Query 027824
Match_columns 218
No_of_seqs 143 out of 1806
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 15:45:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 2.4E-45 5.2E-50 258.9 22.1 176 7-182 3-179 (205)
2 KOG0078 GTP-binding protein SE 100.0 6E-42 1.3E-46 245.2 23.4 176 7-182 6-181 (207)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 1.3E-42 2.8E-47 244.2 18.9 198 11-217 3-200 (200)
4 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.6E-41 3.5E-46 241.9 22.1 200 7-206 8-207 (222)
5 KOG0098 GTPase Rab2, small G p 100.0 1.8E-41 4E-46 236.6 21.0 183 9-191 2-184 (216)
6 KOG0080 GTPase Rab18, small G 100.0 2.9E-41 6.4E-46 230.0 19.1 170 8-177 6-176 (209)
7 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 4.1E-41 9E-46 236.7 19.7 170 10-179 19-189 (221)
8 PLN03110 Rab GTPase; Provision 100.0 6.5E-40 1.4E-44 246.5 27.0 210 7-217 6-215 (216)
9 KOG0079 GTP-binding protein H- 100.0 1.3E-40 2.8E-45 223.9 15.3 173 8-181 3-175 (198)
10 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.6E-39 1E-43 239.7 24.7 195 14-216 1-201 (201)
11 KOG0095 GTPase Rab30, small G 100.0 3.8E-40 8.2E-45 222.2 16.2 208 9-217 3-210 (213)
12 cd04120 Rab12 Rab12 subfamily. 100.0 2.3E-38 5E-43 234.8 25.2 164 14-177 1-165 (202)
13 cd04121 Rab40 Rab40 subfamily. 100.0 2.2E-38 4.7E-43 232.8 23.9 167 10-177 3-169 (189)
14 KOG0394 Ras-related GTPase [Ge 100.0 4.2E-39 9E-44 224.4 18.1 172 9-180 5-183 (210)
15 KOG0093 GTPase Rab3, small G p 100.0 5.3E-39 1.1E-43 215.9 17.2 176 6-181 14-189 (193)
16 KOG0086 GTPase Rab4, small G p 100.0 2E-38 4.4E-43 214.6 17.7 188 7-194 3-190 (214)
17 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 5.1E-37 1.1E-41 231.2 25.8 177 1-179 1-192 (232)
18 KOG0088 GTPase Rab21, small G 100.0 8.2E-39 1.8E-43 217.7 14.4 211 7-217 7-217 (218)
19 cd04110 Rab35 Rab35 subfamily. 100.0 5.7E-37 1.2E-41 228.0 25.0 171 10-181 3-173 (199)
20 KOG0091 GTPase Rab39, small G 100.0 4.5E-38 9.8E-43 215.1 16.8 204 10-217 5-213 (213)
21 cd04112 Rab26 Rab26 subfamily. 100.0 2.1E-36 4.7E-41 223.6 23.9 164 14-177 1-165 (191)
22 cd04126 Rab20 Rab20 subfamily. 100.0 1.6E-36 3.4E-41 227.3 23.3 187 14-216 1-220 (220)
23 cd04125 RabA_like RabA-like su 100.0 3.7E-36 8.1E-41 221.9 24.7 165 14-178 1-165 (188)
24 cd04122 Rab14 Rab14 subfamily. 100.0 3.7E-36 8E-41 217.7 23.3 164 13-176 2-165 (166)
25 PLN03108 Rab family protein; P 100.0 1.3E-35 2.8E-40 222.3 26.5 207 10-216 3-210 (210)
26 cd04144 Ras2 Ras2 subfamily. 100.0 1.9E-36 4.1E-41 223.7 21.8 165 15-180 1-168 (190)
27 cd04111 Rab39 Rab39 subfamily. 100.0 8.1E-36 1.8E-40 223.4 25.4 169 13-181 2-172 (211)
28 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.9E-36 6.3E-41 220.5 22.2 162 11-174 3-179 (182)
29 cd04133 Rop_like Rop subfamily 100.0 2.5E-36 5.4E-41 219.6 20.8 159 14-174 2-172 (176)
30 PTZ00369 Ras-like protein; Pro 100.0 5.4E-36 1.2E-40 221.1 22.1 165 12-177 4-169 (189)
31 KOG0097 GTPase Rab14, small G 100.0 3.8E-36 8.3E-41 201.3 19.1 207 9-215 7-213 (215)
32 cd01867 Rab8_Rab10_Rab13_like 100.0 1.3E-35 2.8E-40 215.0 23.1 166 11-176 1-166 (167)
33 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 8.6E-36 1.9E-40 216.8 21.8 164 13-177 2-166 (172)
34 cd04131 Rnd Rnd subfamily. Th 100.0 1.1E-35 2.4E-40 217.0 21.4 161 13-175 1-176 (178)
35 cd04127 Rab27A Rab27a subfamil 100.0 2.8E-35 6.1E-40 215.7 23.1 167 11-177 2-179 (180)
36 PF00071 Ras: Ras family; Int 100.0 1.9E-35 4.2E-40 213.0 21.8 161 15-175 1-161 (162)
37 cd01865 Rab3 Rab3 subfamily. 100.0 4.5E-35 9.8E-40 211.7 23.5 162 14-175 2-163 (165)
38 cd04117 Rab15 Rab15 subfamily. 100.0 2.7E-35 5.9E-40 212.0 22.1 160 14-173 1-160 (161)
39 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3.9E-35 8.5E-40 219.9 23.7 163 14-178 2-179 (222)
40 cd04109 Rab28 Rab28 subfamily. 100.0 5.1E-35 1.1E-39 220.0 23.5 164 14-177 1-168 (215)
41 cd01875 RhoG RhoG subfamily. 100.0 4.3E-35 9.4E-40 216.5 22.4 162 13-176 3-178 (191)
42 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 8.4E-35 1.8E-39 210.5 23.1 163 13-175 2-164 (166)
43 cd04119 RJL RJL (RabJ-Like) su 100.0 7.2E-35 1.6E-39 210.9 22.2 162 14-175 1-167 (168)
44 cd01866 Rab2 Rab2 subfamily. 100.0 1.5E-34 3.4E-39 209.5 23.7 166 11-176 2-167 (168)
45 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1E-34 2.2E-39 212.7 21.9 162 14-176 1-167 (182)
46 PLN03071 GTP-binding nuclear p 100.0 1.6E-34 3.4E-39 217.5 22.8 165 10-177 10-174 (219)
47 cd04118 Rab24 Rab24 subfamily. 100.0 3.8E-34 8.1E-39 212.0 24.2 164 14-178 1-169 (193)
48 cd01868 Rab11_like Rab11-like. 100.0 2.9E-34 6.4E-39 207.4 23.0 163 12-174 2-164 (165)
49 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.5E-34 3.2E-39 210.8 20.9 159 14-174 2-174 (175)
50 cd01864 Rab19 Rab19 subfamily. 100.0 4.5E-34 9.7E-39 206.5 22.5 162 12-173 2-164 (165)
51 cd04113 Rab4 Rab4 subfamily. 100.0 5.2E-34 1.1E-38 205.3 21.8 160 14-173 1-160 (161)
52 cd04136 Rap_like Rap-like subf 100.0 3.8E-34 8.2E-39 206.3 20.8 160 14-174 2-162 (163)
53 cd04132 Rho4_like Rho4-like su 100.0 9.3E-34 2E-38 208.9 22.6 165 14-180 1-172 (187)
54 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.4E-33 3.1E-38 204.7 23.0 162 15-176 2-166 (170)
55 cd04175 Rap1 Rap1 subgroup. T 100.0 6.5E-34 1.4E-38 205.4 20.8 160 14-174 2-162 (164)
56 PLN03118 Rab family protein; P 100.0 3.7E-33 8.1E-38 209.4 25.5 170 7-177 8-179 (211)
57 smart00175 RAB Rab subfamily o 100.0 1.9E-33 4.2E-38 202.8 22.6 163 14-176 1-163 (164)
58 cd04106 Rab23_lke Rab23-like s 100.0 1.5E-33 3.3E-38 203.0 22.0 158 14-172 1-160 (162)
59 cd04116 Rab9 Rab9 subfamily. 100.0 2.1E-33 4.6E-38 203.9 22.7 163 10-173 2-169 (170)
60 cd00877 Ran Ran (Ras-related n 100.0 1.9E-33 4.2E-38 203.3 21.7 160 14-176 1-160 (166)
61 cd01871 Rac1_like Rac1-like su 100.0 1.8E-33 3.9E-38 204.9 20.9 158 14-173 2-173 (174)
62 cd04124 RabL2 RabL2 subfamily. 100.0 3.4E-33 7.3E-38 201.1 21.9 161 14-178 1-161 (161)
63 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3.9E-33 8.4E-38 202.6 22.1 162 13-174 2-168 (170)
64 cd04176 Rap2 Rap2 subgroup. T 100.0 2.6E-33 5.6E-38 202.1 20.4 160 14-174 2-162 (163)
65 smart00173 RAS Ras subfamily o 100.0 4.2E-33 9E-38 201.2 21.2 161 14-175 1-162 (164)
66 KOG0081 GTPase Rab27, small G 100.0 3.9E-35 8.4E-40 199.9 9.7 174 8-181 4-187 (219)
67 cd01861 Rab6 Rab6 subfamily. 100.0 8E-33 1.7E-37 199.1 22.0 160 14-173 1-160 (161)
68 cd04140 ARHI_like ARHI subfami 100.0 6.2E-33 1.3E-37 200.6 21.1 158 14-172 2-162 (165)
69 cd04134 Rho3 Rho3 subfamily. 100.0 3.6E-33 7.7E-38 206.0 20.2 160 14-175 1-174 (189)
70 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1E-32 2.2E-37 199.1 21.5 161 13-174 2-163 (164)
71 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.1E-32 2.4E-37 198.3 21.6 159 14-174 2-161 (162)
72 smart00176 RAN Ran (Ras-relate 100.0 8.5E-33 1.8E-37 204.7 21.5 156 19-177 1-156 (200)
73 cd01860 Rab5_related Rab5-rela 100.0 2.2E-32 4.8E-37 197.1 22.9 161 14-174 2-162 (163)
74 cd04142 RRP22 RRP22 subfamily. 100.0 1.9E-32 4E-37 203.1 21.2 163 14-176 1-175 (198)
75 cd04101 RabL4 RabL4 (Rab-like4 100.0 3.3E-32 7.1E-37 196.5 22.0 160 14-174 1-163 (164)
76 cd01873 RhoBTB RhoBTB subfamil 100.0 1.2E-32 2.7E-37 203.4 19.9 158 13-173 2-194 (195)
77 cd04123 Rab21 Rab21 subfamily. 100.0 5.7E-32 1.2E-36 194.6 22.7 161 14-174 1-161 (162)
78 cd01862 Rab7 Rab7 subfamily. 100.0 9.2E-32 2E-36 195.5 22.7 164 14-177 1-169 (172)
79 smart00174 RHO Rho (Ras homolo 100.0 3E-32 6.6E-37 198.5 19.8 158 16-175 1-172 (174)
80 cd04143 Rhes_like Rhes_like su 100.0 6E-32 1.3E-36 206.3 21.4 160 14-174 1-170 (247)
81 cd04148 RGK RGK subfamily. Th 100.0 8.6E-32 1.9E-36 202.9 21.6 167 14-182 1-170 (221)
82 cd04177 RSR1 RSR1 subgroup. R 100.0 1.2E-31 2.6E-36 194.4 21.4 161 14-175 2-164 (168)
83 cd04103 Centaurin_gamma Centau 100.0 5.9E-32 1.3E-36 193.8 19.4 153 14-173 1-157 (158)
84 cd04130 Wrch_1 Wrch-1 subfamil 100.0 8.7E-32 1.9E-36 196.0 20.6 157 14-172 1-171 (173)
85 cd01863 Rab18 Rab18 subfamily. 100.0 1.6E-31 3.5E-36 192.3 21.7 159 14-173 1-160 (161)
86 cd04114 Rab30 Rab30 subfamily. 100.0 2.9E-31 6.3E-36 192.4 23.1 164 11-174 5-168 (169)
87 KOG0083 GTPase Rab26/Rab37, sm 100.0 6.8E-34 1.5E-38 188.5 7.5 161 17-177 1-162 (192)
88 cd04146 RERG_RasL11_like RERG/ 100.0 7.4E-32 1.6E-36 194.9 18.5 160 15-175 1-164 (165)
89 cd00154 Rab Rab family. Rab G 100.0 3.6E-31 7.9E-36 189.4 21.5 158 14-171 1-158 (159)
90 cd01892 Miro2 Miro2 subfamily. 100.0 1.1E-31 2.3E-36 194.7 18.9 163 11-175 2-166 (169)
91 cd04135 Tc10 TC10 subfamily. 100.0 2.8E-31 6.1E-36 193.4 20.1 159 14-174 1-173 (174)
92 cd04139 RalA_RalB RalA/RalB su 100.0 3.8E-30 8.2E-35 185.5 21.7 161 14-175 1-162 (164)
93 cd00876 Ras Ras family. The R 100.0 3.8E-30 8.1E-35 184.7 20.4 158 15-173 1-159 (160)
94 KOG0395 Ras-related GTPase [Ge 100.0 1.9E-30 4.1E-35 190.8 18.9 164 12-176 2-166 (196)
95 cd01870 RhoA_like RhoA-like su 100.0 5.1E-30 1.1E-34 186.9 20.9 159 14-174 2-174 (175)
96 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 6.5E-30 1.4E-34 187.7 19.4 167 13-182 3-177 (183)
97 cd04149 Arf6 Arf6 subfamily. 100.0 3.6E-30 7.8E-35 186.5 17.7 154 12-172 8-167 (168)
98 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 6E-31 1.3E-35 189.9 13.4 153 15-172 1-163 (164)
99 cd04137 RheB Rheb (Ras Homolog 100.0 2.1E-29 4.6E-34 184.6 21.5 163 14-177 2-165 (180)
100 KOG4252 GTP-binding protein [S 100.0 3.6E-32 7.7E-37 189.0 6.3 173 7-180 14-186 (246)
101 cd04129 Rho2 Rho2 subfamily. 100.0 1.4E-29 3E-34 186.6 20.2 163 14-178 2-176 (187)
102 cd04147 Ras_dva Ras-dva subfam 100.0 2E-29 4.3E-34 187.4 20.9 160 15-175 1-163 (198)
103 smart00177 ARF ARF-like small 100.0 2.4E-30 5.2E-35 188.7 15.6 156 12-174 12-173 (175)
104 PLN00223 ADP-ribosylation fact 100.0 1.5E-29 3.3E-34 185.3 19.3 159 11-176 15-179 (181)
105 cd04158 ARD1 ARD1 subfamily. 100.0 1.4E-29 3E-34 183.7 18.6 155 15-176 1-162 (169)
106 cd04150 Arf1_5_like Arf1-Arf5- 100.0 2.9E-30 6.3E-35 185.4 14.8 152 14-172 1-158 (159)
107 KOG0393 Ras-related small GTPa 100.0 1.2E-30 2.7E-35 187.8 12.5 164 11-176 2-180 (198)
108 cd04102 RabL3 RabL3 (Rab-like3 100.0 3.2E-29 6.9E-34 185.5 19.3 148 14-161 1-176 (202)
109 PTZ00132 GTP-binding nuclear p 100.0 1.5E-28 3.2E-33 185.0 22.9 166 8-176 4-169 (215)
110 cd04154 Arl2 Arl2 subfamily. 100.0 3.6E-29 7.8E-34 182.2 17.8 158 8-172 9-172 (173)
111 cd00157 Rho Rho (Ras homology) 100.0 1.2E-28 2.6E-33 178.9 20.0 157 14-172 1-170 (171)
112 PTZ00133 ADP-ribosylation fact 100.0 8.8E-29 1.9E-33 181.4 19.4 159 12-177 16-180 (182)
113 cd01893 Miro1 Miro1 subfamily. 100.0 1.3E-28 2.8E-33 178.1 18.9 160 14-176 1-165 (166)
114 PTZ00099 rab6; Provisional 100.0 1.1E-27 2.4E-32 174.2 20.1 141 36-176 3-143 (176)
115 cd04157 Arl6 Arl6 subfamily. 100.0 1.9E-28 4.1E-33 176.4 14.7 152 15-172 1-161 (162)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.2E-27 2.5E-32 174.4 18.0 153 13-172 15-173 (174)
117 cd04161 Arl2l1_Arl13_like Arl2 100.0 2.9E-28 6.3E-33 176.4 14.5 153 15-172 1-166 (167)
118 PLN00023 GTP-binding protein; 100.0 3E-27 6.5E-32 183.2 21.0 144 7-150 15-189 (334)
119 cd04156 ARLTS1 ARLTS1 subfamil 100.0 9.7E-28 2.1E-32 172.4 16.0 152 15-172 1-159 (160)
120 cd04160 Arfrp1 Arfrp1 subfamil 100.0 1.7E-27 3.6E-32 172.3 16.6 152 15-172 1-166 (167)
121 cd04151 Arl1 Arl1 subfamily. 100.0 6.3E-28 1.4E-32 173.1 13.9 151 15-172 1-157 (158)
122 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.5E-27 3.2E-32 171.1 15.5 151 15-172 1-157 (158)
123 cd00879 Sar1 Sar1 subfamily. 100.0 4E-27 8.8E-32 173.9 17.9 155 12-173 18-189 (190)
124 KOG0073 GTP-binding ADP-ribosy 100.0 1.5E-26 3.2E-31 158.8 18.0 164 9-177 12-180 (185)
125 PF00025 Arf: ADP-ribosylation 100.0 1E-26 2.2E-31 169.3 17.0 158 10-174 11-175 (175)
126 smart00178 SAR Sar1p-like memb 99.9 3.1E-26 6.6E-31 168.3 17.8 156 11-173 15-183 (184)
127 cd04159 Arl10_like Arl10-like 99.9 5.6E-26 1.2E-30 162.5 16.3 152 15-172 1-158 (159)
128 cd01890 LepA LepA subfamily. 99.9 1.2E-25 2.5E-30 164.5 17.0 154 15-174 2-176 (179)
129 cd01897 NOG NOG1 is a nucleola 99.9 1.9E-25 4.1E-30 161.7 16.5 156 14-174 1-167 (168)
130 cd01878 HflX HflX subfamily. 99.9 1.4E-25 3E-30 167.5 16.1 157 10-173 38-203 (204)
131 cd04155 Arl3 Arl3 subfamily. 99.9 1.6E-25 3.4E-30 162.9 15.9 154 9-172 10-172 (173)
132 TIGR00231 small_GTP small GTP- 99.9 8.1E-25 1.7E-29 156.2 18.9 156 14-170 2-159 (161)
133 PRK12299 obgE GTPase CgtA; Rev 99.9 6E-25 1.3E-29 174.0 18.9 163 13-176 158-329 (335)
134 cd01898 Obg Obg subfamily. Th 99.9 2.3E-25 4.9E-30 161.6 15.1 157 15-173 2-169 (170)
135 COG1100 GTPase SAR1 and relate 99.9 5.2E-24 1.1E-28 160.7 20.9 169 13-181 5-191 (219)
136 cd04171 SelB SelB subfamily. 99.9 1.7E-24 3.7E-29 155.9 17.3 152 14-172 1-163 (164)
137 TIGR02528 EutP ethanolamine ut 99.9 4.7E-25 1E-29 155.4 13.0 134 15-171 2-141 (142)
138 cd00882 Ras_like_GTPase Ras-li 99.9 1.2E-23 2.5E-28 148.9 18.2 153 18-171 1-156 (157)
139 KOG1673 Ras GTPases [General f 99.9 1.5E-24 3.2E-29 147.7 11.3 165 12-177 19-188 (205)
140 PRK04213 GTP-binding protein; 99.9 1.3E-24 2.8E-29 161.9 11.4 154 10-176 6-193 (201)
141 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.2E-23 2.5E-28 152.3 15.9 156 15-174 2-165 (168)
142 KOG0070 GTP-binding ADP-ribosy 99.9 2.8E-24 6.1E-29 151.3 12.1 159 11-176 15-179 (181)
143 cd01891 TypA_BipA TypA (tyrosi 99.9 7.9E-24 1.7E-28 156.8 14.4 149 14-166 3-173 (194)
144 cd01879 FeoB Ferrous iron tran 99.9 1.7E-23 3.6E-28 149.9 15.5 147 18-173 1-155 (158)
145 TIGR02729 Obg_CgtA Obg family 99.9 2.6E-23 5.6E-28 164.6 17.8 160 13-174 157-328 (329)
146 TIGR03156 GTP_HflX GTP-binding 99.9 2.5E-23 5.5E-28 166.0 17.8 155 11-173 187-350 (351)
147 KOG0075 GTP-binding ADP-ribosy 99.9 6.5E-24 1.4E-28 143.2 8.7 154 13-175 20-182 (186)
148 PF02421 FeoB_N: Ferrous iron 99.9 2.2E-23 4.9E-28 146.7 11.8 148 14-170 1-156 (156)
149 cd01881 Obg_like The Obg-like 99.9 5.3E-23 1.1E-27 149.8 13.4 155 18-173 1-175 (176)
150 PF08477 Miro: Miro-like prote 99.9 5.9E-23 1.3E-27 140.4 12.3 114 15-129 1-119 (119)
151 TIGR00436 era GTP-binding prot 99.9 2.1E-22 4.5E-27 156.3 16.6 152 15-174 2-163 (270)
152 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.9E-22 4.1E-27 144.1 14.6 146 14-174 2-156 (157)
153 KOG3883 Ras family small GTPas 99.9 4.6E-22 1E-26 135.2 15.3 162 13-175 9-175 (198)
154 PRK15467 ethanolamine utilizat 99.9 1.6E-22 3.5E-27 144.8 13.7 139 15-176 3-148 (158)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.9 5.7E-22 1.2E-26 162.5 18.7 155 10-178 200-363 (442)
156 PRK03003 GTP-binding protein D 99.9 2.3E-22 5.1E-27 167.1 16.6 161 11-177 209-384 (472)
157 TIGR01393 lepA GTP-binding pro 99.9 4.7E-22 1E-26 168.4 18.4 157 12-174 2-179 (595)
158 cd01889 SelB_euk SelB subfamil 99.9 2.3E-22 5E-27 148.7 14.4 157 14-174 1-185 (192)
159 PRK12297 obgE GTPase CgtA; Rev 99.9 1.2E-21 2.7E-26 158.9 19.2 161 13-178 158-330 (424)
160 cd00881 GTP_translation_factor 99.9 3.2E-22 6.9E-27 147.3 14.3 154 15-174 1-186 (189)
161 PRK15494 era GTPase Era; Provi 99.9 5E-22 1.1E-26 158.4 16.1 154 11-174 50-215 (339)
162 cd01894 EngA1 EngA1 subfamily. 99.9 2.7E-22 5.9E-27 143.3 12.2 146 17-173 1-156 (157)
163 PRK11058 GTPase HflX; Provisio 99.9 1.5E-21 3.3E-26 159.2 17.8 158 13-176 197-363 (426)
164 PRK03003 GTP-binding protein D 99.9 6.6E-22 1.4E-26 164.4 15.9 155 12-176 37-200 (472)
165 PRK12296 obgE GTPase CgtA; Rev 99.9 1.6E-21 3.4E-26 160.2 17.7 164 13-179 159-344 (500)
166 KOG0071 GTP-binding ADP-ribosy 99.9 1.8E-21 3.9E-26 130.4 14.7 155 13-174 17-177 (180)
167 PRK05291 trmE tRNA modificatio 99.9 8.3E-22 1.8E-26 162.4 16.0 149 12-176 214-371 (449)
168 TIGR00487 IF-2 translation ini 99.9 2.3E-21 5E-26 163.5 18.3 154 11-172 85-247 (587)
169 TIGR03594 GTPase_EngA ribosome 99.9 1.5E-21 3.2E-26 161.3 16.3 160 11-177 170-346 (429)
170 PRK00454 engB GTP-binding prot 99.9 3.6E-21 7.7E-26 142.8 16.3 160 8-174 19-193 (196)
171 TIGR03598 GTPase_YsxC ribosome 99.9 1.7E-21 3.7E-26 142.5 14.1 150 8-164 13-179 (179)
172 TIGR00475 selB selenocysteine- 99.9 5E-21 1.1E-25 162.0 17.4 154 14-176 1-167 (581)
173 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 6.1E-22 1.3E-26 139.4 9.7 163 11-176 8-170 (216)
174 CHL00189 infB translation init 99.9 6.3E-21 1.4E-25 163.2 17.2 156 11-173 242-408 (742)
175 cd01895 EngA2 EngA2 subfamily. 99.9 6.1E-21 1.3E-25 138.4 14.8 154 13-172 2-172 (174)
176 PRK12298 obgE GTPase CgtA; Rev 99.9 1.5E-20 3.3E-25 151.7 18.2 162 13-176 159-334 (390)
177 cd01888 eIF2_gamma eIF2-gamma 99.9 7E-21 1.5E-25 141.9 14.8 159 14-174 1-198 (203)
178 cd04163 Era Era subfamily. Er 99.9 1.2E-20 2.7E-25 135.7 15.6 156 13-173 3-167 (168)
179 PRK05306 infB translation init 99.9 2.5E-20 5.4E-25 160.9 18.1 155 10-173 287-450 (787)
180 PRK00089 era GTPase Era; Revie 99.9 3.3E-20 7.1E-25 145.8 17.1 157 13-174 5-170 (292)
181 cd04105 SR_beta Signal recogni 99.9 5E-20 1.1E-24 137.1 17.2 117 15-132 2-123 (203)
182 KOG4423 GTP-binding protein-li 99.9 2.2E-23 4.7E-28 146.2 -0.8 169 9-177 21-196 (229)
183 PRK05433 GTP-binding protein L 99.9 2.6E-20 5.6E-25 158.0 17.4 159 11-175 5-184 (600)
184 TIGR00437 feoB ferrous iron tr 99.9 2E-20 4.3E-25 158.5 15.9 146 20-174 1-154 (591)
185 PRK00093 GTP-binding protein D 99.8 4.2E-20 9.1E-25 152.8 16.4 146 14-172 2-159 (435)
186 TIGR03594 GTPase_EngA ribosome 99.8 2.5E-20 5.5E-25 153.9 14.5 150 15-175 1-160 (429)
187 PF00009 GTP_EFTU: Elongation 99.8 8.7E-21 1.9E-25 139.8 10.4 159 12-174 2-186 (188)
188 cd00880 Era_like Era (E. coli 99.8 4E-20 8.7E-25 131.9 13.5 151 18-173 1-162 (163)
189 PRK00093 GTP-binding protein D 99.8 5.7E-20 1.2E-24 152.0 15.7 159 11-176 171-345 (435)
190 KOG0076 GTP-binding ADP-ribosy 99.8 3.1E-20 6.8E-25 129.0 9.7 160 12-177 16-189 (197)
191 PRK09554 feoB ferrous iron tra 99.8 3.5E-19 7.5E-24 154.4 18.1 153 13-174 3-167 (772)
192 COG1159 Era GTPase [General fu 99.8 2.1E-19 4.5E-24 136.2 14.5 158 12-174 5-171 (298)
193 PRK09518 bifunctional cytidyla 99.8 3.9E-19 8.5E-24 154.3 18.1 157 12-176 449-622 (712)
194 KOG0074 GTP-binding ADP-ribosy 99.8 1.1E-19 2.5E-24 122.0 11.3 156 8-172 12-176 (185)
195 PRK09518 bifunctional cytidyla 99.8 3.1E-19 6.8E-24 155.0 17.1 156 11-176 273-437 (712)
196 cd01896 DRG The developmentall 99.8 1E-18 2.2E-23 132.6 17.9 151 15-174 2-225 (233)
197 TIGR00483 EF-1_alpha translati 99.8 1.9E-19 4.1E-24 148.2 14.1 157 10-168 4-200 (426)
198 PRK10218 GTP-binding protein; 99.8 1.1E-18 2.3E-23 147.6 17.9 159 12-174 4-194 (607)
199 PRK12317 elongation factor 1-a 99.8 3.2E-19 6.9E-24 146.9 13.7 156 11-168 4-198 (425)
200 TIGR00491 aIF-2 translation in 99.8 9.3E-19 2E-23 147.6 16.8 156 14-176 5-217 (590)
201 PF10662 PduV-EutP: Ethanolami 99.8 8.6E-19 1.9E-23 120.8 13.2 136 14-171 2-142 (143)
202 cd01876 YihA_EngB The YihA (En 99.8 1.2E-18 2.5E-23 125.7 14.7 150 15-173 1-169 (170)
203 KOG0072 GTP-binding ADP-ribosy 99.8 6.8E-20 1.5E-24 123.4 7.4 159 12-175 17-179 (182)
204 TIGR01394 TypA_BipA GTP-bindin 99.8 7.1E-19 1.5E-23 148.9 15.4 157 14-174 2-190 (594)
205 cd04168 TetM_like Tet(M)-like 99.8 1.8E-18 3.8E-23 131.5 15.9 113 15-131 1-129 (237)
206 cd04166 CysN_ATPS CysN_ATPS su 99.8 5E-19 1.1E-23 132.4 12.6 149 15-166 1-185 (208)
207 COG2229 Predicted GTPase [Gene 99.8 8.2E-18 1.8E-22 118.5 17.4 159 9-173 6-176 (187)
208 TIGR03680 eif2g_arch translati 99.8 1E-18 2.3E-23 142.7 14.9 162 11-174 2-195 (406)
209 COG1160 Predicted GTPases [Gen 99.8 7.4E-19 1.6E-23 140.3 12.6 148 14-174 4-164 (444)
210 PRK10512 selenocysteinyl-tRNA- 99.8 3.2E-18 6.9E-23 145.5 17.2 155 15-174 2-165 (614)
211 COG1160 Predicted GTPases [Gen 99.8 2.2E-18 4.7E-23 137.6 14.6 160 12-176 177-352 (444)
212 cd01884 EF_Tu EF-Tu subfamily. 99.8 6.2E-18 1.3E-22 124.8 15.8 148 13-164 2-172 (195)
213 PRK04000 translation initiatio 99.8 2.5E-18 5.4E-23 140.4 14.9 163 9-174 5-200 (411)
214 PRK04004 translation initiatio 99.8 1.2E-17 2.6E-22 141.4 19.0 156 12-174 5-217 (586)
215 COG0486 ThdF Predicted GTPase 99.8 4.6E-18 9.9E-23 136.1 14.0 156 10-177 214-378 (454)
216 KOG1707 Predicted Ras related/ 99.8 1.1E-18 2.4E-23 141.9 10.1 166 9-176 5-176 (625)
217 PRK12736 elongation factor Tu; 99.8 1.8E-17 3.8E-22 135.0 15.5 148 10-161 9-179 (394)
218 cd04167 Snu114p Snu114p subfam 99.8 7.1E-18 1.5E-22 126.7 12.1 113 15-131 2-136 (213)
219 COG0218 Predicted GTPase [Gene 99.8 4.9E-17 1.1E-21 117.1 14.8 162 8-176 19-198 (200)
220 cd01883 EF1_alpha Eukaryotic e 99.8 6.9E-18 1.5E-22 127.2 11.0 147 15-164 1-194 (219)
221 PRK12735 elongation factor Tu; 99.8 3.3E-17 7.1E-22 133.5 15.5 160 9-172 8-200 (396)
222 TIGR00485 EF-Tu translation el 99.8 3E-17 6.6E-22 133.8 14.9 149 9-161 8-179 (394)
223 COG2262 HflX GTPases [General 99.8 6.9E-17 1.5E-21 127.3 16.2 167 8-181 187-362 (411)
224 KOG1489 Predicted GTP-binding 99.7 4.2E-17 9.1E-22 124.1 13.8 156 13-172 196-364 (366)
225 COG0370 FeoB Fe2+ transport sy 99.7 4.6E-17 1E-21 135.6 15.1 153 13-174 3-163 (653)
226 KOG1423 Ras-like GTPase ERA [C 99.7 1.2E-16 2.5E-21 121.2 14.9 163 7-174 66-270 (379)
227 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 3.3E-17 7.1E-22 123.0 11.9 158 15-176 1-177 (232)
228 CHL00071 tufA elongation facto 99.7 1.8E-16 4E-21 129.7 16.1 150 10-163 9-181 (409)
229 COG1084 Predicted GTPase [Gene 99.7 2.4E-16 5.2E-21 120.8 15.0 157 12-174 167-335 (346)
230 cd01885 EF2 EF2 (for archaea a 99.7 9.9E-17 2.1E-21 120.4 11.9 113 15-131 2-138 (222)
231 cd04165 GTPBP1_like GTPBP1-lik 99.7 3.6E-16 7.8E-21 117.8 14.6 154 15-172 1-220 (224)
232 cd04169 RF3 RF3 subfamily. Pe 99.7 5.1E-16 1.1E-20 120.0 15.0 116 14-133 3-138 (267)
233 cd04104 p47_IIGP_like p47 (47- 99.7 1.5E-15 3.2E-20 112.7 16.2 162 13-182 1-191 (197)
234 COG0532 InfB Translation initi 99.7 1.7E-15 3.7E-20 123.1 17.7 158 13-177 5-172 (509)
235 cd01850 CDC_Septin CDC/Septin. 99.7 4.8E-16 1E-20 120.6 13.2 142 13-159 4-186 (276)
236 TIGR02034 CysN sulfate adenyly 99.7 4.9E-16 1.1E-20 127.0 13.9 149 14-165 1-187 (406)
237 PLN03126 Elongation factor Tu; 99.7 1.2E-15 2.6E-20 126.3 16.2 150 9-162 77-249 (478)
238 PRK00741 prfC peptide chain re 99.7 8.7E-16 1.9E-20 128.6 15.6 119 9-131 6-144 (526)
239 cd01886 EF-G Elongation factor 99.7 2.8E-16 6E-21 121.5 11.6 114 15-132 1-130 (270)
240 COG0536 Obg Predicted GTPase [ 99.7 7.9E-16 1.7E-20 118.6 13.8 165 13-179 159-337 (369)
241 cd04170 EF-G_bact Elongation f 99.7 1.4E-16 3E-21 123.7 9.9 147 15-170 1-168 (268)
242 PRK05124 cysN sulfate adenylyl 99.7 5.9E-16 1.3E-20 128.5 14.0 154 10-166 24-216 (474)
243 PRK00049 elongation factor Tu; 99.7 1.9E-15 4.1E-20 123.2 16.1 149 9-161 8-179 (396)
244 KOG0462 Elongation factor-type 99.7 7.2E-16 1.6E-20 124.9 12.8 162 9-174 56-234 (650)
245 PLN00043 elongation factor 1-a 99.7 2.2E-15 4.8E-20 124.1 16.1 151 11-165 5-203 (447)
246 PRK13351 elongation factor G; 99.7 9.1E-16 2E-20 133.3 14.2 120 9-132 4-139 (687)
247 cd01899 Ygr210 Ygr210 subfamil 99.7 2E-15 4.4E-20 118.9 14.8 81 16-96 1-110 (318)
248 PRK05506 bifunctional sulfate 99.7 2.8E-15 6.1E-20 129.0 15.0 154 9-165 20-211 (632)
249 TIGR00503 prfC peptide chain r 99.7 6.4E-15 1.4E-19 123.5 16.7 119 9-131 7-145 (527)
250 PLN03127 Elongation factor Tu; 99.7 5.8E-15 1.3E-19 121.6 15.4 159 10-172 58-249 (447)
251 PTZ00327 eukaryotic translatio 99.6 3.4E-15 7.3E-20 122.9 13.7 164 9-174 30-232 (460)
252 PTZ00141 elongation factor 1- 99.6 8.4E-15 1.8E-19 120.8 15.5 152 11-165 5-203 (446)
253 COG0481 LepA Membrane GTPase L 99.6 6.9E-15 1.5E-19 117.6 14.3 160 9-174 5-185 (603)
254 COG1163 DRG Predicted GTPase [ 99.6 9.4E-15 2E-19 111.9 14.3 158 8-174 58-288 (365)
255 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 1.8E-14 3.9E-19 106.8 15.1 158 14-175 1-184 (196)
256 KOG1145 Mitochondrial translat 99.6 2E-14 4.3E-19 116.7 16.1 156 11-174 151-315 (683)
257 KOG1191 Mitochondrial GTPase [ 99.6 1.4E-15 3E-20 122.0 9.1 168 9-178 264-453 (531)
258 PF01926 MMR_HSR1: 50S ribosom 99.6 2.1E-14 4.7E-19 97.5 13.3 106 15-127 1-116 (116)
259 PRK12739 elongation factor G; 99.6 1.5E-14 3.2E-19 125.7 15.2 117 10-132 5-139 (691)
260 PRK09602 translation-associate 99.6 5E-14 1.1E-18 114.2 16.2 83 14-96 2-113 (396)
261 TIGR00484 EF-G translation elo 99.6 2.1E-14 4.6E-19 124.7 14.0 121 9-133 6-142 (689)
262 KOG0077 Vesicle coat complex C 99.6 6.5E-15 1.4E-19 101.9 8.5 153 13-172 20-190 (193)
263 COG3596 Predicted GTPase [Gene 99.6 1.7E-14 3.6E-19 108.4 10.6 162 10-175 36-222 (296)
264 COG4917 EutP Ethanolamine util 99.6 1.9E-14 4E-19 95.1 9.5 137 14-172 2-143 (148)
265 KOG1490 GTP-binding protein CR 99.6 1.8E-14 3.9E-19 115.8 11.3 172 11-185 166-351 (620)
266 PRK00007 elongation factor G; 99.6 7.6E-14 1.7E-18 121.2 16.1 117 9-131 6-140 (693)
267 COG5256 TEF1 Translation elong 99.6 8.7E-14 1.9E-18 110.0 12.6 155 11-166 5-202 (428)
268 PRK09866 hypothetical protein; 99.6 4.2E-13 9.1E-18 112.1 17.1 108 63-172 231-350 (741)
269 PF09439 SRPRB: Signal recogni 99.5 8.3E-15 1.8E-19 105.6 5.8 115 14-132 4-126 (181)
270 KOG3905 Dynein light intermedi 99.5 8.8E-13 1.9E-17 101.1 15.9 163 12-177 51-292 (473)
271 PRK12740 elongation factor G; 99.5 2.6E-13 5.5E-18 117.9 13.8 107 19-131 1-125 (668)
272 PF05783 DLIC: Dynein light in 99.5 9.6E-13 2.1E-17 108.3 15.9 164 11-177 23-266 (472)
273 smart00010 small_GTPase Small 99.5 3.7E-13 8.1E-18 92.2 11.3 114 14-164 1-115 (124)
274 TIGR00991 3a0901s02IAP34 GTP-b 99.5 9.4E-13 2E-17 102.2 13.5 127 9-137 34-172 (313)
275 TIGR00490 aEF-2 translation el 99.5 1.9E-13 4.1E-18 119.1 10.7 119 10-132 16-152 (720)
276 TIGR00157 ribosome small subun 99.5 2.6E-13 5.7E-18 103.7 9.3 96 73-172 24-120 (245)
277 COG2895 CysN GTPases - Sulfate 99.5 1.2E-12 2.5E-17 101.5 12.8 153 10-165 3-193 (431)
278 KOG0090 Signal recognition par 99.5 7.8E-13 1.7E-17 95.6 11.0 114 13-131 38-158 (238)
279 TIGR00101 ureG urease accessor 99.5 1.6E-12 3.5E-17 96.3 12.8 102 62-174 92-195 (199)
280 cd01853 Toc34_like Toc34-like 99.5 1.6E-12 3.5E-17 99.3 12.8 122 8-132 26-163 (249)
281 PRK14845 translation initiatio 99.5 3.1E-12 6.6E-17 113.7 16.2 145 24-175 472-673 (1049)
282 PTZ00258 GTP-binding protein; 99.4 5E-12 1.1E-16 101.7 15.0 85 11-95 19-125 (390)
283 PRK13768 GTPase; Provisional 99.4 1.5E-12 3.2E-17 100.1 11.2 111 63-174 98-246 (253)
284 KOG1532 GTPase XAB1, interacts 99.4 2.2E-12 4.7E-17 96.9 11.5 166 10-177 16-266 (366)
285 KOG3886 GTP-binding protein [S 99.4 2.6E-13 5.6E-18 99.3 6.3 147 13-160 4-164 (295)
286 PF04548 AIG1: AIG1 family; I 99.4 2.8E-12 6.1E-17 96.1 12.1 157 14-174 1-185 (212)
287 cd00066 G-alpha G protein alph 99.4 1E-11 2.2E-16 98.5 14.8 119 60-178 159-314 (317)
288 COG5257 GCD11 Translation init 99.4 1.4E-12 3.1E-17 99.8 9.3 163 11-175 8-202 (415)
289 COG1217 TypA Predicted membran 99.4 3.6E-12 7.7E-17 102.1 11.3 159 12-174 4-194 (603)
290 PRK09601 GTP-binding protein Y 99.4 3.3E-11 7.1E-16 96.0 16.2 83 14-96 3-107 (364)
291 PRK07560 elongation factor EF- 99.4 8.3E-12 1.8E-16 109.2 13.0 118 10-131 17-152 (731)
292 PLN00116 translation elongatio 99.4 4.9E-12 1.1E-16 112.0 11.6 119 9-131 15-163 (843)
293 PTZ00416 elongation factor 2; 99.4 7.7E-12 1.7E-16 110.6 11.6 118 10-131 16-157 (836)
294 KOG1707 Predicted Ras related/ 99.3 3.4E-11 7.3E-16 98.9 14.2 166 5-175 417-583 (625)
295 PF03029 ATP_bind_1: Conserved 99.3 2.4E-12 5.3E-17 97.7 6.2 111 63-173 92-235 (238)
296 cd01882 BMS1 Bms1. Bms1 is an 99.3 4.5E-11 9.8E-16 90.4 13.1 139 11-161 37-182 (225)
297 COG0378 HypB Ni2+-binding GTPa 99.3 5.1E-12 1.1E-16 90.7 7.3 149 13-174 13-200 (202)
298 TIGR00073 hypB hydrogenase acc 99.3 1.2E-11 2.5E-16 92.5 9.4 56 118-173 148-205 (207)
299 KOG0461 Selenocysteine-specifi 99.3 1.4E-10 3E-15 90.0 14.7 164 13-180 7-194 (522)
300 KOG0705 GTPase-activating prot 99.3 1.9E-11 4E-16 99.6 10.2 171 11-188 28-202 (749)
301 KOG0458 Elongation factor 1 al 99.3 5.7E-11 1.2E-15 97.6 12.6 157 8-166 172-373 (603)
302 PRK09435 membrane ATPase/prote 99.3 6.3E-11 1.4E-15 93.7 12.5 106 61-177 148-262 (332)
303 KOG1144 Translation initiation 99.3 3.2E-11 7E-16 101.3 10.5 164 13-183 475-695 (1064)
304 cd01900 YchF YchF subfamily. 99.3 1E-10 2.2E-15 90.3 12.5 80 16-95 1-102 (274)
305 PF00735 Septin: Septin; Inte 99.3 1.3E-10 2.8E-15 90.4 12.0 139 13-156 4-182 (281)
306 TIGR02836 spore_IV_A stage IV 99.2 4.6E-10 9.9E-15 89.8 14.1 156 11-171 15-233 (492)
307 PF00350 Dynamin_N: Dynamin fa 99.2 1.6E-10 3.6E-15 83.4 10.8 63 63-128 102-168 (168)
308 KOG0082 G-protein alpha subuni 99.2 2.2E-09 4.7E-14 84.7 15.5 122 60-181 193-350 (354)
309 COG0480 FusA Translation elong 99.2 2.7E-10 5.8E-15 98.0 11.1 118 10-131 7-141 (697)
310 PF05049 IIGP: Interferon-indu 99.2 1.2E-10 2.5E-15 93.0 8.3 163 11-181 33-224 (376)
311 COG3276 SelB Selenocysteine-sp 99.2 4.9E-10 1.1E-14 89.6 11.5 155 15-175 2-162 (447)
312 COG0050 TufB GTPases - transla 99.2 4.6E-10 1E-14 85.3 10.7 166 10-180 9-198 (394)
313 TIGR00750 lao LAO/AO transport 99.2 5.6E-10 1.2E-14 88.0 11.4 104 61-175 126-238 (300)
314 TIGR00993 3a0901s04IAP86 chlor 99.1 3E-09 6.4E-14 89.8 15.7 123 8-132 113-250 (763)
315 KOG0410 Predicted GTP binding 99.1 1.2E-10 2.6E-15 89.6 6.8 158 8-177 173-343 (410)
316 smart00053 DYNc Dynamin, GTPas 99.1 1.5E-09 3.3E-14 82.2 12.4 68 62-132 125-206 (240)
317 KOG0468 U5 snRNP-specific prot 99.1 9.3E-10 2E-14 91.8 11.0 118 9-130 124-261 (971)
318 COG0012 Predicted GTPase, prob 99.1 3.3E-09 7.2E-14 83.7 13.1 84 13-96 2-108 (372)
319 PRK10463 hydrogenase nickel in 99.1 2E-10 4.4E-15 88.7 5.5 55 119-173 231-287 (290)
320 KOG1486 GTP-binding protein DR 99.0 1.3E-08 2.8E-13 76.0 13.9 90 10-101 59-155 (364)
321 COG4108 PrfC Peptide chain rel 99.0 3.2E-09 6.9E-14 84.9 11.3 119 10-132 9-147 (528)
322 cd01855 YqeH YqeH. YqeH is an 99.0 2.2E-09 4.8E-14 79.2 9.8 93 75-174 24-124 (190)
323 KOG1954 Endocytosis/signaling 99.0 1.8E-09 4E-14 84.6 9.6 126 6-134 51-227 (532)
324 KOG3887 Predicted small GTPase 99.0 1.8E-09 3.9E-14 80.0 8.7 160 13-177 27-204 (347)
325 COG5019 CDC3 Septin family pro 99.0 6.4E-09 1.4E-13 81.6 12.1 138 12-154 22-200 (373)
326 cd01859 MJ1464 MJ1464. This f 99.0 1.3E-09 2.8E-14 77.8 7.7 95 75-175 2-96 (156)
327 smart00275 G_alpha G protein a 99.0 2.2E-08 4.8E-13 80.2 15.0 119 61-179 183-338 (342)
328 PRK12289 GTPase RsgA; Reviewed 99.0 2.7E-09 5.9E-14 85.4 9.4 90 78-172 82-172 (352)
329 cd01854 YjeQ_engC YjeQ/EngC. 99.0 3.5E-09 7.5E-14 83.0 9.1 88 80-172 73-161 (287)
330 PF03308 ArgK: ArgK protein; 99.0 9.2E-10 2E-14 83.0 5.5 151 12-176 28-231 (266)
331 KOG1547 Septin CDC10 and relat 99.0 2.9E-08 6.2E-13 73.7 12.6 152 13-169 46-237 (336)
332 PRK12288 GTPase RsgA; Reviewed 98.9 1E-08 2.2E-13 82.1 10.2 87 83-172 118-205 (347)
333 PRK00098 GTPase RsgA; Reviewed 98.9 6.3E-09 1.4E-13 81.9 8.5 86 82-171 77-163 (298)
334 KOG2655 Septin family protein 98.9 2.9E-08 6.2E-13 78.5 11.5 143 13-160 21-202 (366)
335 COG1703 ArgK Putative periplas 98.9 4.5E-08 9.8E-13 75.1 11.9 154 12-176 50-255 (323)
336 KOG2486 Predicted GTPase [Gene 98.9 6.8E-09 1.5E-13 78.5 7.0 159 7-172 130-313 (320)
337 TIGR03597 GTPase_YqeH ribosome 98.8 3.5E-08 7.5E-13 79.8 9.6 94 72-172 50-150 (360)
338 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.5E-08 3.3E-13 71.1 6.1 54 15-72 85-138 (141)
339 KOG0460 Mitochondrial translat 98.8 8.1E-08 1.8E-12 74.7 10.0 145 11-158 52-218 (449)
340 cd04178 Nucleostemin_like Nucl 98.8 1.4E-08 3E-13 73.5 5.5 57 11-71 115-171 (172)
341 cd01858 NGP_1 NGP-1. Autoanti 98.7 4.1E-08 8.9E-13 70.1 7.0 56 12-71 101-156 (157)
342 KOG0467 Translation elongation 98.7 6E-08 1.3E-12 82.3 7.9 118 9-130 5-136 (887)
343 COG5258 GTPBP1 GTPase [General 98.7 7.2E-07 1.6E-11 70.7 13.2 158 9-170 113-334 (527)
344 TIGR03348 VI_IcmF type VI secr 98.7 4.4E-07 9.5E-12 83.6 12.8 112 16-132 114-257 (1169)
345 COG1618 Predicted nucleotide k 98.6 8.1E-06 1.8E-10 57.3 15.6 146 12-174 4-175 (179)
346 KOG0466 Translation initiation 98.6 2.6E-08 5.6E-13 76.4 3.7 159 10-174 35-240 (466)
347 COG5192 BMS1 GTP-binding prote 98.6 4.6E-07 9.9E-12 75.1 10.8 153 8-172 64-224 (1077)
348 cd01858 NGP_1 NGP-1. Autoanti 98.6 2.4E-07 5.1E-12 66.2 8.2 87 82-173 5-93 (157)
349 cd01856 YlqF YlqF. Proteins o 98.6 1.3E-07 2.9E-12 68.5 6.8 58 11-72 113-170 (171)
350 cd01859 MJ1464 MJ1464. This f 98.6 1.6E-07 3.5E-12 66.9 6.9 56 12-71 100-155 (156)
351 TIGR03596 GTPase_YlqF ribosome 98.6 2E-07 4.2E-12 72.8 7.2 58 11-72 116-173 (276)
352 KOG0448 Mitofusin 1 GTPase, in 98.6 2.2E-06 4.7E-11 72.5 13.6 144 12-159 108-310 (749)
353 PRK09563 rbgA GTPase YlqF; Rev 98.6 2.6E-07 5.7E-12 72.5 7.9 58 11-72 119-176 (287)
354 TIGR00092 GTP-binding protein 98.6 2.9E-07 6.4E-12 73.7 8.1 83 14-96 3-108 (368)
355 cd01849 YlqF_related_GTPase Yl 98.6 4.9E-07 1.1E-11 64.4 8.5 85 87-175 1-85 (155)
356 KOG1143 Predicted translation 98.6 3E-07 6.5E-12 72.6 7.8 157 6-166 160-379 (591)
357 cd01856 YlqF YlqF. Proteins o 98.6 3.7E-07 8E-12 66.2 7.7 98 70-175 3-101 (171)
358 KOG1491 Predicted GTP-binding 98.6 1.7E-07 3.7E-12 72.9 6.1 85 12-96 19-125 (391)
359 cd01855 YqeH YqeH. YqeH is an 98.5 1.8E-07 3.8E-12 69.0 5.8 56 13-71 127-189 (190)
360 KOG4273 Uncharacterized conser 98.5 1.5E-06 3.3E-11 65.1 10.4 160 14-177 5-224 (418)
361 PF03193 DUF258: Protein of un 98.5 1.1E-07 2.5E-12 67.4 4.0 60 14-76 36-101 (161)
362 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 5.5E-07 1.2E-11 63.1 7.5 76 80-161 6-83 (141)
363 TIGR03596 GTPase_YlqF ribosome 98.5 8.6E-07 1.9E-11 69.2 9.2 99 70-176 5-104 (276)
364 KOG0464 Elongation factor G [T 98.5 2E-07 4.3E-12 74.5 4.8 155 10-170 34-206 (753)
365 KOG0447 Dynamin-like GTP bindi 98.5 2.1E-05 4.6E-10 65.3 16.5 150 9-160 304-526 (980)
366 COG1161 Predicted GTPases [Gen 98.5 3.6E-07 7.9E-12 72.7 6.2 57 12-72 131-187 (322)
367 cd01851 GBP Guanylate-binding 98.5 5.2E-06 1.1E-10 62.8 12.0 86 11-97 5-103 (224)
368 PRK01889 GTPase RsgA; Reviewed 98.4 1.2E-06 2.5E-11 70.8 8.7 83 83-171 110-193 (356)
369 KOG0465 Mitochondrial elongati 98.4 1.6E-06 3.5E-11 72.3 8.7 118 9-130 35-168 (721)
370 cd01849 YlqF_related_GTPase Yl 98.4 1E-06 2.2E-11 62.7 6.5 56 11-71 98-154 (155)
371 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.8E-06 4E-11 67.8 8.5 100 69-176 7-107 (287)
372 PRK13796 GTPase YqeH; Provisio 98.4 3.6E-06 7.7E-11 68.3 10.2 94 73-173 57-157 (365)
373 cd03112 CobW_like The function 98.4 3.2E-06 6.9E-11 60.4 8.2 64 61-130 86-158 (158)
374 COG3523 IcmF Type VI protein s 98.3 7.3E-06 1.6E-10 74.3 11.0 111 16-132 128-270 (1188)
375 PRK10416 signal recognition pa 98.3 8E-06 1.7E-10 64.9 9.8 143 12-167 113-302 (318)
376 PRK12288 GTPase RsgA; Reviewed 98.3 2.1E-06 4.5E-11 69.0 6.4 58 16-76 208-271 (347)
377 KOG1487 GTP-binding protein DR 98.3 6.7E-06 1.4E-10 62.0 8.5 90 12-103 58-154 (358)
378 TIGR00064 ftsY signal recognit 98.3 6.5E-06 1.4E-10 64.0 8.7 94 61-167 154-260 (272)
379 PRK12289 GTPase RsgA; Reviewed 98.2 1.8E-06 4E-11 69.3 5.5 59 15-76 174-238 (352)
380 PRK14974 cell division protein 98.2 1.1E-05 2.4E-10 64.3 9.8 94 62-168 223-323 (336)
381 COG1162 Predicted GTPases [Gen 98.2 2.1E-06 4.5E-11 66.6 5.2 59 15-76 166-230 (301)
382 PF09547 Spore_IV_A: Stage IV 98.2 3.4E-05 7.3E-10 62.4 12.0 156 11-171 15-233 (492)
383 KOG1424 Predicted GTP-binding 98.2 2.3E-06 4.9E-11 70.2 5.4 57 12-72 313-369 (562)
384 PF00503 G-alpha: G-protein al 98.2 1.5E-05 3.2E-10 65.4 9.2 113 61-173 235-388 (389)
385 COG1162 Predicted GTPases [Gen 98.1 2.9E-05 6.4E-10 60.3 10.0 88 82-172 76-164 (301)
386 PRK13796 GTPase YqeH; Provisio 98.1 3.8E-06 8.3E-11 68.1 5.4 56 14-72 161-220 (365)
387 TIGR00157 ribosome small subun 98.1 5.2E-06 1.1E-10 63.6 5.5 58 14-75 121-184 (245)
388 TIGR03597 GTPase_YqeH ribosome 98.1 7.6E-06 1.6E-10 66.3 6.5 57 14-73 155-215 (360)
389 KOG0085 G protein subunit Galp 98.1 1.2E-05 2.6E-10 59.7 6.6 121 60-180 197-354 (359)
390 PF03266 NTPase_1: NTPase; In 98.1 1.9E-05 4.1E-10 56.9 7.4 136 15-164 1-164 (168)
391 KOG3859 Septins (P-loop GTPase 98.0 2.5E-05 5.5E-10 59.6 7.5 114 13-131 42-189 (406)
392 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.5E-05 3.2E-10 62.6 6.1 60 14-76 162-227 (287)
393 TIGR01425 SRP54_euk signal rec 98.0 7.3E-05 1.6E-09 61.4 10.1 134 13-157 100-274 (429)
