNKVVKAQIW 67
+ F ++ +G++G+GKS L+ +F E + + GV+ T L+ N +K I
Sbjct: 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIV 100
Query: 68 DTAG 71
T G
Sbjct: 101 STVG 104
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70
D K +++G+ G GKS + + + FN + GV+ A L+ W+
Sbjct: 2 DKELKFLVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVD-ALNKLQAGGYGFVISDWNMP 60
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHATFQNV 104
+ + + GA+ AL V VT A +N+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVTAEAKKENI 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,980,212
Number of Sequences: 62578
Number of extensions: 217007
Number of successful extensions: 1381
Number of sequences better than 100.0: 369
Number of HSP's better than 100.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 700
Number of HSP's gapped (non-prelim): 370
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)