394 PRK00098 GTPase RsgA; Reviewed 98.0 1.7E-05 3.8E-10 62.6 5.8 57 15-74 166-228 (298)
395 PRK12727 flagellar biosynthesi 98.0 0.00037 8E-09 58.6 13.7 157 12-179 349-544 (559)
396 cd03115 SRP The signal recogni 97.9 8.7E-05 1.9E-09 53.8 8.7 82 62-153 83-170 (173)
397 PRK13695 putative NTPase; Prov 97.9 0.00051 1.1E-08 49.8 12.6 23 14-36 1-23 (174)
398 COG0523 Putative GTPases (G3E 97.9 0.0003 6.5E-09 55.9 12.0 97 62-167 85-193 (323)
399 KOG0469 Elongation factor 2 [T 97.9 6.9E-05 1.5E-09 61.7 8.0 130 10-143 16-176 (842)
400 PRK14722 flhF flagellar biosyn 97.9 0.00019 4.1E-09 58.1 10.5 143 13-159 137-318 (374)
401 PF06858 NOG1: Nucleolar GTP-b 97.9 7.1E-05 1.5E-09 43.1 5.8 45 84-129 12-58 (58)
402 PRK11537 putative GTP-binding 97.9 0.00034 7.5E-09 55.7 11.8 95 62-167 91-196 (318)
403 PF11111 CENP-M: Centromere pr 97.8 0.0018 3.9E-08 46.2 13.5 142 7-172 9-150 (176)
404 PF00448 SRP54: SRP54-type pro 97.8 0.00052 1.1E-08 50.8 10.6 135 14-159 2-177 (196)
405 cd03114 ArgK-like The function 97.7 0.00012 2.6E-09 51.7 6.5 58 61-129 91-148 (148)
406 KOG2484 GTPase [General functi 97.7 3.3E-05 7.1E-10 61.7 3.9 62 7-72 246-307 (435)
407 PF02492 cobW: CobW/HypB/UreG, 97.7 7.7E-05 1.7E-09 54.4 5.5 81 61-148 84-170 (178)
408 KOG0463 GTP-binding protein GP 97.7 0.00056 1.2E-08 54.6 10.2 151 11-166 131-349 (641)
409 cd02042 ParA ParA and ParB of 97.7 0.00038 8.3E-09 45.8 8.1 82 16-109 2-84 (104)
410 TIGR00959 ffh signal recogniti 97.7 0.00023 5E-09 58.8 8.4 86 62-157 183-274 (428)
411 KOG0459 Polypeptide release fa 97.7 9.7E-05 2.1E-09 59.2 5.6 157 9-168 75-279 (501)
412 cd02038 FleN-like FleN is a me 97.7 0.00021 4.6E-09 49.9 6.8 107 17-131 4-110 (139)
413 PRK10867 signal recognition pa 97.6 0.00045 9.8E-09 57.1 9.4 86 62-157 184-275 (433)
414 PRK14721 flhF flagellar biosyn 97.6 0.00074 1.6E-08 55.6 10.5 135 13-158 191-362 (420)
415 cd00009 AAA The AAA+ (ATPases 97.6 0.00056 1.2E-08 47.4 8.7 26 13-38 19-44 (151)
416 PRK00771 signal recognition pa 97.6 0.00048 1E-08 57.1 9.2 137 11-157 93-267 (437)
417 PRK11889 flhF flagellar biosyn 97.6 0.0015 3.3E-08 53.1 11.3 136 13-158 241-413 (436)
418 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00099 2.2E-08 42.8 8.7 69 16-98 2-71 (99)
419 PRK05703 flhF flagellar biosyn 97.5 0.0012 2.6E-08 54.7 10.3 88 62-159 300-394 (424)
420 KOG0099 G protein subunit Galp 97.5 0.0014 3E-08 49.9 9.4 120 60-179 200-373 (379)
421 KOG1534 Putative transcription 97.5 0.00088 1.9E-08 49.3 8.0 110 63-174 99-250 (273)
422 PRK12726 flagellar biosynthesi 97.5 0.0018 3.9E-08 52.4 10.5 138 12-159 205-379 (407)
423 PF13401 AAA_22: AAA domain; P 97.5 0.00012 2.7E-09 50.2 3.4 24 14-37 5-28 (131)
424 TIGR02475 CobW cobalamin biosy 97.5 0.0028 6.2E-08 51.0 11.4 99 62-169 93-224 (341)
425 PF00004 AAA: ATPase family as 97.4 0.00072 1.6E-08 46.3 6.9 22 16-37 1-22 (132)
426 cd03111 CpaE_like This protein 97.4 0.00094 2E-08 44.3 7.2 100 19-127 6-106 (106)
427 KOG2485 Conserved ATP/GTP bind 97.4 0.00017 3.6E-09 56.0 3.7 61 11-72 141-206 (335)
428 COG1419 FlhF Flagellar GTP-bin 97.4 0.0012 2.6E-08 53.5 8.4 156 13-178 203-397 (407)
429 COG3640 CooC CO dehydrogenase 97.4 0.0029 6.2E-08 47.5 9.6 60 82-150 152-211 (255)
430 PRK06995 flhF flagellar biosyn 97.3 0.012 2.7E-07 49.4 14.1 134 14-158 257-427 (484)
431 KOG3929 Uncharacterized conser 97.3 7.1E-05 1.5E-09 56.6 0.9 163 10-175 42-252 (363)
432 PRK12724 flagellar biosynthesi 97.3 0.0022 4.8E-08 52.6 9.6 137 14-160 224-397 (432)
433 PF13207 AAA_17: AAA domain; P 97.3 0.0002 4.4E-09 48.5 2.9 22 15-36 1-22 (121)
434 PRK08118 topology modulation p 97.3 0.0002 4.4E-09 51.6 3.0 24 14-37 2-25 (167)
435 COG0563 Adk Adenylate kinase a 97.3 0.0002 4.3E-09 52.1 2.8 23 14-36 1-23 (178)
436 TIGR00150 HI0065_YjeE ATPase, 97.3 0.0015 3.2E-08 45.1 6.7 24 15-38 24-47 (133)
437 PF05621 TniB: Bacterial TniB 97.3 0.0021 4.7E-08 50.2 8.3 106 9-128 57-190 (302)
438 PF03215 Rad17: Rad17 cell cyc 97.3 0.0021 4.6E-08 54.5 8.9 23 15-37 47-69 (519)
439 PRK14723 flhF flagellar biosyn 97.3 0.0066 1.4E-07 53.5 12.1 138 14-159 186-360 (767)
440 cd03110 Fer4_NifH_child This p 97.2 0.0039 8.4E-08 45.3 9.2 85 60-153 91-175 (179)
441 PRK07261 topology modulation p 97.2 0.00027 5.9E-09 51.2 3.0 22 15-36 2-23 (171)
442 PF13671 AAA_33: AAA domain; P 97.2 0.00026 5.6E-09 49.4 2.8 20 16-35 2-21 (143)
443 PRK06731 flhF flagellar biosyn 97.2 0.002 4.4E-08 50.0 7.7 135 14-158 76-247 (270)
444 cd03222 ABC_RNaseL_inhibitor T 97.2 0.0057 1.2E-07 44.5 9.3 88 14-112 26-118 (177)
445 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.01 2.2E-07 41.7 10.3 23 15-37 28-50 (144)
446 PF13555 AAA_29: P-loop contai 97.1 0.00052 1.1E-08 40.5 2.9 21 15-35 25-45 (62)
447 PRK12723 flagellar biosynthesi 97.1 0.013 2.8E-07 48.0 11.9 136 13-158 174-348 (388)
448 PRK10646 ADP-binding protein; 97.1 0.0047 1E-07 43.6 7.9 36 15-50 30-65 (153)
449 PF13521 AAA_28: AAA domain; P 97.1 0.00035 7.5E-09 50.1 2.2 22 15-36 1-22 (163)
450 PRK04195 replication factor C 97.1 0.009 2E-07 50.6 11.0 25 13-37 39-63 (482)
451 COG1116 TauB ABC-type nitrate/ 97.1 0.00047 1E-08 52.1 2.9 22 16-37 32-53 (248)
452 KOG1970 Checkpoint RAD17-RFC c 97.1 0.0076 1.6E-07 50.6 9.9 22 15-36 112-133 (634)
453 cd02019 NK Nucleoside/nucleoti 97.0 0.00062 1.3E-08 41.4 2.8 21 16-36 2-22 (69)
454 COG0194 Gmk Guanylate kinase [ 97.0 0.00036 7.9E-09 50.4 1.9 24 14-37 5-28 (191)
455 KOG0780 Signal recognition par 97.0 0.0022 4.8E-08 51.5 6.3 88 13-100 101-228 (483)
456 PF04665 Pox_A32: Poxvirus A32 97.0 0.0006 1.3E-08 51.8 3.1 33 4-36 4-36 (241)
457 PF05729 NACHT: NACHT domain 97.0 0.0033 7.1E-08 44.7 6.5 24 16-39 3-26 (166)
458 COG0802 Predicted ATPase or ki 96.9 0.0046 1E-07 43.2 6.7 37 14-50 26-62 (149)
459 PRK06217 hypothetical protein; 96.9 0.00078 1.7E-08 49.3 3.1 23 14-36 2-24 (183)
460 PRK14738 gmk guanylate kinase; 96.9 0.0016 3.5E-08 48.6 4.8 25 12-36 12-36 (206)
461 PRK14737 gmk guanylate kinase; 96.9 0.00066 1.4E-08 49.8 2.6 24 14-37 5-28 (186)
462 KOG1533 Predicted GTPase [Gene 96.9 0.0023 5.1E-08 47.9 5.1 67 63-131 98-176 (290)
463 PRK03839 putative kinase; Prov 96.9 0.0009 1.9E-08 48.8 2.9 22 15-36 2-23 (180)
464 COG1136 SalX ABC-type antimicr 96.9 0.0009 2E-08 50.3 2.8 23 15-37 33-55 (226)
465 COG1126 GlnQ ABC-type polar am 96.9 0.0014 3.1E-08 48.6 3.7 23 15-37 30-52 (240)
466 cd01131 PilT Pilus retraction 96.8 0.0074 1.6E-07 44.8 7.6 22 16-37 4-25 (198)
467 PF00005 ABC_tran: ABC transpo 96.8 0.001 2.3E-08 46.0 3.0 23 15-37 13-35 (137)
468 smart00382 AAA ATPases associa 96.8 0.0011 2.5E-08 45.4 3.2 27 14-40 3-29 (148)
469 PF02367 UPF0079: Uncharacteri 96.8 0.002 4.3E-08 43.8 4.1 24 14-37 16-39 (123)
470 KOG2423 Nucleolar GTPase [Gene 96.8 0.00043 9.2E-09 55.6 0.9 60 8-71 302-361 (572)
471 cd00071 GMPK Guanosine monopho 96.8 0.0011 2.4E-08 46.1 2.9 21 16-36 2-22 (137)
472 PRK14530 adenylate kinase; Pro 96.8 0.0011 2.3E-08 49.9 3.0 22 14-35 4-25 (215)
473 PRK10078 ribose 1,5-bisphospho 96.8 0.0012 2.6E-08 48.5 3.1 22 15-36 4-25 (186)
474 PF13238 AAA_18: AAA domain; P 96.8 0.001 2.3E-08 45.3 2.7 21 16-36 1-21 (129)
475 KOG3347 Predicted nucleotide k 96.8 0.001 2.3E-08 46.2 2.4 26 10-35 4-29 (176)
476 cd02036 MinD Bacterial cell di 96.8 0.029 6.2E-07 40.5 10.3 84 63-153 64-147 (179)
477 PF03205 MobB: Molybdopterin g 96.8 0.0012 2.7E-08 46.1 2.9 23 15-37 2-24 (140)
478 PRK05416 glmZ(sRNA)-inactivati 96.8 0.035 7.6E-07 43.7 11.2 74 14-113 7-82 (288)
479 PRK01889 GTPase RsgA; Reviewed 96.7 0.0017 3.7E-08 52.7 3.9 25 14-38 196-220 (356)
480 PRK14532 adenylate kinase; Pro 96.7 0.0013 2.8E-08 48.3 2.9 21 15-35 2-22 (188)
481 PRK13949 shikimate kinase; Pro 96.7 0.0014 3.1E-08 47.3 3.0 22 15-36 3-24 (169)
482 PF07728 AAA_5: AAA domain (dy 96.7 0.0012 2.7E-08 45.8 2.6 23 15-37 1-23 (139)
483 TIGR02322 phosphon_PhnN phosph 96.7 0.0013 2.8E-08 47.8 2.8 22 15-36 3-24 (179)
484 PLN02200 adenylate kinase fami 96.7 0.0022 4.8E-08 48.9 4.1 24 12-35 42-65 (234)
485 TIGR03263 guanyl_kin guanylate 96.7 0.0015 3.2E-08 47.6 2.9 23 15-37 3-25 (180)
486 PRK14531 adenylate kinase; Pro 96.7 0.0015 3.3E-08 47.8 3.0 23 14-36 3-25 (183)
487 cd00820 PEPCK_HprK Phosphoenol 96.7 0.0016 3.4E-08 43.1 2.7 21 14-34 16-36 (107)
488 COG1161 Predicted GTPases [Gen 96.7 0.0073 1.6E-07 48.3 7.0 96 66-168 14-110 (322)
489 COG3839 MalK ABC-type sugar tr 96.7 0.0014 3.1E-08 52.2 2.9 22 16-37 32-53 (338)
490 KOG2203 GTP-binding protein [G 96.7 0.0019 4.2E-08 54.0 3.6 59 13-72 37-98 (772)
491 PRK00411 cdc6 cell division co 96.7 0.0064 1.4E-07 50.0 6.8 24 14-37 56-79 (394)
492 COG1117 PstB ABC-type phosphat 96.7 0.0015 3.3E-08 48.4 2.7 22 13-34 33-54 (253)
493 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0016 3.4E-08 47.7 2.9 22 14-35 4-25 (188)
494 PTZ00088 adenylate kinase 1; P 96.6 0.0016 3.5E-08 49.4 2.9 24 13-36 6-29 (229)
495 PLN03025 replication factor C 96.6 0.02 4.3E-07 45.8 9.3 25 14-38 35-59 (319)
496 PRK02496 adk adenylate kinase; 96.6 0.0018 3.9E-08 47.4 3.1 23 14-36 2-24 (184)
497 PRK10751 molybdopterin-guanine 96.6 0.0026 5.6E-08 46.0 3.7 24 13-36 6-29 (173)
498 KOG1424 Predicted GTP-binding 96.6 0.01 2.2E-07 49.4 7.4 74 76-159 166-244 (562)
499 PRK00625 shikimate kinase; Pro 96.6 0.0018 4E-08 46.9 2.9 21 15-35 2-22 (173)
500 PRK13833 conjugal transfer pro 96.6 0.013 2.9E-07 46.7 7.9 25 13-37 144-168 (323)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-45 Score=258.93 Aligned_cols=176 Identities=49% Similarity=0.833 Sum_probs=168.5
Q ss_pred CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC
Q 027824 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA 86 (218)
Q Consensus 7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 86 (218)
...+++.+||+|+|+.|+|||+|+.||..+.|.+.+..|+|+++..+++.++++.++++||||+|+++|+++...|++++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCHHH
Q 027824 87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVEN 165 (218)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~ 165 (218)
+++|+|||+++.+||+.+..|+.++..+...++|.++||||+|+.+.+.++.++++.|+.+++++ |+|+||+++.+|++
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 99999999999999999999999999999899999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 027824 166 AFTEVLTQIYKIVSKRA 182 (218)
Q Consensus 166 ~~~~i~~~i~~~~~~~~ 182 (218)
.|..|...+.+......
T Consensus 163 ~F~~la~~lk~~~~~~~ 179 (205)
T KOG0084|consen 163 AFLTLAKELKQRKGLHV 179 (205)
T ss_pred HHHHHHHHHHHhcccCC
Confidence 99999998877655443
No 2
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-42 Score=245.16 Aligned_cols=176 Identities=48% Similarity=0.849 Sum_probs=169.2
Q ss_pred CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC
Q 027824 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA 86 (218)
Q Consensus 7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 86 (218)
..++++.+||+++|+++||||+|+.+|..+.|...+..|.|+++..+++.+++..+.+++|||.|++.|+.+...|+++|
T Consensus 6 ~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA 85 (207)
T KOG0078|consen 6 KEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA 85 (207)
T ss_pred cCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824 87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA 166 (218)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (218)
+++++|||+++..||+++..|+..+.++...++|.++||||+|+...+++..+.++++|.++|++|+||||++|.||++.
T Consensus 86 ~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 86 MGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEA 165 (207)
T ss_pred CeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 027824 167 FTEVLTQIYKIVSKRA 182 (218)
Q Consensus 167 ~~~i~~~i~~~~~~~~ 182 (218)
|..|...++.......
T Consensus 166 F~~La~~i~~k~~~~~ 181 (207)
T KOG0078|consen 166 FLSLARDILQKLEDAE 181 (207)
T ss_pred HHHHHHHHHhhcchhh
Confidence 9999999997555543
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-42 Score=244.20 Aligned_cols=198 Identities=38% Similarity=0.704 Sum_probs=173.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 90 (218)
...+||+|+|..++|||||+-||..+.|.+...+|+|-.+..+.+.+++..+++.||||+|++.|.++.++|++++++.|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35699999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824 91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170 (218)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (218)
+|||+++.+||..+..|+.++.....+++-+.++|||+||.+.+++..+++..++...++.|||+||+++.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCcCCCCCccccccCCCCCccccCccC
Q 027824 171 LTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 217 (218)
Q Consensus 171 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 217 (218)
.+.+.....+...... .-+++.-+...+ .....++||+
T Consensus 163 a~~lp~~~~~~~~~~~-------~~~~g~~l~~~~--~~~~~~~~C~ 200 (200)
T KOG0092|consen 163 AEKLPCSDPQERQGLP-------NRRQGVDLNSNQ--EPARPSGCCA 200 (200)
T ss_pred HHhccCcccccccccc-------ccccceecccCC--CCcCcCCcCC
Confidence 9988775544432100 011344444333 3344678885
No 4
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-41 Score=241.87 Aligned_cols=200 Identities=72% Similarity=1.115 Sum_probs=186.7
Q ss_pred CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC
Q 027824 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA 86 (218)
Q Consensus 7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 86 (218)
+.++++.+||+++|++++|||-|+.||..+.|..+...|+|+++....+.++++.++.+||||+|+++|+.....|++++
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824 87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA 166 (218)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (218)
.+.++|||++.+.+|+++..|+.++..+...++++++|+||+||.+.+.+..++++.++...+..|+++||.+..+|++.
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCCCCCcCCCCCccccccCC
Q 027824 167 FTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDD 206 (218)
Q Consensus 167 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (218)
|..++..+++...++.............+.++..+++...
T Consensus 168 F~~~l~~I~~~vs~k~~~~~~~~~~~~~~~~g~~~~~~~~ 207 (222)
T KOG0087|consen 168 FERVLTEIYKIVSKKQLDENNDPLESSSPLQGQEISVHPT 207 (222)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccCCCCCCcccccccC
Confidence 9999999999999888777765433335667777777543
No 5
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-41 Score=236.65 Aligned_cols=183 Identities=50% Similarity=0.851 Sum_probs=172.5
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG 88 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 88 (218)
.+.+.+|++++|+.|+|||+|+.+|+...|.+.+..|.|+++..+.+.++++.++++||||+|++.++++...|++.+.+
T Consensus 2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027824 89 ALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT 168 (218)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (218)
+|+|||++++++|+.+..|+..+.++..++..+++++||+|+...++++.+++++|++++++.|+++||+++++|+++|.
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCCCC
Q 027824 169 EVLTQIYKIVSKRAVEAGSNGTA 191 (218)
Q Consensus 169 ~i~~~i~~~~~~~~~~~~~~~~~ 191 (218)
.+...+++...........+.+.
T Consensus 162 nta~~Iy~~~q~g~~~~~~~~k~ 184 (216)
T KOG0098|consen 162 NTAKEIYRKIQDGVFDDINESKG 184 (216)
T ss_pred HHHHHHHHHHHhccccccccccc
Confidence 99999999877666555444433
No 6
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.9e-41 Score=230.03 Aligned_cols=170 Identities=46% Similarity=0.779 Sum_probs=161.7
Q ss_pred CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCc
Q 027824 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAV 87 (218)
Q Consensus 8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 87 (218)
..++..+||+++|.+|+|||||+.+|..+.|.+....|+|.++..+.+.+++..+++.||||+|++.|+.+.+.|++++.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 45678899999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824 88 GALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA 166 (218)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (218)
++|+|||++.+++|..+..|++++.-+.. +++..++|+||+|...++.++-+++..|++++++.|+|+||++.++|...
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 99999999999999999999999987765 77888999999999889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027824 167 FTEVLTQIYKI 177 (218)
Q Consensus 167 ~~~i~~~i~~~ 177 (218)
|+.+++++.+-
T Consensus 166 FeelveKIi~t 176 (209)
T KOG0080|consen 166 FEELVEKIIET 176 (209)
T ss_pred HHHHHHHHhcC
Confidence 99999988764
No 7
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-41 Score=236.71 Aligned_cols=170 Identities=35% Similarity=0.676 Sum_probs=160.3
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 89 (218)
.-..+||+++|+.++||||||.||+.+.|...|.+|+|+++..+++.+.+..+.+++|||+|++.|+++.+.|+++++++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCC-CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027824 90 LLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT 168 (218)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (218)
|+|||+++..||++...|+..+...... ++.+++||||.||.+.+++..+++...++++++.|+++||+.|.||+.+|.
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr 178 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR 178 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence 9999999999999999999999888775 488899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 027824 169 EVLTQIYKIVS 179 (218)
Q Consensus 169 ~i~~~i~~~~~ 179 (218)
.|...+.....
T Consensus 179 rIaa~l~~~~~ 189 (221)
T KOG0094|consen 179 RIAAALPGMEV 189 (221)
T ss_pred HHHHhccCccc
Confidence 98887766543
No 8
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=6.5e-40 Score=246.50 Aligned_cols=210 Identities=69% Similarity=1.088 Sum_probs=180.2
Q ss_pred CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC
Q 027824 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA 86 (218)
Q Consensus 7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 86 (218)
..+.++.+||+++|++|||||||+++|.+..+...+.+|.+.++....+.+++..+.+.|||++|++.+..++..+++.+
T Consensus 6 ~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 85 (216)
T PLN03110 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGA 85 (216)
T ss_pred ccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCC
Confidence 34566889999999999999999999999998888889999999888898999899999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824 87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA 166 (218)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (218)
+++|+|||++++.+|+.+..|+..+......++|+++|+||+|+.+.+.+..++++.++..++++|+++||++|.|++++
T Consensus 86 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~l 165 (216)
T PLN03110 86 VGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKA 165 (216)
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998876678999999999999888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCCCCCcCCCCCccccccCCCCCccccCccC
Q 027824 167 FTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 217 (218)
Q Consensus 167 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 217 (218)
|++++..+.+....+...........+++.++..+.+.+.. ..++++|||
T Consensus 166 f~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~c~ 215 (216)
T PLN03110 166 FQTILLEIYHIISKKALAAQEAAANSGLPGQGTTINVADTS-GNNKRGCCS 215 (216)
T ss_pred HHHHHHHHHHHhhccccccccCcccccCcCcCCcccccCcc-CCCCCCCcC
Confidence 99999999887665554444333333444566666664443 345677997
No 9
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.3e-40 Score=223.92 Aligned_cols=173 Identities=48% Similarity=0.771 Sum_probs=165.3
Q ss_pred CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCc
Q 027824 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAV 87 (218)
Q Consensus 8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 87 (218)
.++++.++.+++|++|+|||+|+.+|..+.|..+|..|+|.++.++++.+++..+++.|||++|++.|+.+...++++.+
T Consensus 3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth 82 (198)
T KOG0079|consen 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH 82 (198)
T ss_pred ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027824 88 GALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167 (218)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (218)
++++|||+++.+||.++..|+.++.... +..|-++|+||.|.++.+.+..++++.|+...|+.+||+|++++++++.+|
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF 161 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence 9999999999999999999999998776 688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 027824 168 TEVLTQIYKIVSKR 181 (218)
Q Consensus 168 ~~i~~~i~~~~~~~ 181 (218)
.-|.+++++...+.
T Consensus 162 ~cit~qvl~~k~r~ 175 (198)
T KOG0079|consen 162 HCITKQVLQAKLRE 175 (198)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998887443
No 10
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.6e-39 Score=239.70 Aligned_cols=195 Identities=37% Similarity=0.675 Sum_probs=169.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID-NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 92 (218)
+||+++|++|+|||||+++|+++.+...+.+|.+.++....+.++ +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988888999988888888887 7789999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHH
Q 027824 93 YDVTRHATFQNVGRWLRELREHT----DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES-LYFMETSALDATNVENAF 167 (218)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~ 167 (218)
||++++++|+.+..|+..+.... ..++|+++|+||+|+.....+..+++.++++..+ ..|+++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998886542 2578999999999998667788889999999988 689999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCCCCcCCCCCccccccCCCCCccccCcc
Q 027824 168 TEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCC 216 (218)
Q Consensus 168 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 216 (218)
.+|++.+.+.+....... ++.++..+..++...++|.++||
T Consensus 161 ~~l~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 201 (201)
T cd04107 161 RFLVKNILANDKNLQQAE--------TPEDGSVIDLKQTTTKKKSKGCC 201 (201)
T ss_pred HHHHHHHHHhchhhHhhc--------CCCcccccccccceeccccCCCC
Confidence 999999877654443332 23335667777777778888999
No 11
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-40 Score=222.17 Aligned_cols=208 Identities=36% Similarity=0.711 Sum_probs=185.8
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG 88 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 88 (218)
+++..+||+++|+.|+|||+|+++|+.+.|++-...|+|+++..+++.+++..++++||||.|++.|+++...|++.+++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 67789999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027824 89 ALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT 168 (218)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (218)
+|+|||++...+|+.+++|+.++..+....+.-|+|+||+|+.+.+++....+++|+......|+|+||++.++++.+|.
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 99999999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCCCCCcCCCCCccccccCCCCCccccCccC
Q 027824 169 EVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 217 (218)
Q Consensus 169 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 217 (218)
.+.-.+..........++...++....+.|..+.+-+--+. |-..||-
T Consensus 163 ~~a~rli~~ar~~d~v~~~~a~a~~~~seg~si~l~s~aqt-~~~~cc~ 210 (213)
T KOG0095|consen 163 DLACRLISEARQNDLVNNVSAPAPNSSSEGKSIKLISYAQT-QLLTCCN 210 (213)
T ss_pred HHHHHHHHHHHhccchhhccccCccccCCCCcccchhHHHH-HHhcccc
Confidence 99888877776666677776666666666666655544332 3357773
No 12
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.3e-38 Score=234.77 Aligned_cols=164 Identities=39% Similarity=0.733 Sum_probs=152.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+.|+++|..|||||||+++|..+.|...+.+|.+.++....+.+++..+.+.+||++|++.|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46999999999999999999999998888899999998888899998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE-SLYFMETSALDATNVENAFTEVLT 172 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (218)
|++++++|+.+..|+..+......+.|+++|+||+|+...+++..+++.+++.+. ++.|++|||++|.||+++|.+++.
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887766578999999999999888889988999999885 789999999999999999999999
Q ss_pred HHHHH
Q 027824 173 QIYKI 177 (218)
Q Consensus 173 ~i~~~ 177 (218)
.+.+.
T Consensus 161 ~~~~~ 165 (202)
T cd04120 161 DILKK 165 (202)
T ss_pred HHHHh
Confidence 88765
No 13
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=2.2e-38 Score=232.85 Aligned_cols=167 Identities=37% Similarity=0.700 Sum_probs=155.1
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 89 (218)
.+..+||+++|..|||||||+.+|..+.+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999988888878888888888888899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027824 90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE 169 (218)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 169 (218)
|+|||++++.+|+.+..|+..+.... +++|+|||+||.|+.+.+.+..++++.+++..+++|++|||++|.||+++|.+
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999997765 68999999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027824 170 VLTQIYKI 177 (218)
Q Consensus 170 i~~~i~~~ 177 (218)
|++.+...
T Consensus 162 l~~~i~~~ 169 (189)
T cd04121 162 LARIVLMR 169 (189)
T ss_pred HHHHHHHh
Confidence 99877653
No 14
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=4.2e-39 Score=224.45 Aligned_cols=172 Identities=35% Similarity=0.669 Sum_probs=160.6
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG 88 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 88 (218)
.+...+||+++|++|+|||||.++|.+..|...+..|+|.++..+.+.+++..+.++||||+|+++|.++...+++++|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCC--CcccCHHHHHHHHHHc-CCeEEEEccCCCC
Q 027824 89 ALLVYDVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKTDLRH--LVAVSTEDGKAFAEQE-SLYFMETSALDAT 161 (218)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~ 161 (218)
.++|||++++.+|+.+..|..++..... ...|+||+|||+|+.+ .++++...+++|+... +++|||+|||+..
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999999977655 4589999999999976 3889999999999984 6899999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 027824 162 NVENAFTEVLTQIYKIVSK 180 (218)
Q Consensus 162 ~v~~~~~~i~~~i~~~~~~ 180 (218)
||++.|..+.+.+++....
T Consensus 165 NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANEDR 183 (210)
T ss_pred cHHHHHHHHHHHHHhccch
Confidence 9999999999999887654
No 15
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-39 Score=215.89 Aligned_cols=176 Identities=40% Similarity=0.740 Sum_probs=167.2
Q ss_pred CCCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcC
Q 027824 6 PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRG 85 (218)
Q Consensus 6 ~~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 85 (218)
.++.+++.+|++++|+..+|||||+.++.+..|...+..|.|+++..+++.-..+.+.++||||.|++.|+.+...++++
T Consensus 14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRg 93 (193)
T KOG0093|consen 14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRG 93 (193)
T ss_pred ccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhc
Confidence 46789999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027824 86 AVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVEN 165 (218)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 165 (218)
++++|+|||+++.++|..+..|...+..+.-.++|+|+++||+|+.+++.++.+.++.++.++|+.|||+||+.|.+|+.
T Consensus 94 amgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~ 173 (193)
T KOG0093|consen 94 AMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQ 173 (193)
T ss_pred cceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 027824 166 AFTEVLTQIYKIVSKR 181 (218)
Q Consensus 166 ~~~~i~~~i~~~~~~~ 181 (218)
+|..++..+.+...+.
T Consensus 174 ~Fe~lv~~Ic~kmses 189 (193)
T KOG0093|consen 174 VFERLVDIICDKMSES 189 (193)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999887765543
No 16
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-38 Score=214.56 Aligned_cols=188 Identities=45% Similarity=0.777 Sum_probs=177.2
Q ss_pred CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC
Q 027824 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA 86 (218)
Q Consensus 7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 86 (218)
.+.+|+.+|++++|+.|.|||+|+++|..+.|......|+|+++..+.+.+.++.++++||||.|++.|++..+.|++++
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824 87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA 166 (218)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (218)
.+.++|||++++++|+.+..|+..+.....+++-+|+++||.|+.++++++..++..|+.+..+.+.|+|+.+|++|++.
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCCCCCcC
Q 027824 167 FTEVLTQIYKIVSKRAVEAGSNGTASTL 194 (218)
Q Consensus 167 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~ 194 (218)
|-.....++......+..+..-++..+=
T Consensus 163 Fl~c~~tIl~kIE~GElDPer~gsGIQY 190 (214)
T KOG0086|consen 163 FLKCARTILNKIESGELDPERMGSGIQY 190 (214)
T ss_pred HHHHHHHHHHHHhhcCCCHHHccccccc
Confidence 9999999998888777776666655443
No 17
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.1e-37 Score=231.20 Aligned_cols=177 Identities=27% Similarity=0.451 Sum_probs=154.8
Q ss_pred CCCCCCCCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhh
Q 027824 1 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITS 80 (218)
Q Consensus 1 m~~~~~~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 80 (218)
|++-+-..+....+||+++|+.+||||+|+.+|..+.|...+.+|.+.++ ...+.+++..+.+.||||+|++.|..++.
T Consensus 1 ~~~~~~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~ 79 (232)
T cd04174 1 MKERRIPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRP 79 (232)
T ss_pred CcccccCcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHH
Confidence 44333344556689999999999999999999999999989989987766 44677889999999999999999999999
Q ss_pred hhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHH
Q 027824 81 AYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRH------------LVAVSTEDGKAFAEQ 147 (218)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~ 147 (218)
.+++++|++|+|||++++.+|+.+ ..|+..+.... ++.|+|+|+||+|+.. .+.+..++++++++.
T Consensus 80 ~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~ 158 (232)
T cd04174 80 LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ 158 (232)
T ss_pred HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH
Confidence 999999999999999999999985 78999998765 5789999999999964 367889999999999
Q ss_pred cCC-eEEEEccCCCC-CHHHHHHHHHHHHHHHHh
Q 027824 148 ESL-YFMETSALDAT-NVENAFTEVLTQIYKIVS 179 (218)
Q Consensus 148 ~~~-~~~~~Sa~~~~-~v~~~~~~i~~~i~~~~~ 179 (218)
+++ .|+||||++|. ||+++|..++..+++...
T Consensus 159 ~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~ 192 (232)
T cd04174 159 LGAEVYLECSAFTSEKSIHSIFRSASLLCLNKLS 192 (232)
T ss_pred cCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence 998 69999999997 899999999998876533
No 18
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.2e-39 Score=217.67 Aligned_cols=211 Identities=32% Similarity=0.574 Sum_probs=178.8
Q ss_pred CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC
Q 027824 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA 86 (218)
Q Consensus 7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 86 (218)
...+...|||+++|..-+|||||+-|++.+.|...+..|..-.+..+.+.+.+....+.||||.|++.|..+-+.|+++.
T Consensus 7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS 86 (218)
T KOG0088|consen 7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS 86 (218)
T ss_pred ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence 34556789999999999999999999999999888888877777788888888899999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824 87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA 166 (218)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (218)
+++++|||++|+++|+.+..|..++.......+-+++|+||+|+.+++.++..++..++...|+.|+++||+++.||.++
T Consensus 87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISEL 166 (218)
T ss_pred CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHH
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCCCCCcCCCCCccccccCCCCCccccCccC
Q 027824 167 FTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 217 (218)
Q Consensus 167 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 217 (218)
|..+.....+....+.+..++-+....+...+..+.-...+.....++||+
T Consensus 167 Fe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~iD~e~~a~~sg~~CC~ 217 (218)
T KOG0088|consen 167 FESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRLIDNEAEAERSGKRCCR 217 (218)
T ss_pred HHHHHHHHHHHhhhcccccCCcCCCCCCcccchhccCCCcccccccCCccC
Confidence 999999888887666655544443322223233332222233333456996
No 19
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=5.7e-37 Score=228.01 Aligned_cols=171 Identities=47% Similarity=0.764 Sum_probs=155.5
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 89 (218)
+++.+||+++|++|+|||||+++|.+..+...+.+|.+.++....+..++..+.+.|||++|++.+..++..++++++++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 45679999999999999999999999998888889998888888888888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027824 90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE 169 (218)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 169 (218)
++|||++++++|+.+..|+..+.... ...|++||+||+|+.+...+..+++..++...+++|+++||++|.|++++|++
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 99999999999999999999987654 67899999999999887777888889999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 027824 170 VLTQIYKIVSKR 181 (218)
Q Consensus 170 i~~~i~~~~~~~ 181 (218)
|...+++.....
T Consensus 162 l~~~~~~~~~~~ 173 (199)
T cd04110 162 ITELVLRAKKDN 173 (199)
T ss_pred HHHHHHHhhhcc
Confidence 999998765444
No 20
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.5e-38 Score=215.06 Aligned_cols=204 Identities=38% Similarity=0.687 Sum_probs=173.8
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI-DNKVVKAQIWDTAGQERYRAITSAYYRGAVG 88 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 88 (218)
..+.++++++|++-+|||+|++.|+.+.+.+-..||.|++++...+.+ ++..+++++|||.|++.|+++...|+++.-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 457899999999999999999999999999999999999998877766 6778999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC-CCCc-EEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824 89 ALLVYDVTRHATFQNVGRWLRELREHTD-PNII-VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA 166 (218)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (218)
+++|||++++++|+.++.|+.+...... +..+ +.+|++|+||...++++.+++++++..+|..|+|+|+++|.||++.
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 9999999999999999999999887765 4444 5788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh--hhhhcCCCCCCCcCCCCCccccccCCCCCccccCccC
Q 027824 167 FTEVLTQIYKIVSK--RAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 217 (218)
Q Consensus 167 ~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 217 (218)
|..+.+.++....+ -..+.+-.+.+++-+.+-.......++ ++.|||
T Consensus 165 F~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P----~k~c~C 213 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQP----SKPCQC 213 (213)
T ss_pred HHHHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCC----CCCCCC
Confidence 99999999888665 344555566665444433333333333 356654
No 21
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.1e-36 Score=223.61 Aligned_cols=164 Identities=45% Similarity=0.760 Sum_probs=148.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCC-CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 92 (218)
+||+++|++|+|||||+++|.++.+.. .+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988754 5667877777777788888899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824 93 YDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT 172 (218)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (218)
||++++++++.+..|+..+......++|+++|+||+|+...+.+..++++.++..++++|+++||++|.|++++|.+|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998876668999999999999877777778888999999999999999999999999999999
Q ss_pred HHHHH
Q 027824 173 QIYKI 177 (218)
Q Consensus 173 ~i~~~ 177 (218)
.+.+.
T Consensus 161 ~~~~~ 165 (191)
T cd04112 161 ELKHR 165 (191)
T ss_pred HHHHh
Confidence 88654
No 22
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=1.6e-36 Score=227.33 Aligned_cols=187 Identities=30% Similarity=0.511 Sum_probs=154.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|.+++|||||+++|+.+.+.. +.+|.+.++....+ ..+.+.|||++|++.|..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999864 46777766554433 4578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------CcccCHHHHHHHHHHcC-----
Q 027824 94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH-------------------LVAVSTEDGKAFAEQES----- 149 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~----- 149 (218)
|++++++|+.+..|+..+......++|+|+|+||+|+.+ .+++..++++.++++.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999888887766557799999999999975 57888999999999876
Q ss_pred ---------CeEEEEccCCCCCHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcCCCCCccccccCCCCCccccCcc
Q 027824 150 ---------LYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCC 216 (218)
Q Consensus 150 ---------~~~~~~Sa~~~~~v~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 216 (218)
++|+||||++|.||+++|..+++.++....+...+.+. .+-.+.+...+.++++||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANR-----------TQGTVNLPNPKRSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhh-----------hhccccCCCcccCCCCCC
Confidence 68999999999999999999999998876666543211 122333344555678898
No 23
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.7e-36 Score=221.86 Aligned_cols=165 Identities=47% Similarity=0.795 Sum_probs=152.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998778899888888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ 173 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (218)
|++++++|+.+..|+..+........|+++++||+|+.+...+..++++.++...+++|+++||+++.|++++|.++++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999987766678999999999998878888888889998889999999999999999999999998
Q ss_pred HHHHH
Q 027824 174 IYKIV 178 (218)
Q Consensus 174 i~~~~ 178 (218)
+.+..
T Consensus 161 ~~~~~ 165 (188)
T cd04125 161 IIKRL 165 (188)
T ss_pred HHHHh
Confidence 87643
No 24
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=3.7e-36 Score=217.66 Aligned_cols=164 Identities=50% Similarity=0.890 Sum_probs=152.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 92 (218)
.+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999888888888888888888888899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824 93 YDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT 172 (218)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (218)
||++++++|+.+..|+..+......+.|+++|+||+|+...+.+..++++++++..+++++++||++|.|++++|..++.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999987776678999999999999888888888999999999999999999999999999999998
Q ss_pred HHHH
Q 027824 173 QIYK 176 (218)
Q Consensus 173 ~i~~ 176 (218)
.+++
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 7754
No 25
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=222.34 Aligned_cols=207 Identities=47% Similarity=0.786 Sum_probs=170.1
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 89 (218)
.++.+||+++|++++|||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 35679999999999999999999999988888888988888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027824 90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE 169 (218)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 169 (218)
|+|||++++++|+.+..|+..+........|+++++||+|+.+.+.+..+++.++++.++++|+++||+++.|++++|.+
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998887666578999999999999887888888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCCCCCCcCCCCCccccccCCCCC-ccccCcc
Q 027824 170 VLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSV-LKRIGCC 216 (218)
Q Consensus 170 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~cc 216 (218)
+++.+++...+.......+......+..+.+.-.-..+.. .|-++||
T Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
T PLN03108 163 TAAKIYKKIQDGVFDVSNESYGIKVGYGAIPGASGGRDGTSSQGGGCC 210 (210)
T ss_pred HHHHHHHHhhhccccccccccccccccCCCCCCCCCccccccCCCCCC
Confidence 9999887654443333333333333333333322222222 3456777
No 26
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.9e-36 Score=223.71 Aligned_cols=165 Identities=33% Similarity=0.520 Sum_probs=145.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 94 (218)
||+++|.+|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.|..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999988877777776554 4456678888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027824 95 VTRHATFQNVGRWLRELREHTD---PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL 171 (218)
Q Consensus 95 ~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (218)
++++.+|+.+..|+..+..... .+.|+++|+||+|+...+.+...++.+++...+++|+++||++|.|++++|.+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988866542 5789999999999987778888888889988999999999999999999999999
Q ss_pred HHHHHHHhh
Q 027824 172 TQIYKIVSK 180 (218)
Q Consensus 172 ~~i~~~~~~ 180 (218)
+.+.+++..
T Consensus 160 ~~l~~~~~~ 168 (190)
T cd04144 160 RALRQQRQG 168 (190)
T ss_pred HHHHHhhcc
Confidence 887655444
No 27
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.1e-36 Score=223.39 Aligned_cols=169 Identities=43% Similarity=0.748 Sum_probs=152.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI-DNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 91 (218)
.+||+++|++|+|||||+++|+++.+...+.+|.+.++....+.+ ++..+.+.+||++|++.+..++..+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999988888889888888877776 4667899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824 92 VYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170 (218)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (218)
|||++++++|+.+..|+..+..... ...|+++|+||+|+.....+..+++.++++.++++|+++||++|.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999876544 467889999999998888888888999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 027824 171 LTQIYKIVSKR 181 (218)
Q Consensus 171 ~~~i~~~~~~~ 181 (218)
++.+.+.....
T Consensus 162 ~~~~~~~~~~~ 172 (211)
T cd04111 162 TQEIYERIKRG 172 (211)
T ss_pred HHHHHHHhhcC
Confidence 99887774433
No 28
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2.9e-36 Score=220.53 Aligned_cols=162 Identities=31% Similarity=0.547 Sum_probs=146.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 90 (218)
...+||+++|++++|||||+++|..+.+...+.||.+..+ ...+.+++..+.+.||||+|++.|..++..+++++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4568999999999999999999999999888889987665 466778999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEEEEc
Q 027824 91 LVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRH------------LVAVSTEDGKAFAEQESL-YFMETS 156 (218)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~S 156 (218)
+|||++++.+|+.+ ..|+..+.... ++.|+|||+||+|+.+ .+.++.++++++++++++ +|+|||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999997 78999998765 6799999999999964 346889999999999996 899999
Q ss_pred cCCCCC-HHHHHHHHHHHH
Q 027824 157 ALDATN-VENAFTEVLTQI 174 (218)
Q Consensus 157 a~~~~~-v~~~~~~i~~~i 174 (218)
|+++.| |+++|..+++.+
T Consensus 161 Ak~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 161 ALQSENSVRDIFHVATLAC 179 (182)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 999998 999999998854
No 29
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2.5e-36 Score=219.60 Aligned_cols=159 Identities=32% Similarity=0.585 Sum_probs=144.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++++|||||+.++..+.|...+.+|.+..+ ...+.+++..+.+.||||+|++.|..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999888889987665 456778888999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCc----------ccCHHHHHHHHHHcCC-eEEEEccCCCC
Q 027824 94 DVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHLV----------AVSTEDGKAFAEQESL-YFMETSALDAT 161 (218)
Q Consensus 94 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 161 (218)
|++++++|+.+ ..|+..+.... .++|++||+||+|+.+.+ .+..+++.++++..++ .|+||||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999997765 579999999999996543 4788899999999998 59999999999
Q ss_pred CHHHHHHHHHHHH
Q 027824 162 NVENAFTEVLTQI 174 (218)
Q Consensus 162 ~v~~~~~~i~~~i 174 (218)
||+++|..+++.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999865
No 30
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=5.4e-36 Score=221.13 Aligned_cols=165 Identities=36% Similarity=0.551 Sum_probs=147.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 91 (218)
..+||+++|++|+|||||++++.++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 358999999999999999999999988877878877655 5667788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824 92 VYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170 (218)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (218)
|||++++++|+.+..|+..+..... .+.|+++|+||+|+.+...+..+++.+++...+++|+++||++|.|++++|.+|
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999999998876543 578999999999998777778778888888889999999999999999999999
Q ss_pred HHHHHHH
Q 027824 171 LTQIYKI 177 (218)
Q Consensus 171 ~~~i~~~ 177 (218)
++.+.+.
T Consensus 163 ~~~l~~~ 169 (189)
T PTZ00369 163 VREIRKY 169 (189)
T ss_pred HHHHHHH
Confidence 9887653
No 31
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-36 Score=201.26 Aligned_cols=207 Identities=42% Similarity=0.744 Sum_probs=190.4
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG 88 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 88 (218)
.+.+.+|-+++|+-|+|||+|+..|....|...-+.|+|+++..+.+.+.+..++++|||+.|++.|+...+.+++++.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027824 89 ALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT 168 (218)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (218)
.+.|||++.+.+++.+..|+........++.-+++++||.|+...+.+.++++++|+.++|+.|+++||++|.++++.|-
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCCCCCcCCCCCccccccCCCCCccccCc
Q 027824 169 EVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGC 215 (218)
Q Consensus 169 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 215 (218)
...+.+++........-....+..+.++.......-.....++|-+|
T Consensus 167 e~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c 213 (215)
T KOG0097|consen 167 ETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQC 213 (215)
T ss_pred HHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccC
Confidence 99999999988888887777777766665555554556666777777
No 32
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.3e-35 Score=215.00 Aligned_cols=166 Identities=52% Similarity=0.881 Sum_probs=153.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 90 (218)
++.+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 35699999999999999999999999998888899988887788888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824 91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170 (218)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (218)
+|||++++.+|+.+..|+..+......++|+++|+||+|+.+...+..+++..++...+++++++||++|.|++++|.++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999987766789999999999998877778888889999999999999999999999999999
Q ss_pred HHHHHH
Q 027824 171 LTQIYK 176 (218)
Q Consensus 171 ~~~i~~ 176 (218)
.+.+..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 988754
No 33
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=8.6e-36 Score=216.75 Aligned_cols=164 Identities=31% Similarity=0.495 Sum_probs=148.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 92 (218)
.+||+++|.+|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999999888878887544 45577788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027824 93 YDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL 171 (218)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (218)
||++++.+|+.+..|+..+..... .++|+++|+||+|+.+.++++.++++++++..+++|++|||++|.||+++|++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 999999999999999888876533 6799999999999988888898899999999999999999999999999999999
Q ss_pred HHHHHH
Q 027824 172 TQIYKI 177 (218)
Q Consensus 172 ~~i~~~ 177 (218)
..+.+.
T Consensus 161 ~~~~~~ 166 (172)
T cd04141 161 REIRRK 166 (172)
T ss_pred HHHHHh
Confidence 887763
No 34
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.1e-35 Score=216.98 Aligned_cols=161 Identities=32% Similarity=0.539 Sum_probs=144.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 92 (218)
.+||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.|..+...+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 37999999999999999999999999888888887665 45677889999999999999999999999999999999999
Q ss_pred EECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEEEEccC
Q 027824 93 YDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRH------------LVAVSTEDGKAFAEQESL-YFMETSAL 158 (218)
Q Consensus 93 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 158 (218)
||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+ .+.+..++++++++++++ +|+||||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 78999998765 6799999999999964 245888999999999997 79999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q 027824 159 DATN-VENAFTEVLTQIY 175 (218)
Q Consensus 159 ~~~~-v~~~~~~i~~~i~ 175 (218)
+|++ |+++|..+++..+
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998544
No 35
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2.8e-35 Score=215.69 Aligned_cols=167 Identities=41% Similarity=0.723 Sum_probs=150.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC----------CeEEEEEEEeCCCchhhhhhhh
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID----------NKVVKAQIWDTAGQERYRAITS 80 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~ 80 (218)
++.+||+++|++|||||||++++.++.+...+.++.+.++....+.+. +..+.+.+||++|++.+..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 466999999999999999999999999988888998888876666554 4568899999999999999999
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC
Q 027824 81 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALD 159 (218)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (218)
.+++++|++++|||++++++|..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 999999999999999999999999999999876543 5789999999999988778888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027824 160 ATNVENAFTEVLTQIYKI 177 (218)
Q Consensus 160 ~~~v~~~~~~i~~~i~~~ 177 (218)
|.|++++|++|++.++++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999887653
No 36
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1.9e-35 Score=212.97 Aligned_cols=161 Identities=36% Similarity=0.703 Sum_probs=154.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 94 (218)
||+++|+++||||||+++|.++.+...+.+|.+.+.....+..++..+.+.+||++|++.+..++..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824 95 VTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 95 ~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
++++++|+.+..|+..+......+.|++|++||.|+.+.++++.+++++++++++++|+++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999988866799999999999998889999999999999999999999999999999999999987
Q ss_pred H
Q 027824 175 Y 175 (218)
Q Consensus 175 ~ 175 (218)
+
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 37
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=4.5e-35 Score=211.74 Aligned_cols=162 Identities=42% Similarity=0.738 Sum_probs=148.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888888887777777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ 173 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (218)
|++++++++.+..|+..+........|+++|+||+|+.+.+.+..+++.+++...+++++++||+++.|++++|++++..
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999977665689999999999998877777788888998899999999999999999999999886
Q ss_pred HH
Q 027824 174 IY 175 (218)
Q Consensus 174 i~ 175 (218)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 64
No 38
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=2.7e-35 Score=212.04 Aligned_cols=160 Identities=44% Similarity=0.765 Sum_probs=148.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888899988888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ 173 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (218)
|++++++|+.+..|+..+......+.|+++|+||.|+.+.+.+..+++..+++.++++|++|||++|.|++++|.+|.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999887665679999999999998888888889999999999999999999999999999999864
No 39
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=3.9e-35 Score=219.94 Aligned_cols=163 Identities=28% Similarity=0.501 Sum_probs=143.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+|+|++|||||||+++|..+.+...+.||.+..+. ..+.+++..+.+.||||+|++.|..+++.+++++|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999999889899876664 56778899999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCC
Q 027824 94 DVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHL------------VAVSTEDGKAFAEQESL-YFMETSALD 159 (218)
Q Consensus 94 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (218)
|++++++|+.+ ..|...+.... ++.|+|||+||+|+..+ ..+..+++..++++.++ +|+||||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 99999999999 45777665543 78999999999999653 23778899999999996 899999999
Q ss_pred CCC-HHHHHHHHHHHHHHHH
Q 027824 160 ATN-VENAFTEVLTQIYKIV 178 (218)
Q Consensus 160 ~~~-v~~~~~~i~~~i~~~~ 178 (218)
+.+ |+++|..++...+...
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 160 SERSVRDVFHVATVASLGRG 179 (222)
T ss_pred CCcCHHHHHHHHHHHHHhcc
Confidence 985 9999999999876543
No 40
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=5.1e-35 Score=220.00 Aligned_cols=164 Identities=32% Similarity=0.553 Sum_probs=150.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECC-eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDN-KVVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 92 (218)
+||+++|++|||||||+++|.++.+...+.+|.+.++....+.+++ ..+.+.|||++|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888999999998888888754 578999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027824 93 YDVTRHATFQNVGRWLRELREHTD---PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE 169 (218)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 169 (218)
||++++++|+.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++++++.++++++++||++|+|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999977643 45789999999999887888888899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027824 170 VLTQIYKI 177 (218)
Q Consensus 170 i~~~i~~~ 177 (218)
+...+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988875
No 41
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=4.3e-35 Score=216.50 Aligned_cols=162 Identities=30% Similarity=0.576 Sum_probs=143.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 92 (218)
.+||+++|+.+||||||+.+|..+.|...+.+|.+..+ ...+.+++..+.+.||||+|++.|..++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999999888889987655 44566788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CeEEEEccC
Q 027824 93 YDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHL------------VAVSTEDGKAFAEQES-LYFMETSAL 158 (218)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 158 (218)
||++++.+|+.+. .|+..+.... .++|+++|+||.|+.+. ..+..++++++++.++ ++|++|||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999996 5888786654 67999999999999654 2367778999999988 589999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027824 159 DATNVENAFTEVLTQIYK 176 (218)
Q Consensus 159 ~~~~v~~~~~~i~~~i~~ 176 (218)
+|.|++++|.++++.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999987743
No 42
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=8.4e-35 Score=210.50 Aligned_cols=163 Identities=50% Similarity=0.825 Sum_probs=150.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 92 (218)
.+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999998888888888888888888888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824 93 YDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT 172 (218)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (218)
||++++++|..+..|+..+......+.|+++++||.|+.....+..+++..++...+++++++||++|.|++++|.+|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999998766567999999999999887778888899999999999999999999999999999998
Q ss_pred HHH
Q 027824 173 QIY 175 (218)
Q Consensus 173 ~i~ 175 (218)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 775
No 43
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=7.2e-35 Score=210.91 Aligned_cols=162 Identities=32% Similarity=0.658 Sum_probs=149.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++|||||||+++|+++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888899999988888888888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTD-----PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT 168 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (218)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.+...+..++.+.++...+++++++||++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999977653 4689999999999986667788888889998899999999999999999999
Q ss_pred HHHHHHH
Q 027824 169 EVLTQIY 175 (218)
Q Consensus 169 ~i~~~i~ 175 (218)
+|++.++
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998875
No 44
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.5e-34 Score=209.55 Aligned_cols=166 Identities=55% Similarity=0.908 Sum_probs=153.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 90 (218)
++.+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+..+...+++++|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 46699999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824 91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170 (218)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (218)
+|||++++++++.+..|+..+.....++.|+++|+||.|+.+...+..++++.++...++.++++||++++|++++|.++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999987766789999999999998777788888999999999999999999999999999999
Q ss_pred HHHHHH
Q 027824 171 LTQIYK 176 (218)
Q Consensus 171 ~~~i~~ 176 (218)
++.+++
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 988754
No 45
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1e-34 Score=212.74 Aligned_cols=162 Identities=27% Similarity=0.515 Sum_probs=144.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|+.|||||||+++|+.+.+...+.+|.+.++..+.+.+++..+.+.+||++|++.|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888899999988888888998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-----CcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH-----LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT 168 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (218)
|++++.+|+.+..|+..+........| |+|+||+|+.. ......++++++++..++++++|||++|.|++++|.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999776545566 68899999953 122234567788888899999999999999999999
Q ss_pred HHHHHHHH
Q 027824 169 EVLTQIYK 176 (218)
Q Consensus 169 ~i~~~i~~ 176 (218)
++.+.+.+
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99988865
No 46
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.6e-34 Score=217.51 Aligned_cols=165 Identities=32% Similarity=0.521 Sum_probs=147.5
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 89 (218)
....+||+++|.+|||||||+++++.+.+...+.+|.+.++....+..++..+.+.+||++|++.|..++..+++++|++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 37789999999999999999999999999888889999998888887888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027824 90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE 169 (218)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 169 (218)
|+|||++++.+|+.+..|+..+.... .+.|+++|+||+|+.. ..+..++. +++...++.|++|||++|.|++++|.+
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~ 166 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY 166 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence 99999999999999999999998765 6799999999999964 33444444 777788999999999999999999999
Q ss_pred HHHHHHHH
Q 027824 170 VLTQIYKI 177 (218)
Q Consensus 170 i~~~i~~~ 177 (218)
|+..+.+.
T Consensus 167 l~~~~~~~ 174 (219)
T PLN03071 167 LARKLAGD 174 (219)
T ss_pred HHHHHHcC
Confidence 99988654
No 47
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=3.8e-34 Score=212.03 Aligned_cols=164 Identities=33% Similarity=0.606 Sum_probs=145.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCC-CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 92 (218)
+||+++|++|+|||||+++|+++.+.. .+.+|.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998864 5678888888778888899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC----cccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027824 93 YDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL----VAVSTEDGKAFAEQESLYFMETSALDATNVENAFT 168 (218)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (218)
||++++.+++.+..|+..+.... .+.|+++|+||.|+... .++..+++.+++...+++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999987653 57999999999998532 45566678888888899999999999999999999
Q ss_pred HHHHHHHHHH
Q 027824 169 EVLTQIYKIV 178 (218)
Q Consensus 169 ~i~~~i~~~~ 178 (218)
++.+.+.+..
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9999887544
No 48
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2.9e-34 Score=207.43 Aligned_cols=163 Identities=77% Similarity=1.199 Sum_probs=150.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 91 (218)
..+||+++|+++||||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 45899999999999999999999999888888999988888888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027824 92 VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL 171 (218)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (218)
|||++++.+++.+..|+..+......+.|+++|+||.|+...+.+..++...++...+++++++||++|.|++++|++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999887756799999999999988777888888899988899999999999999999999998
Q ss_pred HHH
Q 027824 172 TQI 174 (218)
Q Consensus 172 ~~i 174 (218)
..+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 49
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.5e-34 Score=210.81 Aligned_cols=159 Identities=30% Similarity=0.517 Sum_probs=141.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++|+|||||+++|..+.+...+.||.+..+. ..+.+++..+.+.|||++|++.+..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999998888899876663 45677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CeEEEEccCC
Q 027824 94 DVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHL------------VAVSTEDGKAFAEQES-LYFMETSALD 159 (218)
Q Consensus 94 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 159 (218)
|++++++|+.+. .|+..+.... .++|+|+|+||+|+... +.+..+++++++++.+ +.|++|||++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999996 5988887654 57999999999998653 5677788899998887 6899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027824 160 ATNVENAFTEVLTQI 174 (218)
Q Consensus 160 ~~~v~~~~~~i~~~i 174 (218)
|.|++++|+.++..+
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998754
No 50
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.5e-34 Score=206.51 Aligned_cols=162 Identities=45% Similarity=0.791 Sum_probs=148.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 91 (218)
..+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 56999999999999999999999998888787888888878888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHHHH
Q 027824 92 VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL-YFMETSALDATNVENAFTEV 170 (218)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i 170 (218)
|||++++.+++.+..|+..+......++|+++|+||+|+.+.+++..+++.++++..+. .++++||++|.|++++|.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999876667899999999999988777888888999998876 68999999999999999999
Q ss_pred HHH
Q 027824 171 LTQ 173 (218)
Q Consensus 171 ~~~ 173 (218)
.+.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 864
No 51
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=5.2e-34 Score=205.32 Aligned_cols=160 Identities=50% Similarity=0.870 Sum_probs=148.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ 173 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (218)
|++++.++..+..|+..+.....++.|+++++||.|+.+...+..+++..++...++.++++||+++.|++++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877666889999999999998877888889999999999999999999999999999999875
No 52
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=3.8e-34 Score=206.34 Aligned_cols=160 Identities=33% Similarity=0.547 Sum_probs=142.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++|||||||++++..+.+...+.+|.+ +.....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777777765 444566778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT 172 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (218)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..+++.++.+++++||+++.|++++|.++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999998876543 67999999999999877777777788888888899999999999999999999987
Q ss_pred HH
Q 027824 173 QI 174 (218)
Q Consensus 173 ~i 174 (218)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 53
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=9.3e-34 Score=208.91 Aligned_cols=165 Identities=30% Similarity=0.522 Sum_probs=142.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID-NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 92 (218)
+||+++|++|+|||||+++|.++.+...+.++.+.++.. .+... +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999988887887766543 35454 6778999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC----cccCHHHHHHHHHHcCC-eEEEEccCCCCCHHHH
Q 027824 93 YDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHL----VAVSTEDGKAFAEQESL-YFMETSALDATNVENA 166 (218)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~ 166 (218)
||++++++|+.+. .|+..+.... .+.|+++|+||.|+... +.+..+++++++...++ +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999986 5888776543 67999999999999653 35667888999999988 8999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027824 167 FTEVLTQIYKIVSK 180 (218)
Q Consensus 167 ~~~i~~~i~~~~~~ 180 (218)
|..+++.+.+...+
T Consensus 159 f~~l~~~~~~~~~~ 172 (187)
T cd04132 159 FDTAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHHHhhhhh
Confidence 99999988764443
No 54
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.4e-33 Score=204.71 Aligned_cols=162 Identities=34% Similarity=0.635 Sum_probs=144.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 94 (218)
||+++|++|||||||+++|+++.+...+.+|.+.++....+.+++..+.+.+||++|++.|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998999999988888888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027824 95 VTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVA--VSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL 171 (218)
Q Consensus 95 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (218)
++++++++.+..|+..+..... ...|+++|+||.|+..... ...+++..++++.+++|+++||++|.|++++|..|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999998865433 4578999999999965433 346677888888899999999999999999999999
Q ss_pred HHHHH
Q 027824 172 TQIYK 176 (218)
Q Consensus 172 ~~i~~ 176 (218)
..+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88755
No 55
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=6.5e-34 Score=205.44 Aligned_cols=160 Identities=33% Similarity=0.543 Sum_probs=143.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|.+|||||||+++++.+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 7999999999999999999999888777777776554 456777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT 172 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (218)
|++++.+|+.+..|+..+..... .+.|+++|+||+|+.+...+..+++.++++..+++|+++||++|.|++++|.++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999998876543 67999999999999887777777788888888999999999999999999999987
Q ss_pred HH
Q 027824 173 QI 174 (218)
Q Consensus 173 ~i 174 (218)
.+
T Consensus 161 ~l 162 (164)
T cd04175 161 QI 162 (164)
T ss_pred Hh
Confidence 65
No 56
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=3.7e-33 Score=209.37 Aligned_cols=170 Identities=45% Similarity=0.742 Sum_probs=149.1
Q ss_pred CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC
Q 027824 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA 86 (218)
Q Consensus 7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 86 (218)
..+.+..+||+++|++|+|||||+++|++..+. .+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 86 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA 86 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 456677899999999999999999999998774 5568888888778888888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHH-HHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027824 87 VGALLVYDVTRHATFQNVGR-WLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVE 164 (218)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 164 (218)
|++|+|||++++++|+.+.. |...+..... .+.|+++|+||+|+.....+..++...++...++.|+++||+++.|++
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVE 166 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999976 6666654332 568999999999998777778788888898899999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027824 165 NAFTEVLTQIYKI 177 (218)
Q Consensus 165 ~~~~~i~~~i~~~ 177 (218)
++|.+|...+.+.
T Consensus 167 ~l~~~l~~~~~~~ 179 (211)
T PLN03118 167 QCFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988664
No 57
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.9e-33 Score=202.76 Aligned_cols=163 Identities=61% Similarity=0.985 Sum_probs=150.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999888888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ 173 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (218)
|++++.+++.+..|+..+......++|+++++||+|+....++..+.+++++...+++++++|++++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988766789999999999998777778888889999899999999999999999999999988
Q ss_pred HHH
Q 027824 174 IYK 176 (218)
Q Consensus 174 i~~ 176 (218)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 754
No 58
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.5e-33 Score=203.02 Aligned_cols=158 Identities=34% Similarity=0.622 Sum_probs=144.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC--CeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID--NKVVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 91 (218)
+||+++|++++|||||+++++++.+...+.++.+.++....+.+. +..+.+.+||+||++.+..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999888888898888877777776 777899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027824 92 VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL 171 (218)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (218)
|||++++++++.+..|+..+.... .++|+++|+||.|+.....+..+++..++...+++++++|+++|.|++++|.+|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999987654 6799999999999988777888889999999999999999999999999999987
Q ss_pred H
Q 027824 172 T 172 (218)
Q Consensus 172 ~ 172 (218)
.
T Consensus 160 ~ 160 (162)
T cd04106 160 E 160 (162)
T ss_pred H
Confidence 5
No 59
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2.1e-33 Score=203.90 Aligned_cols=163 Identities=41% Similarity=0.719 Sum_probs=146.1
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 89 (218)
++..+||+++|++++|||||+++|.++.+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++++|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 34679999999999999999999999999888888888888778888899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCCHH
Q 027824 90 LLVYDVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES-LYFMETSALDATNVE 164 (218)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 164 (218)
++|||++++++++.+..|+..+..... .++|+++|+||+|+. .+.+..+++++++...+ .+++++||++|.|++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 999999999999999999988866432 568999999999986 45667788999998887 479999999999999
Q ss_pred HHHHHHHHH
Q 027824 165 NAFTEVLTQ 173 (218)
Q Consensus 165 ~~~~~i~~~ 173 (218)
++|..+++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999864
No 60
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.9e-33 Score=203.34 Aligned_cols=160 Identities=33% Similarity=0.609 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999998888888899888887777777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ 173 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (218)
|++++++++.+..|+..+..... ++|+++|+||+|+.+ ..+. .+..+++...+++++++||++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999987763 899999999999974 2333 34556777788899999999999999999999988
Q ss_pred HHH
Q 027824 174 IYK 176 (218)
Q Consensus 174 i~~ 176 (218)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 764
No 61
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=1.8e-33 Score=204.89 Aligned_cols=158 Identities=33% Similarity=0.542 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|.+|||||||+.+++.+.+...+.++.+. .....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 79999999999999999999999998888888753 43556678888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCC
Q 027824 94 DVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHL------------VAVSTEDGKAFAEQESL-YFMETSALD 159 (218)
Q Consensus 94 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (218)
|++++++|+.+. .|+..+.... .+.|+++|+||+|+.+. +.+..+++.+++.+++. +|++|||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999995 5888886654 67999999999999643 35788889999999885 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 027824 160 ATNVENAFTEVLTQ 173 (218)
Q Consensus 160 ~~~v~~~~~~i~~~ 173 (218)
|.|++++|+.++..
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998763
No 62
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=3.4e-33 Score=201.14 Aligned_cols=161 Identities=35% Similarity=0.618 Sum_probs=141.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|.+|||||||++++.++.+.+.+.++.+.++......+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988777777777777777778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ 173 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (218)
|++++.+++.+..|+..+.... .+.|+++|+||+|+... ..++...++...+++++++||++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999997654 57899999999998532 2344566777788999999999999999999999998
Q ss_pred HHHHH
Q 027824 174 IYKIV 178 (218)
Q Consensus 174 i~~~~ 178 (218)
+.+++
T Consensus 157 ~~~~~ 161 (161)
T cd04124 157 AVSYK 161 (161)
T ss_pred HHhcC
Confidence 87653
No 63
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=3.9e-33 Score=202.58 Aligned_cols=162 Identities=40% Similarity=0.727 Sum_probs=147.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh-hhhhhhhcCCcEEEE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR-AITSAYYRGAVGALL 91 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~ 91 (218)
.+||+++|++|+|||||+++++...+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4899999999999999999999999888888888888888888889988999999999999886 578888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC---CCCHHHHH
Q 027824 92 VYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALD---ATNVENAF 167 (218)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~~~ 167 (218)
|||++++.+++.+..|+..+..... .++|+++|+||+|+...+++..+++.+++...+++|+++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 9999999999999999999877543 6799999999999988888888889999999999999999998 89999999
Q ss_pred HHHHHHH
Q 027824 168 TEVLTQI 174 (218)
Q Consensus 168 ~~i~~~i 174 (218)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998765
No 64
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=2.6e-33 Score=202.08 Aligned_cols=160 Identities=32% Similarity=0.543 Sum_probs=142.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|.+|+|||||++++..+.+...+.++.+ ++....+.+++..+.+.|||++|++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 7999999999999999999999998877777764 455667778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT 172 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (218)
|++++.+|+.+..|+..+..... .++|+++|+||+|+.....+...+...++...+++++++||+++.|++++|.++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999988876543 68999999999999776667767788888888899999999999999999999986
Q ss_pred HH
Q 027824 173 QI 174 (218)
Q Consensus 173 ~i 174 (218)
.+
T Consensus 161 ~l 162 (163)
T cd04176 161 QM 162 (163)
T ss_pred hc
Confidence 54
No 65
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=4.2e-33 Score=201.18 Aligned_cols=161 Identities=37% Similarity=0.593 Sum_probs=142.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++|+|||||++++++..+...+.++.+ +.....+..++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999988777777665 334566677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT 172 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (218)
|++++++++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...+++|+++||++|.|++++|++|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999888766533 57899999999999877777778888889888999999999999999999999988
Q ss_pred HHH
Q 027824 173 QIY 175 (218)
Q Consensus 173 ~i~ 175 (218)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 664
No 66
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-35 Score=199.90 Aligned_cols=174 Identities=40% Similarity=0.705 Sum_probs=159.0
Q ss_pred CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC---------CeEEEEEEEeCCCchhhhhh
Q 027824 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID---------NKVVKAQIWDTAGQERYRAI 78 (218)
Q Consensus 8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~ 78 (218)
-++++.+|.+.+|++|+||||++.+++.+.|...-..|.|+++..+.+.++ +..+.+++|||.|++.|+++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 478899999999999999999999999999999999999999988777652 34588999999999999999
Q ss_pred hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEcc
Q 027824 79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 157 (218)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (218)
..++++.+=+++++||+++..||-+++.|+..+..+.- .+.-+++++||+|+.+.++++.+++.+++.++++||||+||
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 99999999999999999999999999999999977654 55668999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhh
Q 027824 158 LDATNVENAFTEVLTQIYKIVSKR 181 (218)
Q Consensus 158 ~~~~~v~~~~~~i~~~i~~~~~~~ 181 (218)
-++.+|++..+.++..+++...+-
T Consensus 164 ~tg~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888765543
No 67
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=8e-33 Score=199.06 Aligned_cols=160 Identities=38% Similarity=0.748 Sum_probs=146.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|+++||||||++++++..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988888899888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ 173 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (218)
|++++++|+.+..|+..+......+.|+++++||+|+.+..+...++...++...+++++++|++++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999876655579999999999997777778788888888889999999999999999999999764
No 68
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=6.2e-33 Score=200.56 Aligned_cols=158 Identities=32% Similarity=0.467 Sum_probs=139.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++|+|||||+++++++.+...+.++.+..+ ...+..+...+.+.+||++|++.+..++..+++.++++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999998777777765444 445566777889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTD---PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (218)
|++++++++.+..|+..+..... .+.|+++|+||+|+...+++..+++..++...++.|+++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999887766432 578999999999998777788788888888889999999999999999999999
Q ss_pred HH
Q 027824 171 LT 172 (218)
Q Consensus 171 ~~ 172 (218)
++
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 75
No 69
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=3.6e-33 Score=206.03 Aligned_cols=160 Identities=33% Similarity=0.538 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
.||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.|||++|++.+..++..+++++|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 3899999999999999999999999888878876665 345667788899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcC-CeEEEEccCC
Q 027824 94 DVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHLV------------AVSTEDGKAFAEQES-LYFMETSALD 159 (218)
Q Consensus 94 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~ 159 (218)
|++++.+|+.+. .|+..+.... .+.|+++|+||+|+.+.. .+..+++.+++...+ ++|++|||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 5988887654 589999999999997643 355667788888776 7899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027824 160 ATNVENAFTEVLTQIY 175 (218)
Q Consensus 160 ~~~v~~~~~~i~~~i~ 175 (218)
|.|++++|.++++.+.
T Consensus 159 ~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 159 NRGVNEAFTEAARVAL 174 (189)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998876
No 70
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1e-32 Score=199.05 Aligned_cols=161 Identities=35% Similarity=0.577 Sum_probs=142.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 92 (218)
.+||+++|++++|||||++++++..+...+.++.+..+ .....+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 48999999999999999999999888777767765443 45566788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027824 93 YDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL 171 (218)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (218)
||++++.+++.+..|+..+.... ..+.|+++++||+|+.....+..+++.+++...+++++++||++|.|++++|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998887653 36789999999999987777777788889888899999999999999999999998
Q ss_pred HHH
Q 027824 172 TQI 174 (218)
Q Consensus 172 ~~i 174 (218)
..+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 754
No 71
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.1e-32 Score=198.30 Aligned_cols=159 Identities=33% Similarity=0.557 Sum_probs=139.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 7999999999999999999999988777777776444 556677888888999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT 172 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (218)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ..+...++.+++...+++++++||++|.|++++|+++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999888876643 6789999999999976 455667788888888999999999999999999999986
Q ss_pred HH
Q 027824 173 QI 174 (218)
Q Consensus 173 ~i 174 (218)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 54
No 72
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=8.5e-33 Score=204.69 Aligned_cols=156 Identities=29% Similarity=0.549 Sum_probs=140.5
Q ss_pred EcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCCh
Q 027824 19 IGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH 98 (218)
Q Consensus 19 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 98 (218)
+|.++||||||+++|+.+.+...+.+|.+.++....+.+++..+.+.|||++|++.|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999988888889999999888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 027824 99 ATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKI 177 (218)
Q Consensus 99 ~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~i~~~ 177 (218)
.+|+.+..|+..+.... .++|+++|+||+|+.. +.+..+. .+++...++.|++|||++|.||+++|.+|+..+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998765 6899999999999864 3344433 467788899999999999999999999999988653
No 73
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=2.2e-32 Score=197.15 Aligned_cols=161 Identities=49% Similarity=0.869 Sum_probs=148.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++++|||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 79999999999999999999999988777788888888888889998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ 173 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (218)
|++++++++.+..|+..+........|+++++||+|+........++...+....++.++++||++|.|++++|+++++.
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999987766789999999999998777777788888889889999999999999999999999886
Q ss_pred H
Q 027824 174 I 174 (218)
Q Consensus 174 i 174 (218)
+
T Consensus 162 l 162 (163)
T cd01860 162 L 162 (163)
T ss_pred h
Confidence 5
No 74
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=1.9e-32 Score=203.12 Aligned_cols=163 Identities=20% Similarity=0.276 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh--------hhhhhhhcC
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR--------AITSAYYRG 85 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~ 85 (218)
+||+++|.++||||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||+|...+. ......++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999999988888888777766677788888999999999965432 223345789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCeEEEEccCCCC
Q 027824 86 AVGALLVYDVTRHATFQNVGRWLRELREHT---DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-QESLYFMETSALDAT 161 (218)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 161 (218)
+|++|+|||++++++|+.+..|+..+.... ..++|+++|+||+|+...+.+..+++.+++. .++++|++|||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887654 3679999999999997776677777777755 468999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027824 162 NVENAFTEVLTQIYK 176 (218)
Q Consensus 162 ~v~~~~~~i~~~i~~ 176 (218)
|++++|+.++..++.
T Consensus 161 ~v~~lf~~i~~~~~~ 175 (198)
T cd04142 161 HILLLFKELLISATT 175 (198)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999987763
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=3.3e-32 Score=196.50 Aligned_cols=160 Identities=32% Similarity=0.587 Sum_probs=142.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC--cCCCCCcccceeEEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKN--EFNLESKSTIGVEFATRSLRID-NKVVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 90 (218)
+||+++|++|||||||++++..+ .+...+.++.+.++....+.++ +..+.+.+||++|++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6777888888888877777664 56789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824 91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170 (218)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (218)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+.+..++...+++.+....+++++++||+++.|++++|+.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999987764 679999999999998777777777777888888999999999999999999999
Q ss_pred HHHH
Q 027824 171 LTQI 174 (218)
Q Consensus 171 ~~~i 174 (218)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8764
No 76
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.2e-32 Score=203.42 Aligned_cols=158 Identities=26% Similarity=0.420 Sum_probs=130.6
Q ss_pred eeEEEEEcCCCCChHHHHH-HHhcCc-----CCCCCccccee-EEEEEE--------EEECCeEEEEEEEeCCCchhhhh
Q 027824 13 LFKLVLIGDSGVGKSNLLS-RFTKNE-----FNLESKSTIGV-EFATRS--------LRIDNKVVKAQIWDTAGQERYRA 77 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~-~l~~~~-----~~~~~~~t~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~ 77 (218)
.+||+++|+.+||||||+. ++.++. +...+.||.+. +.+... ..+++..+.+.||||+|++.+
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 3799999999999999995 665543 44566677752 322222 256888999999999998753
Q ss_pred hhhhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------CcccC
Q 027824 78 ITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH-------------------LVAVS 137 (218)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~ 137 (218)
+...+++++|++|+|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+.+ .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566889999999999999999999997 5998887655 5789999999999964 46788
Q ss_pred HHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824 138 TEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ 173 (218)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (218)
.++++++++.++++|+||||++|.||+++|..+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999998763
No 77
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=5.7e-32 Score=194.57 Aligned_cols=161 Identities=39% Similarity=0.695 Sum_probs=145.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++|+|||||++++++..+...+.++.+..+....+...+..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887777677767777777777788889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ 173 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (218)
|++++++++.+..|+..+......++|+++++||+|+.....+..++..+++...+++++++|++++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988776689999999999998777777788888888899999999999999999999999876
Q ss_pred H
Q 027824 174 I 174 (218)
Q Consensus 174 i 174 (218)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 78
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=9.2e-32 Score=195.53 Aligned_cols=164 Identities=38% Similarity=0.702 Sum_probs=146.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|+++||||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888788888887888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES-LYFMETSALDATNVENAFT 168 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~ 168 (218)
|++++.+++.+..|...+..... .++|+++|+||+|+..+.....++.+.+....+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999999889887655442 379999999999998666667777888888877 7899999999999999999
Q ss_pred HHHHHHHHH
Q 027824 169 EVLTQIYKI 177 (218)
Q Consensus 169 ~i~~~i~~~ 177 (218)
++++.+.+.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999988765
No 79
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=3e-32 Score=198.54 Aligned_cols=158 Identities=34% Similarity=0.579 Sum_probs=138.7
Q ss_pred EEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEEC
Q 027824 16 LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDV 95 (218)
Q Consensus 16 i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 95 (218)
|+++|++|+|||||+++|.++.+...+.++....+ ...+..++..+.+.+||++|++.+..++..+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999999887777765444 45667788889999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCCCC
Q 027824 96 TRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHL------------VAVSTEDGKAFAEQESL-YFMETSALDAT 161 (218)
Q Consensus 96 ~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 161 (218)
+++++|+.+. .|+..+.... ++.|+++|+||+|+... ..+..+++.++++..+. .|+++||+++.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999996 5998887654 68999999999999653 23777888899999886 89999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027824 162 NVENAFTEVLTQIY 175 (218)
Q Consensus 162 ~v~~~~~~i~~~i~ 175 (218)
|++++|+.+++.++
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 80
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=6e-32 Score=206.28 Aligned_cols=160 Identities=24% Similarity=0.411 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++|+|||||+++|+++.+...+.+|.+ ++....+.+++..+.+.|||++|++.|..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999877777775 555677788888899999999999999988888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhh---------cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCeEEEEccCCCCCH
Q 027824 94 DVTRHATFQNVGRWLRELREH---------TDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-ESLYFMETSALDATNV 163 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~---------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v 163 (218)
|++++++|+.+..|+..+... ...+.|+|+|+||+|+...+++..+++.+++.. .++.|+++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888653 225789999999999987677787888877764 4688999999999999
Q ss_pred HHHHHHHHHHH
Q 027824 164 ENAFTEVLTQI 174 (218)
Q Consensus 164 ~~~~~~i~~~i 174 (218)
+++|++|...+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999998744
No 81
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=8.6e-32 Score=202.93 Aligned_cols=167 Identities=26% Similarity=0.378 Sum_probs=142.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhc-CCcEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYR-GAVGALL 91 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~ 91 (218)
+||+++|++|+|||||+++|..+.+. ..+.++.+.++....+.+++..+.+.+||++|++. .....+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999888876 56666665577777888888889999999999982 23445666 9999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824 92 VYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170 (218)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (218)
|||++++.+|+.+..|+..+..... .++|+|+|+||+|+...+.+..+++.+++...+++|+++||+++.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999998876543 679999999999998878888888888988889999999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 027824 171 LTQIYKIVSKRA 182 (218)
Q Consensus 171 ~~~i~~~~~~~~ 182 (218)
+..+...+...+
T Consensus 159 ~~~~~~~~~~~~ 170 (221)
T cd04148 159 VRQIRLRRDSKE 170 (221)
T ss_pred HHHHHhhhcccc
Confidence 998876555433
No 82
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=1.2e-31 Score=194.40 Aligned_cols=161 Identities=35% Similarity=0.551 Sum_probs=143.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|.+|+|||||+++|.++.+...+.++.+.. ....+..++..+.+.+||++|++.|..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 789999999999999999999998877777777644 3566778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES-LYFMETSALDATNVENAFTEVL 171 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~ 171 (218)
|++++++++.+..|...+.... ..+.|+++++||.|+...+.+..++...+++.++ ++++++||+++.|++++|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988887643 3689999999999998777777778888888887 8899999999999999999999
Q ss_pred HHHH
Q 027824 172 TQIY 175 (218)
Q Consensus 172 ~~i~ 175 (218)
..++
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 8664
No 83
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=5.9e-32 Score=193.78 Aligned_cols=153 Identities=20% Similarity=0.350 Sum_probs=130.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|+.|+|||||+.+++.+.+...+.++ +..+ ...+.+++..+.+.+||++|++. ..+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999998887766444 3333 46678888889999999999965 24668899999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CCcccCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLR--HLVAVSTEDGKAFAEQE-SLYFMETSALDATNVENAFTE 169 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~ 169 (218)
|++++++|+.+..|+..+..... .++|+++|+||.|+. ..+++..++++++++.. ++.|++|||++|.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999987654 678999999999985 35778888889999876 589999999999999999999
Q ss_pred HHHH
Q 027824 170 VLTQ 173 (218)
Q Consensus 170 i~~~ 173 (218)
+++.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8754
No 84
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=8.7e-32 Score=196.01 Aligned_cols=157 Identities=32% Similarity=0.562 Sum_probs=137.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++|+|||||+.++.++.+...+.+|. .+.....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999988888777765 4555566778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEEEEccCC
Q 027824 94 DVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH------------LVAVSTEDGKAFAEQESL-YFMETSALD 159 (218)
Q Consensus 94 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (218)
|++++++|+.+. .|+..+.... .+.|+++++||.|+.. .+.+..+++..+++..+. .|+++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999985 6888887543 5799999999999863 456788889999999887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 027824 160 ATNVENAFTEVLT 172 (218)
Q Consensus 160 ~~~v~~~~~~i~~ 172 (218)
|.|++++|+.++.
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998864
No 85
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=1.6e-31 Score=192.30 Aligned_cols=159 Identities=50% Similarity=0.862 Sum_probs=142.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++++|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777788888887777778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT 172 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (218)
|++++.+++.+..|+..+..... .+.|+++++||+|+.. .....++..+++...+++++++|+++|.|++++|+.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 99999999999999998877653 6899999999999973 345667788888889999999999999999999999887
Q ss_pred H
Q 027824 173 Q 173 (218)
Q Consensus 173 ~ 173 (218)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 86
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.9e-31 Score=192.43 Aligned_cols=164 Identities=42% Similarity=0.794 Sum_probs=147.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 90 (218)
...++|+++|++|||||||++++.++.+...+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988887777788888888888888888889999999999999998899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824 91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170 (218)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (218)
+|||++++.+++.+..|+..+......+.|+++|+||+|+...+++..+..+.+.+....+++++||++|.|++++|++|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999998877666689999999999998777777777788887778899999999999999999999
Q ss_pred HHHH
Q 027824 171 LTQI 174 (218)
Q Consensus 171 ~~~i 174 (218)
...+
T Consensus 165 ~~~~ 168 (169)
T cd04114 165 ACRL 168 (169)
T ss_pred HHHh
Confidence 8754
No 87
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=6.8e-34 Score=188.48 Aligned_cols=161 Identities=45% Similarity=0.733 Sum_probs=150.5
Q ss_pred EEEcCCCCChHHHHHHHhcCcCCC-CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEEC
Q 027824 17 VLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDV 95 (218)
Q Consensus 17 ~l~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 95 (218)
+++|++++|||+|+-++..+.|-. .-..|.|+++..+.+..++..+++++|||.|++.|++....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 378999999999999998877654 4458999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027824 96 TRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY 175 (218)
Q Consensus 96 ~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~i~ 175 (218)
.++.||++.+.|+.++..+....+.+.+++||+|+.+++.+..++++.++..+++||.|+||++|.+++..|-.|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999998888899999999999998999999999999999999999999999999999999998876
Q ss_pred HH
Q 027824 176 KI 177 (218)
Q Consensus 176 ~~ 177 (218)
+.
T Consensus 161 k~ 162 (192)
T KOG0083|consen 161 KL 162 (192)
T ss_pred Hh
Confidence 64
No 88
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=7.4e-32 Score=194.91 Aligned_cols=160 Identities=35% Similarity=0.530 Sum_probs=137.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh-hhhhhhhhhcCCcEEEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER-YRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~ 93 (218)
||+++|++|+|||||+++++.+.+...+.++....+ ...+.+++..+.+.+||++|++. +......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999999888777766654333 55667788889999999999885 3445667889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC-CCHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHT--DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDA-TNVENAFTEV 170 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~v~~~~~~i 170 (218)
|++++++|+.+..|+..+.... ..+.|+++|+||+|+...+.+..+++.+++...+++|+++||+++ .|++++|..+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999998887754 357999999999999877778888889999999999999999999 5999999999
Q ss_pred HHHHH
Q 027824 171 LTQIY 175 (218)
Q Consensus 171 ~~~i~ 175 (218)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 87653
No 89
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=3.6e-31 Score=189.38 Aligned_cols=158 Identities=54% Similarity=0.912 Sum_probs=146.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888889888888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL 171 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (218)
|++++++++.+..|+..+......+.|+++++||+|+..+.....++.++++...+.+++++|++++.|++++|.+|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999999887767899999999999976667778889999998999999999999999999999886
No 90
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.1e-31 Score=194.72 Aligned_cols=163 Identities=19% Similarity=0.208 Sum_probs=141.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 89 (218)
.+.+||+++|.+|||||||+++|+++.+. ..+.+|.+..+....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35799999999999999999999999998 78889988888777788888888999999999999998999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCHHHHHH
Q 027824 90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFT 168 (218)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~ 168 (218)
++|||++++.+++.+..|+..+.. ..++|+++|+||+|+.+...+...+..++++.+++. ++++||+++.|++++|.
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 999999999999999888886633 247899999999999765544444567777878874 79999999999999999
Q ss_pred HHHHHHH
Q 027824 169 EVLTQIY 175 (218)
Q Consensus 169 ~i~~~i~ 175 (218)
.+.+.+.
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9988764
No 91
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=2.8e-31 Score=193.44 Aligned_cols=159 Identities=32% Similarity=0.510 Sum_probs=138.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++|+|||||+++|..+.+...+.++.... ....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 589999999999999999999999877776776433 3446677888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCC
Q 027824 94 DVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHL------------VAVSTEDGKAFAEQESL-YFMETSALD 159 (218)
Q Consensus 94 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (218)
|++++.+|+.+. .|+..+... ..+.|+++++||+|+.+. ..++.+++..+++..+. +|++|||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999985 588888765 478999999999998543 35777888999998886 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027824 160 ATNVENAFTEVLTQI 174 (218)
Q Consensus 160 ~~~v~~~~~~i~~~i 174 (218)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998865
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.98 E-value=3.8e-30 Score=185.51 Aligned_cols=161 Identities=34% Similarity=0.529 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++|+|||||+++++...+...+.++.+.. .......++..+.+.+||++|+..+...+..+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999988877776666543 3455667888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT 172 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (218)
|++++.+++.+..|+..+..... .++|+++|+||+|+.........+...+...++++++++||+++.|++++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999888877643 67999999999999775556667778888888999999999999999999999988
Q ss_pred HHH
Q 027824 173 QIY 175 (218)
Q Consensus 173 ~i~ 175 (218)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 764
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=3.8e-30 Score=184.72 Aligned_cols=158 Identities=34% Similarity=0.558 Sum_probs=141.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 94 (218)
||+++|++|||||||++++++..+...+.++.. +.....+..++..+.+.+||+||+..+..++..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777766665 5556667777778899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824 95 VTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQ 173 (218)
Q Consensus 95 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (218)
++++++++.+..|+..+..... .+.|+++++||+|+.....+..+++++++...+.+++++|++++.|++++|++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999888877665 689999999999998877788888999999888999999999999999999999875
No 94
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=1.9e-30 Score=190.75 Aligned_cols=164 Identities=34% Similarity=0.515 Sum_probs=151.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 91 (218)
..+||+++|.+|+|||+|+.+|....|...|.||.. +.+.+.+.+++..+.+.|+||+|++++..+...++++.+++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 358999999999999999999999999999999987 6668888889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824 92 VYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170 (218)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (218)
||+++++.||+.+..++..+..... ..+|+++|+||+|+...+.+..++++.++..++++|+|+||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999888844333 668999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 027824 171 LTQIYK 176 (218)
Q Consensus 171 ~~~i~~ 176 (218)
+..+..
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 887755
No 95
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=5.1e-30 Score=186.95 Aligned_cols=159 Identities=30% Similarity=0.534 Sum_probs=135.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
.||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999998887878776554 345677888899999999999999988888899999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEEccCC
Q 027824 94 DVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHL------------VAVSTEDGKAFAEQESL-YFMETSALD 159 (218)
Q Consensus 94 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (218)
|++++++|+.+. .|+..+.... .+.|+++|+||+|+... ..+...++++++...+. .+++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999985 5888776543 57899999999998542 23456778888888765 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027824 160 ATNVENAFTEVLTQI 174 (218)
Q Consensus 160 ~~~v~~~~~~i~~~i 174 (218)
|.|++++|.++.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998654
No 96
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=6.5e-30 Score=187.70 Aligned_cols=167 Identities=20% Similarity=0.331 Sum_probs=133.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI-DNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 91 (218)
.+||+++|++|||||||++++..+.+... .+|.+.+.....+.. ++..+.+.+||++|++.+..++..+++++|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 48999999999999999999998887644 577776665555543 4456889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------cCCeEEEEccCCCCCHH
Q 027824 92 VYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ------ESLYFMETSALDATNVE 164 (218)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~v~ 164 (218)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+. +..++..++... .+++++++||+++.|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 9999999999988888887765432 67999999999998653 333444444321 13568999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 027824 165 NAFTEVLTQIYKIVSKRA 182 (218)
Q Consensus 165 ~~~~~i~~~i~~~~~~~~ 182 (218)
++|.+|.+.+.+.+....
T Consensus 160 ~l~~~l~~~l~~~~~~~~ 177 (183)
T cd04152 160 EGLEKLYEMILKRRKMLR 177 (183)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999998876655443
No 97
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=3.6e-30 Score=186.51 Aligned_cols=154 Identities=18% Similarity=0.357 Sum_probs=124.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 91 (218)
..+||+++|++++|||||+++|..+.+. .+.+|.+.++. .+.. ..+.+.+||++|++.+..++..+++++|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 3589999999999999999999887764 35577776653 2333 45789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCeEEEEccCCCCCHHH
Q 027824 92 VYDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-----ESLYFMETSALDATNVEN 165 (218)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~ 165 (218)
|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+. +..++++++... ....++++||++|.|+++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 999999999999888777665432 257899999999999652 445566655421 234789999999999999
Q ss_pred HHHHHHH
Q 027824 166 AFTEVLT 172 (218)
Q Consensus 166 ~~~~i~~ 172 (218)
+|++|.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 98
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=6e-31 Score=189.89 Aligned_cols=153 Identities=20% Similarity=0.327 Sum_probs=127.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 94 (218)
.|+++|++|+|||||+++|.++.+...+.+|.+... ..++...+.+.+||++|++.+..++..+++++|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 389999999999999999999888777778877543 2344556889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH----HHHHHHHHHcCCeEEEEccCC------CCCHH
Q 027824 95 VTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVST----EDGKAFAEQESLYFMETSALD------ATNVE 164 (218)
Q Consensus 95 ~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~v~ 164 (218)
.+++.++..+..|+..+.... .++|+++|+||.|+...+.+.. .++..++.+.++.++++||++ ++||+
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999999988886544 6899999999999977554332 224555666788899999988 99999
Q ss_pred HHHHHHHH
Q 027824 165 NAFTEVLT 172 (218)
Q Consensus 165 ~~~~~i~~ 172 (218)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998864
No 99
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=2.1e-29 Score=184.56 Aligned_cols=163 Identities=34% Similarity=0.508 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
.||+++|.+|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++++..++..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999888766666664443 455667777888999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLT 172 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (218)
|+++..+++.+..|+..+..... .+.|+++++||+|+...+.+..++...++...+.+++++||+++.|++++|.++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999998888766543 67899999999999876667777778888888899999999999999999999998
Q ss_pred HHHHH
Q 027824 173 QIYKI 177 (218)
Q Consensus 173 ~i~~~ 177 (218)
.+.+.
T Consensus 161 ~~~~~ 165 (180)
T cd04137 161 EIEKV 165 (180)
T ss_pred HHHHh
Confidence 77654
No 100
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.97 E-value=3.6e-32 Score=189.01 Aligned_cols=173 Identities=30% Similarity=0.545 Sum_probs=164.4
Q ss_pred CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC
Q 027824 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA 86 (218)
Q Consensus 7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 86 (218)
+.+.+..+|++++|+.++||||+|++++.+-|...+..++++++....+.+..+.+.+.+||++|+++++.+..+|++++
T Consensus 14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga 93 (246)
T KOG4252|consen 14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA 93 (246)
T ss_pred chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc
Confidence 46788899999999999999999999999999999999999999888888888888999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824 87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA 166 (218)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (218)
.+-++||+-+|+.||+.+..|++.+.... ..+|.++|-||+|+.++.++...+++.+++.....++.+|++...|+..+
T Consensus 94 qa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~v 172 (246)
T KOG4252|consen 94 QASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHV 172 (246)
T ss_pred cceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence 99999999999999999999999998766 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027824 167 FTEVLTQIYKIVSK 180 (218)
Q Consensus 167 ~~~i~~~i~~~~~~ 180 (218)
|.+|++.+.++..+
T Consensus 173 F~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 173 FAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888665
No 101
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1.4e-29 Score=186.60 Aligned_cols=163 Identities=35% Similarity=0.559 Sum_probs=137.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
.||+++|++|+|||||++++..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......+++.+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998888776666654444 445667778889999999999988877777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC----------CcccCHHHHHHHHHHcCC-eEEEEccCCCC
Q 027824 94 DVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRH----------LVAVSTEDGKAFAEQESL-YFMETSALDAT 161 (218)
Q Consensus 94 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 161 (218)
|++++++|+.+. .|+..+.... .++|+++|+||+|+.. .+.+..+++.++++..+. .||+|||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999996 5999887654 5699999999999854 244556778888988885 79999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 027824 162 NVENAFTEVLTQIYKIV 178 (218)
Q Consensus 162 ~v~~~~~~i~~~i~~~~ 178 (218)
|++++|+++.+.++..+
T Consensus 160 ~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 160 GVDDVFEAATRAALLVR 176 (187)
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999998775543
No 102
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=2e-29 Score=187.40 Aligned_cols=160 Identities=29% Similarity=0.429 Sum_probs=135.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 94 (218)
||+++|++|+|||||+++|++..+...+.++.. +.....+.+.+..+.+.+||++|+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988776666653 4555667778888899999999999999998899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC-CcccCHHHHHHHHH-HcCCeEEEEccCCCCCHHHHHHHHH
Q 027824 95 VTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRH-LVAVSTEDGKAFAE-QESLYFMETSALDATNVENAFTEVL 171 (218)
Q Consensus 95 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (218)
++++.+++.+..|+..+..... .++|+|+|+||.|+.. ...+..++..+... ..+.+++++||++|.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888877654 5799999999999965 45555555554443 4568899999999999999999999
Q ss_pred HHHH
Q 027824 172 TQIY 175 (218)
Q Consensus 172 ~~i~ 175 (218)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8664
No 103
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=2.4e-30 Score=188.69 Aligned_cols=156 Identities=18% Similarity=0.349 Sum_probs=123.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 91 (218)
..+||+++|.+++|||||++++..+.+. .+.+|.+.++. .+.. ..+.+.+||++|++.+..++..+++++|++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 4599999999999999999999877764 45677776653 2333 34789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHHH
Q 027824 92 VYDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-----QESLYFMETSALDATNVEN 165 (218)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 165 (218)
|||++++.+++....|+..+.... ..++|++||+||.|+.+.. ..++..+... ...+.++++||++|.|+++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 999999999999988887775432 2578999999999996532 2233322221 1234577899999999999
Q ss_pred HHHHHHHHH
Q 027824 166 AFTEVLTQI 174 (218)
Q Consensus 166 ~~~~i~~~i 174 (218)
+|++|.+.+
T Consensus 165 ~~~~l~~~~ 173 (175)
T smart00177 165 GLTWLSNNL 173 (175)
T ss_pred HHHHHHHHh
Confidence 999997764
No 104
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.5e-29 Score=185.27 Aligned_cols=159 Identities=17% Similarity=0.330 Sum_probs=124.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 90 (218)
...+||+++|.++||||||++++..+.+. .+.+|.+.+.. .+.. ..+.+.+||++|++.+..++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34589999999999999999999987775 45677776543 3333 3578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----CCeEEEEccCCCCCHH
Q 027824 91 LVYDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE-----SLYFMETSALDATNVE 164 (218)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~ 164 (218)
+|||++++++++.+..|+..+.... ..+.|++|++||+|+.+.. ..++..+...-. .+.++++||++|+|++
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 9999999999998887777664322 2578999999999997643 333333322111 1246689999999999
Q ss_pred HHHHHHHHHHHH
Q 027824 165 NAFTEVLTQIYK 176 (218)
Q Consensus 165 ~~~~~i~~~i~~ 176 (218)
++|++|.+.+.+
T Consensus 168 e~~~~l~~~~~~ 179 (181)
T PLN00223 168 EGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHhh
Confidence 999999887654
No 105
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=1.4e-29 Score=183.74 Aligned_cols=155 Identities=21% Similarity=0.389 Sum_probs=126.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 94 (218)
||+++|.++||||||+++|.+..+.. +.+|.+.++. .+.. ..+.+.+||+||+..+...+..+++++|++++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999987653 5677665553 2333 35789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC------CeEEEEccCCCCCHHHHH
Q 027824 95 VTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES------LYFMETSALDATNVENAF 167 (218)
Q Consensus 95 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~ 167 (218)
++++.+++.+..|+..+..... .+.|+++++||+|+.+ .+..+++++++...+ +.++++||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 9999999999999888865432 5689999999999964 355666766654322 368899999999999999
Q ss_pred HHHHHHHHH
Q 027824 168 TEVLTQIYK 176 (218)
Q Consensus 168 ~~i~~~i~~ 176 (218)
++|.+.+..
T Consensus 154 ~~l~~~~~~ 162 (169)
T cd04158 154 DWLSRQLVA 162 (169)
T ss_pred HHHHHHHhh
Confidence 999886654
No 106
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=2.9e-30 Score=185.43 Aligned_cols=152 Identities=18% Similarity=0.384 Sum_probs=119.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|.++||||||++++..+.+. .+.+|.+.+.. .+.. ..+.+.+||++|++.+..++..+++++|++||||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999887775 45677776543 2333 3578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHH----HcCCeEEEEccCCCCCHHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREH-TDPNIIVMLIGNKTDLRHLVAVSTED-GKAFAE----QESLYFMETSALDATNVENAF 167 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~----~~~~~~~~~Sa~~~~~v~~~~ 167 (218)
|++++.+++.+..|+..+... ...+.|+++++||+|+.+.. ..++ ...+.. ..++.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999998877776443 22568999999999996532 2222 222211 124457899999999999999
Q ss_pred HHHHH
Q 027824 168 TEVLT 172 (218)
Q Consensus 168 ~~i~~ 172 (218)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 107
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=187.82 Aligned_cols=164 Identities=33% Similarity=0.562 Sum_probs=149.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID-NKVVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 89 (218)
...+|++++|+..+|||+|+..+..+.|+..|.||.- +.+...+.++ +..+.+.+|||.|+++|+.+++..+.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3468999999999999999999999999999999996 6667778885 9999999999999999999998899999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEE
Q 027824 90 LLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHL------------VAVSTEDGKAFAEQESL-YFMET 155 (218)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 155 (218)
++||++.+++||+++ ..|+.++..+. ++.|+|+||+|.||..+ ..+..+++++++++.|+ .|+||
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999998 55999998887 89999999999999743 36788999999999995 69999
Q ss_pred ccCCCCCHHHHHHHHHHHHHH
Q 027824 156 SALDATNVENAFTEVLTQIYK 176 (218)
Q Consensus 156 Sa~~~~~v~~~~~~i~~~i~~ 176 (218)
||++..|++++|+..+..++.
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhc
Confidence 999999999999999998866
No 108
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=3.2e-29 Score=185.53 Aligned_cols=148 Identities=26% Similarity=0.387 Sum_probs=127.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC-----CeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID-----NKVVKAQIWDTAGQERYRAITSAYYRGAVG 88 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 88 (218)
+||+++|+.++|||||+++|.++.+...+.+|.+.++..+.+.++ +..+.+.|||++|++.|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888999988877777664 467899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhc-------------------CCCCcEEEEEeCCCCCCCcccCHHH----HHHHH
Q 027824 89 ALLVYDVTRHATFQNVGRWLRELREHT-------------------DPNIIVMLIGNKTDLRHLVAVSTED----GKAFA 145 (218)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~ 145 (218)
+|+|||++++.+|+.+..|+..+.... ..++|+|||+||.|+.+++.+..+. ...++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999996632 2468999999999997766555443 34667
Q ss_pred HHcCCeEEEEccCCCC
Q 027824 146 EQESLYFMETSALDAT 161 (218)
Q Consensus 146 ~~~~~~~~~~Sa~~~~ 161 (218)
.+.+++.++.++.+..
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 8899999998888644
No 109
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=1.5e-28 Score=184.95 Aligned_cols=166 Identities=30% Similarity=0.532 Sum_probs=145.2
Q ss_pred CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCc
Q 027824 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAV 87 (218)
Q Consensus 8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 87 (218)
.+....+||+++|++|||||||+++++.+.+...+.+|.+.++....+..++..+.+.+||++|++.+..++..++.+++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 35566799999999999999999999988888888899999888888878888999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027824 88 GALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167 (218)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (218)
++++|||++++.++..+..|+..+.... .+.|+++++||+|+.+. .+.. +...++...++.++++|+++|.|++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999987654 57899999999998643 2332 3346777788999999999999999999
Q ss_pred HHHHHHHHH
Q 027824 168 TEVLTQIYK 176 (218)
Q Consensus 168 ~~i~~~i~~ 176 (218)
.+|++.+..
T Consensus 161 ~~ia~~l~~ 169 (215)
T PTZ00132 161 LWLARRLTN 169 (215)
T ss_pred HHHHHHHhh
Confidence 999987764
No 110
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=3.6e-29 Score=182.22 Aligned_cols=158 Identities=19% Similarity=0.347 Sum_probs=126.0
Q ss_pred CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCc
Q 027824 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAV 87 (218)
Q Consensus 8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 87 (218)
.+.+..++|+++|++|+|||||+++|.+..+. .+.+|.+.. ...+.++ .+.+.+||+||++.+..++..+++++|
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d 83 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTD 83 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 34456699999999999999999999987553 444666543 3344444 467899999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCC
Q 027824 88 GALLVYDVTRHATFQNVGRWLRELREH-TDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-----QESLYFMETSALDAT 161 (218)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 161 (218)
++++|||++++.++.....|+..+... ...++|+++|+||+|+.+.. ..++..++.. ..+++++++||++|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 161 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGE 161 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence 999999999999999988888777543 23679999999999997643 3445555543 246789999999999
Q ss_pred CHHHHHHHHHH
Q 027824 162 NVENAFTEVLT 172 (218)
Q Consensus 162 ~v~~~~~~i~~ 172 (218)
|++++|++++.
T Consensus 162 gi~~l~~~l~~ 172 (173)
T cd04154 162 GLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 111
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=1.2e-28 Score=178.92 Aligned_cols=157 Identities=33% Similarity=0.597 Sum_probs=132.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++|+|||||+++|+++.+...+.++.. +........++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999988666666654 334555667788899999999999988888888889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc-----------ccCHHHHHHHHHHcCC-eEEEEccCCC
Q 027824 94 DVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHLV-----------AVSTEDGKAFAEQESL-YFMETSALDA 160 (218)
Q Consensus 94 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 160 (218)
|++++.++.... .|+..+.... .+.|+++|+||+|+.... .+..+++.+++..++. +|+++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999999998774 5777776654 589999999999986544 3456778888888887 8999999999
Q ss_pred CCHHHHHHHHHH
Q 027824 161 TNVENAFTEVLT 172 (218)
Q Consensus 161 ~~v~~~~~~i~~ 172 (218)
.|++++|.+|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 112
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=8.8e-29 Score=181.43 Aligned_cols=159 Identities=21% Similarity=0.353 Sum_probs=123.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 91 (218)
..+||+++|+++||||||++++..+.+.. +.+|.+.++. .+.. ..+.+.+||++|++.+..++..+++++|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 35899999999999999999998877754 5577776553 3333 45789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHHH
Q 027824 92 VYDVTRHATFQNVGRWLRELREH-TDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-----QESLYFMETSALDATNVEN 165 (218)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 165 (218)
|||++++++++.+..++..+... ...++|++||+||.|+.+.. ..++...... ...+.++++||++|.|+++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 99999999999888777766432 22568999999999986532 2222222211 1223577999999999999
Q ss_pred HHHHHHHHHHHH
Q 027824 166 AFTEVLTQIYKI 177 (218)
Q Consensus 166 ~~~~i~~~i~~~ 177 (218)
+|++|.+.+.+.
T Consensus 169 ~~~~l~~~i~~~ 180 (182)
T PTZ00133 169 GLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHh
Confidence 999999877653
No 113
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.3e-28 Score=178.13 Aligned_cols=160 Identities=29% Similarity=0.378 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|++|+|||||+++|.++.+...+..+ ... ......+.+..+.+.+||++|.+.+...+..+++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999999886554332 222 2344455677789999999999888877778889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHc-C-CeEEEEccCCCCCHHHHHH
Q 027824 94 DVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHLVAVS--TEDGKAFAEQE-S-LYFMETSALDATNVENAFT 168 (218)
Q Consensus 94 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~-~-~~~~~~Sa~~~~~v~~~~~ 168 (218)
|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..... .++...++..+ + .+++++||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999985 5888777654 589999999999997654421 23333333333 2 3799999999999999999
Q ss_pred HHHHHHHH
Q 027824 169 EVLTQIYK 176 (218)
Q Consensus 169 ~i~~~i~~ 176 (218)
.+.+.+.+
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887653
No 114
>PTZ00099 rab6; Provisional
Probab=99.96 E-value=1.1e-27 Score=174.19 Aligned_cols=141 Identities=35% Similarity=0.677 Sum_probs=128.3
Q ss_pred CcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhc
Q 027824 36 NEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHT 115 (218)
Q Consensus 36 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 115 (218)
+.|...+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35667788999999988888899999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027824 116 DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 176 (218)
Q Consensus 116 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~i~~ 176 (218)
..++|++||+||+|+.+.+.+..+++..++..++..|+++||++|.|++++|++|++.+.+
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5678999999999998777788888899999899999999999999999999999988755
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=1.9e-28 Score=176.39 Aligned_cols=152 Identities=16% Similarity=0.324 Sum_probs=118.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcC-CCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEF-NLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+|+++|+++||||||+++|.+..+ ...+.+|.+..... +. ...+.+.+||+||++.+..++..+++++|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 44556777654432 22 23578899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHT---DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-----QESLYFMETSALDATNVEN 165 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 165 (218)
|++++.++..+..|+..+.... ..++|+++|+||+|+..... .++..+... ....+++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999988888888775532 25799999999999965322 222222211 1234689999999999999
Q ss_pred HHHHHHH
Q 027824 166 AFTEVLT 172 (218)
Q Consensus 166 ~~~~i~~ 172 (218)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=1.2e-27 Score=174.43 Aligned_cols=153 Identities=20% Similarity=0.381 Sum_probs=121.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 92 (218)
.++|+++|++++|||||++++..+.+.. +.++.+.++. .+..+ .+.+.+||+||++.+...+..+++++|++++|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999887764 4567665543 33333 47899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHH-HHH----HHcCCeEEEEccCCCCCHHHH
Q 027824 93 YDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGK-AFA----EQESLYFMETSALDATNVENA 166 (218)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~~v~~~ 166 (218)
+|+++++++.....|+..+..... .++|+++++||+|+.+. ...++.. .+. ...+++++++||++|.|++++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence 999999999888777776654332 57899999999998653 2333322 222 224567999999999999999
Q ss_pred HHHHHH
Q 027824 167 FTEVLT 172 (218)
Q Consensus 167 ~~~i~~ 172 (218)
|++|..
T Consensus 168 ~~~l~~ 173 (174)
T cd04153 168 LDWIAS 173 (174)
T ss_pred HHHHhc
Confidence 999864
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=2.9e-28 Score=176.41 Aligned_cols=153 Identities=23% Similarity=0.363 Sum_probs=121.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 94 (218)
+|+++|.++||||||++++.+. +...+.+|.+... ..+... .+.+.+||++|++.+..++..+++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999977 6666778877653 344443 4778999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHH-H---HHHHHHHc--CCeEEEEccCCC------C
Q 027824 95 VTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTE-D---GKAFAEQE--SLYFMETSALDA------T 161 (218)
Q Consensus 95 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~-~---~~~~~~~~--~~~~~~~Sa~~~------~ 161 (218)
++++.+++.+..|+..+..... .++|+++|+||.|+.+....... + ..+++.+. .+.+++|||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 9999999999999988876533 57899999999999765422111 1 12223222 346788999998 8
Q ss_pred CHHHHHHHHHH
Q 027824 162 NVENAFTEVLT 172 (218)
Q Consensus 162 ~v~~~~~~i~~ 172 (218)
|+++.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 118
>PLN00023 GTP-binding protein; Provisional
Probab=99.96 E-value=3e-27 Score=183.17 Aligned_cols=144 Identities=24% Similarity=0.442 Sum_probs=124.7
Q ss_pred CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECC-------------eEEEEEEEeCCCch
Q 027824 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDN-------------KVVKAQIWDTAGQE 73 (218)
Q Consensus 7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~ 73 (218)
..+....+||+|+|+.|||||||+++|.++.+...+.+|.+.++..+.+.+++ ..+.+.|||++|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 34556679999999999999999999999999888889999988777776642 46889999999999
Q ss_pred hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC------------CCCcEEEEEeCCCCCCCc---c---
Q 027824 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD------------PNIIVMLIGNKTDLRHLV---A--- 135 (218)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~ivv~nK~Dl~~~~---~--- 135 (218)
.|..++..++++++++|+|||++++.+|+.+..|+..+..... .++|++||+||+|+...+ .
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~ 174 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSG 174 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccc
Confidence 9999999999999999999999999999999999999987531 258999999999996542 2
Q ss_pred cCHHHHHHHHHHcCC
Q 027824 136 VSTEDGKAFAEQESL 150 (218)
Q Consensus 136 ~~~~~~~~~~~~~~~ 150 (218)
+..+++++|+.++++
T Consensus 175 ~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 175 NLVDAARQWVEKQGL 189 (334)
T ss_pred ccHHHHHHHHHHcCC
Confidence 357889999999774
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=9.7e-28 Score=172.40 Aligned_cols=152 Identities=24% Similarity=0.437 Sum_probs=119.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 94 (218)
+|+++|++|+|||||+++|.+..+... .+|.+.++ ..+... ..+.+.+||++|++.+...+..+++.+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999887543 46666543 333333 34789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHH------HHHcCCeEEEEccCCCCCHHHHH
Q 027824 95 VTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAF------AEQESLYFMETSALDATNVENAF 167 (218)
Q Consensus 95 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~v~~~~ 167 (218)
++++.++..+..|+..+..... .+.|+++|+||+|+.... ..++.... ....++++++|||++|+|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 9999999998888877755432 579999999999986432 22222222 12234579999999999999999
Q ss_pred HHHHH
Q 027824 168 TEVLT 172 (218)
Q Consensus 168 ~~i~~ 172 (218)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 120
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.96 E-value=1.7e-27 Score=172.34 Aligned_cols=152 Identities=20% Similarity=0.381 Sum_probs=118.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcC------CCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEF------NLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG 88 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 88 (218)
+|+++|++|+|||||++++.+... ...+.+|.+.++ ..+.++ .+.+.+||+||++.+..++..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976432 223335554444 334444 4688999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-------cCCeEEEEccCCC
Q 027824 89 ALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-------ESLYFMETSALDA 160 (218)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 160 (218)
+++|+|++++++++....|+..+..... .+.|+++++||+|+... ...++..++... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 9999999999999888888877765432 67999999999998653 333445544433 3468999999999
Q ss_pred CCHHHHHHHHHH
Q 027824 161 TNVENAFTEVLT 172 (218)
Q Consensus 161 ~~v~~~~~~i~~ 172 (218)
.|++++|++|.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999865
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=6.3e-28 Score=173.12 Aligned_cols=151 Identities=21% Similarity=0.351 Sum_probs=115.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 94 (218)
||+++|++++|||||++++..+.+.. +.+|.+.+.. .+.. ..+.+.+||+||++.+..++..+++.+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998877643 4466655443 2333 34789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHHHHHH
Q 027824 95 VTRHATFQNVGRWLRELRE-HTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-----QESLYFMETSALDATNVENAFT 168 (218)
Q Consensus 95 ~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~ 168 (218)
++++.++.....|+..+.. ....++|+++|+||+|+.+.. ...+..+... ..+.+++++||+++.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9999888777665554433 222579999999999996533 1222222111 1235799999999999999999
Q ss_pred HHHH
Q 027824 169 EVLT 172 (218)
Q Consensus 169 ~i~~ 172 (218)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9864
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.96 E-value=1.5e-27 Score=171.12 Aligned_cols=151 Identities=20% Similarity=0.375 Sum_probs=120.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 94 (218)
||+++|.+|||||||++++++... ..+.++.+.... .+.+. .+.+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999874 344566665443 33333 4678999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHHHHHH
Q 027824 95 VTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-----QESLYFMETSALDATNVENAFT 168 (218)
Q Consensus 95 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~ 168 (218)
++++.++.....|+..+.... ..+.|+++++||+|+.... ..++..+... ...++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999888877775543 3689999999999987643 2233333322 2456899999999999999999
Q ss_pred HHHH
Q 027824 169 EVLT 172 (218)
Q Consensus 169 ~i~~ 172 (218)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9864
No 123
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=4e-27 Score=173.92 Aligned_cols=155 Identities=23% Similarity=0.340 Sum_probs=124.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 91 (218)
..++|+++|++|||||||++++.+..+. .+.+|.+.. ...+.+++ +.+.+||+||+..+...+..+++++|++++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988764 455665543 33444444 678999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH----------------cCCeEEE
Q 027824 92 VYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ----------------ESLYFME 154 (218)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~ 154 (218)
|+|+++..+++....|+..+..... .+.|+++++||+|+.. .+..++.+++... ..+.+++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM 170 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence 9999999999888888877765433 6799999999999864 4555666666542 2246899
Q ss_pred EccCCCCCHHHHHHHHHHH
Q 027824 155 TSALDATNVENAFTEVLTQ 173 (218)
Q Consensus 155 ~Sa~~~~~v~~~~~~i~~~ 173 (218)
|||++++|++++|++|.+.
T Consensus 171 ~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 171 CSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eEecCCCChHHHHHHHHhh
Confidence 9999999999999999764
No 124
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.95 E-value=1.5e-26 Score=158.76 Aligned_cols=164 Identities=18% Similarity=0.304 Sum_probs=131.5
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG 88 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 88 (218)
.++..++|+++|..|+||||++++|.+... ....||.+++.. ++.+ +.+++.+||.+|+...++.|++|+.++|+
T Consensus 12 ~kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~gf~Ik--tl~~--~~~~L~iwDvGGq~~lr~~W~nYfestdg 86 (185)
T KOG0073|consen 12 LKEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLGFQIK--TLEY--KGYTLNIWDVGGQKTLRSYWKNYFESTDG 86 (185)
T ss_pred hhhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccceeeE--EEEe--cceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence 355689999999999999999999988774 344477775544 3333 44788999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCH----HHHHHHHHHcCCeEEEEccCCCCCH
Q 027824 89 ALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVST----EDGKAFAEQESLYFMETSALDATNV 163 (218)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~~v 163 (218)
+|+|+|.+|+..++.....+..+..... .+.|++|++||.|+........ ....++++...++++.||+.+|+++
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 9999999999988887666666544322 7899999999999974322111 1134555678899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027824 164 ENAFTEVLTQIYKI 177 (218)
Q Consensus 164 ~~~~~~i~~~i~~~ 177 (218)
.+-++|++..+.++
T Consensus 167 ~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 167 LEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999874
No 125
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=1e-26 Score=169.30 Aligned_cols=158 Identities=26% Similarity=0.461 Sum_probs=126.9
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 89 (218)
....++|+++|..+||||||++++..+.... ..||.+.+.. .+.+.+ +.+.+||.+|+..++.+|..++.++|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~--~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIE--EIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEE--EEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccc--eeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 3667999999999999999999998766543 5577776643 444454 6789999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------cCCeEEEEccCCCCC
Q 027824 90 LLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ------ESLYFMETSALDATN 162 (218)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~ 162 (218)
|||+|.++.+.+......+..+..... .+.|++|++||.|+.+. ...++....... ..+.++.|||.+|+|
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 999999999888888777777655432 68999999999998763 344455444322 344589999999999
Q ss_pred HHHHHHHHHHHH
Q 027824 163 VENAFTEVLTQI 174 (218)
Q Consensus 163 v~~~~~~i~~~i 174 (218)
+.+.|+||.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999998864
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=3.1e-26 Score=168.31 Aligned_cols=156 Identities=19% Similarity=0.261 Sum_probs=121.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 90 (218)
...++|+++|.+|||||||++++.++.+.. +.+|.+.+ ...+... .+++.+||++|+..+..++..+++++|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 445999999999999999999999876643 33454433 2333333 367899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------------cCCeEEEEcc
Q 027824 91 LVYDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ------------ESLYFMETSA 157 (218)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 157 (218)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.. .++.++.++...- ....+++|||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 9999999999988888777765432 26789999999999864 3444555444321 1235899999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027824 158 LDATNVENAFTEVLTQ 173 (218)
Q Consensus 158 ~~~~~v~~~~~~i~~~ 173 (218)
+++.|++++++||...
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999764
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=5.6e-26 Score=162.52 Aligned_cols=152 Identities=22% Similarity=0.411 Sum_probs=121.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 94 (218)
.|+++|++|||||||++++.+..+...+.++.+.++.. +.... +.+.+||++|+..+..++..+++.+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 38999999999999999999999888888887766543 33333 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCeEEEEccCCCCCHHHHHH
Q 027824 95 VTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFA-----EQESLYFMETSALDATNVENAFT 168 (218)
Q Consensus 95 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~~~ 168 (218)
+++..++.....|+..+.... ..++|+++++||+|+.+.... .+..... ....++++++|++++.|++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 999999988877777765432 267899999999998664322 1221111 12346799999999999999999
Q ss_pred HHHH
Q 027824 169 EVLT 172 (218)
Q Consensus 169 ~i~~ 172 (218)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9865
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=1.2e-25 Score=164.53 Aligned_cols=154 Identities=21% Similarity=0.279 Sum_probs=114.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc-------CCCCCcc------cceeEEEEEEEEE-----CCeEEEEEEEeCCCchhhh
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNE-------FNLESKS------TIGVEFATRSLRI-----DNKVVKAQIWDTAGQERYR 76 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~-------~~~~~~~------t~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~~ 76 (218)
+|+++|++++|||||+++|++.. +...+.+ +.+.++....+.. ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 69999999999999999998742 1111212 2233443333322 5667889999999999999
Q ss_pred hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC---eEE
Q 027824 77 AITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL---YFM 153 (218)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~ 153 (218)
..+..+++.+|++|+|||++++.+++.+..|.... ..++|+++|+||+|+.+.. ......+++...++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 99999999999999999999877766666664332 2468999999999986532 12233455555565 389
Q ss_pred EEccCCCCCHHHHHHHHHHHH
Q 027824 154 ETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 154 ~~Sa~~~~~v~~~~~~i~~~i 174 (218)
++||++|.|++++|++|...+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998754
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=1.9e-25 Score=161.73 Aligned_cols=156 Identities=20% Similarity=0.220 Sum_probs=110.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh---------hhhhhhhc
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR---------AITSAYYR 84 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~ 84 (218)
.+|+++|++|+|||||+++|++..+.....+..+.+...... ....+.+.+|||||..... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 379999999999999999999987643322222222222222 2234789999999973210 01111123
Q ss_pred CCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027824 85 GAVGALLVYDVTRHAT--FQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATN 162 (218)
Q Consensus 85 ~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (218)
.+|++|+|+|++++.+ ++....|+..+.... .+.|+++|+||+|+.....+.. ..++....+.+++++||++|.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence 4689999999998754 456667887776543 4789999999999976544332 4555555678899999999999
Q ss_pred HHHHHHHHHHHH
Q 027824 163 VENAFTEVLTQI 174 (218)
Q Consensus 163 v~~~~~~i~~~i 174 (218)
++++|+++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 130
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=1.4e-25 Score=167.53 Aligned_cols=157 Identities=20% Similarity=0.181 Sum_probs=116.8
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh---------hhhhhh
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER---------YRAITS 80 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~ 80 (218)
.++.++|+++|++|||||||++++++..+.....+..+.+.....+.+.+. ..+.+||+||... +...+
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 355689999999999999999999998754333333334444444444443 3689999999622 22221
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027824 81 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDA 160 (218)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (218)
..+..+|++++|+|++++.++..+..|...+......+.|+++|+||+|+...... ..++...+.+++++||+++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTG 190 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCC
Confidence 23678999999999999988888878887776655567899999999998654322 1344556778999999999
Q ss_pred CCHHHHHHHHHHH
Q 027824 161 TNVENAFTEVLTQ 173 (218)
Q Consensus 161 ~~v~~~~~~i~~~ 173 (218)
.|+++++++|.+.
T Consensus 191 ~gi~~l~~~L~~~ 203 (204)
T cd01878 191 EGLDELLEAIEEL 203 (204)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998765
No 131
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=1.6e-25 Score=162.92 Aligned_cols=154 Identities=21% Similarity=0.338 Sum_probs=118.8
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG 88 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 88 (218)
+....++|+++|++|||||||++++.+..+.. +.++.+.+. ..+..++ ..+.+||++|+..+...+..+++.+|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 44557999999999999999999999876643 446666443 3344444 578999999999988888899999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--------CeEEEEccCC
Q 027824 89 ALLVYDVTRHATFQNVGRWLRELREHT-DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES--------LYFMETSALD 159 (218)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~ 159 (218)
+++|+|+++..++.....|+..+.... ..++|+++++||+|+..... .+ ++....+ .+++++||++
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~---~i~~~l~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AE---EIAEALNLHDLRDRTWHIQACSAKT 159 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HH---HHHHHcCCcccCCCeEEEEEeECCC
Confidence 999999999988888877766664432 25799999999999865332 12 2222222 2478999999
Q ss_pred CCCHHHHHHHHHH
Q 027824 160 ATNVENAFTEVLT 172 (218)
Q Consensus 160 ~~~v~~~~~~i~~ 172 (218)
|+|++++|+||++
T Consensus 160 ~~gi~~~~~~l~~ 172 (173)
T cd04155 160 GEGLQEGMNWVCK 172 (173)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999999975
No 132
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=8.1e-25 Score=156.18 Aligned_cols=156 Identities=35% Similarity=0.518 Sum_probs=128.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
+||+++|.+|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.++.+++++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 79999999999999999999999877777788888877776777776688999999999999999999999999999999
Q ss_pred ECCCh-hhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824 94 DVTRH-ATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170 (218)
Q Consensus 94 d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (218)
|+... .++.... .|...+......+.|+++++||.|+.... ........+......+++++||+++.|++++|++|
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 99877 6666654 67777766554488999999999996644 33333334444456679999999999999999886
No 133
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=6e-25 Score=173.99 Aligned_cols=163 Identities=15% Similarity=0.095 Sum_probs=123.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh----hhhhhh---hhhcC
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER----YRAITS---AYYRG 85 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~---~~~~~ 85 (218)
...|.|+|.|+||||||+++|++........+.++.......+.+.+ ...+.+||+||..+ ...+.. ..++.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 46799999999999999999998664433334445555555555532 24679999999632 122333 34567
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 027824 86 AVGALLVYDVTRHATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNV 163 (218)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 163 (218)
++++|+|+|+++.++++.+..|..++..+.. .++|+++|+||+|+.+...+..+..+.+....+.+++++||++++|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 9999999999988889999999999977653 47899999999999765544444455555666789999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027824 164 ENAFTEVLTQIYK 176 (218)
Q Consensus 164 ~~~~~~i~~~i~~ 176 (218)
++++++|.+.+.+
T Consensus 317 ~eL~~~L~~~l~~ 329 (335)
T PRK12299 317 DELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887754
No 134
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=2.3e-25 Score=161.58 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=112.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCch----hhhhhhhhh---hcCCc
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE----RYRAITSAY---YRGAV 87 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~---~~~~d 87 (218)
+|+++|.+|||||||+++|.+........+..+.+.....+.+.+. ..+.+|||||.. .+..+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999876542222122222222233333332 478999999963 222233333 34699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCeEEEEccCCCCCH
Q 027824 88 GALLVYDVTRH-ATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-ESLYFMETSALDATNV 163 (218)
Q Consensus 88 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v 163 (218)
++++|+|++++ .+++.+..|...+..... .+.|+++|+||+|+....... +....+... .+.+++++||+++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999999 789999999888876542 468999999999996654432 334455555 3788999999999999
Q ss_pred HHHHHHHHHH
Q 027824 164 ENAFTEVLTQ 173 (218)
Q Consensus 164 ~~~~~~i~~~ 173 (218)
+++|++|.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998864
No 135
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=5.2e-24 Score=160.67 Aligned_cols=169 Identities=37% Similarity=0.562 Sum_probs=138.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 92 (218)
.+||+++|+.|||||||+++|.++.+...+.++.+..+...........+.+.+||++|++++..++..++.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 39999999999999999999999999998988888777777666666688999999999999999999999999999999
Q ss_pred EECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHc---CCeEEEEc
Q 027824 93 YDVTRHA-TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV------------AVSTEDGKAFAEQE---SLYFMETS 156 (218)
Q Consensus 93 ~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~S 156 (218)
||..+.. +++....|...+........|+++++||+|+.... .............. ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 9999954 55556789999888775679999999999997653 22233322222222 33489999
Q ss_pred cC--CCCCHHHHHHHHHHHHHHHHhhh
Q 027824 157 AL--DATNVENAFTEVLTQIYKIVSKR 181 (218)
Q Consensus 157 a~--~~~~v~~~~~~i~~~i~~~~~~~ 181 (218)
++ .+.++.++|..+...+.+.....
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIEKL 191 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence 99 99999999999999887654433
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1.7e-24 Score=155.95 Aligned_cols=152 Identities=17% Similarity=0.119 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC---cCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKN---EFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 90 (218)
+.|+++|++++|||||+++|++. .+...+.++.+.+.....+.+.. ...+.+|||||++.+......+++++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 36899999999999999999864 23333334444454444444442 357899999999988777777889999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHH---cCCeEEEEccCCCCC
Q 027824 91 LVYDVTR---HATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA--VSTEDGKAFAEQ---ESLYFMETSALDATN 162 (218)
Q Consensus 91 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~ 162 (218)
+|+|+++ .++.+.+ ..+... ...|+++++||+|+..... ...++..++... .+.+++++||+++.|
T Consensus 80 ~V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 3333322 222221 2248999999999965321 112334444444 467899999999999
Q ss_pred HHHHHHHHHH
Q 027824 163 VENAFTEVLT 172 (218)
Q Consensus 163 v~~~~~~i~~ 172 (218)
++++|+.+..
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=4.7e-25 Score=155.43 Aligned_cols=134 Identities=24% Similarity=0.250 Sum_probs=100.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCch-----hhhhhhhhhhcCCcEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE-----RYRAITSAYYRGAVGA 89 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~ 89 (218)
||+++|++|+|||||+++|.+..+. +.+|.+.++ . -.+||+||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------N-----DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------c-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999987652 334433322 1 1689999972 3344433 57999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHH
Q 027824 90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL-YFMETSALDATNVENAFT 168 (218)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~ 168 (218)
|+|||++++.++.. ..|...+ ..|+++|+||+|+.+. ....++++++++..+. +++++||+++.|++++|.
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999988754 2343322 2489999999998652 3455667788877776 799999999999999998
Q ss_pred HHH
Q 027824 169 EVL 171 (218)
Q Consensus 169 ~i~ 171 (218)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 138
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=1.2e-23 Score=148.89 Aligned_cols=153 Identities=46% Similarity=0.761 Sum_probs=123.4
Q ss_pred EEcCCCCChHHHHHHHhcCcC-CCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECC
Q 027824 18 LIGDSGVGKSNLLSRFTKNEF-NLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT 96 (218)
Q Consensus 18 l~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 96 (218)
++|++|+|||||++++.+... .....++. .+..............+.+||++|...+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999877 44554555 6666777777777889999999999988888888999999999999999
Q ss_pred ChhhHHHHHHHH-HHHHhhcCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027824 97 RHATFQNVGRWL-RELREHTDPNIIVMLIGNKTDLRHLVAVSTED-GKAFAEQESLYFMETSALDATNVENAFTEVL 171 (218)
Q Consensus 97 ~~~s~~~~~~~~-~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (218)
++.++..+..|. .........+.|+++++||+|+.......... ........+.+++++|+.++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999999888873 33333344789999999999997654433322 3444555778999999999999999999875
No 139
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.92 E-value=1.5e-24 Score=147.68 Aligned_cols=165 Identities=25% Similarity=0.517 Sum_probs=145.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 91 (218)
-.+||.++|++..|||||+-++.++.+.+++..+.|+++..+++.+.+..+.+.|||.+|++++..+.+...+.+-+++|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-----ccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824 92 VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV-----AVSTEDGKAFAEQESLYFMETSALDATNVENA 166 (218)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (218)
+||++.++++..+..|++..+.....- .-|+|++|.|+--.. +.-..+++.+++..+++.|+||+..+.++..+
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~NktA-iPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNKTA-IPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI 177 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCCcc-ceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence 999999999999999999998776443 447899999973321 12223467888889999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027824 167 FTEVLTQIYKI 177 (218)
Q Consensus 167 ~~~i~~~i~~~ 177 (218)
|..+.-+++..
T Consensus 178 FK~vlAklFnL 188 (205)
T KOG1673|consen 178 FKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHhCC
Confidence 99888777654
No 140
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=161.91 Aligned_cols=154 Identities=21% Similarity=0.211 Sum_probs=105.3
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCC-----------chhhhhh
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG-----------QERYRAI 78 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~ 78 (218)
....++|+++|.+|+|||||+++|.+..+...+.++ .++....+... .+.+||||| ++.+...
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence 345689999999999999999999988765444444 34433333333 579999999 4666666
Q ss_pred hhhhhc----CCcEEEEEEECCChhhH-HH---------HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 027824 79 TSAYYR----GAVGALLVYDVTRHATF-QN---------VGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAF 144 (218)
Q Consensus 79 ~~~~~~----~~d~~i~v~d~~~~~s~-~~---------~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 144 (218)
+..++. .++++++|+|..+...+ +. -..++..+. ..++|+++|+||+|+.+.. .+...++
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~ 153 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEI 153 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHH
Confidence 666654 45688888887643221 00 011122222 2578999999999996533 2345555
Q ss_pred HHHcCC---------eEEEEccCCCCCHHHHHHHHHHHHHH
Q 027824 145 AEQESL---------YFMETSALDATNVENAFTEVLTQIYK 176 (218)
Q Consensus 145 ~~~~~~---------~~~~~Sa~~~~~v~~~~~~i~~~i~~ 176 (218)
....++ +++++||++| |++++|++|.+.+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 555554 4899999999 999999999887643
No 141
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=1.2e-23 Score=152.27 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=109.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID-NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 93 (218)
.|+++|.+++|||||+++|....+...+.++.+.+.....+... .....+.+|||||+..+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999888766544444444433334333 13567899999999999988888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHH------HcCCeEEEEccCCCCCHHHH
Q 027824 94 DVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVS-TEDGKAFAE------QESLYFMETSALDATNVENA 166 (218)
Q Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~~ 166 (218)
|++++...+... .+..+.. .+.|+++|+||+|+....... .+....+.. ....+++++|++++.|++++
T Consensus 82 d~~~~~~~~~~~-~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 998753222111 1222222 568999999999986432111 111111111 12357999999999999999
Q ss_pred HHHHHHHH
Q 027824 167 FTEVLTQI 174 (218)
Q Consensus 167 ~~~i~~~i 174 (218)
+++|.+..
T Consensus 158 ~~~l~~~~ 165 (168)
T cd01887 158 LEAILLLA 165 (168)
T ss_pred HHHHHHhh
Confidence 99998754
No 142
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.8e-24 Score=151.27 Aligned_cols=159 Identities=18% Similarity=0.322 Sum_probs=129.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 90 (218)
....+|+++|-.++||||++++|..++.... .||.|.++....+ . ++.+.+||.+|++.++.+|..|+++.+++|
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y--k--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY--K--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE--c--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 3468999999999999999999988776544 6898877655544 3 688999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCeEEEEccCCCCCHH
Q 027824 91 LVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-----ESLYFMETSALDATNVE 164 (218)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~ 164 (218)
||+|.+|++.+...++.+..+..... .+.|+++.+||.|++....+ .++.+.... ....+..|+|.+|+|+.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~--~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSA--AEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCH--HHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 99999999999988877777766654 78999999999999875432 233322222 34457889999999999
Q ss_pred HHHHHHHHHHHH
Q 027824 165 NAFTEVLTQIYK 176 (218)
Q Consensus 165 ~~~~~i~~~i~~ 176 (218)
+.++|+...+.+
T Consensus 168 egl~wl~~~~~~ 179 (181)
T KOG0070|consen 168 EGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHhc
Confidence 999999987754
No 143
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=7.9e-24 Score=156.81 Aligned_cols=149 Identities=17% Similarity=0.183 Sum_probs=107.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhc--CcCCCCC------------cccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhh
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTK--NEFNLES------------KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAIT 79 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 79 (218)
.+|+++|++++|||||+++|++ +.+...+ ..+.+.++......+....+.+.+|||||++.|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999997 4443332 1234455555555555566789999999999999999
Q ss_pred hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHH-------HcCCe
Q 027824 80 SAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA-VSTEDGKAFAE-------QESLY 151 (218)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~ 151 (218)
..+++++|++++|||+++.. +.....|+..+.. .++|+++++||+|+..... ...++..++.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2333334444432 4789999999999965332 12334444442 23678
Q ss_pred EEEEccCCCCCHHHH
Q 027824 152 FMETSALDATNVENA 166 (218)
Q Consensus 152 ~~~~Sa~~~~~v~~~ 166 (218)
++++||++|.|+.++
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999887554
No 144
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=1.7e-23 Score=149.91 Aligned_cols=147 Identities=17% Similarity=0.168 Sum_probs=111.4
Q ss_pred EEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhh------hhhhhhc--CCcEE
Q 027824 18 LIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRA------ITSAYYR--GAVGA 89 (218)
Q Consensus 18 l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~d~~ 89 (218)
|+|.+|+|||||++++.+..+.....++.+.+.....+.+++ ..+.+|||||+..+.. ++..++. ++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998875555556556666556666665 4689999999876553 3455564 99999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027824 90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE 169 (218)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 169 (218)
|+|+|+.+++... .|...+.. .++|+++++||+|+.....+.. ....++...+.+++++|+.++.|+++++.+
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999998865432 33333332 4689999999999976554443 345677777899999999999999999999
Q ss_pred HHHH
Q 027824 170 VLTQ 173 (218)
Q Consensus 170 i~~~ 173 (218)
+...
T Consensus 152 l~~~ 155 (158)
T cd01879 152 IAEL 155 (158)
T ss_pred HHHH
Confidence 8775
No 145
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=2.6e-23 Score=164.60 Aligned_cols=160 Identities=16% Similarity=0.131 Sum_probs=118.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh----hhhhhhh---hcC
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY----RAITSAY---YRG 85 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~ 85 (218)
...|+++|.|+||||||+++|++........+.++.......+.+++ ...+.+||+||..+. ..+...+ ++.
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 57899999999999999999998764333333334444455555543 356899999996421 1233333 457
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027824 86 AVGALLVYDVTRH---ATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDA 160 (218)
Q Consensus 86 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (218)
++++|+|+|+++. ++++.+..|..++..+.. .+.|+++|+||+|+..... ..+..+++....+.+++++||+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 9999999999976 678888888888876543 5789999999999976533 233445566667889999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027824 161 TNVENAFTEVLTQI 174 (218)
Q Consensus 161 ~~v~~~~~~i~~~i 174 (218)
+|+++++++|.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998754
No 146
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=2.5e-23 Score=166.01 Aligned_cols=155 Identities=20% Similarity=0.170 Sum_probs=114.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc---------hhhhhhhhh
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ---------ERYRAITSA 81 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~ 81 (218)
+..++|+++|.+++|||||+|+|++........+..+.++....+.+.+. ..+.+|||+|. +.|...+ .
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-E 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence 45689999999999999999999997754333344445666666666432 47899999996 2232222 3
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCC
Q 027824 82 YYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDAT 161 (218)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (218)
.+.++|++++|+|++++.+++.+..|...+......+.|+++|+||+|+..... ...+ .....+++++||+++.
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAktg~ 338 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKTGE 338 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccCCC
Confidence 478999999999999998888877777766665445789999999999965322 1111 1223468999999999
Q ss_pred CHHHHHHHHHHH
Q 027824 162 NVENAFTEVLTQ 173 (218)
Q Consensus 162 ~v~~~~~~i~~~ 173 (218)
|+++++++|.+.
T Consensus 339 GI~eL~~~I~~~ 350 (351)
T TIGR03156 339 GLDLLLEAIAER 350 (351)
T ss_pred CHHHHHHHHHhh
Confidence 999999998753
No 147
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.90 E-value=6.5e-24 Score=143.21 Aligned_cols=154 Identities=21% Similarity=0.400 Sum_probs=126.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 92 (218)
.+.+.++|-.++|||||++.+..+.+.+.-.||.|++.. .++...+.+.+||.+|+..++++|..|.+.+++++||
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 578999999999999999999998888877788886653 3456678999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--------CCeEEEEccCCCCCH
Q 027824 93 YDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE--------SLYFMETSALDATNV 163 (218)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~~v 163 (218)
+|+++++.+..-+..+..+..... .++|++|++||.|+++.. +.. .+..+. .+-+|.+|+++..++
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL--~~~---~li~rmgL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL--SKI---ALIERMGLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc--cHH---HHHHHhCccccccceEEEEEEEEcCCccH
Confidence 999999888777776666655444 789999999999997732 222 223332 345899999999999
Q ss_pred HHHHHHHHHHHH
Q 027824 164 ENAFTEVLTQIY 175 (218)
Q Consensus 164 ~~~~~~i~~~i~ 175 (218)
+-+++||+++-.
T Consensus 171 d~~~~Wli~hsk 182 (186)
T KOG0075|consen 171 DITLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHHHhh
Confidence 999999998653
No 148
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=2.2e-23 Score=146.70 Aligned_cols=148 Identities=18% Similarity=0.233 Sum_probs=107.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCch------hhhhhhhhhh--cC
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE------RYRAITSAYY--RG 85 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~~~~~~~~~~--~~ 85 (218)
++|+++|.|++|||||+|+|++........|..+.+.....+.+.+ ..+.++|+||.- ........++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999987666667777887777777777 467999999932 1223333443 68
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 027824 86 AVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVEN 165 (218)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 165 (218)
.|++++|+|+++.+ +-..+...+.. .++|+++++||+|......+.. ....+.+..+++++.+||++++|+++
T Consensus 79 ~D~ii~VvDa~~l~---r~l~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RNLYLTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHH---HHHHHHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHH---HHHHHHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 99999999998743 22222333333 5799999999999865444432 36677778899999999999999999
Q ss_pred HHHHH
Q 027824 166 AFTEV 170 (218)
Q Consensus 166 ~~~~i 170 (218)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98765
No 149
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=5.3e-23 Score=149.85 Aligned_cols=155 Identities=21% Similarity=0.186 Sum_probs=109.4
Q ss_pred EEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh----hhh---hhhhhcCCcEEE
Q 027824 18 LIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY----RAI---TSAYYRGAVGAL 90 (218)
Q Consensus 18 l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~---~~~~~~~~d~~i 90 (218)
++|++|+|||||+++|.+........+..+.+.....+.+.+ ...+.+||+||.... ..+ ....++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998865222222223333333343441 356799999996321 222 234567899999
Q ss_pred EEEECCCh------hhHHHHHHHHHHHHhhcC-------CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEcc
Q 027824 91 LVYDVTRH------ATFQNVGRWLRELREHTD-------PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 157 (218)
Q Consensus 91 ~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (218)
+|+|+.++ .+++.+..|...+..... .+.|+++|+||+|+..................+..++++||
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999988 578887778777765432 37899999999999765444333233444446778999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027824 158 LDATNVENAFTEVLTQ 173 (218)
Q Consensus 158 ~~~~~v~~~~~~i~~~ 173 (218)
+++.|++++++++...
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999998764
No 150
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=5.9e-23 Score=140.36 Aligned_cols=114 Identities=32% Similarity=0.640 Sum_probs=88.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCC--CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFN--LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 92 (218)
||+|+|++|||||||+++|++..+. ..+.++.+.++.............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 22223444445455666677776799999999999988888889999999999
Q ss_pred EECCChhhHHHHHH---HHHHHHhhcCCCCcEEEEEeCCC
Q 027824 93 YDVTRHATFQNVGR---WLRELREHTDPNIIVMLIGNKTD 129 (218)
Q Consensus 93 ~d~~~~~s~~~~~~---~~~~i~~~~~~~~p~ivv~nK~D 129 (218)
||++++.+++.+.. |+..+.... .++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 99999999988754 555555543 5699999999998
No 151
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=2.1e-22 Score=156.31 Aligned_cols=152 Identities=18% Similarity=0.148 Sum_probs=103.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCc-ccceeEEEEEEEEECCeEEEEEEEeCCCchhhh--------hhhhhhhcC
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEFATRSLRIDNKVVKAQIWDTAGQERYR--------AITSAYYRG 85 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~ 85 (218)
+|+++|.+|+|||||+|+|++......+. +.++... ...+...+ ..++.+|||||..... .....+++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~-i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR-ISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc-EEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999987643222 2222222 22222222 2468999999964321 123356789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 027824 86 AVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL-YFMETSALDATNVE 164 (218)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 164 (218)
+|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+.+... ..+....+....+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999876654 334444433 4689999999999964322 22334444444444 79999999999999
Q ss_pred HHHHHHHHHH
Q 027824 165 NAFTEVLTQI 174 (218)
Q Consensus 165 ~~~~~i~~~i 174 (218)
+++++|.+.+
T Consensus 154 ~L~~~l~~~l 163 (270)
T TIGR00436 154 FLAAFIEVHL 163 (270)
T ss_pred HHHHHHHHhC
Confidence 9999987754
No 152
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=1.9e-22 Score=144.11 Aligned_cols=146 Identities=18% Similarity=0.217 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCC-CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhh--------hhhhhhc
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRA--------ITSAYYR 84 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~ 84 (218)
++|+++|++|+|||||++++++..... ...+..+.+.....+...+ ..+.+||+||...+.. .....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876422 2223333344344444443 5679999999654422 1234667
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027824 85 GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVE 164 (218)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 164 (218)
.+|++++|+|++++.+......|.. ..+.|+++++||+|+...... .....+.+++++||+++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 9999999999998877766544332 357899999999999764433 334456789999999999999
Q ss_pred HHHHHHHHHH
Q 027824 165 NAFTEVLTQI 174 (218)
Q Consensus 165 ~~~~~i~~~i 174 (218)
+++++|...+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987643
No 153
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.90 E-value=4.6e-22 Score=135.21 Aligned_cols=162 Identities=23% Similarity=0.354 Sum_probs=133.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCC--CCcccceeEEEEEEEE-ECCeEEEEEEEeCCCchhh-hhhhhhhhcCCcE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNL--ESKSTIGVEFATRSLR-IDNKVVKAQIWDTAGQERY-RAITSAYYRGAVG 88 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~-~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d~ 88 (218)
.-||+++|..++|||+++..++.+.... ++.+|+. +++...+. ..+..-.+.++||.|...+ ..+-..|+.-+|+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 4799999999999999999987655433 3446653 33344443 3444557899999997776 6777889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027824 89 ALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167 (218)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (218)
+++|||..+++||+.+..+...|..... ..+|+++++||.|+.++++++.+.+..|++...++.+++++.+...+-+.|
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 9999999999999998777777765433 679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027824 168 TEVLTQIY 175 (218)
Q Consensus 168 ~~i~~~i~ 175 (218)
..+...+.
T Consensus 168 ~~l~~rl~ 175 (198)
T KOG3883|consen 168 TYLASRLH 175 (198)
T ss_pred HHHHHhcc
Confidence 99988664
No 154
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.90 E-value=1.6e-22 Score=144.80 Aligned_cols=139 Identities=17% Similarity=0.245 Sum_probs=100.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc-----hhhhhhhhhhhcCCcEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ-----ERYRAITSAYYRGAVGA 89 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~-----~~~~~~~~~~~~~~d~~ 89 (218)
+|+++|.+++|||||++++.+... . ...+.++. +... .+||+||. +.+..+ ...++++|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~~~v~-------~~~~----~~iDtpG~~~~~~~~~~~~-~~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKTQAVE-------FNDK----GDIDTPGEYFSHPRWYHAL-ITTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-c-CccceEEE-------ECCC----CcccCCccccCCHHHHHHH-HHHHhcCCEE
Confidence 799999999999999999876432 1 11222222 2221 26999996 222222 2347899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC--eEEEEccCCCCCHHHHH
Q 027824 90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL--YFMETSALDATNVENAF 167 (218)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~~~ 167 (218)
++|+|++++.++ +..|+..+ ..+.|+++++||+|+.+ ...+...+++.+.++ +++++||++++|++++|
T Consensus 69 l~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 69 IYVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred EEEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence 999999988765 23344433 24678999999999865 334567777777774 89999999999999999
Q ss_pred HHHHHHHHH
Q 027824 168 TEVLTQIYK 176 (218)
Q Consensus 168 ~~i~~~i~~ 176 (218)
+++.+.+.+
T Consensus 140 ~~l~~~~~~ 148 (158)
T PRK15467 140 DYLASLTKQ 148 (158)
T ss_pred HHHHHhchh
Confidence 999876644
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.90 E-value=5.7e-22 Score=162.52 Aligned_cols=155 Identities=20% Similarity=0.245 Sum_probs=117.4
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh--------hh
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI--------TS 80 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~ 80 (218)
....++|+++|++|+|||||+|+|++.... ....+..+.++....+.+++ ..+.+|||||...+... ..
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 345689999999999999999999987542 22335555666666677766 45689999997544322 24
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027824 81 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDA 160 (218)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (218)
.+++++|++++|||++++.+++.. |+..+.. .+.|+|+|+||+|+... ....++...+.+++++|+++
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~- 345 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ- 345 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-
Confidence 577899999999999998877664 6655532 46899999999999643 12345566778899999998
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 027824 161 TNVENAFTEVLTQIYKIV 178 (218)
Q Consensus 161 ~~v~~~~~~i~~~i~~~~ 178 (218)
.|++++|+.+.+.+.+..
T Consensus 346 ~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 346 LKIKALVDLLTQKINAFY 363 (442)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 699999999999887654
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=2.3e-22 Score=167.13 Aligned_cols=161 Identities=20% Similarity=0.185 Sum_probs=114.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCc----------hhhhhhh
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ----------ERYRAIT 79 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~ 79 (218)
+..++|+++|.+++|||||+++|++..+. ....+..+.+.....+..++.. +.+|||+|. +.+..+.
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHH
Confidence 35699999999999999999999988653 3334555555555566666654 579999994 3333332
Q ss_pred -hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHH-HHHHcCCeEEEE
Q 027824 80 -SAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV--STEDGKA-FAEQESLYFMET 155 (218)
Q Consensus 80 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~~~ 155 (218)
..+++.+|++|+|+|++++.++..+. ++..+. ..+.|+|+|+||+|+.+.... ...+..+ +.....++++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~---~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVI---EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 34678999999999999988877753 333333 257899999999999653211 1111221 222234789999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHH
Q 027824 156 SALDATNVENAFTEVLTQIYKI 177 (218)
Q Consensus 156 Sa~~~~~v~~~~~~i~~~i~~~ 177 (218)
||++|.|++++|..+.+.+...
T Consensus 363 SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998866443
No 157
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=4.7e-22 Score=168.36 Aligned_cols=157 Identities=19% Similarity=0.251 Sum_probs=117.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCc-------CCCCCc------ccceeEEEEEEEEE-----CCeEEEEEEEeCCCch
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNE-------FNLESK------STIGVEFATRSLRI-----DNKVVKAQIWDTAGQE 73 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~-------~~~~~~------~t~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~ 73 (218)
+..+|+++|+.++|||||+++|+... +...+. ...|+++....+.+ ++..+.+.+|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 35689999999999999999998752 111121 12244444433322 4566899999999999
Q ss_pred hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC---
Q 027824 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL--- 150 (218)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--- 150 (218)
+|...+..+++.+|++|+|+|++++.+.+....|...+. .+.|+++++||+|+.... ......++....++
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~ 155 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDAS 155 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999877777666655442 467999999999986532 12223455555555
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHH
Q 027824 151 YFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 151 ~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
.++++||++|.|++++|++|.+.+
T Consensus 156 ~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 156 EAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred eEEEeeccCCCCHHHHHHHHHHhC
Confidence 489999999999999999998755
No 158
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=2.3e-22 Score=148.73 Aligned_cols=157 Identities=17% Similarity=0.112 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC----cCCCCC---cccceeEEEEEEEEEC------------CeEEEEEEEeCCCchh
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKN----EFNLES---KSTIGVEFATRSLRID------------NKVVKAQIWDTAGQER 74 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~----~~~~~~---~~t~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~ 74 (218)
++|+++|++++|||||+++|+.. .+...+ .+..+.+.....+.+. +..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 121111 1222333322222222 3357899999999876
Q ss_pred hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHH------
Q 027824 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA--VSTEDGKAFAE------ 146 (218)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~------ 146 (218)
+..........+|++++|+|+.++........|. .. .. .+.|+++++||+|+..... ...++.++...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~-~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IG-EI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HH-HH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5444444567789999999998754433332222 11 11 3579999999999864322 12222322211
Q ss_pred -HcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824 147 -QESLYFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 147 -~~~~~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
..+++++.+||+++.|++++++++..++
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 1357899999999999999999998876
No 159
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.2e-21 Score=158.91 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=118.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh----hhhhhhhh---hcC
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER----YRAITSAY---YRG 85 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~ 85 (218)
...|+++|.|+||||||++++++........+.++.......+.+.. ...+.+||+||..+ ...+...+ ++.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 34899999999999999999998764433334444444444444432 34689999999632 22333334 456
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027824 86 AVGALLVYDVTRH---ATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDA 160 (218)
Q Consensus 86 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (218)
++++|+|+|+++. ++++.+..|..++..+.. .++|++||+||+|+... .+...++....+.+++++||+++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tg 312 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTG 312 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCC
Confidence 9999999999864 677788888888877643 47899999999998432 23455666666678999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 027824 161 TNVENAFTEVLTQIYKIV 178 (218)
Q Consensus 161 ~~v~~~~~~i~~~i~~~~ 178 (218)
.|+++++++|.+.+.+..
T Consensus 313 eGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 313 QGLDELLYAVAELLEETP 330 (424)
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999988776543
No 160
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=3.2e-22 Score=147.30 Aligned_cols=154 Identities=19% Similarity=0.205 Sum_probs=110.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcc----------------cceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKS----------------TIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI 78 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 78 (218)
+|+++|.+|+|||||+++|++......... ..+.......+... ...+.+||+||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 589999999999999999998876543321 11222222223233 467899999999988888
Q ss_pred hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHH---------
Q 027824 79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV--STEDGKAFAEQ--------- 147 (218)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~--------- 147 (218)
+..+++.+|++++|+|+.++..... ..++..+.. .+.|+++++||+|+..+... ..++.++....
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8889999999999999988654432 233333332 57899999999999753221 12233333333
Q ss_pred -----cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824 148 -----ESLYFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 148 -----~~~~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
...+++++||+++.|++++|.++...+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 356799999999999999999998864
No 161
>PRK15494 era GTPase Era; Provisional
Probab=99.89 E-value=5e-22 Score=158.36 Aligned_cols=154 Identities=21% Similarity=0.333 Sum_probs=105.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCc-ccceeEEEEEEEEECCeEEEEEEEeCCCchh-hhhhh-------hh
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEFATRSLRIDNKVVKAQIWDTAGQER-YRAIT-------SA 81 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~-------~~ 81 (218)
...++|+++|.+|||||||+++|++..+..... +..+.+.....+..++ .++.+|||||... +..+. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 455799999999999999999999887653221 2222233333444444 4679999999742 22221 23
Q ss_pred hhcCCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CeEEEEccC
Q 027824 82 YYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES--LYFMETSAL 158 (218)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 158 (218)
.+..+|++++|+|..+ ++.... .|+..+.. .+.|.|+|+||+|+... ...++.+++...+ ..+|++||+
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 4679999999999765 344443 34555543 34677889999998643 2345556655543 579999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027824 159 DATNVENAFTEVLTQI 174 (218)
Q Consensus 159 ~~~~v~~~~~~i~~~i 174 (218)
+|.|++++|++|...+
T Consensus 200 tg~gv~eL~~~L~~~l 215 (339)
T PRK15494 200 SGKNIDGLLEYITSKA 215 (339)
T ss_pred CccCHHHHHHHHHHhC
Confidence 9999999999998755
No 162
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=2.7e-22 Score=143.33 Aligned_cols=146 Identities=20% Similarity=0.134 Sum_probs=100.2
Q ss_pred EEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhh--------hhhhhhcCCc
Q 027824 17 VLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRA--------ITSAYYRGAV 87 (218)
Q Consensus 17 ~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d 87 (218)
+++|.+|+|||||+++|++.... ....+..+.+........++ ..+.+|||||...+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999987522 11223333333334444444 5689999999876443 3345678899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHHHH
Q 027824 88 GALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL-YFMETSALDATNVENA 166 (218)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~ 166 (218)
++++|+|..++.+.... .+...+.. .+.|+++|+||+|+.+.... .......+. .++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999876544332 12222222 35899999999999664322 223334555 7899999999999999
Q ss_pred HHHHHHH
Q 027824 167 FTEVLTQ 173 (218)
Q Consensus 167 ~~~i~~~ 173 (218)
|+++++.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999864
No 163
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=1.5e-21 Score=159.18 Aligned_cols=158 Identities=19% Similarity=0.163 Sum_probs=113.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh--hhhhhh------hhhc
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER--YRAITS------AYYR 84 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~------~~~~ 84 (218)
.++|+++|.+|+|||||+|+|++..+.....+..+.+.....+.+.+. ..+.+|||+|... ...++. ..++
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 468999999999999999999987765444445555555555655543 2578999999732 122222 3368
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCH
Q 027824 85 GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNV 163 (218)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v 163 (218)
.+|++|+|+|++++.+++.+..|...+......+.|+++|+||+|+...... .. . ....+.+ ++.+||++|.|+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~---~~-~-~~~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP---RI-D-RDEENKPIRVWLSAQTGAGI 350 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH---HH-H-HHhcCCCceEEEeCCCCCCH
Confidence 9999999999999988887766666555554467999999999998642111 11 1 1123555 588999999999
Q ss_pred HHHHHHHHHHHHH
Q 027824 164 ENAFTEVLTQIYK 176 (218)
Q Consensus 164 ~~~~~~i~~~i~~ 176 (218)
++++++|...+..
T Consensus 351 deL~e~I~~~l~~ 363 (426)
T PRK11058 351 PLLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999988754
No 164
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=6.6e-22 Score=164.44 Aligned_cols=155 Identities=23% Similarity=0.206 Sum_probs=108.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCC-CCcccceeEEEEEEEEECCeEEEEEEEeCCCchh--------hhhhhhhh
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER--------YRAITSAY 82 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 82 (218)
+..+|+++|.+|||||||+++|++..... ...+..+.+.....+...+ ..+.+|||||.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 45799999999999999999999876432 3334444444444444554 3578999999652 33445667
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027824 83 YRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATN 162 (218)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (218)
++.+|++|+|+|++++.++.. ..|...+.. .++|+++|+||+|+.... .+....+....+ ..+++||++|.|
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~g 186 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRG 186 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCC
Confidence 899999999999998765432 233333432 578999999999986421 112222222223 357999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027824 163 VENAFTEVLTQIYK 176 (218)
Q Consensus 163 v~~~~~~i~~~i~~ 176 (218)
++++|++++..+.+
T Consensus 187 i~eL~~~i~~~l~~ 200 (472)
T PRK03003 187 VGDLLDAVLAALPE 200 (472)
T ss_pred cHHHHHHHHhhccc
Confidence 99999999987744
No 165
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.6e-21 Score=160.24 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=116.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCch----hhhhhh---hhhhcC
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE----RYRAIT---SAYYRG 85 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~---~~~~~~ 85 (218)
...|+|+|.|+||||||+++|++........+.++.......+.+.+ ..+.+||+||.. ....+. ...+..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 57899999999999999999998765443334444555455555554 578999999952 111222 224578
Q ss_pred CcEEEEEEECCC----hhhHHHHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 027824 86 AVGALLVYDVTR----HATFQNVGRWLRELREHT-----------DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL 150 (218)
Q Consensus 86 ~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~-----------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 150 (218)
+|++|+|+|+++ ++.+..+..|..++..+. ..+.|+|||+||+|+.+..... +..+......++
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g~ 315 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARGW 315 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcCC
Confidence 999999999985 345556666666665443 1468999999999996544322 223334445678
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHHHHHh
Q 027824 151 YFMETSALDATNVENAFTEVLTQIYKIVS 179 (218)
Q Consensus 151 ~~~~~Sa~~~~~v~~~~~~i~~~i~~~~~ 179 (218)
++|++||++++|+++++.+|.+.+...+.
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999998877554
No 166
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.8e-21 Score=130.45 Aligned_cols=155 Identities=20% Similarity=0.425 Sum_probs=124.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 92 (218)
.++|+++|-.++||||++.+|.-+.. ....||.|+++...+. +++.+.+||.+|++..+.+|+.|+.+..++|||
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 58999999999999999999987665 3445887766544333 567899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEEccCCCCCHHHH
Q 027824 93 YDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-----QESLYFMETSALDATNVENA 166 (218)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~ 166 (218)
+|..+++.++..+..+..+..... .+.|++|.+||.|++....+ .++..+.. .....+..+++.++.|+.+-
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~p--qei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKP--QEIQDKLELERIRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCH--HHHHHHhccccccCCccEeeccccccchhHHHH
Confidence 999999888888776666655444 78899999999999875433 34444332 23445788999999999999
Q ss_pred HHHHHHHH
Q 027824 167 FTEVLTQI 174 (218)
Q Consensus 167 ~~~i~~~i 174 (218)
|.|+.+.+
T Consensus 170 lswlsnn~ 177 (180)
T KOG0071|consen 170 LSWLSNNL 177 (180)
T ss_pred HHHHHhhc
Confidence 99998754
No 167
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.88 E-value=8.3e-22 Score=162.38 Aligned_cols=149 Identities=19% Similarity=0.205 Sum_probs=111.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh--------hhhh
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI--------TSAY 82 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 82 (218)
..++|+++|.+++|||||+|+|++.... ....+..+.++....+.+++ ..+.+|||+|..++... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3489999999999999999999987642 23334445555555666655 46799999997654322 2346
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCC
Q 027824 83 YRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATN 162 (218)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (218)
++++|++++|||++++.+++....|.. ..+.|+++|+||+|+....... ...+.+++++||++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 789999999999999887776544433 3578999999999996533221 33466899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027824 163 VENAFTEVLTQIYK 176 (218)
Q Consensus 163 v~~~~~~i~~~i~~ 176 (218)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887643
No 168
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=2.3e-21 Score=163.50 Aligned_cols=154 Identities=16% Similarity=0.185 Sum_probs=112.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 90 (218)
.+..+|+++|++++|||||+++|.+..+.....+..+.+.....+..++.. .+.+|||||++.|..++...+..+|++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 356899999999999999999999887765554544455444445444322 6899999999999999988899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC---------CeEEEEccCCCC
Q 027824 91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES---------LYFMETSALDAT 161 (218)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~ 161 (218)
+|+|++++...+....| ..+ ...++|+++++||+|+.+. +.++..+.+...+ .+++++||++|.
T Consensus 164 LVVda~dgv~~qT~e~i-~~~---~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 164 LVVAADDGVMPQTIEAI-SHA---KAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEECCCCCCHhHHHHH-HHH---HHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 99999875322222222 222 2257899999999998652 2333444433322 479999999999
Q ss_pred CHHHHHHHHHH
Q 027824 162 NVENAFTEVLT 172 (218)
Q Consensus 162 ~v~~~~~~i~~ 172 (218)
|++++|+++..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999999874
No 169
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=1.5e-21 Score=161.26 Aligned_cols=160 Identities=23% Similarity=0.178 Sum_probs=108.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCC-CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhh----------h-
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRA----------I- 78 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~- 78 (218)
+..++|+++|.+++|||||+++|++..... ...+..+.+.....+..++. .+.+|||||...+.. .
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 456899999999999999999999876432 22233333333344444443 679999999643221 1
Q ss_pred hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-H----cCCeEE
Q 027824 79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-Q----ESLYFM 153 (218)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~----~~~~~~ 153 (218)
...+++.+|++|+|+|++++.+..... ++..+. ..+.|+++|+||+|+.+.. ...++...... . .+++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~---~~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLIL---EAGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHH---HcCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceE
Confidence 124678999999999999887766543 223332 2578999999999997221 11122222222 2 257899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHH
Q 027824 154 ETSALDATNVENAFTEVLTQIYKI 177 (218)
Q Consensus 154 ~~Sa~~~~~v~~~~~~i~~~i~~~ 177 (218)
++||++|.|++++|+++...+...
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999998866543
No 170
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=3.6e-21 Score=142.76 Aligned_cols=160 Identities=17% Similarity=0.179 Sum_probs=107.8
Q ss_pred CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc----------hhhhh
Q 027824 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ----------ERYRA 77 (218)
Q Consensus 8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~ 77 (218)
.+.+..++|+++|++|+|||||+++|++..+...+.++.+.+........ ...+.|||+||. +.+..
T Consensus 19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~ 95 (196)
T PRK00454 19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQK 95 (196)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence 34557799999999999999999999987654444455554443333322 257899999994 34444
Q ss_pred hhhhhhcCC---cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcCCeE
Q 027824 78 ITSAYYRGA---VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV--STEDGKAFAEQESLYF 152 (218)
Q Consensus 78 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 152 (218)
+...+++.+ +++++++|.+++.+.... .+...+. ..+.|+++++||+|+....+. ..+++.+.......++
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~ 171 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV 171 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce
Confidence 555555544 678888998876443321 1112222 246889999999998653322 1222444444446789
Q ss_pred EEEccCCCCCHHHHHHHHHHHH
Q 027824 153 METSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 153 ~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
+++||+++.|++++++.|...+
T Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 172 ILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999987655
No 171
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.88 E-value=1.7e-21 Score=142.51 Aligned_cols=150 Identities=20% Similarity=0.240 Sum_probs=101.2
Q ss_pred CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc----------hhhhh
Q 027824 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ----------ERYRA 77 (218)
Q Consensus 8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~ 77 (218)
.+.+..++|+++|++|+|||||++++++..+...+.++.+.+........++ .+.+||+||. ..+..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence 3557789999999999999999999998764333334544444333333332 5899999994 23444
Q ss_pred hhhhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc--ccCHHHHHHHHHHcC--C
Q 027824 78 ITSAYYR---GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV--AVSTEDGKAFAEQES--L 150 (218)
Q Consensus 78 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~--~ 150 (218)
+...+++ .++++++|+|++++.+.... .++..+.. .+.|+++++||+|+..+. +...+++++.....+ .
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 4445554 35799999999886554443 22333332 468999999999986532 222344455555543 5
Q ss_pred eEEEEccCCCCCHH
Q 027824 151 YFMETSALDATNVE 164 (218)
Q Consensus 151 ~~~~~Sa~~~~~v~ 164 (218)
.+|++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 79999999999974
No 172
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=5e-21 Score=162.04 Aligned_cols=154 Identities=18% Similarity=0.171 Sum_probs=116.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC---cCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKN---EFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 90 (218)
+.|+++|++++|||||+++|++. .+..++.++.+.+.....+..++ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999863 34444556666666665666655 67899999999999988888899999999
Q ss_pred EEEECCCh---hhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc--CHHHHHHHHHHc----CCeEEEEccCCC
Q 027824 91 LVYDVTRH---ATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAV--STEDGKAFAEQE----SLYFMETSALDA 160 (218)
Q Consensus 91 ~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~ 160 (218)
+|+|++++ .+.+.+ ..+.. .++| +|+++||+|+.+...+ ..++++++.... +++++++||++|
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 99999984 444332 22322 3567 9999999999764332 223455555543 578999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 027824 161 TNVENAFTEVLTQIYK 176 (218)
Q Consensus 161 ~~v~~~~~~i~~~i~~ 176 (218)
.|+++++..+...+..
T Consensus 152 ~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 152 QGIGELKKELKNLLES 167 (581)
T ss_pred CCchhHHHHHHHHHHh
Confidence 9999999988765543
No 173
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=6.1e-22 Score=139.37 Aligned_cols=163 Identities=32% Similarity=0.543 Sum_probs=142.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 90 (218)
-..++++++|..|.|||+++.+++.+.|...+.+|.|.........-+...+++..||+.|++.+..+...++=+..+.|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 45799999999999999999999999999999999999998877766666799999999999999999999988999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824 91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 170 (218)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (218)
++||++.+.+..++..|.+.+.... .++|+++++||.|..... .......+.+..++.|+++|++.+-|++.-|-|+
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHH
Confidence 9999999999999999999998877 559999999999986533 1223445566678999999999999999999999
Q ss_pred HHHHHH
Q 027824 171 LTQIYK 176 (218)
Q Consensus 171 ~~~i~~ 176 (218)
...+..
T Consensus 165 arKl~G 170 (216)
T KOG0096|consen 165 ARKLTG 170 (216)
T ss_pred hhhhcC
Confidence 887643
No 174
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.87 E-value=6.3e-21 Score=163.17 Aligned_cols=156 Identities=19% Similarity=0.190 Sum_probs=112.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeE--EEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVE--FATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG 88 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 88 (218)
.+..+|+++|++++|||||+++|....+.....+..+.+ .+...+..++....+.+|||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 456799999999999999999998877655443333322 223333344455789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-------HHcC--CeEEEEccCC
Q 027824 89 ALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFA-------EQES--LYFMETSALD 159 (218)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-------~~~~--~~~~~~Sa~~ 159 (218)
+|+|+|++++...+....| ..+ ...++|+|+++||+|+.... .++..+.. ..++ ++++++||++
T Consensus 322 aILVVDA~dGv~~QT~E~I-~~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI-NYI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEECcCCCChhhHHHH-HHH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 9999999885333332222 222 22578999999999996532 22222222 2223 6899999999
Q ss_pred CCCHHHHHHHHHHH
Q 027824 160 ATNVENAFTEVLTQ 173 (218)
Q Consensus 160 ~~~v~~~~~~i~~~ 173 (218)
|.|++++|++|...
T Consensus 395 G~GIdeLle~I~~l 408 (742)
T CHL00189 395 GTNIDKLLETILLL 408 (742)
T ss_pred CCCHHHHHHhhhhh
Confidence 99999999998775
No 175
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=6.1e-21 Score=138.40 Aligned_cols=154 Identities=23% Similarity=0.208 Sum_probs=102.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCC-CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh----------hhh-hh
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY----------RAI-TS 80 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~-~~ 80 (218)
.++|+++|.+|+|||||++++++..... ...+..+.......+..++. .+.+||+||.... ... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 4799999999999999999999876432 22233323333334444443 4689999996422 111 12
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-HHc----CCeEEEE
Q 027824 81 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFA-EQE----SLYFMET 155 (218)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~----~~~~~~~ 155 (218)
..++.+|++++|+|+.++.+..... ++..+.. .+.|+++++||+|+........+...+.. ... +.+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 3567899999999999887655432 2233222 46899999999999765322222222222 222 3689999
Q ss_pred ccCCCCCHHHHHHHHHH
Q 027824 156 SALDATNVENAFTEVLT 172 (218)
Q Consensus 156 Sa~~~~~v~~~~~~i~~ 172 (218)
||+++.|++++++++.+
T Consensus 156 Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 156 SALTGQGVDKLFDAIDE 172 (174)
T ss_pred eccCCCCHHHHHHHHHH
Confidence 99999999999998865
No 176
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=1.5e-20 Score=151.71 Aligned_cols=162 Identities=18% Similarity=0.103 Sum_probs=115.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh-------hhhhhhhhcC
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY-------RAITSAYYRG 85 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~ 85 (218)
...|+++|.|+||||||+|+|++........+.++.......+...+ ...+.++|+||...- .......++.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 34899999999999999999998765434434444444444454442 235899999996421 1111235788
Q ss_pred CcEEEEEEECC---ChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CeEEEEccC
Q 027824 86 AVGALLVYDVT---RHATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES--LYFMETSAL 158 (218)
Q Consensus 86 ~d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 158 (218)
+|++++|+|++ +...++.+..|+.++..+.. .+.|+++|+||+|+....++ .+..+++....+ .+++.+||+
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence 99999999998 45677777888888876543 46899999999998654333 233444544444 478999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027824 159 DATNVENAFTEVLTQIYK 176 (218)
Q Consensus 159 ~~~~v~~~~~~i~~~i~~ 176 (218)
++.+++++++.|.+.+.+
T Consensus 317 tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CCcCHHHHHHHHHHHhhh
Confidence 999999999999887654
No 177
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.87 E-value=7e-21 Score=141.86 Aligned_cols=159 Identities=20% Similarity=0.172 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCC---CCCcccceeEEEEEEEEEC---------------------------C----
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFN---LESKSTIGVEFATRSLRID---------------------------N---- 59 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~---------------------------~---- 59 (218)
++|+++|+.|+|||||+..+.+.... .+.....++.......... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 47999999999999999999654211 1111111111111110000 1
Q ss_pred eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--C
Q 027824 60 KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV--S 137 (218)
Q Consensus 60 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~ 137 (218)
....+.+||+||++.+...+...+..+|++++|+|++++.........+..+... ...|+++++||+|+...... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1157899999999988887778888999999999998741111111112222221 23579999999999653221 1
Q ss_pred HHHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824 138 TEDGKAFAEQ---ESLYFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 138 ~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
.++.+++... .+.+++++||++++|++++|++|.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 2333444443 267899999999999999999987644
No 178
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.87 E-value=1.2e-20 Score=135.74 Aligned_cols=156 Identities=19% Similarity=0.125 Sum_probs=102.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhh--------hhhhhhc
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRA--------ITSAYYR 84 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~ 84 (218)
..+|+++|++|+|||||++++++............... ..........+.+.+||+||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRN-RIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceec-eEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998765332221111111 11112233346789999999653322 2344578
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCeEEEEccCCCCCH
Q 027824 85 GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE-SLYFMETSALDATNV 163 (218)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v 163 (218)
.+|++++|+|++++.+. ....+...+.. .+.|+++++||+|+........+....+.... ..+++++|++++.++
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 89999999999987211 11222333332 36899999999999743332233344444444 368999999999999
Q ss_pred HHHHHHHHHH
Q 027824 164 ENAFTEVLTQ 173 (218)
Q Consensus 164 ~~~~~~i~~~ 173 (218)
+++++.|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 179
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.86 E-value=2.5e-20 Score=160.87 Aligned_cols=155 Identities=17% Similarity=0.171 Sum_probs=111.5
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 89 (218)
..+...|+++|+.++|||||+++|.+..+........+.+.....+..++ ..+.||||||+..|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 45678999999999999999999988776544434443444334444443 5689999999999999998889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH-------HHHcC--CeEEEEccCCC
Q 027824 90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAF-------AEQES--LYFMETSALDA 160 (218)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~~~ 160 (218)
|+|||++++..-+....| ......++|+||++||+|+.+.. .+..... ...++ ++++++||++|
T Consensus 365 ILVVdAddGv~~qT~e~i----~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI----NHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEEEECCCCCCHhHHHHH----HHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 999999885322222222 22223578999999999996521 1222211 22233 68999999999
Q ss_pred CCHHHHHHHHHHH
Q 027824 161 TNVENAFTEVLTQ 173 (218)
Q Consensus 161 ~~v~~~~~~i~~~ 173 (218)
.|++++|++|...
T Consensus 438 ~GI~eLle~I~~~ 450 (787)
T PRK05306 438 EGIDELLEAILLQ 450 (787)
T ss_pred CCchHHHHhhhhh
Confidence 9999999998763
No 180
>PRK00089 era GTPase Era; Reviewed
Probab=99.86 E-value=3.3e-20 Score=145.81 Aligned_cols=157 Identities=18% Similarity=0.165 Sum_probs=103.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh--------hhhhhhhc
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR--------AITSAYYR 84 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~ 84 (218)
.-.|+++|.+|||||||+|+|++...........++......+... ...++.+|||||..... ......+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 3569999999999999999999987644332222122212222222 23688999999964321 22334678
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCCH
Q 027824 85 GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES-LYFMETSALDATNV 163 (218)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 163 (218)
.+|++++|+|++++.+- .....+..+. ..+.|+++|+||+|+.............+....+ ..++.+||+++.|+
T Consensus 84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 84 DVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred cCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 99999999999883221 1112222222 2468999999999997433333334455555444 57999999999999
Q ss_pred HHHHHHHHHHH
Q 027824 164 ENAFTEVLTQI 174 (218)
Q Consensus 164 ~~~~~~i~~~i 174 (218)
+++++++...+
T Consensus 160 ~~L~~~L~~~l 170 (292)
T PRK00089 160 DELLDVIAKYL 170 (292)
T ss_pred HHHHHHHHHhC
Confidence 99999998765
No 181
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.86 E-value=5e-20 Score=137.13 Aligned_cols=117 Identities=23% Similarity=0.365 Sum_probs=88.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC-cEEEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA-VGALLVY 93 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~v~ 93 (218)
+|+++|+++||||+|+++|....+...+. +.............+....+.+||+||+..++..+..+++.+ +++|||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~-s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVT-SIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccC-cEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 68999999999999999999987655442 222222221221123456789999999999998888899998 9999999
Q ss_pred ECCCh-hhHHHHHHHHHHHHhh---cCCCCcEEEEEeCCCCCC
Q 027824 94 DVTRH-ATFQNVGRWLRELREH---TDPNIIVMLIGNKTDLRH 132 (218)
Q Consensus 94 d~~~~-~s~~~~~~~~~~i~~~---~~~~~p~ivv~nK~Dl~~ 132 (218)
|+.+. .++..+..|+..+... ...++|+++++||.|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99987 6777776666554322 226899999999999864
No 182
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.86 E-value=2.2e-23 Score=146.16 Aligned_cols=169 Identities=36% Similarity=0.644 Sum_probs=144.2
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCe-EEEEEEEeCCCchhhhhhhhhhhcCCc
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK-VVKAQIWDTAGQERYRAITSAYYRGAV 87 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d 87 (218)
.+++.++++|+|.-|+|||+++.+++...|+..|..+++.++..+...-+.. .+++++||+.|++.+..+..-+++.+.
T Consensus 21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~ 100 (229)
T KOG4423|consen 21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH 100 (229)
T ss_pred hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence 3688999999999999999999999999999999999999987776655544 478899999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHHcCCe-EEEEccCCCC
Q 027824 88 GALLVYDVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKTDLRHLVA-VSTEDGKAFAEQESLY-FMETSALDAT 161 (218)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 161 (218)
+.++|||++...+|+.+..|.+.+..... ...|+++..||+|+..... .......++.+++|+. ++++|++.+.
T Consensus 101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk 180 (229)
T KOG4423|consen 101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK 180 (229)
T ss_pred ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence 99999999999999999999999865432 4567889999999865322 2245677788888874 9999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027824 162 NVENAFTEVLTQIYKI 177 (218)
Q Consensus 162 ~v~~~~~~i~~~i~~~ 177 (218)
++++.-..+++.++-.
T Consensus 181 ni~Ea~r~lVe~~lvn 196 (229)
T KOG4423|consen 181 NIPEAQRELVEKILVN 196 (229)
T ss_pred ChhHHHHHHHHHHHhh
Confidence 9999999998877653
No 183
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=2.6e-20 Score=157.98 Aligned_cols=159 Identities=18% Similarity=0.247 Sum_probs=114.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCc--CCC-----CC------cccceeEEEEEEEEE-----CCeEEEEEEEeCCCc
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNE--FNL-----ES------KSTIGVEFATRSLRI-----DNKVVKAQIWDTAGQ 72 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~--~~~-----~~------~~t~~~~~~~~~~~~-----~~~~~~~~i~D~~G~ 72 (218)
++..+|+++|+.++|||||+.+|+... +.. .. ..+.++++....+.+ ++..+.+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 456799999999999999999998632 110 00 012233333222222 455789999999999
Q ss_pred hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-
Q 027824 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY- 151 (218)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 151 (218)
.+|...+..+++.+|++|+|+|++++...+....|..... .+.|+++|+||+|+..... .....++....++.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~ 158 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDA 158 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCc
Confidence 9999999999999999999999998766666555544332 4689999999999865321 12233444445553
Q ss_pred --EEEEccCCCCCHHHHHHHHHHHHH
Q 027824 152 --FMETSALDATNVENAFTEVLTQIY 175 (218)
Q Consensus 152 --~~~~Sa~~~~~v~~~~~~i~~~i~ 175 (218)
++.+||++|.|+++++++|.+.+.
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 899999999999999999987653
No 184
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=2e-20 Score=158.55 Aligned_cols=146 Identities=19% Similarity=0.184 Sum_probs=110.0
Q ss_pred cCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh------hhhhh--cCCcEEEE
Q 027824 20 GDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI------TSAYY--RGAVGALL 91 (218)
Q Consensus 20 G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~ 91 (218)
|++|+|||||+|++++......+.+..+.+.....+..++. .+.+||+||+.++... ...++ +.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999998765555566666666666666554 5799999998766443 33333 47899999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 027824 92 VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL 171 (218)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (218)
|+|.++.+. ...+...+. ..+.|+++++||+|+.+...+. .+.+++.+..+++++++||++|+|++++++++.
T Consensus 79 VvDat~ler---~l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchh---hHHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999987432 222223332 3578999999999997655544 346778888999999999999999999999998
Q ss_pred HHH
Q 027824 172 TQI 174 (218)
Q Consensus 172 ~~i 174 (218)
+.+
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 753
No 185
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=4.2e-20 Score=152.81 Aligned_cols=146 Identities=22% Similarity=0.188 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh--------hhhhhhhhhc
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER--------YRAITSAYYR 84 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 84 (218)
++|+++|.+|+|||||+++|.+.... ....+..+.+.....+..++ ..+.+|||||... +......+++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 12224444455555555555 6789999999875 2333456778
Q ss_pred CCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCC
Q 027824 85 GAVGALLVYDVTRHATFQ--NVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY-FMETSALDAT 161 (218)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 161 (218)
.+|++|+|+|+.++.+.. .+..|+.. .+.|+++|+||+|+... .....++ ...++. ++++||++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998864432 23334432 36899999999997441 1222333 345664 8999999999
Q ss_pred CHHHHHHHHHH
Q 027824 162 NVENAFTEVLT 172 (218)
Q Consensus 162 ~v~~~~~~i~~ 172 (218)
|++++|+.+..
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999999887
No 186
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=2.5e-20 Score=153.94 Aligned_cols=150 Identities=19% Similarity=0.179 Sum_probs=105.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCC-CCcccceeEEEEEEEEECCeEEEEEEEeCCCc--------hhhhhhhhhhhcC
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ--------ERYRAITSAYYRG 85 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~ 85 (218)
+|+++|.+|+|||||+|+|++..... ...+..+.+.....+...+ ..+.+|||||. ..+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999876422 2223333444444444444 45899999995 3444556667899
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 027824 86 AVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL-YFMETSALDATNVE 164 (218)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 164 (218)
+|++++|+|+.++.+.... .+...+.. .+.|+++|+||+|+...... ..+ ....++ +++++||.+|.|++
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence 9999999999876443321 12222222 46899999999998653321 222 334566 69999999999999
Q ss_pred HHHHHHHHHHH
Q 027824 165 NAFTEVLTQIY 175 (218)
Q Consensus 165 ~~~~~i~~~i~ 175 (218)
++++.+...+.
T Consensus 150 ~ll~~i~~~l~ 160 (429)
T TIGR03594 150 DLLDAILELLP 160 (429)
T ss_pred HHHHHHHHhcC
Confidence 99999887663
No 187
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.85 E-value=8.7e-21 Score=139.81 Aligned_cols=159 Identities=21% Similarity=0.253 Sum_probs=106.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCC------------------cccceeEEEEEEEEECCeEEEEEEEeCCCch
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLES------------------KSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 73 (218)
..++|+++|+.++|||||+.+|+........ ....+................+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3589999999999999999999865422110 0111222222222212444678999999999
Q ss_pred hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-cCHHHHH-HHHHHc---
Q 027824 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA-VSTEDGK-AFAEQE--- 148 (218)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~-~~~~~~--- 148 (218)
.|.......+..+|++|+|+|+.++..... ...+..+.. .++|+++++||+|+...+. ...++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeeccccccccc-ccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 998888888999999999999997644333 222333333 5688999999999972111 0111122 333332
Q ss_pred ---CCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824 149 ---SLYFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 149 ---~~~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
.++++.+||.+|.|++++++.|.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 35799999999999999999988754
No 188
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=4e-20 Score=131.93 Aligned_cols=151 Identities=19% Similarity=0.163 Sum_probs=103.8
Q ss_pred EEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh-------hhhhhhhcCCcEE
Q 027824 18 LIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR-------AITSAYYRGAVGA 89 (218)
Q Consensus 18 l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~~ 89 (218)
++|++|+|||||++++++.... ....+..+............ ...+.+||+||...+. .....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987654 22223322333333333321 4578999999976543 2344577899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHH---HHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824 90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTE---DGKAFAEQESLYFMETSALDATNVENA 166 (218)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (218)
++|+|..+........ |..... ..+.|+++++||+|+..+...... .........+.+++++|++++.|++++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999876665543 333332 267899999999998764433222 112233335788999999999999999
Q ss_pred HHHHHHH
Q 027824 167 FTEVLTQ 173 (218)
Q Consensus 167 ~~~i~~~ 173 (218)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998764
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=5.7e-20 Score=152.04 Aligned_cols=159 Identities=25% Similarity=0.225 Sum_probs=106.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh----------hhhh-
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER----------YRAI- 78 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~- 78 (218)
+..++|+++|.+++|||||+++|++.... ....+..+.+.....+..++ ..+.+|||||... +...
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 35799999999999999999999986532 22233333333333343444 4568999999532 2111
Q ss_pred hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH----cCCeEEE
Q 027824 79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ----ESLYFME 154 (218)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~ 154 (218)
...+++.+|++|+|+|++++.+..... ++..+.. .+.|+++++||+|+.+.... .+...++... ..+++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEE
Confidence 123678999999999999887665542 2233322 46899999999998643211 1111122221 3578999
Q ss_pred EccCCCCCHHHHHHHHHHHHHH
Q 027824 155 TSALDATNVENAFTEVLTQIYK 176 (218)
Q Consensus 155 ~Sa~~~~~v~~~~~~i~~~i~~ 176 (218)
+||+++.|++++|+.+.+.+..
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998876544
No 190
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.1e-20 Score=128.99 Aligned_cols=160 Identities=21% Similarity=0.348 Sum_probs=121.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCc---CC----CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhc
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNE---FN----LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYR 84 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~---~~----~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 84 (218)
..+.|+++|..++|||||+.++.... +. ..-.+|.|.+.....+ . ...+.+||.+|++..+++|..|+.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v--~--~~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV--C--NAPLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee--c--cceeEEEEcCChHHHHHHHHHHHH
Confidence 35789999999999999998764321 11 1222555555444433 3 346899999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHH---HH---cCCeEEEEcc
Q 027824 85 GAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFA---EQ---ESLYFMETSA 157 (218)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~~---~~~~~~~~Sa 157 (218)
.++++|+++|+++++-|+....-++.+..... .++|+++.+||.|+.+...+. +.+... .. ...++..+||
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~--El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAA--ELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHH--HHHHHhhhhhhcCCccCccccchh
Confidence 99999999999999998887665555544333 899999999999997744332 332222 22 3567999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 027824 158 LDATNVENAFTEVLTQIYKI 177 (218)
Q Consensus 158 ~~~~~v~~~~~~i~~~i~~~ 177 (218)
.+|+||++...|++..+.++
T Consensus 170 l~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 170 LTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhcccHHHHHHHHHHHHhhc
Confidence 99999999999999988776
No 191
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.83 E-value=3.5e-19 Score=154.41 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=113.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh----------hhhh
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI----------TSAY 82 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~~ 82 (218)
.++|+++|++|||||||+|++++........ .|.++..+...+......+.+||+||..++... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 4789999999999999999999876543333 445555555555555677899999997655321 2223
Q ss_pred h--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027824 83 Y--RGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDA 160 (218)
Q Consensus 83 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (218)
+ ..+|++++|+|.++.+.. ..|...+.+ .+.|+++++||+|+.+.+.+. ...+++.+..+++++.+|+.++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeecC
Confidence 2 479999999999886432 223344433 478999999999987655443 4567788889999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027824 161 TNVENAFTEVLTQI 174 (218)
Q Consensus 161 ~~v~~~~~~i~~~i 174 (218)
+|++++++.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999998887643
No 192
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=2.1e-19 Score=136.22 Aligned_cols=158 Identities=18% Similarity=0.138 Sum_probs=107.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh--------hhhhhhhh
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY--------RAITSAYY 83 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~ 83 (218)
..--|+++|.|++|||||+|++++......+....++......+.-. ...++.++||||...- .......+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 34679999999999999999999998876665444333333444333 3678999999994322 12233457
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEEccCCCCC
Q 027824 84 RGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES-LYFMETSALDATN 162 (218)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 162 (218)
..+|+++||+|+++...-.. ...+..+.. .+.|+++++||+|...+..........+..... ..++.+||+++.+
T Consensus 84 ~dvDlilfvvd~~~~~~~~d-~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n 159 (298)
T COG1159 84 KDVDLILFVVDADEGWGPGD-EFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN 159 (298)
T ss_pred ccCcEEEEEEeccccCCccH-HHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence 89999999999987432211 122333332 467999999999987755422222233333333 3699999999999
Q ss_pred HHHHHHHHHHHH
Q 027824 163 VENAFTEVLTQI 174 (218)
Q Consensus 163 v~~~~~~i~~~i 174 (218)
++.+.+.+...+
T Consensus 160 ~~~L~~~i~~~L 171 (298)
T COG1159 160 VDTLLEIIKEYL 171 (298)
T ss_pred HHHHHHHHHHhC
Confidence 999998887765
No 193
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=3.9e-19 Score=154.34 Aligned_cols=157 Identities=19% Similarity=0.187 Sum_probs=109.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCch----------hhhhhh-
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE----------RYRAIT- 79 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~- 79 (218)
..++|+++|.+++|||||+++|++.... ....+..+.+.....+.+++.. +.+|||+|.. .+..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999998743 2233444455545555566654 5699999942 222222
Q ss_pred hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH-HHHH----cCCeEEE
Q 027824 80 SAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKA-FAEQ----ESLYFME 154 (218)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~ 154 (218)
..+++.+|++++|+|++++.+.+.+..| ..+.. .+.|+++|+||+|+.+... .+.... +... ..++++.
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i~-~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKVM-SMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 2457899999999999998777765433 33322 5789999999999965322 111221 2111 2356799
Q ss_pred EccCCCCCHHHHHHHHHHHHHH
Q 027824 155 TSALDATNVENAFTEVLTQIYK 176 (218)
Q Consensus 155 ~Sa~~~~~v~~~~~~i~~~i~~ 176 (218)
+||++|.|++++|+.+.+.+..
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
No 194
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.83 E-value=1.1e-19 Score=122.02 Aligned_cols=156 Identities=24% Similarity=0.355 Sum_probs=121.3
Q ss_pred CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCc
Q 027824 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAV 87 (218)
Q Consensus 8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 87 (218)
.+....+||+++|-.++|||||+..|...... .-.||.|++ .+.+.+++ .+.+.+||.+|+...+..|..|+.+.|
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn--~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd 87 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFN--TKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVD 87 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcc--eEEEeecC-cEEEEEEecCCccccchhhhhhhhccc
Confidence 34577899999999999999999999776543 333777755 45555554 478999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--------CCeEEEEccC
Q 027824 88 GALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE--------SLYFMETSAL 158 (218)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~ 158 (218)
++|||+|.+|..-|+++...+-++....+ ...|+.+..||.|+..... +.+.+.+. -..+.+||+.
T Consensus 88 ~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~-----~eeia~klnl~~lrdRswhIq~csal 162 (185)
T KOG0074|consen 88 GLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK-----VEEIALKLNLAGLRDRSWHIQECSAL 162 (185)
T ss_pred eEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc-----hHHHHHhcchhhhhhceEEeeeCccc
Confidence 99999999998888888666666654443 7899999999999854322 23333332 2357899999
Q ss_pred CCCCHHHHHHHHHH
Q 027824 159 DATNVENAFTEVLT 172 (218)
Q Consensus 159 ~~~~v~~~~~~i~~ 172 (218)
+++|+.+-.+|+..
T Consensus 163 s~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 163 SLEGSTDGSDWVQS 176 (185)
T ss_pred cccCccCcchhhhc
Confidence 99999988888765
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=3.1e-19 Score=154.95 Aligned_cols=156 Identities=23% Similarity=0.179 Sum_probs=104.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh--------hhhhhhhh
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER--------YRAITSAY 82 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 82 (218)
....+|+++|.+++|||||+|+|++....... .+.|++..............+.+|||||.+. +......+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 34578999999999999999999987643222 2333333333322222235689999999652 33444567
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCCC
Q 027824 83 YRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL-YFMETSALDAT 161 (218)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 161 (218)
++.+|++|+|+|++++..... ..|...+.. .+.|+|+|+||+|+.... ....++.. .+. ..+++||++|.
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~~-lg~~~~~~iSA~~g~ 422 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFWK-LGLGEPYPISAMHGR 422 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHHH-cCCCCeEEEECCCCC
Confidence 889999999999987432211 234444432 578999999999985421 11222222 232 35789999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027824 162 NVENAFTEVLTQIYK 176 (218)
Q Consensus 162 ~v~~~~~~i~~~i~~ 176 (218)
|++++|+++++.+..
T Consensus 423 GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 423 GVGDLLDEALDSLKV 437 (712)
T ss_pred CchHHHHHHHHhccc
Confidence 999999999987643
No 196
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.83 E-value=1e-18 Score=132.58 Aligned_cols=151 Identities=25% Similarity=0.232 Sum_probs=102.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh-------hhhhhhhcCCc
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR-------AITSAYYRGAV 87 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d 87 (218)
+|+++|++|+|||||+++|.+........+..+.+.....+.+.+ ..+++||+||..+.. .....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998764333333333444455555554 568999999964322 22345789999
Q ss_pred EEEEEEECCChh-hHHHHHHHHHHH-----------------------------------------Hhh-----------
Q 027824 88 GALLVYDVTRHA-TFQNVGRWLREL-----------------------------------------REH----------- 114 (218)
Q Consensus 88 ~~i~v~d~~~~~-s~~~~~~~~~~i-----------------------------------------~~~----------- 114 (218)
++++|+|++++. ..+.+...+... ..+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 333333333211 000
Q ss_pred -----------c--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824 115 -----------T--DPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 115 -----------~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
. ..-+|+++|+||+|+.. .+++..++.. ..++++||+++.|++++|+.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 02258999999999843 3444455443 4589999999999999999888754
No 197
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.82 E-value=1.9e-19 Score=148.21 Aligned_cols=157 Identities=15% Similarity=0.092 Sum_probs=104.9
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCc--CCCC---------------------------CcccceeEEEEEEEEECCe
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNE--FNLE---------------------------SKSTIGVEFATRSLRIDNK 60 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~--~~~~---------------------------~~~t~~~~~~~~~~~~~~~ 60 (218)
..+.++|+++|+.++|||||+.+|+... .... .....+.+.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 3456999999999999999999998521 1100 0011233333334445555
Q ss_pred EEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHH--HHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc---
Q 027824 61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNV--GRWLRELREHTDPNIIVMLIGNKTDLRHLVA--- 135 (218)
Q Consensus 61 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--- 135 (218)
.+.+.|||+||++.|.......+..+|++++|+|+++++++... ..++... ... ...|+|+++||+|+.+..+
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~-~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTL-GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHc-CCCeEEEEEEChhccCccHHHH
Confidence 67899999999998877676678899999999999987533111 1112222 222 2357999999999964222
Q ss_pred -cCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHHH
Q 027824 136 -VSTEDGKAFAEQES-----LYFMETSALDATNVENAFT 168 (218)
Q Consensus 136 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~ 168 (218)
...++++++++..+ ++++++||++|.|+++.+.
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 12344566666654 5799999999999987543
No 198
>PRK10218 GTP-binding protein; Provisional
Probab=99.82 E-value=1.1e-18 Score=147.63 Aligned_cols=159 Identities=14% Similarity=0.172 Sum_probs=115.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc--CcCCCCC------------cccceeEEEEEEEEECCeEEEEEEEeCCCchhhhh
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTK--NEFNLES------------KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRA 77 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 77 (218)
...+|+++|+.++|||||+++|+. +.+.... ..+.++++......+....+.+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 457999999999999999999986 3332211 23456677666666666778999999999999999
Q ss_pred hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHH-------cC
Q 027824 78 ITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA-VSTEDGKAFAEQ-------ES 149 (218)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~ 149 (218)
.+..+++.+|++|+|+|+.++...+. ..++..+.. .++|.++++||+|+...+. ...++..++... ..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 99999999999999999987643332 333333332 5688999999999865322 112233333322 35
Q ss_pred CeEEEEccCCCC----------CHHHHHHHHHHHH
Q 027824 150 LYFMETSALDAT----------NVENAFTEVLTQI 174 (218)
Q Consensus 150 ~~~~~~Sa~~~~----------~v~~~~~~i~~~i 174 (218)
++++.+||.+|. ++..+|+.|++.+
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 779999999997 5777777776654
No 199
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.81 E-value=3.2e-19 Score=146.92 Aligned_cols=156 Identities=17% Similarity=0.144 Sum_probs=102.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCC-----------------------------CcccceeEEEEEEEEECCeE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLE-----------------------------SKSTIGVEFATRSLRIDNKV 61 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~ 61 (218)
.+.++|+++|++++|||||+++|+....... .....|++.......+....
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 4469999999999999999999984321110 00123344444444455556
Q ss_pred EEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc----c
Q 027824 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQN-VGRWLRELREHTDPNIIVMLIGNKTDLRHLVA----V 136 (218)
Q Consensus 62 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----~ 136 (218)
+.+.+|||||++.|.......+..+|++|+|+|+++...+.. ...++..+... ...|+++++||+|+....+ .
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHH
Confidence 789999999998887665566789999999999987322211 12222222221 2246999999999965221 1
Q ss_pred CHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHHH
Q 027824 137 STEDGKAFAEQES-----LYFMETSALDATNVENAFT 168 (218)
Q Consensus 137 ~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~ 168 (218)
..+++.+++...+ ++++++||++|.|+++...
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 2234555555544 5799999999999987543
No 200
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.81 E-value=9.3e-19 Score=147.57 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcc----cceeEEEEEEEE------------ECCeEEEEEEEeCCCchhhhh
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKS----TIGVEFATRSLR------------IDNKVVKAQIWDTAGQERYRA 77 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~----t~~~~~~~~~~~------------~~~~~~~~~i~D~~G~~~~~~ 77 (218)
.-|+++|++++|||||+++|.+..+...... +.+......... +......+.+|||||++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 4699999999999999999998766433222 222222111110 001112388999999999999
Q ss_pred hhhhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc------------CHHH--
Q 027824 78 ITSAYYRGAVGALLVYDVTR---HATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV------------STED-- 140 (218)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~------------~~~~-- 140 (218)
++..+++.+|++++|+|+++ +.+++.+. .+. ..+.|+++++||+|+...... ....
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 99999999999999999997 44444432 222 246899999999999642110 0000
Q ss_pred ----------HHHHHH------------H--cCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027824 141 ----------GKAFAE------------Q--ESLYFMETSALDATNVENAFTEVLTQIYK 176 (218)
Q Consensus 141 ----------~~~~~~------------~--~~~~~~~~Sa~~~~~v~~~~~~i~~~i~~ 176 (218)
..++.. . ..++++.+||++|+|+++++.++.....+
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 011111 1 13679999999999999999988765443
No 201
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.81 E-value=8.6e-19 Score=120.81 Aligned_cols=136 Identities=24% Similarity=0.262 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc----hhhhhhhhhhhcCCcEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ----ERYRAITSAYYRGAVGA 89 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~ 89 (218)
-||+++|+.|||||||+++|.+... .+..|..+.+. =.++||||. ..+..........+|.+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V 67 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVV 67 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEE
Confidence 3899999999999999999988654 34455444432 135899993 33444444455699999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCHHHHHH
Q 027824 90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFT 168 (218)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~ 168 (218)
+++.|++++.++-. ..+... -..|+|-|+||+|+... ..+.+.++++.+..|+. +|++|+.+|+|++++.+
T Consensus 68 ~ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 68 LLLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred EEEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence 99999998743211 112222 35799999999999732 34556788888888875 89999999999999998
Q ss_pred HHH
Q 027824 169 EVL 171 (218)
Q Consensus 169 ~i~ 171 (218)
+|-
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 873
No 202
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=1.2e-18 Score=125.72 Aligned_cols=150 Identities=18% Similarity=0.242 Sum_probs=99.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCch----------hhhhhhhhhhc
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE----------RYRAITSAYYR 84 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~ 84 (218)
.|+++|++|+|||||++.+.++.+.....++.+.+.....+..+. .+.+||+||.. .+......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996555454445555555444444443 78899999942 23444444443
Q ss_pred ---CCcEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHH--HcCCeEEEE
Q 027824 85 ---GAVGALLVYDVTRHATF--QNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV--STEDGKAFAE--QESLYFMET 155 (218)
Q Consensus 85 ---~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~--~~~~~~~~~ 155 (218)
+++++++++|..+..+. ..+..|+.. .+.|+++++||+|+....+. .......... ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 45788999998865322 223334332 24789999999998543221 1122222332 244679999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 027824 156 SALDATNVENAFTEVLTQ 173 (218)
Q Consensus 156 Sa~~~~~v~~~~~~i~~~ 173 (218)
|++++.++++++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 203
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=6.8e-20 Score=123.44 Aligned_cols=159 Identities=23% Similarity=0.325 Sum_probs=118.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 91 (218)
...+|+++|-.|+|||++..++--.... ...|++++++... ..+++++++||.+|+-..+..|+.|+.+.|++||
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~v----~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVETV----PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcccc----ccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 5689999999999999999988766653 3447777665433 3367889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCcccC---HHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027824 92 VYDVTRHATFQNVGR-WLRELREHTDPNIIVMLIGNKTDLRHLVAVS---TEDGKAFAEQESLYFMETSALDATNVENAF 167 (218)
Q Consensus 92 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (218)
|+|.+|++.+..... ++..+....-.+..++|++||.|.....-.+ .....+-.+..-+.+|++||.+|+|++..+
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 999999876654433 3334433323567889999999986532111 111122233334679999999999999999
Q ss_pred HHHHHHHH
Q 027824 168 TEVLTQIY 175 (218)
Q Consensus 168 ~~i~~~i~ 175 (218)
+|+.+.+.
T Consensus 172 DWL~~~l~ 179 (182)
T KOG0072|consen 172 DWLQRPLK 179 (182)
T ss_pred HHHHHHHh
Confidence 99988664
No 204
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.81 E-value=7.1e-19 Score=148.85 Aligned_cols=157 Identities=17% Similarity=0.208 Sum_probs=113.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC--cCCCCC------------cccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhh
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKN--EFNLES------------KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAIT 79 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~--~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 79 (218)
.+|+++|+.++|||||+++|+.. .+.... ....++++......+....+.+.||||||+.+|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 47999999999999999999863 222111 1223455555544455556789999999999999888
Q ss_pred hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHH-------HcCCe
Q 027824 80 SAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV-STEDGKAFAE-------QESLY 151 (218)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~ 151 (218)
..+++.+|++++|+|+.++. ......|+..+.. .++|+|+++||+|+.+.+.. ..++...+.. ...++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 99999999999999998753 3344556666554 46889999999998653321 1233344432 23578
Q ss_pred EEEEccCCCC----------CHHHHHHHHHHHH
Q 027824 152 FMETSALDAT----------NVENAFTEVLTQI 174 (218)
Q Consensus 152 ~~~~Sa~~~~----------~v~~~~~~i~~~i 174 (218)
++.+||++|. |+..+|+.|++.+
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 9999999995 7999998888765
No 205
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.81 E-value=1.8e-18 Score=131.49 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=81.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCC--------------C--cccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLE--------------S--KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI 78 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~--------------~--~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 78 (218)
+|+++|++++|||||+++|+....... . ....+.++......+.....++.+|||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999976421100 0 011223333333444445578999999999999888
Q ss_pred hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824 79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131 (218)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 131 (218)
+..+++.+|++++|+|++++... ....|+..+.. .++|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence 88899999999999999986543 23444454443 468999999999986
No 206
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=5e-19 Score=132.40 Aligned_cols=149 Identities=25% Similarity=0.205 Sum_probs=95.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCC-----------------------------cccceeEEEEEEEEECCeEEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLES-----------------------------KSTIGVEFATRSLRIDNKVVKAQ 65 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~~~~~~ 65 (218)
||+++|++++|||||+++|+........ ....+++.......+.....++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999764321110 00022223233333333445789
Q ss_pred EEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc----CHHHH
Q 027824 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV----STEDG 141 (218)
Q Consensus 66 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~ 141 (218)
+|||||+..|.......++.+|++|+|+|++++..-.. ......+... ...++|+|+||+|+...... ...+.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 99999998887666667899999999999987632221 1112222221 22457889999998653221 12234
Q ss_pred HHHHHHcC---CeEEEEccCCCCCHHHH
Q 027824 142 KAFAEQES---LYFMETSALDATNVENA 166 (218)
Q Consensus 142 ~~~~~~~~---~~~~~~Sa~~~~~v~~~ 166 (218)
++++...+ .+++.+||+++.|+++.
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 45555555 35899999999998753
No 207
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=8.2e-18 Score=118.55 Aligned_cols=159 Identities=25% Similarity=0.375 Sum_probs=119.8
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcC--------CCCCcc--cceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEF--------NLESKS--TIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI 78 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~--------~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 78 (218)
......||++.|+.++||||+++++..... ...+.. ..++......+.+.+. ..+.+++||||++|.-+
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-TGVHLFGTPGQERFKFM 84 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-ceEEEecCCCcHHHHHH
Confidence 445668999999999999999999987663 111211 1233333444444442 46799999999999999
Q ss_pred hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCeEEEEc
Q 027824 79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE--SLYFMETS 156 (218)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~S 156 (218)
|..+.+++.+.|+++|.+.+..+ .....+..+.... .+|++|+.||.|+.... ..++.+++.... ..++++.+
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi~~~ 159 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVIEID 159 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCC--CHHHHHHHHHhccCCCceeeee
Confidence 99999999999999999998888 4444455554432 28999999999998744 345666666654 78999999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 027824 157 ALDATNVENAFTEVLTQ 173 (218)
Q Consensus 157 a~~~~~v~~~~~~i~~~ 173 (218)
|.++++..+.+..+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999998887664
No 208
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.81 E-value=1e-18 Score=142.71 Aligned_cols=162 Identities=20% Similarity=0.174 Sum_probs=105.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCC---cccceeEEEEE------------------EEEECC------eEEE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES---KSTIGVEFATR------------------SLRIDN------KVVK 63 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~---~~t~~~~~~~~------------------~~~~~~------~~~~ 63 (218)
+..++|+++|++++|||||+++|.+....... ....+...... ....+. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 45689999999999999999999754221111 01111111100 000011 1357
Q ss_pred EEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CHHHH
Q 027824 64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV--STEDG 141 (218)
Q Consensus 64 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~ 141 (218)
+.+||+||++.|...+......+|++++|+|++++.........+..+... ...|+++++||+|+.+.... ..+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 899999999999888888888999999999999653111222223333222 23468999999999653221 22344
Q ss_pred HHHHHHc---CCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824 142 KAFAEQE---SLYFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 142 ~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
.++.... +++++++||++++|+++++++|...+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 4444432 67899999999999999999987654
No 209
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=7.4e-19 Score=140.26 Aligned_cols=148 Identities=20% Similarity=0.151 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCC-cccceeEEEEEEEEECCeEEEEEEEeCCCchhh-----h----hhhhhhh
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLES-KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY-----R----AITSAYY 83 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~----~~~~~~~ 83 (218)
..|+++|.|++|||||+|||++....... .|..+.+.........+ ..+.++||+|.+.. . ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999998765433 25555555555555554 45899999996532 2 2234567
Q ss_pred cCCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCCC
Q 027824 84 RGAVGALLVYDVTRHATFQN--VGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL-YFMETSALDA 160 (218)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 160 (218)
..||++|||+|...+-+-.+ +..|+. ..++|+|+|+||+|-.. .+........+|+ .++.+||.+|
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr------~~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg 150 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILR------RSKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHG 150 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHH------hcCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhc
Confidence 89999999999987544332 222222 25689999999999642 1222222333555 5899999999
Q ss_pred CCHHHHHHHHHHHH
Q 027824 161 TNVENAFTEVLTQI 174 (218)
Q Consensus 161 ~~v~~~~~~i~~~i 174 (218)
.|+.++++.++..+
T Consensus 151 ~Gi~dLld~v~~~l 164 (444)
T COG1160 151 RGIGDLLDAVLELL 164 (444)
T ss_pred cCHHHHHHHHHhhc
Confidence 99999999999876
No 210
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=3.2e-18 Score=145.54 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=105.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC---cCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKN---EFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 91 (218)
-|.++|+.++|||||+++|++. .+..+.....+++.....+...+ ...+.+||+||++.|.......+.++|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 5889999999999999999863 33333334444444333333322 2347999999999998777778899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccC--HHHHHHHHHHcC---CeEEEEccCCCCCHHH
Q 027824 92 VYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAVS--TEDGKAFAEQES---LYFMETSALDATNVEN 165 (218)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~ 165 (218)
|+|++++..-+ ..+.+..+.. .++| +|||+||+|+.++.... .++.+++....+ .+++.+||++|.|+++
T Consensus 81 VVda~eg~~~q-T~ehl~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 81 VVACDDGVMAQ-TREHLAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEECCCCCcHH-HHHHHHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 99998742211 1122233322 2345 57999999996532221 234445554444 6899999999999999
Q ss_pred HHHHHHHHH
Q 027824 166 AFTEVLTQI 174 (218)
Q Consensus 166 ~~~~i~~~i 174 (218)
+++.|....
T Consensus 157 L~~~L~~~~ 165 (614)
T PRK10512 157 LREHLLQLP 165 (614)
T ss_pred HHHHHHHhh
Confidence 999887643
No 211
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=2.2e-18 Score=137.61 Aligned_cols=160 Identities=23% Similarity=0.195 Sum_probs=113.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh---------hhh--hh
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY---------RAI--TS 80 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~--~~ 80 (218)
..++|+++|.|++|||||+|++++....... +..|+++......+....-.+.++||.|...- .+. ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 4699999999999999999999998865544 34444444444444333345699999993221 111 22
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----cCCeEEEE
Q 027824 81 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-----ESLYFMET 155 (218)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~ 155 (218)
..+..+|.+++|+|++.+.+-+. .+.+......+.++++++||.|+.+......++.++.... ..++++++
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD----~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQD----LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHH----HHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 45678999999999999866555 2333333347889999999999977654554554433333 25689999
Q ss_pred ccCCCCCHHHHHHHHHHHHHH
Q 027824 156 SALDATNVENAFTEVLTQIYK 176 (218)
Q Consensus 156 Sa~~~~~v~~~~~~i~~~i~~ 176 (218)
||+++.+++.+|..+.+....
T Consensus 332 SA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred EecCCCChHHHHHHHHHHHHH
Confidence 999999999999988775443
No 212
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=6.2e-18 Score=124.79 Aligned_cols=148 Identities=18% Similarity=0.145 Sum_probs=98.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCC-------C-------CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFN-------L-------ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI 78 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~-------~-------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 78 (218)
.++|+++|+.++|||||+++|+..... . ......+.+.......+.....++.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 478999999999999999999864100 0 00012334444444455555667899999999888777
Q ss_pred hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHc-----C
Q 027824 79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAV---STEDGKAFAEQE-----S 149 (218)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~-----~ 149 (218)
....+..+|++++|+|+..+-.-+ ....+..+.. .++| +|+++||+|+....+. ...+++++.... +
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 777788999999999998753322 2223333333 4566 7899999998643221 112344444443 4
Q ss_pred CeEEEEccCCCCCHH
Q 027824 150 LYFMETSALDATNVE 164 (218)
Q Consensus 150 ~~~~~~Sa~~~~~v~ 164 (218)
++++.+||.+|.++.
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 689999999998753
No 213
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.79 E-value=2.5e-18 Score=140.45 Aligned_cols=163 Identities=20% Similarity=0.202 Sum_probs=103.7
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCC---cccceeEEEEE--EEE----------------EC------CeE
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES---KSTIGVEFATR--SLR----------------ID------NKV 61 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~---~~t~~~~~~~~--~~~----------------~~------~~~ 61 (218)
...+.++|+++|+.++|||||+.+|.+....... ....+.+.... .+. .+ ...
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 4556799999999999999999999653211111 11122221110 000 00 012
Q ss_pred EEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CH
Q 027824 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHA-TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV--ST 138 (218)
Q Consensus 62 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~ 138 (218)
..+.+||+||+..|..........+|++++|+|++++. ..+.... +..+... ...|+++|+||+|+.++.+. ..
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDII--GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence 57899999999888776666667789999999999643 1111111 2222221 22468999999999654322 12
Q ss_pred HHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824 139 EDGKAFAEQ---ESLYFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 139 ~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
++.+.++.. .+.+++++||+++.|++++++.|...+
T Consensus 162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 334444443 257899999999999999999987654
No 214
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.79 E-value=1.2e-17 Score=141.39 Aligned_cols=156 Identities=16% Similarity=0.160 Sum_probs=101.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcc----cceeEEEEEEEE--ECCeE-----E-----EEEEEeCCCchhh
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKS----TIGVEFATRSLR--IDNKV-----V-----KAQIWDTAGQERY 75 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~----t~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~G~~~~ 75 (218)
+...|+++|++++|||||+++|.+......... +.+.++...... ..+.. + .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 346799999999999999999987654322221 222222111110 00111 1 2689999999999
Q ss_pred hhhhhhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc----CH--------H-
Q 027824 76 RAITSAYYRGAVGALLVYDVTR---HATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV----ST--------E- 139 (218)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~----~~--------~- 139 (218)
..++...+..+|++++|+|+++ +.+++.+. .+.. .++|+++++||+|+...... .. .
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 9988888899999999999997 45554432 2222 47899999999998521110 00 0
Q ss_pred ----------HHHHHHHH---------------cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824 140 ----------DGKAFAEQ---------------ESLYFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 140 ----------~~~~~~~~---------------~~~~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
+...+... ..++++.+||++|.|+++++..+...+
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 01111111 135799999999999999998876544
No 215
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.78 E-value=4.6e-18 Score=136.12 Aligned_cols=156 Identities=17% Similarity=0.195 Sum_probs=112.4
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCC-cccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh--------hh
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES-KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI--------TS 80 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~ 80 (218)
...-++|+++|.|++|||||+|.|++......+ .+.++.++-...+.+++ +.+.+.||.|..+-.+. ..
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~ 291 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAK 291 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHH
Confidence 344689999999999999999999998865544 35555665556666666 67899999996544332 23
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027824 81 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDA 160 (218)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (218)
..++.||.+++|+|.+.+.+-... ..+. ....+.|+++|.||.|+..+...... ....+.+++.+|++++
T Consensus 292 ~~i~~ADlvL~v~D~~~~~~~~d~----~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~ 361 (454)
T COG0486 292 KAIEEADLVLFVLDASQPLDKEDL----ALIE-LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTG 361 (454)
T ss_pred HHHHhCCEEEEEEeCCCCCchhhH----HHHH-hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCc
Confidence 457899999999999986322221 1111 33477899999999999775442211 1223457999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 027824 161 TNVENAFTEVLTQIYKI 177 (218)
Q Consensus 161 ~~v~~~~~~i~~~i~~~ 177 (218)
+|++.+.+.|...+...
T Consensus 362 ~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 362 EGLDALREAIKQLFGKG 378 (454)
T ss_pred cCHHHHHHHHHHHHhhc
Confidence 99999999888776554
No 216
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.78 E-value=1.1e-18 Score=141.89 Aligned_cols=166 Identities=26% Similarity=0.289 Sum_probs=125.0
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcE
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG 88 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 88 (218)
.....+||+++|+.|+||||||-.++...|.+.-.+... .+ .....+....+...|.|++..++-+.....-++.+|+
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~-~i-~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v 82 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP-RI-LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV 82 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC-cc-ccCCccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence 334469999999999999999999999988665432211 11 1112334445678999999776666666777899999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHcC-C-eEEEEccCCCCC
Q 027824 89 ALLVYDVTRHATFQNV-GRWLRELREHTD--PNIIVMLIGNKTDLRHLVAVSTED-GKAFAEQES-L-YFMETSALDATN 162 (218)
Q Consensus 89 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~~ 162 (218)
+.++|+++++++++.+ ..|+..+.+..+ ..+|+|+|+||+|.......+.+. ...+..++. + ..++|||++-.+
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN 162 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence 9999999999999999 459999988764 789999999999997655543333 344444332 2 489999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027824 163 VENAFTEVLTQIYK 176 (218)
Q Consensus 163 v~~~~~~i~~~i~~ 176 (218)
+.++|+..-+++..
T Consensus 163 ~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 163 VSELFYYAQKAVIH 176 (625)
T ss_pred hHhhhhhhhheeec
Confidence 99999988776644
No 217
>PRK12736 elongation factor Tu; Reviewed
Probab=99.77 E-value=1.8e-17 Score=135.02 Aligned_cols=148 Identities=18% Similarity=0.142 Sum_probs=98.5
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCC--------------CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL--------------ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY 75 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 75 (218)
..+.++|+++|+.++|||||+++|++..... ......+.+.......+......+.+||+||+.+|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 4456999999999999999999998631100 00112334444444555555567899999999988
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHcC--
Q 027824 76 RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAVS---TEDGKAFAEQES-- 149 (218)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~-- 149 (218)
.......+..+|++++|+|+.++..-+. ..++..+.. .++| +|+++||+|+.+..+.. .++..++....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 7777667789999999999987532222 222333332 3577 67889999986433221 224455555544
Q ss_pred ---CeEEEEccCCCC
Q 027824 150 ---LYFMETSALDAT 161 (218)
Q Consensus 150 ---~~~~~~Sa~~~~ 161 (218)
++++.+||+++.
T Consensus 165 ~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 165 GDDIPVIRGSALKAL 179 (394)
T ss_pred cCCccEEEeeccccc
Confidence 579999999983
No 218
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.77 E-value=7.1e-18 Score=126.66 Aligned_cols=113 Identities=23% Similarity=0.318 Sum_probs=80.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCC-----------------cccceeEEEEEEEE--E---CCeEEEEEEEeCCCc
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLES-----------------KSTIGVEFATRSLR--I---DNKVVKAQIWDTAGQ 72 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~--~---~~~~~~~~i~D~~G~ 72 (218)
+|+++|+.++|||||+++|+........ ....+.++....+. + ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875433210 01122222222221 1 345688999999999
Q ss_pred hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131 (218)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 131 (218)
.++......++..+|++++|+|+++..+... ..|+..+.. .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9998888888999999999999987765533 334444332 458999999999975
No 219
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=4.9e-17 Score=117.12 Aligned_cols=162 Identities=17% Similarity=0.230 Sum_probs=110.5
Q ss_pred CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCC----------chhhhh
Q 027824 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG----------QERYRA 77 (218)
Q Consensus 8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~ 77 (218)
-|.+....|+++|.+++|||||||+|+++.--.-...|.|.+.....+.+++. +.+.|.|| .+.+..
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence 35567789999999999999999999997643444466777776666666664 67999999 455566
Q ss_pred hhhhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH--HHHH-HHHHHcCCe
Q 027824 78 ITSAYYR---GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVST--EDGK-AFAEQESLY 151 (218)
Q Consensus 78 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~-~~~~~~~~~ 151 (218)
+...|++ +..++++++|+..+-.-.+. +++.-+. ..++|++|++||+|.....+... ...+ .+.......
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~---~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~ 171 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLL---ELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDD 171 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHH---HcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCcc
Confidence 6666664 45678889998765333221 2222232 26799999999999866433321 1122 122222222
Q ss_pred --EEEEccCCCCCHHHHHHHHHHHHHH
Q 027824 152 --FMETSALDATNVENAFTEVLTQIYK 176 (218)
Q Consensus 152 --~~~~Sa~~~~~v~~~~~~i~~~i~~ 176 (218)
++..|+..+.|++++...|.+.+..
T Consensus 172 ~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 172 QWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred ceEEEEecccccCHHHHHHHHHHHhhc
Confidence 7888999999999999888876643
No 220
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.76 E-value=6.9e-18 Score=127.17 Aligned_cols=147 Identities=18% Similarity=0.137 Sum_probs=93.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCC---------------------------CC--cccceeEEEEEEEEECCeEEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNL---------------------------ES--KSTIGVEFATRSLRIDNKVVKAQ 65 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~---------------------------~~--~~t~~~~~~~~~~~~~~~~~~~~ 65 (218)
+|+++|++++|||||+.+|+...... .. ....+++.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999986431100 00 01122333333334444557889
Q ss_pred EEeCCCchhhhhhhhhhhcCCcEEEEEEECCChh-------hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC--ccc
Q 027824 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHA-------TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL--VAV 136 (218)
Q Consensus 66 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~--~~~ 136 (218)
+||+||+..+.......++.+|++|+|+|++++. ..+....| ..... . ...|+++++||+|+... .+.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~-~-~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART-L-GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH-c-CCCeEEEEEEccccccccccHH
Confidence 9999999888777777788999999999999852 11222222 22221 1 23689999999999732 111
Q ss_pred CHH----HHHHHHHHc-----CCeEEEEccCCCCCHH
Q 027824 137 STE----DGKAFAEQE-----SLYFMETSALDATNVE 164 (218)
Q Consensus 137 ~~~----~~~~~~~~~-----~~~~~~~Sa~~~~~v~ 164 (218)
..+ ++..+.... +++++.+||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 112 222233343 3679999999999987
No 221
>PRK12735 elongation factor Tu; Reviewed
Probab=99.76 E-value=3.3e-17 Score=133.55 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=104.0
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCc-------C---C--C--CCcccceeEEEEEEEEECCeEEEEEEEeCCCchh
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNE-------F---N--L--ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~-------~---~--~--~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 74 (218)
+..+.++|+++|++++|||||+++|++.. + . . ......|++.......+.....++.++||||+..
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 44567999999999999999999998621 0 0 0 0111234444444444554556789999999998
Q ss_pred hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCccc---CHHHHHHHHHHcC-
Q 027824 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRHLVAV---STEDGKAFAEQES- 149 (218)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~~~~- 149 (218)
|.......+..+|++++|+|+.++...+ ...++..+.. .++|.+ +++||+|+.+..+. ...+++.++..++
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence 8776667788999999999998753222 2233333332 457755 57999999643221 1224455555543
Q ss_pred ----CeEEEEccCCCC----------CHHHHHHHHHH
Q 027824 150 ----LYFMETSALDAT----------NVENAFTEVLT 172 (218)
Q Consensus 150 ----~~~~~~Sa~~~~----------~v~~~~~~i~~ 172 (218)
++++.+||.++. ++.++++.|..
T Consensus 164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~ 200 (396)
T PRK12735 164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDS 200 (396)
T ss_pred CcCceeEEecchhccccCCCCCcccccHHHHHHHHHh
Confidence 679999999985 45555555544
No 222
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=3e-17 Score=133.79 Aligned_cols=149 Identities=17% Similarity=0.115 Sum_probs=99.0
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcC------C------C--CCcccceeEEEEEEEEECCeEEEEEEEeCCCchh
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEF------N------L--ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~------~------~--~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 74 (218)
+..+.++|+++|+.++|||||+++|++... . . ......+++.....+.+......+.+|||||++.
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 356679999999999999999999974210 0 0 0011233444444455555566789999999998
Q ss_pred hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCcccC---HHHHHHHHHHcC-
Q 027824 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRHLVAVS---TEDGKAFAEQES- 149 (218)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 149 (218)
|..........+|++++|+|+.++...+. ...+..+.. .++|.+ +++||+|+.+..+.. .+++++++...+
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 87666666778999999999987432222 222333332 356655 689999986533221 234566666554
Q ss_pred ----CeEEEEccCCCC
Q 027824 150 ----LYFMETSALDAT 161 (218)
Q Consensus 150 ----~~~~~~Sa~~~~ 161 (218)
++++.+||.++.
T Consensus 164 ~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 164 PGDDTPIIRGSALKAL 179 (394)
T ss_pred CccCccEEECcccccc
Confidence 789999999874
No 223
>COG2262 HflX GTPases [General function prediction only]
Probab=99.75 E-value=6.9e-17 Score=127.29 Aligned_cols=167 Identities=17% Similarity=0.145 Sum_probs=123.9
Q ss_pred CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc---------hhhhhh
Q 027824 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ---------ERYRAI 78 (218)
Q Consensus 8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~ 78 (218)
........|.++|..++|||||+|.|++........-..+.+...+.+.+.+ ...+.+.||.|- +.|.+.
T Consensus 187 R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksT 265 (411)
T COG2262 187 RSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKST 265 (411)
T ss_pred hcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHH
Confidence 4456678999999999999999999998776655555556777777777765 346789999992 223322
Q ss_pred hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC
Q 027824 79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 158 (218)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (218)
. .-...+|.++.|+|++++...+.+..-...+......++|+|+|.||+|+..+.. .......... ..+.+||+
T Consensus 266 L-EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~ 339 (411)
T COG2262 266 L-EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAK 339 (411)
T ss_pred H-HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEec
Confidence 2 2346899999999999998777777777777777667799999999999754332 1111122122 58999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhh
Q 027824 159 DATNVENAFTEVLTQIYKIVSKR 181 (218)
Q Consensus 159 ~~~~v~~~~~~i~~~i~~~~~~~ 181 (218)
+++|++.+++.|.+.+.......
T Consensus 340 ~~~gl~~L~~~i~~~l~~~~~~~ 362 (411)
T COG2262 340 TGEGLDLLRERIIELLSGLRTEV 362 (411)
T ss_pred cCcCHHHHHHHHHHHhhhcccce
Confidence 99999999999998887554433
No 224
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.75 E-value=4.2e-17 Score=124.13 Aligned_cols=156 Identities=16% Similarity=0.184 Sum_probs=116.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh----hhhhh---hhcC
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR----AITSA---YYRG 85 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~---~~~~ 85 (218)
...|.++|.|++|||||++.+.+........+.++......++.+++-. ++.+-|+||.-+-. .+-.. .++.
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHh
Confidence 4568899999999999999999887665555666666666666665543 48999999943222 22223 3467
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCC
Q 027824 86 AVGALLVYDVTRH---ATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL-YFMETSALD 159 (218)
Q Consensus 86 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (218)
+..++||+|++.+ ..++.+..+..++..+.+ .+.|.++|+||+|+++... ....+++....- .++.+||+.
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~---~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK---NLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH---HHHHHHHHHcCCCcEEEeeecc
Confidence 8999999999988 888888887777766655 7899999999999863221 223556665443 499999999
Q ss_pred CCCHHHHHHHHHH
Q 027824 160 ATNVENAFTEVLT 172 (218)
Q Consensus 160 ~~~v~~~~~~i~~ 172 (218)
++++++++..|-+
T Consensus 352 ~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 352 GEGLEELLNGLRE 364 (366)
T ss_pred ccchHHHHHHHhh
Confidence 9999999987754
No 225
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.75 E-value=4.6e-17 Score=135.61 Aligned_cols=153 Identities=16% Similarity=0.156 Sum_probs=115.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCch------hhhhhhhhhh--c
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE------RYRAITSAYY--R 84 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~~~~~~~~~~--~ 84 (218)
..+|+++|+|++|||||+|++++.....-..|..+++.........+. .+++.|.||.- .-......++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 356999999999999999999998887777787776665555655554 47999999932 2223334443 4
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027824 85 GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVE 164 (218)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 164 (218)
.+|+++-|+|+++.+.- +....+..+-+.|++++.|++|....+-+. -+.+++.+..|+|++.++|++|.|++
T Consensus 81 ~~D~ivnVvDAtnLeRn------LyltlQLlE~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDATNLERN------LYLTLQLLELGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEcccchHHHH------HHHHHHHHHcCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 67999999999985421 222223333678999999999987654444 34677888899999999999999999
Q ss_pred HHHHHHHHHH
Q 027824 165 NAFTEVLTQI 174 (218)
Q Consensus 165 ~~~~~i~~~i 174 (218)
+++..+.+..
T Consensus 154 ~l~~~i~~~~ 163 (653)
T COG0370 154 ELKRAIIELA 163 (653)
T ss_pred HHHHHHHHhc
Confidence 9999887644
No 226
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.74 E-value=1.2e-16 Score=121.16 Aligned_cols=163 Identities=20% Similarity=0.174 Sum_probs=107.1
Q ss_pred CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCch----hhh-----h
Q 027824 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE----RYR-----A 77 (218)
Q Consensus 7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~-----~ 77 (218)
+.+..+.++|+|+|.|++|||||.|.+++.........+.++... ..-.+.....++.++||||.- ..+ +
T Consensus 66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~-ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s 144 (379)
T KOG1423|consen 66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHR-ILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMS 144 (379)
T ss_pred chhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeee-eeEEEecCceEEEEecCCcccccchhhhHHHHHH
Confidence 345567899999999999999999999999988777665544433 333344455689999999931 111 1
Q ss_pred ---hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-------------cCHHHH
Q 027824 78 ---ITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA-------------VSTEDG 141 (218)
Q Consensus 78 ---~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-------------~~~~~~ 141 (218)
.....+.+||.+++|+|+++....-. ...+..+..+ ..+|-|+++||.|...... ++. ..
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~-~k 220 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAK-LK 220 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccch-hh
Confidence 12234578999999999996322111 1223344433 4678999999999753311 110 01
Q ss_pred HHHHHH-c------------CC----eEEEEccCCCCCHHHHHHHHHHHH
Q 027824 142 KAFAEQ-E------------SL----YFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 142 ~~~~~~-~------------~~----~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
.++..+ . |. .+|.+||++|+|++++-++|..++
T Consensus 221 l~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 221 LEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred hhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 111111 1 12 289999999999999999998754
No 227
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.74 E-value=3.3e-17 Score=122.97 Aligned_cols=158 Identities=18% Similarity=0.305 Sum_probs=101.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccce--eEEEEEEEEECCeEEEEEEEeCCCchhhhhh-----hhhhhcCCc
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIG--VEFATRSLRIDNKVVKAQIWDTAGQERYRAI-----TSAYYRGAV 87 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----~~~~~~~~d 87 (218)
||+++|+.++||||+.+.++++..+.+.. ..+ .+.....+.. ...+.+.+||+||+..+... ....+++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~-~L~~T~~ve~~~v~~-~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTL-RLEPTIDVEKSHVRF-LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGG-G-----SEEEEEEEC-TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhcc-ccCCcCCceEEEEec-CCCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence 79999999999999999999877654442 222 2222222322 23468999999998755443 567789999
Q ss_pred EEEEEEECCChh---hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC--cccCH----HHHHHHHHHcC---CeEEEE
Q 027824 88 GALLVYDVTRHA---TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL--VAVST----EDGKAFAEQES---LYFMET 155 (218)
Q Consensus 88 ~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~--~~~~~----~~~~~~~~~~~---~~~~~~ 155 (218)
++|||+|+.+.+ .+..+...+..+.... +++.+.|+++|+|+..+ +.... +...+.+...+ +.++.|
T Consensus 79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~T 157 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLT 157 (232)
T ss_dssp EEEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE
T ss_pred EEEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEec
Confidence 999999998443 3444455555555554 78999999999998542 11111 12233333445 789999
Q ss_pred ccCCCCCHHHHHHHHHHHHHH
Q 027824 156 SALDATNVENAFTEVLTQIYK 176 (218)
Q Consensus 156 Sa~~~~~v~~~~~~i~~~i~~ 176 (218)
|..+ +.+-+.|..+++.+..
T Consensus 158 SI~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 158 SIWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp -TTS-THHHHHHHHHHHTTST
T ss_pred cCcC-cHHHHHHHHHHHHHcc
Confidence 9998 6888888888886653
No 228
>CHL00071 tufA elongation factor Tu
Probab=99.73 E-value=1.8e-16 Score=129.69 Aligned_cols=150 Identities=15% Similarity=0.105 Sum_probs=100.1
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCC--------------CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL--------------ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY 75 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 75 (218)
..+.++|+++|++++|||||+++|++..... ......+++.......+.....++.+.|+||+..|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 4556999999999999999999998742110 00112344444444445445567889999999888
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHcC--
Q 027824 76 RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAVS---TEDGKAFAEQES-- 149 (218)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~-- 149 (218)
.......+..+|++++|+|+..+..-+ ....+..+.. .++| +|+++||+|+.+..+.. .+++..+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 777777788999999999998753222 2222333332 4577 77899999996533221 124455555433
Q ss_pred ---CeEEEEccCCCCCH
Q 027824 150 ---LYFMETSALDATNV 163 (218)
Q Consensus 150 ---~~~~~~Sa~~~~~v 163 (218)
++++.+||.+|.++
T Consensus 165 ~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 165 GDDIPIVSGSALLALEA 181 (409)
T ss_pred CCcceEEEcchhhcccc
Confidence 68999999988743
No 229
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=2.4e-16 Score=120.85 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=109.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCch-----hhhh---h-hhhh
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE-----RYRA---I-TSAY 82 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~---~-~~~~ 82 (218)
....|+|.|.|+||||||++.+++........|.++-.++...+... ...++++||||.- +... . ..+.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~--~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERG--YLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecC--CceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 45789999999999999999999988777666666555555555444 4578999999931 1111 1 1112
Q ss_pred hcCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEEccCC
Q 027824 83 YRGAVGALLVYDVTR--HATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL-YFMETSALD 159 (218)
Q Consensus 83 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (218)
-.-.++++|+||.+. +.+++.-..++..+..... .|+++|.||+|+.....+. ++.......+. ....+++..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~~--~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKLE--EIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHHH--HHHHHHHhhccccccceeeee
Confidence 234678999999984 5677777778888887763 8999999999987644443 33333444443 477788888
Q ss_pred CCCHHHHHHHHHHHH
Q 027824 160 ATNVENAFTEVLTQI 174 (218)
Q Consensus 160 ~~~v~~~~~~i~~~i 174 (218)
+.+++.+-..+....
T Consensus 321 ~~~~d~~~~~v~~~a 335 (346)
T COG1084 321 GCGLDKLREEVRKTA 335 (346)
T ss_pred hhhHHHHHHHHHHHh
Confidence 888887766665543
No 230
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.72 E-value=9.9e-17 Score=120.39 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=79.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCC----------------CcccceeEEEEEEEEEC--------CeEEEEEEEeCC
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLE----------------SKSTIGVEFATRSLRID--------NKVVKAQIWDTA 70 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------~~~~~~~i~D~~ 70 (218)
+|+++|+.++|||||+.+|+....... .....++......+.+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999976432110 00111111122222232 336889999999
Q ss_pred CchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824 71 GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131 (218)
Q Consensus 71 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 131 (218)
|+..|......+++.+|++++|+|+.++...+....| ..+. ..++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQAL---KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCCcc
Confidence 9999999999999999999999999987655442222 2222 2467999999999975
No 231
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.72 E-value=3.6e-16 Score=117.81 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=96.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcc-----------------------cceeEEEEEEE-------------EEC
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKS-----------------------TIGVEFATRSL-------------RID 58 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~-----------------------t~~~~~~~~~~-------------~~~ 58 (218)
||+++|+.++|||||+.+|..+.+...... ..+.+.....+ .+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999987655331110 01111000000 001
Q ss_pred CeEEEEEEEeCCCchhhhhhhhhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 027824 59 NKVVKAQIWDTAGQERYRAITSAYYR--GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV 136 (218)
Q Consensus 59 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 136 (218)
.....+.+.|+||+..|.......+. .+|++++|+|+..+..-. ...++..+.. .++|+++++||+|+......
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA---LNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence 11346899999999988665544443 689999999998754322 2233333333 46889999999998543221
Q ss_pred C--HHHHHHHHH--------------------------HcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824 137 S--TEDGKAFAE--------------------------QESLYFMETSALDATNVENAFTEVLT 172 (218)
Q Consensus 137 ~--~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (218)
. ..+..++.. ...+++|.+|+.+|+|++++...|..
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 1 112222222 01348999999999999999877643
No 232
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.71 E-value=5.1e-16 Score=119.96 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=80.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCc--------------------ccceeEEEEEEEEECCeEEEEEEEeCCCch
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESK--------------------STIGVEFATRSLRIDNKVVKAQIWDTAGQE 73 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~--------------------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 73 (218)
.+|+++|++++|||||+++|+......... ...+.++......+....+.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 579999999999999999997532110000 001233334444555566889999999999
Q ss_pred hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027824 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133 (218)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 133 (218)
+|.......++.+|++|+|+|++++.... ...++..... .++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence 88877777889999999999998764322 2233333322 57899999999998653
No 233
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.70 E-value=1.5e-15 Score=112.73 Aligned_cols=162 Identities=11% Similarity=0.131 Sum_probs=97.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCccccee---EEEEEEEEECCeEEEEEEEeCCCchhhhh-----hhhhhhc
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGV---EFATRSLRIDNKVVKAQIWDTAGQERYRA-----ITSAYYR 84 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~ 84 (218)
+++|+++|.+|+|||||+|.|++.........+.+. +.....+... ....+.+||+||...... +....+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 378999999999999999999986553322222221 1111111111 123689999999643221 1222356
Q ss_pred CCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-----------cCHHHHHHHHH----Hc
Q 027824 85 GAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHLVA-----------VSTEDGKAFAE----QE 148 (218)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~~~~~----~~ 148 (218)
.+|+++++.+. + +... ..|+..+... +.|+++|+||+|+....+ ...++.++... ..
T Consensus 80 ~~d~~l~v~~~--~--~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISST--R--FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCC--C--CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 78988887432 2 2222 3455555543 578999999999843211 11111222222 22
Q ss_pred C---CeEEEEccC--CCCCHHHHHHHHHHHHHHHHhhhh
Q 027824 149 S---LYFMETSAL--DATNVENAFTEVLTQIYKIVSKRA 182 (218)
Q Consensus 149 ~---~~~~~~Sa~--~~~~v~~~~~~i~~~i~~~~~~~~ 182 (218)
+ -++|-+|+. .+.++..+.+.|+..+-+.+..-.
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 191 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRHVF 191 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHHHH
Confidence 2 258999998 568999999999999887765543
No 234
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.7e-15 Score=123.12 Aligned_cols=158 Identities=16% Similarity=0.199 Sum_probs=111.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECC-eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDN-KVVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 91 (218)
..-|.+||+...|||||+..+-.........-..+-.+.-..+..+. ..-.+.++|||||+.|..++..-..-+|.+|+
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL 84 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL 84 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence 46689999999999999999977665333223333333333333331 23468999999999999999888888999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC---------CeEEEEccCCCCC
Q 027824 92 VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQES---------LYFMETSALDATN 162 (218)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~ 162 (218)
|++++|+--.+. ...+......+.|++|++||+|.++. +......-..++| ..++.+||++|+|
T Consensus 85 VVa~dDGv~pQT----iEAI~hak~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 85 VVAADDGVMPQT----IEAINHAKAAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEccCCcchhH----HHHHHHHHHCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 999998643333 33333334478999999999999742 2233333333333 4689999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027824 163 VENAFTEVLTQIYKI 177 (218)
Q Consensus 163 v~~~~~~i~~~i~~~ 177 (218)
+++++..+.-.....
T Consensus 158 i~eLL~~ill~aev~ 172 (509)
T COG0532 158 IDELLELILLLAEVL 172 (509)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998887655444
No 235
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.69 E-value=4.8e-16 Score=120.64 Aligned_cols=142 Identities=13% Similarity=0.201 Sum_probs=92.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCC----------CcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhh-----
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLE----------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRA----- 77 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 77 (218)
.++|+|+|.+|+|||||+|+|++..+... ..+|...+.....+..++..+.+.+|||||......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999999876543 234444555555666677778999999999322110
Q ss_pred ---------------------hhhhhhc--CCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027824 78 ---------------------ITSAYYR--GAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHL 133 (218)
Q Consensus 78 ---------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 133 (218)
.+...+. .+|+++|+++.+.. .+... ...++.+. ..+|+|+|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCCH
Confidence 0101222 46778888887642 11111 22233332 36899999999998542
Q ss_pred --cccCHHHHHHHHHHcCCeEEEEccCC
Q 027824 134 --VAVSTEDGKAFAEQESLYFMETSALD 159 (218)
Q Consensus 134 --~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (218)
........++.+..+++++|......
T Consensus 159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 159 EELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 22334456677778899988766543
No 236
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.69 E-value=4.9e-16 Score=126.99 Aligned_cols=149 Identities=24% Similarity=0.187 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCC-------------c------------------ccceeEEEEEEEEECCeEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLES-------------K------------------STIGVEFATRSLRIDNKVV 62 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~-------------~------------------~t~~~~~~~~~~~~~~~~~ 62 (218)
++|+++|+.++|||||+.+|+........ . ..-+.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999643211100 0 0112222233333344456
Q ss_pred EEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH----
Q 027824 63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVST---- 138 (218)
Q Consensus 63 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~---- 138 (218)
++.+|||||++.|.......+..+|++|+|+|+..+..-+..+.| ..+... ...++|+++||+|+....+...
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLL--GIRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHc--CCCcEEEEEEecccccchHHHHHHHH
Confidence 789999999999877666778899999999999875332222222 222222 1246899999999865322111
Q ss_pred HHHHHHHHHcC---CeEEEEccCCCCCHHH
Q 027824 139 EDGKAFAEQES---LYFMETSALDATNVEN 165 (218)
Q Consensus 139 ~~~~~~~~~~~---~~~~~~Sa~~~~~v~~ 165 (218)
++...+....+ ++++.+||.+|+|+++
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 12233334433 4699999999999886
No 237
>PLN03126 Elongation factor Tu; Provisional
Probab=99.69 E-value=1.2e-15 Score=126.32 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=100.3
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcC------CC--------CCcccceeEEEEEEEEECCeEEEEEEEeCCCchh
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEF------NL--------ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~------~~--------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 74 (218)
...+.++|+++|++++|||||+++|+.... .. ......+++.......+......+.++|+||+..
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 345679999999999999999999985211 00 0112233444444444444456789999999999
Q ss_pred hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHc--
Q 027824 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAV---STEDGKAFAEQE-- 148 (218)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~-- 148 (218)
|.......+..+|++++|+|+.++..-+. .+++..+.. .++| +|+++||+|+.+..+. ..+++..+....
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 98777777889999999999987643332 333333433 4577 7889999999653222 112344555543
Q ss_pred ---CCeEEEEccCCCCC
Q 027824 149 ---SLYFMETSALDATN 162 (218)
Q Consensus 149 ---~~~~~~~Sa~~~~~ 162 (218)
+++++.+|+.++.+
T Consensus 233 ~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 233 PGDDIPIISGSALLALE 249 (478)
T ss_pred CcCcceEEEEEcccccc
Confidence 56799999988753
No 238
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.69 E-value=8.7e-16 Score=128.62 Aligned_cols=119 Identities=17% Similarity=0.203 Sum_probs=82.4
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCc--CCCC-----------C-------cccceeEEEEEEEEECCeEEEEEEEe
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNE--FNLE-----------S-------KSTIGVEFATRSLRIDNKVVKAQIWD 68 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~--~~~~-----------~-------~~t~~~~~~~~~~~~~~~~~~~~i~D 68 (218)
+.....+|+++|++++|||||+++|+... .... . ....+..+......+....+.+.+||
T Consensus 6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliD 85 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD 85 (526)
T ss_pred hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEE
Confidence 34567899999999999999999996411 1000 0 01113333333344444557899999
Q ss_pred CCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131 (218)
Q Consensus 69 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 131 (218)
|||+.+|......+++.+|++|+|+|++++.... ...++..... .++|+++++||+|+.
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh---cCCCEEEEEECCccc
Confidence 9999999877777889999999999998763222 2333333322 578999999999985
No 239
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.69 E-value=2.8e-16 Score=121.52 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=78.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCC----------------CcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLE----------------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI 78 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 78 (218)
+|+++|++++|||||+++|+....... .....+++.......+.....++.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999974221100 0011223333333333334578899999999888888
Q ss_pred hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824 79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132 (218)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 132 (218)
+...++.+|++|+|+|+.++..-.. ...+..+.. .++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 8889999999999999987543222 222333332 5689999999999865
No 240
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.69 E-value=7.9e-16 Score=118.55 Aligned_cols=165 Identities=18% Similarity=0.142 Sum_probs=115.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh----hhhhhhhh---hcC
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER----YRAITSAY---YRG 85 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~ 85 (218)
..-|.++|.|++|||||++.+.+........|.++.....-.+.... .-.+.+-|+||.-+ -..+-..| +..
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 34577999999999999999998876655556655555555555532 33578999999422 22233333 457
Q ss_pred CcEEEEEEECCChh---hHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe--EEEEccC
Q 027824 86 AVGALLVYDVTRHA---TFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY--FMETSAL 158 (218)
Q Consensus 86 ~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~Sa~ 158 (218)
+.++++|+|++..+ ..+.......++..+.. .+.|.+||+||+|+..+.+......+.+.+..+.. ++ +|+.
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~-ISa~ 316 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYL-ISAL 316 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCccee-eehh
Confidence 88999999998543 35566666666666543 68899999999998665554444445555544443 33 9999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q 027824 159 DATNVENAFTEVLTQIYKIVS 179 (218)
Q Consensus 159 ~~~~v~~~~~~i~~~i~~~~~ 179 (218)
++.|++++...+.+.+.+...
T Consensus 317 t~~g~~~L~~~~~~~l~~~~~ 337 (369)
T COG0536 317 TREGLDELLRALAELLEETKA 337 (369)
T ss_pred cccCHHHHHHHHHHHHHHhhh
Confidence 999999999999887777654
No 241
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=1.4e-16 Score=123.75 Aligned_cols=147 Identities=18% Similarity=0.204 Sum_probs=92.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCc------------------ccceeEEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESK------------------STIGVEFATRSLRIDNKVVKAQIWDTAGQERYR 76 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~------------------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 76 (218)
+|+++|++|+|||||+++++......... ...+.......+.. ..+.+.+|||||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW--KGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE--CCEEEEEEECcCHHHHH
Confidence 58999999999999999997533211100 01111112222222 34678999999998888
Q ss_pred hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHcCCeE--E
Q 027824 77 AITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTED-GKAFAEQESLYF--M 153 (218)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~--~ 153 (218)
..+..+++.+|++++|+|++++........|. .+. ..++|.++++||+|+... +..+ ..++....+.++ +
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~---~~~~p~iivvNK~D~~~~---~~~~~~~~l~~~~~~~~~~~ 151 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWE-FAD---EAGIPRIIFINKMDRERA---DFDKTLAALQEAFGRPVVPL 151 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEECCccCCC---CHHHHHHHHHHHhCCCeEEE
Confidence 88888899999999999999875554333332 232 246899999999998754 2222 333333345443 3
Q ss_pred EEccCCCCCHHHHHHHH
Q 027824 154 ETSALDATNVENAFTEV 170 (218)
Q Consensus 154 ~~Sa~~~~~v~~~~~~i 170 (218)
.+...++.++..+.+.+
T Consensus 152 ~ip~~~~~~~~~~vd~~ 168 (268)
T cd04170 152 QLPIGEGDDFKGVVDLL 168 (268)
T ss_pred EecccCCCceeEEEEcc
Confidence 34455555554444333
No 242
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.69 E-value=5.9e-16 Score=128.51 Aligned_cols=154 Identities=22% Similarity=0.172 Sum_probs=97.8
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCC-------------c------------------ccceeEEEEEEEEEC
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES-------------K------------------STIGVEFATRSLRID 58 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~-------------~------------------~t~~~~~~~~~~~~~ 58 (218)
....++|+++|++++|||||+.+|+........ . ..-+++.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 456799999999999999999999755321110 0 001122223333344
Q ss_pred CeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH
Q 027824 59 NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVST 138 (218)
Q Consensus 59 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 138 (218)
....++.+|||||+..|.......+..+|++++|+|+..+..-.....| ..+.... ..|+|+++||+|+....+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~lg--~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLLG--IKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHhC--CCceEEEEEeeccccchhHHH
Confidence 4456789999999988876666667999999999999865322111111 1222211 247899999999964322212
Q ss_pred HHH----HHHHHHc----CCeEEEEccCCCCCHHHH
Q 027824 139 EDG----KAFAEQE----SLYFMETSALDATNVENA 166 (218)
Q Consensus 139 ~~~----~~~~~~~----~~~~~~~Sa~~~~~v~~~ 166 (218)
++. ..+.... .++++.+||++|.|+++.
T Consensus 181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 222 2223333 367999999999999865
No 243
>PRK00049 elongation factor Tu; Reviewed
Probab=99.68 E-value=1.9e-15 Score=123.22 Aligned_cols=149 Identities=17% Similarity=0.126 Sum_probs=98.0
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCC---C-----------CCcccceeEEEEEEEEECCeEEEEEEEeCCCchh
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFN---L-----------ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~---~-----------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 74 (218)
...+.++|+++|+.++|||||+++|++.... . ......+.+.......+.....++.++||||+..
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 3456799999999999999999999873110 0 0011234444444445544556789999999988
Q ss_pred hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCccc---CHHHHHHHHHHc--
Q 027824 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRHLVAV---STEDGKAFAEQE-- 148 (218)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~~~-- 148 (218)
|.......+..+|++++|+|+..+..-+ ...++..+.. .++|.+ +++||+|+....+. ...+.+.+....
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 8777777788999999999998753322 2233333333 457875 68999999642221 112344444443
Q ss_pred ---CCeEEEEccCCCC
Q 027824 149 ---SLYFMETSALDAT 161 (218)
Q Consensus 149 ---~~~~~~~Sa~~~~ 161 (218)
+++++.+||.++.
T Consensus 164 ~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 164 PGDDTPIIRGSALKAL 179 (396)
T ss_pred CccCCcEEEeeccccc
Confidence 4689999999875
No 244
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=7.2e-16 Score=124.93 Aligned_cols=162 Identities=20% Similarity=0.229 Sum_probs=118.9
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCC---------------CCcccceeEEEEEEEE-ECCeEEEEEEEeCCCc
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL---------------ESKSTIGVEFATRSLR-IDNKVVKAQIWDTAGQ 72 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~---------------~~~~t~~~~~~~~~~~-~~~~~~~~~i~D~~G~ 72 (218)
|.++.-++.++.+...|||||..+|+...-.. +....+++.-....+. .++..+.++++||||+
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 56788999999999999999999987543211 1112222222222222 2356689999999999
Q ss_pred hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHcCCe
Q 027824 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV-STEDGKAFAEQESLY 151 (218)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~ 151 (218)
.+|..-....+.-++++|+|+|++.+-.-+.+..++..+. .+..+|.|+||+|++..+.- ...+..++......+
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~ 211 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAE 211 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccc
Confidence 9999888888889999999999998866666666666665 46679999999999874331 122333334334567
Q ss_pred EEEEccCCCCCHHHHHHHHHHHH
Q 027824 152 FMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 152 ~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
.+.+||++|.+++++|+.|++.+
T Consensus 212 ~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 212 VIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred eEEEEeccCccHHHHHHHHHhhC
Confidence 99999999999999999999876
No 245
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.68 E-value=2.2e-15 Score=124.13 Aligned_cols=151 Identities=14% Similarity=0.150 Sum_probs=102.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCC---------------------------C--CCcccceeEEEEEEEEECCeE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFN---------------------------L--ESKSTIGVEFATRSLRIDNKV 61 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~---------------------------~--~~~~t~~~~~~~~~~~~~~~~ 61 (218)
.+.++|+++|+.++|||||+.+|+..... . ......+++.......+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 44589999999999999999988642210 0 000122334444444555666
Q ss_pred EEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhH-------HHHHHHHHHHHhhcCCCC-cEEEEEeCCCCCCC
Q 027824 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATF-------QNVGRWLRELREHTDPNI-IVMLIGNKTDLRHL 133 (218)
Q Consensus 62 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~i~~~~~~~~-p~ivv~nK~Dl~~~ 133 (218)
..+.++|+||+.+|.......+..+|++|+|+|+++.. | ......+..+.. .++ ++|+++||+|+...
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATTP 160 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCch
Confidence 78999999999999998888999999999999998741 2 123332232322 455 47889999998621
Q ss_pred --ccc----CHHHHHHHHHHcC-----CeEEEEccCCCCCHHH
Q 027824 134 --VAV----STEDGKAFAEQES-----LYFMETSALDATNVEN 165 (218)
Q Consensus 134 --~~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 165 (218)
.+. ..++++.++...+ ++|+++||.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 111 1334566666655 6799999999999854
No 246
>PRK13351 elongation factor G; Reviewed
Probab=99.68 E-value=9.1e-16 Score=133.34 Aligned_cols=120 Identities=17% Similarity=0.182 Sum_probs=84.0
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCC-------------CCc---ccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL-------------ESK---STIGVEFATRSLRIDNKVVKAQIWDTAGQ 72 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~-------------~~~---~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 72 (218)
+.+...+|+++|+.++|||||+++|+...... .+. ...+.+.......+....+.+.+|||||+
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~ 83 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH 83 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence 33467899999999999999999998532100 000 00111222222223334578899999999
Q ss_pred hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132 (218)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 132 (218)
.++...+..+++.+|++|+|+|++++........|. .+.. .++|+++++||+|+..
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh---cCCCEEEEEECCCCCC
Confidence 999888899999999999999999876665544442 2322 4789999999999864
No 247
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.68 E-value=2e-15 Score=118.87 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=56.6
Q ss_pred EEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEE---------------------ECC-eEEEEEEEeCCCc-
Q 027824 16 LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLR---------------------IDN-KVVKAQIWDTAGQ- 72 (218)
Q Consensus 16 i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~G~- 72 (218)
|+++|.|++|||||+++|++........|..+.+....... .++ ..+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999999875433333333333222221 122 3478999999997
Q ss_pred ---hhhhhhhhh---hhcCCcEEEEEEECC
Q 027824 73 ---ERYRAITSA---YYRGAVGALLVYDVT 96 (218)
Q Consensus 73 ---~~~~~~~~~---~~~~~d~~i~v~d~~ 96 (218)
+.+..+... .++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 455555444 489999999999997
No 248
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.66 E-value=2.8e-15 Score=129.02 Aligned_cols=154 Identities=23% Similarity=0.171 Sum_probs=97.6
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCC------------cc-------------------cceeEEEEEEEEE
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES------------KS-------------------TIGVEFATRSLRI 57 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~------------~~-------------------t~~~~~~~~~~~~ 57 (218)
+....++|+++|++++|||||+++|+........ .. ..|++.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 4556689999999999999999999864322110 00 0112222222233
Q ss_pred CCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC
Q 027824 58 DNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVS 137 (218)
Q Consensus 58 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 137 (218)
.....++.++||||++.|.......+..+|++++|+|+..+..-+.... +..+... ...++||++||+|+.+..+..
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~~~~~~--~~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SFIASLL--GIRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HHHHHHh--CCCeEEEEEEecccccchhHH
Confidence 3344578899999999887666667889999999999986532221111 2222222 225788999999996422211
Q ss_pred H----HHHHHHHHHcC---CeEEEEccCCCCCHHH
Q 027824 138 T----EDGKAFAEQES---LYFMETSALDATNVEN 165 (218)
Q Consensus 138 ~----~~~~~~~~~~~---~~~~~~Sa~~~~~v~~ 165 (218)
. .+..++....+ ++++.+||++|.|+++
T Consensus 177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1 12333344444 4699999999999884
No 249
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.66 E-value=6.4e-15 Score=123.47 Aligned_cols=119 Identities=16% Similarity=0.222 Sum_probs=83.3
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcC--cCCCC------------------CcccceeEEEEEEEEECCeEEEEEEEe
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKN--EFNLE------------------SKSTIGVEFATRSLRIDNKVVKAQIWD 68 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~--~~~~~------------------~~~t~~~~~~~~~~~~~~~~~~~~i~D 68 (218)
+.....+|+++|++++|||||+++|+.. ..... .....++++......++...+.+.+||
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 4456789999999999999999998531 11100 001223444444455555668899999
Q ss_pred CCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131 (218)
Q Consensus 69 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 131 (218)
|||+..|.......++.+|++|+|+|+++... .....++..+.. .++|+++++||+|+.
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 99998888766778899999999999987522 122334443332 568999999999984
No 250
>PLN03127 Elongation factor Tu; Provisional
Probab=99.65 E-value=5.8e-15 Score=121.59 Aligned_cols=159 Identities=17% Similarity=0.136 Sum_probs=98.8
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcC------cCCCC--------CcccceeEEEEEEEEECCeEEEEEEEeCCCchhh
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKN------EFNLE--------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY 75 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~------~~~~~--------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 75 (218)
..+.++|+++|+.++|||||+++|.+. ..... .....|++.......+.....++.++||||+..|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 345689999999999999999999632 10000 0112334444444555555567899999999888
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccCH---HHHHHHHHHc---
Q 027824 76 RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAVST---EDGKAFAEQE--- 148 (218)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~--- 148 (218)
.......+..+|++++|+|+.++..-+. .+.+..+.. .++| +|+++||+|+.+..+... .+.+++....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~ 213 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP 213 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 7666666678999999999987532222 222333332 4678 578899999975322111 1223333322
Q ss_pred --CCeEEEEccC---CCCC-------HHHHHHHHHH
Q 027824 149 --SLYFMETSAL---DATN-------VENAFTEVLT 172 (218)
Q Consensus 149 --~~~~~~~Sa~---~~~~-------v~~~~~~i~~ 172 (218)
.++++.+|+. ++.+ +.++++.+..
T Consensus 214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~ 249 (447)
T PLN03127 214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDE 249 (447)
T ss_pred CCcceEEEeccceeecCCCcccccchHHHHHHHHHH
Confidence 3678888876 4444 4555555444
No 251
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.65 E-value=3.4e-15 Score=122.86 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=104.5
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcC---CCCCcccceeEEEEEEE---------------EECC-----------
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEF---NLESKSTIGVEFATRSL---------------RIDN----------- 59 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~---~~~~~~t~~~~~~~~~~---------------~~~~----------- 59 (218)
.....++|.++|+...|||||+..|++-.. ..+.....+.+...... .+..
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 446679999999999999999999986432 11111111111100000 0100
Q ss_pred -----eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 027824 60 -----KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134 (218)
Q Consensus 60 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 134 (218)
....+.++|+||++.|.......+..+|++++|+|+.++.......+.+..+... .-.++|+++||+|+.+..
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l--gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc--CCCcEEEEEecccccCHH
Confidence 0236899999999999877777788999999999998742111122223333222 224689999999996532
Q ss_pred cc--CHHHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824 135 AV--STEDGKAFAEQ---ESLYFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 135 ~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
.. ..++.+++... .+.+++.+||++|.|++.+++.|...+
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 21 12333444333 367899999999999999998887543
No 252
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.64 E-value=8.4e-15 Score=120.78 Aligned_cols=152 Identities=15% Similarity=0.114 Sum_probs=99.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcC--CC---------------------------CCcccceeEEEEEEEEECCeE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEF--NL---------------------------ESKSTIGVEFATRSLRIDNKV 61 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~--~~---------------------------~~~~t~~~~~~~~~~~~~~~~ 61 (218)
.+.++|+++|+.++|||||+.+|+...- .. ......+.+.......+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 4568999999999999999999875211 00 000112334444444455566
Q ss_pred EEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhh---H---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC--
Q 027824 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHAT---F---QNVGRWLRELREHTDPNII-VMLIGNKTDLRH-- 132 (218)
Q Consensus 62 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~-- 132 (218)
..+.|+|+||+.+|.......+..+|++++|+|++.+.. + ....+.+..+.. .++| +|+++||+|...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKTVN 161 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccccch
Confidence 789999999999998888888899999999999987531 1 122222233332 3555 678999999532
Q ss_pred CcccCH----HHHHHHHHHc-----CCeEEEEccCCCCCHHH
Q 027824 133 LVAVST----EDGKAFAEQE-----SLYFMETSALDATNVEN 165 (218)
Q Consensus 133 ~~~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~ 165 (218)
..+... ++++++.... +++++.+|+.+|+|+.+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 111122 2333434332 46799999999999864
No 253
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=6.9e-15 Score=117.60 Aligned_cols=160 Identities=19% Similarity=0.219 Sum_probs=117.6
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCC---------------CCCcccceeEEEEEEEEE---CCeEEEEEEEeCC
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFN---------------LESKSTIGVEFATRSLRI---DNKVVKAQIWDTA 70 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~---------------~~~~~t~~~~~~~~~~~~---~~~~~~~~i~D~~ 70 (218)
+..+.-+..++.+-..|||||..|++..... .+....+++.-....+.+ ++..+.++++|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 4556778899999999999999998754321 122233333333333333 5578999999999
Q ss_pred CchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 027824 71 GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL 150 (218)
Q Consensus 71 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 150 (218)
|+-+|.--....+..+.+.++++|++.+-.-+.+.+.+..+. .+.-+|.|+||+||+..... ....+...-.|+
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adpe--rvk~eIe~~iGi 158 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADPE--RVKQEIEDIIGI 158 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCHH--HHHHHHHHHhCC
Confidence 999887666667778999999999999876677666666665 46679999999999874331 223344444565
Q ss_pred e---EEEEccCCCCCHHHHHHHHHHHH
Q 027824 151 Y---FMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 151 ~---~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
. .+.+||++|.|++++++.|++.+
T Consensus 159 d~~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 159 DASDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred CcchheeEecccCCCHHHHHHHHHhhC
Confidence 4 78999999999999999999876
No 254
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.64 E-value=9.4e-15 Score=111.89 Aligned_cols=158 Identities=19% Similarity=0.159 Sum_probs=111.6
Q ss_pred CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh-------hhhh
Q 027824 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR-------AITS 80 (218)
Q Consensus 8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~ 80 (218)
..+....+++++|.|++|||||++.|++........+.++.+..+..+.+++ .++++.|+||.-+-. ....
T Consensus 58 V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vl 135 (365)
T COG1163 58 VKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVL 135 (365)
T ss_pred EeccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceee
Confidence 3556678999999999999999999999887766667777777777777776 567999999842221 2234
Q ss_pred hhhcCCcEEEEEEECCChhh-HHHHHHHHHHHHhh---------------------------------------------
Q 027824 81 AYYRGAVGALLVYDVTRHAT-FQNVGRWLRELREH--------------------------------------------- 114 (218)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~--------------------------------------------- 114 (218)
...++||++++|+|+....+ .+.+...+....-.
T Consensus 136 sv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~n 215 (365)
T COG1163 136 SVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHN 215 (365)
T ss_pred eeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCccc
Confidence 56799999999999986543 33332222221000
Q ss_pred --------------------cCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824 115 --------------------TDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 115 --------------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
...=+|.++|.||+|+.. .++...+.+.. .++.+||+.+.|++++.+.|...+
T Consensus 216 A~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 216 ADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred ceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 001258899999999855 23344444433 789999999999999988876654
No 255
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.63 E-value=1.8e-14 Score=106.82 Aligned_cols=158 Identities=20% Similarity=0.154 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCc--ccceeEEEEEEEEECCeEEEEEEEeCCCchhhh--------hh---hh
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESK--STIGVEFATRSLRIDNKVVKAQIWDTAGQERYR--------AI---TS 80 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~---~~ 80 (218)
++|+++|.+|+|||||+|.+++........ +..+...........+ ..+.++||||..+.. .+ ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999876543331 1222222222333333 468999999953321 11 11
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccc------CHHHHHHHHHHcCCeE
Q 027824 81 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRHLVAV------STEDGKAFAEQESLYF 152 (218)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~ 152 (218)
....++|++|+|+++.+ .+-+. ...+..+..... .-.++++++|+.|...+..+ .....+.+.+..+-.|
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 22467899999999876 22111 222333333322 22578999999986543211 1134556666666666
Q ss_pred EEEcc-----CCCCCHHHHHHHHHHHHH
Q 027824 153 METSA-----LDATNVENAFTEVLTQIY 175 (218)
Q Consensus 153 ~~~Sa-----~~~~~v~~~~~~i~~~i~ 175 (218)
+..+. ..+.+++++++.|.+.+.
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~ 184 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVK 184 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHH
Confidence 55554 345667777666655443
No 256
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2e-14 Score=116.75 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=111.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 90 (218)
+++.-|-+||+...|||||+..|-+..........++..+.-..+.++.. -.+.|.||||+..|..++..-..-+|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 34677899999999999999999776653332222222232333344422 46899999999999999988888999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc---------CCeEEEEccCCCC
Q 027824 91 LVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE---------SLYFMETSALDAT 161 (218)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 161 (218)
+|+.+.|+--.+. +..|......+.|+||++||+|.++. +.+...+....+ ++.++.+||++|+
T Consensus 230 LVVAadDGVmpQT----~EaIkhAk~A~VpiVvAinKiDkp~a---~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 230 LVVAADDGVMPQT----LEAIKHAKSANVPIVVAINKIDKPGA---NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred EEEEccCCccHhH----HHHHHHHHhcCCCEEEEEeccCCCCC---CHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 9999998643333 34444444478999999999998753 333443333333 2468999999999
Q ss_pred CHHHHHHHHHHHH
Q 027824 162 NVENAFTEVLTQI 174 (218)
Q Consensus 162 ~v~~~~~~i~~~i 174 (218)
|++.+-+.+.-..
T Consensus 303 nl~~L~eaill~A 315 (683)
T KOG1145|consen 303 NLDLLEEAILLLA 315 (683)
T ss_pred ChHHHHHHHHHHH
Confidence 9999887776543
No 257
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.4e-15 Score=122.02 Aligned_cols=168 Identities=20% Similarity=0.218 Sum_probs=110.8
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh-------hh--hh
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY-------RA--IT 79 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~--~~ 79 (218)
..+.-++|+++|+|++|||||+|.|.+....... |..|++.......++-..+++.+.||.|..+. .. ..
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHH
Confidence 3445699999999999999999999998876655 55556666666555555678899999996541 11 12
Q ss_pred hhhhcCCcEEEEEEECC--ChhhHHHHHHHHHHHHhhcC------CCCcEEEEEeCCCCCCC-cccCHHHHHHHHHHc--
Q 027824 80 SAYYRGAVGALLVYDVT--RHATFQNVGRWLRELREHTD------PNIIVMLIGNKTDLRHL-VAVSTEDGKAFAEQE-- 148 (218)
Q Consensus 80 ~~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~i~~~~~------~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~-- 148 (218)
...+..+|++++|+|+. +-++-..+...+........ ...|+|++.||+|+..+ .+....-.. +....
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~-~~~~~~~ 421 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV-YPSAEGR 421 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCcee-ccccccC
Confidence 34567899999999994 33332222233333322211 34789999999999664 222221111 11111
Q ss_pred -CC-eEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 027824 149 -SL-YFMETSALDATNVENAFTEVLTQIYKIV 178 (218)
Q Consensus 149 -~~-~~~~~Sa~~~~~v~~~~~~i~~~i~~~~ 178 (218)
.. ...++|+++++|++.+.+.+.+.+....
T Consensus 422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~ 453 (531)
T KOG1191|consen 422 SVFPIVVEVSCTTKEGCERLSTALLNIVERLV 453 (531)
T ss_pred cccceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence 22 3566999999999999999988776543
No 258
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.62 E-value=2.1e-14 Score=97.46 Aligned_cols=106 Identities=22% Similarity=0.231 Sum_probs=68.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCC-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh---------hhhhhhhhc
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFN-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY---------RAITSAYYR 84 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~ 84 (218)
+|+++|.+|+|||||+|+|++.... ....+..+.......+.+++.. +.++||||.... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6999999999999999999985332 2222222233333455566655 479999994311 111223348
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 027824 85 GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127 (218)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 127 (218)
.+|++++|+|.+++.. +....++..+ . .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l---~-~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILREL---K-NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHH---H-TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHH---h-cCCCEEEEEcC
Confidence 9999999999877422 2223333444 2 67899999998
No 259
>PRK12739 elongation factor G; Reviewed
Probab=99.62 E-value=1.5e-14 Score=125.66 Aligned_cols=117 Identities=18% Similarity=0.131 Sum_probs=81.3
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCC------------------CCcccceeEEEEEEEEECCeEEEEEEEeCCC
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL------------------ESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 71 (218)
.+...+|+++|++++|||||+++|+...... +.....+.+.....+.. ...++.++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KGHRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE--CCEEEEEEcCCC
Confidence 4567899999999999999999997531100 01122233333333333 346789999999
Q ss_pred chhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824 72 QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132 (218)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 132 (218)
+..+...+...++.+|++|+|+|+.++...+... .+..+.. .++|+|+++||+|+..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence 9888887888899999999999998764433322 2222322 5689999999999863
No 260
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.61 E-value=5e-14 Score=114.21 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=58.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEE---------------------C-CeEEEEEEEeCCC
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI---------------------D-NKVVKAQIWDTAG 71 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~G 71 (218)
++|.++|.|++|||||+++|++........+..+.+.......+ + ...+.+.+||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999988765433344433333322221 1 2236789999999
Q ss_pred c----hhhhhhhhhh---hcCCcEEEEEEECC
Q 027824 72 Q----ERYRAITSAY---YRGAVGALLVYDVT 96 (218)
Q Consensus 72 ~----~~~~~~~~~~---~~~~d~~i~v~d~~ 96 (218)
. +....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 3344444445 78999999999996
No 261
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.60 E-value=2.1e-14 Score=124.70 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=83.7
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCC-----CCc-----------ccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL-----ESK-----------STIGVEFATRSLRIDNKVVKAQIWDTAGQ 72 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~-----~~~-----------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 72 (218)
+.+...+|+++|++++|||||+++|+...... ... ...+++.......+.....++.+|||||+
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~ 85 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH 85 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC
Confidence 45567899999999999999999997422111 000 01223333333333334568899999999
Q ss_pred hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027824 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133 (218)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 133 (218)
..+.......++.+|++++|+|+.++...+....| ..+.. .++|+++++||+|+...
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCCEEEEEECCCCCCC
Confidence 88887788889999999999999986554433333 33322 46899999999999753
No 262
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=6.5e-15 Score=101.94 Aligned_cols=153 Identities=17% Similarity=0.262 Sum_probs=112.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 92 (218)
.-|++++|-.++|||||++.|..+.. .++.||.. ..+..+.+.+ .++.-+|.+|+-..+..|..++..+|++++.
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccc-cccCCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 45899999999999999999977665 34445532 2233344444 6789999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHH---HHHc-----------C---CeEEE
Q 027824 93 YDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAF---AEQE-----------S---LYFME 154 (218)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~-----------~---~~~~~ 154 (218)
+|+.|.+-|.+.+..+..+..... ...|+++.+||+|.+.+. ++++.+.. .+.. + +.+|.
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm 172 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM 172 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence 999999999888776666654433 689999999999997744 33333221 1111 1 13677
Q ss_pred EccCCCCCHHHHHHHHHH
Q 027824 155 TSALDATNVENAFTEVLT 172 (218)
Q Consensus 155 ~Sa~~~~~v~~~~~~i~~ 172 (218)
||...+.+-.+.|.|+..
T Consensus 173 csi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 173 CSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred EEEEccCccceeeeehhh
Confidence 888887776666766643
No 263
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=1.7e-14 Score=108.42 Aligned_cols=162 Identities=19% Similarity=0.201 Sum_probs=108.4
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEE-EECCeEEEEEEEeCCCch-------hhhhhhhh
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSL-RIDNKVVKAQIWDTAGQE-------RYRAITSA 81 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~i~D~~G~~-------~~~~~~~~ 81 (218)
....++|+++|..|+|||||||+|+.+...+...-..+.+...... .++++ .+.+||+||.. +++.+...
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~--~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGE--NLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcccc--ceEEecCCCcccchhhhHHHHHHHHH
Confidence 4456899999999999999999999766554443222333322222 23332 47999999944 37777888
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-------ccCHHHHHHHHHH-------
Q 027824 82 YYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV-------AVSTEDGKAFAEQ------- 147 (218)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-------~~~~~~~~~~~~~------- 147 (218)
++...|.++++++..|+.---....|...+. .. .+.++++++|.+|...+- .......+++..+
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~~f~~dVi~-~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDEDFLRDVII-LG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCccccCCHHHHHHHHH-hc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999998753222233333332 22 458899999999985431 1111222222221
Q ss_pred ---cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027824 148 ---ESLYFMETSALDATNVENAFTEVLTQIY 175 (218)
Q Consensus 148 ---~~~~~~~~Sa~~~~~v~~~~~~i~~~i~ 175 (218)
.--+++.++...+-|++++...+++.+-
T Consensus 192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 192 LFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 1246888899999999999999988765
No 264
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.58 E-value=1.9e-14 Score=95.14 Aligned_cols=137 Identities=22% Similarity=0.214 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc----hhhhhhhhhhhcCCcEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ----ERYRAITSAYYRGAVGA 89 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~ 89 (218)
-||+++|..|+|||||.+.+.+... .+..|..+++. +. -.+||||. ..+..........+|++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~-------d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi 68 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFN-------DK----GDIDTPGEYFEHPRWYHALITTLQDADVI 68 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh--hhcccceeecc-------Cc----cccCCchhhhhhhHHHHHHHHHhhcccee
Confidence 3799999999999999999988654 34345444432 11 16799983 23333334456789999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCHHHHHH
Q 027824 90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAFT 168 (218)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~ 168 (218)
++|-+++++++.-. ..+... -..|+|-+++|.|+.++.. .+..++|..+.|+. +|++|+.++.|++++++
T Consensus 69 ~~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLaed~d--I~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 69 IYVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAEDAD--ISLVKRWLREAGAEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred eeeecccCccccCC-----cccccc--cccceEEEEecccccchHh--HHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence 99999999864211 112221 2456999999999987444 45688999998874 99999999999999998
Q ss_pred HHHH
Q 027824 169 EVLT 172 (218)
Q Consensus 169 ~i~~ 172 (218)
.|..
T Consensus 140 ~L~~ 143 (148)
T COG4917 140 YLAS 143 (148)
T ss_pred HHHh
Confidence 8754
No 265
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.58 E-value=1.8e-14 Score=115.85 Aligned_cols=172 Identities=16% Similarity=0.195 Sum_probs=123.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh----hhhh-----hh
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY----RAIT-----SA 81 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~-----~~ 81 (218)
++.-.++|+|.|++|||||++.++.......+.++++.......+ +.....++++||||.-+. +... .+
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~--dykYlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL--DYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh--hhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 445789999999999999999999888777666555444333332 344567899999993211 1111 12
Q ss_pred hhcCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHH---HHHHHHcCCeEEEEc
Q 027824 82 YYRGAVGALLVYDVTR--HATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDG---KAFAEQESLYFMETS 156 (218)
Q Consensus 82 ~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~S 156 (218)
..+--.+|+|+.|++. +.|+..-..++..+.... .+.|.|+|+||+|+-....++++.. ..+...-+++++++|
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 2223345999999985 567777666777776666 6789999999999977666665432 233333568999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhhhhhc
Q 027824 157 ALDATNVENAFTEVLTQIYKIVSKRAVEA 185 (218)
Q Consensus 157 a~~~~~v~~~~~~i~~~i~~~~~~~~~~~ 185 (218)
+.+.+||-++-...++.++.++-++....
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa~RVE~Klks 351 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLAARVEQKLKS 351 (620)
T ss_pred ccchhceeeHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999877665443
No 266
>PRK00007 elongation factor G; Reviewed
Probab=99.58 E-value=7.6e-14 Score=121.19 Aligned_cols=117 Identities=18% Similarity=0.148 Sum_probs=80.3
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCC--C----------------CCcccceeEEEEEEEEECCeEEEEEEEeCC
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFN--L----------------ESKSTIGVEFATRSLRIDNKVVKAQIWDTA 70 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~--~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 70 (218)
+.+...+|+++|++++|||||+++|+...-. . +.....+.+.....+.. ....+.++|||
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~--~~~~~~liDTP 83 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KDHRINIIDTP 83 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE--CCeEEEEEeCC
Confidence 4556789999999999999999999742110 0 01122233332233333 34678999999
Q ss_pred CchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824 71 GQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131 (218)
Q Consensus 71 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 131 (218)
|+.+|.......++.+|++++|+|+..+-..+....|. .+.. .++|.|+++||+|+.
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~---~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADK---YKVPRIAFVNKMDRT 140 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHH---cCCCEEEEEECCCCC
Confidence 99888766677788999999999998765444433332 2322 568899999999985
No 267
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=8.7e-14 Score=109.96 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=105.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCC-----------------------------CCcccceeEEEEEEEEECCeE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNL-----------------------------ESKSTIGVEFATRSLRIDNKV 61 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 61 (218)
.+.++++++|+..+|||||+-+|+...-.. .....-|.++......+....
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 345899999999999999999987642110 011223566666666666667
Q ss_pred EEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhh---H--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 027824 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHAT---F--QNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV 136 (218)
Q Consensus 62 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 136 (218)
+.+.|.|+||+..|-.....-..+||+.|+|+|+.+.+. | .........+.... .-..+||++||+|..+-++.
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEcccccccCHH
Confidence 789999999999998888888899999999999988741 1 11111122222222 23458899999999875444
Q ss_pred CHHHHHH----HHHHc-----CCeEEEEccCCCCCHHHH
Q 027824 137 STEDGKA----FAEQE-----SLYFMETSALDATNVENA 166 (218)
Q Consensus 137 ~~~~~~~----~~~~~-----~~~~~~~Sa~~~~~v~~~ 166 (218)
.++++.. +.+.. +++|+.+|+..|.|+.+-
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 4444332 23332 367999999999988653
No 268
>PRK09866 hypothetical protein; Provisional
Probab=99.55 E-value=4.2e-13 Score=112.14 Aligned_cols=108 Identities=14% Similarity=0.141 Sum_probs=72.5
Q ss_pred EEEEEeCCCchh-----hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC
Q 027824 63 KAQIWDTAGQER-----YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVS 137 (218)
Q Consensus 63 ~~~i~D~~G~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 137 (218)
++.+.||||... ........+..+|+++||+|+....+... ...+..+.... ...|+|+|+||+|+.+.....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccch
Confidence 578999999643 22234457899999999999987533332 12233343322 235999999999986433323
Q ss_pred HHHHHHHHH----HcC---CeEEEEccCCCCCHHHHHHHHHH
Q 027824 138 TEDGKAFAE----QES---LYFMETSALDATNVENAFTEVLT 172 (218)
Q Consensus 138 ~~~~~~~~~----~~~---~~~~~~Sa~~~~~v~~~~~~i~~ 172 (218)
.+...++.. ..+ ..+|.+||+.|.|++++++.|..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 444555432 222 35999999999999999998876
No 269
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.55 E-value=8.3e-15 Score=105.56 Aligned_cols=115 Identities=22% Similarity=0.368 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhhh---hhcCCcEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI-DNKVVKAQIWDTAGQERYRAITSA---YYRGAVGA 89 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d~~ 89 (218)
-.|+++|+.|+|||+|+.+|..+...... .... +. . ...+ ....-.+.++|+||+...+..... +..++.++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~-tS~e-~n-~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTV-TSME-NN-I-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B----SS-EE-E-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCee-cccc-CC-c-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 46999999999999999999998543222 2221 11 1 1111 223346899999999887764443 47889999
Q ss_pred EEEEECCC-hhhHHHHHHHHHHHHhh---cCCCCcEEEEEeCCCCCC
Q 027824 90 LLVYDVTR-HATFQNVGRWLRELREH---TDPNIIVMLIGNKTDLRH 132 (218)
Q Consensus 90 i~v~d~~~-~~s~~~~~~~~~~i~~~---~~~~~p~ivv~nK~Dl~~ 132 (218)
|||+|.+. ...+..+.+++..+... ....+|++|+.||.|+..
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 99999974 44555554444443222 237889999999999855
No 270
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.53 E-value=8.8e-13 Score=101.15 Aligned_cols=163 Identities=17% Similarity=0.313 Sum_probs=119.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC--CeEEEEEEEeCCCchhhhhhhhhhhcCC---
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID--NKVVKAQIWDTAGQERYRAITSAYYRGA--- 86 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~--- 86 (218)
.--+|+|+|..++|||||+.+|-+.. ...+..+..+....++.+ +...++.+|-..|.--...+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 34689999999999999999997754 444566666655555432 2235788999999776666665554332
Q ss_pred -cEEEEEEECCChh-hHHHHHHHHHHHHhh--------------------------------------------------
Q 027824 87 -VGALLVYDVTRHA-TFQNVGRWLRELREH-------------------------------------------------- 114 (218)
Q Consensus 87 -d~~i~v~d~~~~~-s~~~~~~~~~~i~~~-------------------------------------------------- 114 (218)
-.||++.|.+++. -++.+..|...+.++
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 3588899999994 456677777666444
Q ss_pred -----------cCCCCcEEEEEeCCCCC----CCcccC-------HHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824 115 -----------TDPNIIVMLIGNKTDLR----HLVAVS-------TEDGKAFAEQESLYFMETSALDATNVENAFTEVLT 172 (218)
Q Consensus 115 -----------~~~~~p~ivv~nK~Dl~----~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (218)
.+.++|++||.+|+|.. .+.+.. ...++.|+..+|+.+|.+|++...|++-+..+|++
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 11378999999999982 222222 12367888889999999999999999999999999
Q ss_pred HHHHH
Q 027824 173 QIYKI 177 (218)
Q Consensus 173 ~i~~~ 177 (218)
..+..
T Consensus 288 r~yG~ 292 (473)
T KOG3905|consen 288 RSYGF 292 (473)
T ss_pred HhcCc
Confidence 87654
No 271
>PRK12740 elongation factor G; Reviewed
Probab=99.52 E-value=2.6e-13 Score=117.93 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=74.2
Q ss_pred EcCCCCChHHHHHHHhcCcCCCC------------------CcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhh
Q 027824 19 IGDSGVGKSNLLSRFTKNEFNLE------------------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITS 80 (218)
Q Consensus 19 ~G~~~~GKssli~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 80 (218)
+|++++|||||+++|+....... .....++......+.. ..+.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~--~~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW--KGHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE--CCEEEEEEECCCcHHHHHHHH
Confidence 69999999999999964322100 0112222222233333 346789999999998887788
Q ss_pred hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824 81 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131 (218)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 131 (218)
.+++.+|++++|+|+++.........| ..+.. .++|+++++||+|+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 889999999999999987655543333 22322 468999999999985
No 272
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.51 E-value=9.6e-13 Score=108.28 Aligned_cols=164 Identities=18% Similarity=0.362 Sum_probs=117.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEEC--CeEEEEEEEeCCCchhhhhhhhhhhcCC--
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID--NKVVKAQIWDTAGQERYRAITSAYYRGA-- 86 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~-- 86 (218)
...-.|+|+|..++|||||+.+|.+.. .+.++.+.+|....+..+ +....+.+|...|...+..+....+...
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 345789999999999999999987643 344677777766655433 2235689999998777777766555422
Q ss_pred --cEEEEEEECCChhhH-HHHHHHHHHHHhh-------------------------------------------------
Q 027824 87 --VGALLVYDVTRHATF-QNVGRWLRELREH------------------------------------------------- 114 (218)
Q Consensus 87 --d~~i~v~d~~~~~s~-~~~~~~~~~i~~~------------------------------------------------- 114 (218)
-.+|+|+|.+.|..+ +.+..|+..+..+
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 358999999998654 4566666555433
Q ss_pred -------------cCCCCcEEEEEeCCCCCC----Cccc-------CHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 027824 115 -------------TDPNIIVMLIGNKTDLRH----LVAV-------STEDGKAFAEQESLYFMETSALDATNVENAFTEV 170 (218)
Q Consensus 115 -------------~~~~~p~ivv~nK~Dl~~----~~~~-------~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (218)
.+.++|++||.+|+|... +... -..-+|.++..+|+.+|.||++...+++-++.+|
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 012589999999999732 1111 1122677788899999999999999999999999
Q ss_pred HHHHHHH
Q 027824 171 LTQIYKI 177 (218)
Q Consensus 171 ~~~i~~~ 177 (218)
.+.++..
T Consensus 260 ~h~l~~~ 266 (472)
T PF05783_consen 260 LHRLYGF 266 (472)
T ss_pred HHHhccC
Confidence 8888664
No 273
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.51 E-value=3.7e-13 Score=92.16 Aligned_cols=114 Identities=31% Similarity=0.374 Sum_probs=85.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCc-ccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 92 (218)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998877754443 3333 333345567788999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 027824 93 YDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVE 164 (218)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 164 (218)
|+..+..+++.+ |...+....+.+.|.++++||.|+.+..++..++ +..++++|++++.++.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~--------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEE--------GLEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHH--------HHHHHHHhCCCcchhh
Confidence 999999998766 8777766666778999999999985433333322 2346677889998874
No 274
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.49 E-value=9.4e-13 Score=102.22 Aligned_cols=127 Identities=14% Similarity=0.091 Sum_probs=73.9
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCC-CcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh-------hh
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLE-SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI-------TS 80 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~ 80 (218)
+..+.++|+++|.+|+||||++|++++...... ...+.+..........+ ...+.+|||||..+.... ..
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHH
Confidence 346689999999999999999999998765322 21222222222222233 367899999996543221 11
Q ss_pred hhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCcccC
Q 027824 81 AYY--RGAVGALLVYDVTRHATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRHLVAVS 137 (218)
Q Consensus 81 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~ 137 (218)
.++ ...|++|||..++.....+.-...+..+....+ .-.+.||++|+.|...+...+
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence 122 268999999765532111111222333333222 234689999999976443343
No 275
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.49 E-value=1.9e-13 Score=119.15 Aligned_cols=119 Identities=16% Similarity=0.147 Sum_probs=82.4
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCc---------------CCCC---CcccceeEEEEEEEEECCeEEEEEEEeCCC
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNE---------------FNLE---SKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~---------------~~~~---~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 71 (218)
.+...+|+++|+.++|||||+++|+... +... +..|.........+.+++..+.+.+|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 3456899999999999999999997531 1110 111222222222334566778999999999
Q ss_pred chhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824 72 QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132 (218)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 132 (218)
+..|.......++.+|++|+|+|+.++...+....|.. +. ..+.|.++++||+|...
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~---~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-AL---KENVKPVLFINKVDRLI 152 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HH---HcCCCEEEEEEChhccc
Confidence 99988888888999999999999987533333222322 22 24578899999999853
No 276
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.47 E-value=2.6e-13 Score=103.67 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=78.7
Q ss_pred hhhhhhhhhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe
Q 027824 73 ERYRAITSAYYRGAVGALLVYDVTRHA-TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY 151 (218)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 151 (218)
+++..+.+.+++++|++++|||+.++. +++.+..|+..+.. .++|+++|+||+||.++..+..+.+..+ ...+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 566777888999999999999999887 89999999887654 5789999999999976555443444444 357889
Q ss_pred EEEEccCCCCCHHHHHHHHHH
Q 027824 152 FMETSALDATNVENAFTEVLT 172 (218)
Q Consensus 152 ~~~~Sa~~~~~v~~~~~~i~~ 172 (218)
++++||+++.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999988753
No 277
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.47 E-value=1.2e-12 Score=101.50 Aligned_cols=153 Identities=25% Similarity=0.229 Sum_probs=106.5
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCC-------------------------------CCcccceeEEEEEEEEEC
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL-------------------------------ESKSTIGVEFATRSLRID 58 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~ 58 (218)
....+|++.+|+..-||||||-||+...-.. +.....|+++......+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 4567999999999999999999997753100 011224555555555555
Q ss_pred CeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH
Q 027824 59 NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVST 138 (218)
Q Consensus 59 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 138 (218)
...-+|.|-||||++.|......-..-+|+.|+++|+-.+- +++.+. ...+.... .-..+++++||+||.+-.+..+
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrR-Hs~I~sLL-GIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRR-HSFIASLL-GIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHH-HHHHHHHh-CCcEEEEEEeeecccccCHHHH
Confidence 56668999999999999988877778899999999995432 111111 22222222 2346888999999988766555
Q ss_pred HHH----HHHHHHcCC---eEEEEccCCCCCHHH
Q 027824 139 EDG----KAFAEQESL---YFMETSALDATNVEN 165 (218)
Q Consensus 139 ~~~----~~~~~~~~~---~~~~~Sa~~~~~v~~ 165 (218)
+++ ..|+.++++ .++.+||..|+||-.
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 554 455666665 589999999998854
No 278
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=7.8e-13 Score=95.62 Aligned_cols=114 Identities=20% Similarity=0.282 Sum_probs=78.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhc---CCcEE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYR---GAVGA 89 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~ 89 (218)
.-.|+++|..+||||+|+-+|..+.+.... ...........+.... +.+.|.||+++.+.-...+++ ++-++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 357999999999999999999887442211 1122222333333332 799999999988877777776 78999
Q ss_pred EEEEECCC-hhhHHHHHH-HHHHHHhh--cCCCCcEEEEEeCCCCC
Q 027824 90 LLVYDVTR-HATFQNVGR-WLRELREH--TDPNIIVMLIGNKTDLR 131 (218)
Q Consensus 90 i~v~d~~~-~~s~~~~~~-~~~~i~~~--~~~~~p~ivv~nK~Dl~ 131 (218)
+||+|... ......+.+ ++..+... ....+|++++.||.|+.
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 99999863 223344434 34444333 24788999999999995
No 279
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.47 E-value=1.6e-12 Score=96.28 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=64.6
Q ss_pred EEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 027824 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDG 141 (218)
Q Consensus 62 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 141 (218)
....++++.|........+. -++.+|.|+|+.+.++... .+...+. ..-++++||+|+........+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence 34567777774222222221 1577999999987665322 1112221 12389999999975323333444
Q ss_pred HHHHHH--cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824 142 KAFAEQ--ESLYFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 142 ~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
.+.++. .+++++++|+++|+|++++|++|.+.+
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455554 467899999999999999999998654
No 280
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.46 E-value=1.6e-12 Score=99.28 Aligned_cols=122 Identities=18% Similarity=0.208 Sum_probs=73.3
Q ss_pred CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCC-cccceeEEEEEEEEECCeEEEEEEEeCCCchhhh--h-h-----
Q 027824 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES-KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR--A-I----- 78 (218)
Q Consensus 8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~-~----- 78 (218)
++.+..++|+|+|.+|+|||||+|.|++....... ....+..........++ ..+.+|||||..+.. . .
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~ 103 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKIL 103 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHH
Confidence 35667899999999999999999999997653322 12222222222233333 568999999964331 1 1
Q ss_pred --hhhhh--cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCC
Q 027824 79 --TSAYY--RGAVGALLVYDVTRH-ATFQNVGRWLRELREHTD--PNIIVMLIGNKTDLRH 132 (218)
Q Consensus 79 --~~~~~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~ 132 (218)
...++ ...++++||..++.. ..... ...++.+....+ --.++++|.||+|...
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 11233 267888888766642 22221 123333333222 1246999999999854
No 281
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.46 E-value=3.1e-12 Score=113.68 Aligned_cols=145 Identities=19% Similarity=0.172 Sum_probs=92.6
Q ss_pred CChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCe-----------E-----EEEEEEeCCCchhhhhhhhhhhcCCc
Q 027824 24 VGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK-----------V-----VKAQIWDTAGQERYRAITSAYYRGAV 87 (218)
Q Consensus 24 ~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-----------~-----~~~~i~D~~G~~~~~~~~~~~~~~~d 87 (218)
++||||+.++.+......-...++..+.-..+..+.. . -.+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 3599999999887664333233332222222222210 0 12799999999999888887888999
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCH------------HH-HHHH-------
Q 027824 88 GALLVYDVTRH---ATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVST------------ED-GKAF------- 144 (218)
Q Consensus 88 ~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~------------~~-~~~~------- 144 (218)
++++|+|++++ .+++.+ ..+.. .++|+++++||+|+........ +. ..++
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I----~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAI----NILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred EEEEEEECcccCCHhHHHHH----HHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999873 444432 22222 3689999999999854322100 00 0111
Q ss_pred ---HHH---------------cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027824 145 ---AEQ---------------ESLYFMETSALDATNVENAFTEVLTQIY 175 (218)
Q Consensus 145 ---~~~---------------~~~~~~~~Sa~~~~~v~~~~~~i~~~i~ 175 (218)
..+ ..++++.+||++|+|+++++.+|.....
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 011 1457999999999999999987765443
No 282
>PTZ00258 GTP-binding protein; Provisional
Probab=99.44 E-value=5e-12 Score=101.72 Aligned_cols=85 Identities=19% Similarity=0.215 Sum_probs=60.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeE---------------EEEEEEeCCCchhh
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV---------------VKAQIWDTAGQERY 75 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~ 75 (218)
...++|.++|.|++|||||+|.|++........|..+.+.....+.+.+.. .++.++|+||...-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 456899999999999999999998877655555666656555555544322 35899999994311
Q ss_pred ----hhh---hhhhhcCCcEEEEEEEC
Q 027824 76 ----RAI---TSAYYRGAVGALLVYDV 95 (218)
Q Consensus 76 ----~~~---~~~~~~~~d~~i~v~d~ 95 (218)
..+ ....++.+|++++|+|.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeC
Confidence 112 23346789999999997
No 283
>PRK13768 GTPase; Provisional
Probab=99.44 E-value=1.5e-12 Score=100.08 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=69.9
Q ss_pred EEEEEeCCCchhh---hhhhhhhhc---C--CcEEEEEEECCChhhHHHH-H-HHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824 63 KAQIWDTAGQERY---RAITSAYYR---G--AVGALLVYDVTRHATFQNV-G-RWLRELREHTDPNIIVMLIGNKTDLRH 132 (218)
Q Consensus 63 ~~~i~D~~G~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~-~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 132 (218)
.+.+||+||+.+. ...+..+++ . ++++++++|+......... . .|+...... ..+.|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 5789999997654 333333322 2 8999999999754433222 2 223222222 25799999999999865
Q ss_pred CcccCH--HHHH------------------------HHHHHcC--CeEEEEccCCCCCHHHHHHHHHHHH
Q 027824 133 LVAVST--EDGK------------------------AFAEQES--LYFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 133 ~~~~~~--~~~~------------------------~~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
..+... .... +.....+ .+++.+|+++++|+++++++|.+.+
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 432210 0000 1122223 5789999999999999999997765
No 284
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.44 E-value=2.2e-12 Score=96.90 Aligned_cols=166 Identities=18% Similarity=0.230 Sum_probs=98.3
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcc-cceeEEEEE------EE------EE-------------------
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKS-TIGVEFATR------SL------RI------------------- 57 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~-t~~~~~~~~------~~------~~------------------- 57 (218)
.+.+.-|+++|..|+|||||++||..........+ .+..+.... .+ .+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 45568899999999999999999876433222111 000000000 00 00
Q ss_pred ----------------CCeEEEEEEEeCCCch------hhhhhhhhhhcCCc--EEEEEEECCC---hhhHHHHHHHHHH
Q 027824 58 ----------------DNKVVKAQIWDTAGQE------RYRAITSAYYRGAV--GALLVYDVTR---HATFQNVGRWLRE 110 (218)
Q Consensus 58 ----------------~~~~~~~~i~D~~G~~------~~~~~~~~~~~~~d--~~i~v~d~~~---~~s~~~~~~~~~~ 110 (218)
....+...++||||+- ..+++....+.... +++|++|... +.+| +..++-.
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tF--MSNMlYA 173 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTF--MSNMLYA 173 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhH--HHHHHHH
Confidence 1233468899999963 22334444444443 4555666432 3333 3444555
Q ss_pred HHhhcCCCCcEEEEEeCCCCCCCcc-----cCHHHHHHHHHH---------------------cCCeEEEEccCCCCCHH
Q 027824 111 LREHTDPNIIVMLIGNKTDLRHLVA-----VSTEDGKAFAEQ---------------------ESLYFMETSALDATNVE 164 (218)
Q Consensus 111 i~~~~~~~~p~ivv~nK~Dl~~~~~-----~~~~~~~~~~~~---------------------~~~~~~~~Sa~~~~~v~ 164 (218)
.........|+|++.||.|+.+... .+++..++...+ .++..+-||+.+|.|++
T Consensus 174 cSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d 253 (366)
T KOG1532|consen 174 CSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD 253 (366)
T ss_pred HHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence 5555557899999999999965311 112222211111 25678899999999999
Q ss_pred HHHHHHHHHHHHH
Q 027824 165 NAFTEVLTQIYKI 177 (218)
Q Consensus 165 ~~~~~i~~~i~~~ 177 (218)
++|..+-..+.+.
T Consensus 254 df~~av~~~vdEy 266 (366)
T KOG1532|consen 254 DFFTAVDESVDEY 266 (366)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877665
No 285
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=2.6e-13 Score=99.28 Aligned_cols=147 Identities=19% Similarity=0.270 Sum_probs=97.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCC-CcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh-----hhhhhcCC
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLE-SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI-----TSAYYRGA 86 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----~~~~~~~~ 86 (218)
.-||+++|.+|+||||+-..++.+..... ..++.++++.-....+-|. ..+.+||++|++.+... ....++++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 46899999999999999877776553222 2244445554444444433 56899999999865432 34578899
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCC--cccCHHH----HHHHHHHcCCeEEEEccC
Q 027824 87 VGALLVYDVTRHATFQNVGRWLRELREHT--DPNIIVMLIGNKTDLRHL--VAVSTED----GKAFAEQESLYFMETSAL 158 (218)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~--~~~~~~~----~~~~~~~~~~~~~~~Sa~ 158 (218)
+++|+|||+...+-..++..+...++... .+...+++..+|.|+... ++....+ .+.+....++.++.+|..
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW 162 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence 99999999998866555555544443332 267788999999999643 2222222 233333456778888877
Q ss_pred CC
Q 027824 159 DA 160 (218)
Q Consensus 159 ~~ 160 (218)
+.
T Consensus 163 De 164 (295)
T KOG3886|consen 163 DE 164 (295)
T ss_pred hH
Confidence 63
No 286
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.43 E-value=2.8e-12 Score=96.13 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCc--ccceeEEEEEEEEECCeEEEEEEEeCCCchhh-------hh-hh---h
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESK--STIGVEFATRSLRIDNKVVKAQIWDTAGQERY-------RA-IT---S 80 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~-~~---~ 80 (218)
++|+|+|..|+||||++|.+++........ ...+..........++ ..+.|+||||..+. .. +. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999987654432 2222223333345566 45799999993211 11 11 1
Q ss_pred hhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccC-------HHHHHHHHHHcCCe
Q 027824 81 AYYRGAVGALLVYDVTRHATFQ--NVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVS-------TEDGKAFAEQESLY 151 (218)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~ 151 (218)
....+.+++|||+.+. +-+-. .+..++..+.... .-..++||.|..|...+..+. ....+++....+-.
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 2345789999999998 32222 1222233322111 123578888888865543321 12245566667777
Q ss_pred EEEEccC------CCCCHHHHHHHHHHHH
Q 027824 152 FMETSAL------DATNVENAFTEVLTQI 174 (218)
Q Consensus 152 ~~~~Sa~------~~~~v~~~~~~i~~~i 174 (218)
|...+.+ ....+.++|..+-+.+
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv 185 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMV 185 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHH
Confidence 7777666 2234555555444433
No 287
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.42 E-value=1e-11 Score=98.52 Aligned_cols=119 Identities=20% Similarity=0.224 Sum_probs=84.2
Q ss_pred eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 027824 60 KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----------ATFQNVGRWLRELREHTD-PNIIVMLIGNKT 128 (218)
Q Consensus 60 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~ 128 (218)
..+.+.+||++|+...+..|..++.+++++|||+|+++- ..+......+..+..... .+.|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 356789999999999999999999999999999999873 223333333333332222 678999999999
Q ss_pred CCCCC----------------cccCHHHHHHHHHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHHHHH
Q 027824 129 DLRHL----------------VAVSTEDGKAFAEQ----------ESLYFMETSALDATNVENAFTEVLTQIYKIV 178 (218)
Q Consensus 129 Dl~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~i~~~i~~~~ 178 (218)
|+-.+ ..-+.+.+..+... ..+....++|.+..++..+|+.+.+.++...
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 97311 12244455544333 1344677899999999999999988877654
No 288
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.4e-12 Score=99.83 Aligned_cols=163 Identities=19% Similarity=0.148 Sum_probs=109.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCc---CCCCCcccceeEEEEEEE--------------------EE----CCeEEE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNE---FNLESKSTIGVEFATRSL--------------------RI----DNKVVK 63 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~--------------------~~----~~~~~~ 63 (218)
+..++|.++|+...|||||...|.+-- ++++.....++....... .. ..-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 677999999999999999999987632 111111111111100000 00 011236
Q ss_pred EEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc--ccCHHHH
Q 027824 64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV--AVSTEDG 141 (218)
Q Consensus 64 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~ 141 (218)
+.|.|+||++-..+....-..-.|+.++|++++.+..-.+.++.+..+.... -..+|++-||+|+.... ..+++++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 8999999999887766555566799999999997644333444344444433 24489999999996532 2355667
Q ss_pred HHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027824 142 KAFAEQ---ESLYFMETSALDATNVENAFTEVLTQIY 175 (218)
Q Consensus 142 ~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~i~ 175 (218)
++|.+. .+++++.+||..+.|++.+++.|.+.+-
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 777665 5789999999999999999998887663
No 289
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.40 E-value=3.6e-12 Score=102.07 Aligned_cols=159 Identities=14% Similarity=0.180 Sum_probs=112.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCC--------------CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhh
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFN--------------LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRA 77 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 77 (218)
..-+|+++.+...|||||++.|+.+.-. ......-|+++-.+...+....+.+.|.||||+.+|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 4568999999999999999999876421 11113446677666666777778999999999999999
Q ss_pred hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHH-------cC
Q 027824 78 ITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV-STEDGKAFAEQ-------ES 149 (218)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~-------~~ 149 (218)
-....+.=+|++++++|+.++.-.+ .+..++. ....+.+.|||+||+|.+..+.. ..++...+... ++
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkK---Al~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQ-TRFVLKK---ALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCc-hhhhHHH---HHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 8888899999999999998753222 2222222 22356778999999999775331 11223333332 56
Q ss_pred CeEEEEccCCC----------CCHHHHHHHHHHHH
Q 027824 150 LYFMETSALDA----------TNVENAFTEVLTQI 174 (218)
Q Consensus 150 ~~~~~~Sa~~~----------~~v~~~~~~i~~~i 174 (218)
++++..|+..| .++..+|+.|++.+
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 78888888764 45677787777755
No 290
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.39 E-value=3.3e-11 Score=96.02 Aligned_cols=83 Identities=19% Similarity=0.176 Sum_probs=58.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeE---------------EEEEEEeCCCchh----
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV---------------VKAQIWDTAGQER---- 74 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~---- 74 (218)
++|.++|.|++|||||+|++++........|..+.+.....+.+.+.. .++.+.|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999987544444555555555455444321 2589999999432
Q ss_pred hhhhh---hhhhcCCcEEEEEEECC
Q 027824 75 YRAIT---SAYYRGAVGALLVYDVT 96 (218)
Q Consensus 75 ~~~~~---~~~~~~~d~~i~v~d~~ 96 (218)
...+. ...++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11222 23467999999999983
No 291
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.37 E-value=8.3e-12 Score=109.20 Aligned_cols=118 Identities=18% Similarity=0.159 Sum_probs=79.8
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCC----------------cccceeEEEEE--EEEECCeEEEEEEEeCCC
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES----------------KSTIGVEFATR--SLRIDNKVVKAQIWDTAG 71 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~----------------~~t~~~~~~~~--~~~~~~~~~~~~i~D~~G 71 (218)
.++..+|+++|+.++|||||+.+|+........ ....+++.... .+..++..+.+.++||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 456678999999999999999999753211100 00111111111 122344567899999999
Q ss_pred chhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824 72 QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131 (218)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 131 (218)
+.+|.......++.+|++|+|+|+..+...+....|.... . .+.|.|+++||+|..
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~-~---~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQAL-R---ERVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHH-H---cCCCeEEEEECchhh
Confidence 9998887888889999999999998764433333343322 2 346789999999975
No 292
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.37 E-value=4.9e-12 Score=111.96 Aligned_cols=119 Identities=22% Similarity=0.201 Sum_probs=82.8
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCC----------------CCcccceeEEEEEEEEE--------------C
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL----------------ESKSTIGVEFATRSLRI--------------D 58 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~--------------~ 58 (218)
+.+...+|+++|+.++|||||+++|+...... +.....++......+.. .
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 45567899999999999999999997543210 00011112211112222 1
Q ss_pred CeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824 59 NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131 (218)
Q Consensus 59 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 131 (218)
...+.+.++||||+.+|.......++.+|+.|+|+|+..+-.......|.... ..++|+|+++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~----~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHH----HCCCCEEEEEECCccc
Confidence 23567899999999999888888889999999999999875544433343322 2578999999999986
No 293
>PTZ00416 elongation factor 2; Provisional
Probab=99.35 E-value=7.7e-12 Score=110.58 Aligned_cols=118 Identities=21% Similarity=0.209 Sum_probs=80.3
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCC----------------CcccceeEEEEEEEEEC--------CeEEEEE
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLE----------------SKSTIGVEFATRSLRID--------NKVVKAQ 65 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------~~~~~~~ 65 (218)
.+...+|+++|+.++|||||+++|+....... .....++......+... +....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 35567999999999999999999986322110 00111111111122222 2256789
Q ss_pred EEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131 (218)
Q Consensus 66 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 131 (218)
++||||+.+|.......++.+|++|+|+|+.++-..+...-| ..+.. .+.|+|+++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---cCCCEEEEEEChhhh
Confidence 999999999888788889999999999999886444433333 33322 468999999999986
No 294
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.35 E-value=3.4e-11 Score=98.90 Aligned_cols=166 Identities=18% Similarity=0.230 Sum_probs=122.9
Q ss_pred CCCCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhc
Q 027824 5 KPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYR 84 (218)
Q Consensus 5 ~~~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 84 (218)
++.......++..++|+.++|||.|++.++++.+...+..+....+....+...+..-.+.+-|.+-. ....+...- .
T Consensus 417 ~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~ 494 (625)
T KOG1707|consen 417 KKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-A 494 (625)
T ss_pred ccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-c
Confidence 44566677899999999999999999999999888766666666666666666666667788888754 333222222 6
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEEccCCCCCH
Q 027824 85 GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNV 163 (218)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v 163 (218)
.+|++.++||.+++.+|..+...+..-... ...|.++|++|+|+.+..+....+-.+++++++++ .+..|.+....
T Consensus 495 ~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s- 571 (625)
T KOG1707|consen 495 ACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS- 571 (625)
T ss_pred eeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-
Confidence 799999999999999999876655554433 68999999999999775433333347888988885 45667765333
Q ss_pred HHHHHHHHHHHH
Q 027824 164 ENAFTEVLTQIY 175 (218)
Q Consensus 164 ~~~~~~i~~~i~ 175 (218)
.++|..|...+.
T Consensus 572 ~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 572 NELFIKLATMAQ 583 (625)
T ss_pred chHHHHHHHhhh
Confidence 788888877553
No 295
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.33 E-value=2.4e-12 Score=97.74 Aligned_cols=111 Identities=16% Similarity=0.122 Sum_probs=60.1
Q ss_pred EEEEEeCCCchhhhhhhhhhh--------cCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027824 63 KAQIWDTAGQERYRAITSAYY--------RGAVGALLVYDVTRHAT-FQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133 (218)
Q Consensus 63 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 133 (218)
.+.|+|||||-++...+.... ...-++++++|.....+ ...+..++..+......+.|.|.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 578999999987766554433 34557888888764322 222344444444444467999999999999762
Q ss_pred cc-------cC------------HHHHHHHHHH---cC-C-eEEEEccCCCCCHHHHHHHHHHH
Q 027824 134 VA-------VS------------TEDGKAFAEQ---ES-L-YFMETSALDATNVENAFTEVLTQ 173 (218)
Q Consensus 134 ~~-------~~------------~~~~~~~~~~---~~-~-~~~~~Sa~~~~~v~~~~~~i~~~ 173 (218)
.. .+ ....++++.- .+ . .++.+|+.+++++++++..+-+.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 10 00 0001111111 22 3 69999999999999999877554
No 296
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.33 E-value=4.5e-11 Score=90.40 Aligned_cols=139 Identities=17% Similarity=0.140 Sum_probs=82.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 90 (218)
.....|+++|.+|+|||||++.+.+...........|. + .+ ......++.++|+||.- ..+ ....+.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEE
Confidence 44578999999999999999999865221111111111 1 11 11234567899999863 222 23467899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCCCCCcccC---HHHHHH-HHHH--cCCeEEEEccCCCC
Q 027824 91 LVYDVTRHATFQNVGRWLRELREHTDPNIIV-MLIGNKTDLRHLVAVS---TEDGKA-FAEQ--ESLYFMETSALDAT 161 (218)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~Dl~~~~~~~---~~~~~~-~~~~--~~~~~~~~Sa~~~~ 161 (218)
+++|++.+..... ..++..+.. .+.|. ++|+||.|+.++.... ..++++ +..+ .+.+++.+||+++-
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 9999986543322 122333322 35674 5599999986432211 112222 2222 35689999999874
No 297
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.33 E-value=5.1e-12 Score=90.70 Aligned_cols=149 Identities=16% Similarity=0.104 Sum_probs=89.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEE--EECC-eE----------------------------
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSL--RIDN-KV---------------------------- 61 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~--~~~~-~~---------------------------- 61 (218)
.++|.+.|++|||||+|+.+++...........++.+....+- .+.. ..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 5899999999999999999987755433222222222222100 0000 11
Q ss_pred ----EEEEEEeCCCchhhhhhhhhhhcCCc-EEEEEEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCcc
Q 027824 62 ----VKAQIWDTAGQERYRAITSAYYRGAV-GALLVYDVTRHATFQNVGRWLRELRE-HTDPNIIVMLIGNKTDLRHLVA 135 (218)
Q Consensus 62 ----~~~~i~D~~G~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~Dl~~~~~ 135 (218)
+.+.|++..| .-.-.. .+.-.| .-|+|+|++.++.... . ...--..=++|+||.|+.....
T Consensus 93 ~~~~~Dll~iEs~G-NL~~~~---sp~L~d~~~v~VidvteGe~~P~---------K~gP~i~~aDllVInK~DLa~~v~ 159 (202)
T COG0378 93 DFPDLDLLFIESVG-NLVCPF---SPDLGDHLRVVVIDVTEGEDIPR---------KGGPGIFKADLLVINKTDLAPYVG 159 (202)
T ss_pred cCCcCCEEEEecCc-ceeccc---CcchhhceEEEEEECCCCCCCcc---------cCCCceeEeeEEEEehHHhHHHhC
Confidence 2233333333 000000 001122 6777888876642211 1 0000013489999999998888
Q ss_pred cCHHHHHHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824 136 VSTEDGKAFAEQE--SLYFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 136 ~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
.+.+.+.+-+++. +.+++++|+++|+|+++++.++....
T Consensus 160 ~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 160 ADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 8888888888874 57899999999999999999887643
No 298
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.32 E-value=1.2e-11 Score=92.54 Aligned_cols=56 Identities=20% Similarity=0.113 Sum_probs=42.0
Q ss_pred CCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHH
Q 027824 118 NIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE--SLYFMETSALDATNVENAFTEVLTQ 173 (218)
Q Consensus 118 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (218)
..|.++++||.|+........++..+..++. .++++++||+++.|++++|+++.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999754333334455555443 3789999999999999999999764
No 299
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.4e-10 Score=90.01 Aligned_cols=164 Identities=16% Similarity=0.161 Sum_probs=96.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCc----CCCC---CcccceeEEEEEEEEE-------CCeEEEEEEEeCCCchhhhhh
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNE----FNLE---SKSTIGVEFATRSLRI-------DNKVVKAQIWDTAGQERYRAI 78 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~----~~~~---~~~t~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~~~~ 78 (218)
.+++.++|+..+|||+|.+++..-. |+.+ .....+.+.....+.+ .++.+++.+.|+||+......
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 4999999999999999999986432 2222 2222333332222222 345578999999999666554
Q ss_pred hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-cccC-HHHH-HHHHH---H----c
Q 027824 79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL-VAVS-TEDG-KAFAE---Q----E 148 (218)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~-~~~~-~~~~-~~~~~---~----~ 148 (218)
......-.|..++|+|+..+...+..+-+ .+.... -...+||+||+|.-.+ ...+ .++. ++..+ . .
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g 162 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDG 162 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhh--hhhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCC
Confidence 44444556889999999876443332221 111111 1236888888886332 1111 1111 11111 1 2
Q ss_pred CCeEEEEccCCCCCHHHHHHHHHHHHHHHHhh
Q 027824 149 SLYFMETSALDATNVENAFTEVLTQIYKIVSK 180 (218)
Q Consensus 149 ~~~~~~~Sa~~~~~v~~~~~~i~~~i~~~~~~ 180 (218)
+.|++++||++|.--++.+..+.+.+..+..+
T Consensus 163 ~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 163 NSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred CCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 47899999999966666666666655554443
No 300
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.30 E-value=1.9e-11 Score=99.65 Aligned_cols=171 Identities=20% Similarity=0.340 Sum_probs=131.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 90 (218)
-+.+|+.++|..++|||+|+.+++.+.+.....+..+ .+.+++.+++....+.+.|.+|.. ...|...+|++|
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavI 100 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVV 100 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccceE
Confidence 3468999999999999999999999888766544433 456777778887788888988842 234667799999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CCcccCHHHHHHHHHH-cCCeEEEEccCCCCCHHHH
Q 027824 91 LVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLR--HLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENA 166 (218)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~ 166 (218)
|||.+.+..+|+.+..+...+..+.. ..+|+++++++.-.. ..+.+.+..+++++.. ..+.||++.+..|.+++.+
T Consensus 101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rv 180 (749)
T KOG0705|consen 101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERV 180 (749)
T ss_pred EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHH
Confidence 99999999999998877766654443 678899999886553 2345556666666555 5678999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcCCC
Q 027824 167 FTEVLTQIYKIVSKRAVEAGSN 188 (218)
Q Consensus 167 ~~~i~~~i~~~~~~~~~~~~~~ 188 (218)
|+.+...+...+..+-......
T Consensus 181 f~~~~~k~i~~~~~qq~~~~~~ 202 (749)
T KOG0705|consen 181 FQEVAQKIVQLRKYQQLPASSS 202 (749)
T ss_pred HHHHHHHHHHHHhhhhcccccc
Confidence 9999998888866665544433
No 301
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=5.7e-11 Score=97.58 Aligned_cols=157 Identities=21% Similarity=0.219 Sum_probs=108.4
Q ss_pred CCCceeeEEEEEcCCCCChHHHHHHHhcCcC--------------------C---------CCCcccceeEEEEEEEEEC
Q 027824 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEF--------------------N---------LESKSTIGVEFATRSLRID 58 (218)
Q Consensus 8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~--------------------~---------~~~~~t~~~~~~~~~~~~~ 58 (218)
.+....+..+++|+..+|||||.-+++...- . .......|++.......++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 3444678999999999999999998865321 0 1111334667777777777
Q ss_pred CeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChh---hHH---HHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824 59 NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHA---TFQ---NVGRWLRELREHTDPNIIVMLIGNKTDLRH 132 (218)
Q Consensus 59 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 132 (218)
.....+.|+|+||+..|......-...+|+.++|+|++-.+ .|+ .+++....+.... -..+||++||+|+.+
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVS 329 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccC
Confidence 77788999999999999888888888999999999998542 122 2233333333322 345899999999976
Q ss_pred CcccCHHHHH----HHH-HHc-----CCeEEEEccCCCCCHHHH
Q 027824 133 LVAVSTEDGK----AFA-EQE-----SLYFMETSALDATNVENA 166 (218)
Q Consensus 133 ~~~~~~~~~~----~~~-~~~-----~~~~~~~Sa~~~~~v~~~ 166 (218)
=.+-.++++. .|. +.. .+.|+.||+..|+|+-..
T Consensus 330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 4444444433 333 223 357999999999887543
No 302
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.29 E-value=6.3e-11 Score=93.74 Aligned_cols=106 Identities=12% Similarity=0.078 Sum_probs=67.5
Q ss_pred EEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--CH
Q 027824 61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV--ST 138 (218)
Q Consensus 61 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~ 138 (218)
.+.+.|+||+|....... ....+|.++++.+...++.+..+.. .+.. ..-++|+||.|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHH
Confidence 357899999996532222 4567999999987665555544321 1111 123899999998653321 11
Q ss_pred HHHHHHHHH-------cCCeEEEEccCCCCCHHHHHHHHHHHHHHH
Q 027824 139 EDGKAFAEQ-------ESLYFMETSALDATNVENAFTEVLTQIYKI 177 (218)
Q Consensus 139 ~~~~~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~i~~~i~~~ 177 (218)
.+.+..... +..+++.+||.++.|++++++.|.+.+...
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 122222221 235799999999999999999998865433
No 303
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=3.2e-11 Score=101.33 Aligned_cols=164 Identities=21% Similarity=0.228 Sum_probs=107.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccc----eeEEEEEE--------EEECCe----EEEEEEEeCCCchhhh
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTI----GVEFATRS--------LRIDNK----VVKAQIWDTAGQERYR 76 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~----~~~~~~~~--------~~~~~~----~~~~~i~D~~G~~~~~ 76 (218)
..-++++|+..+|||-|+..+.+.........++ |-++++.. +.-++. .--+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 3558999999999999999997754433222222 22222211 000111 1137899999999999
Q ss_pred hhhhhhhcCCcEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC------ccc-----------
Q 027824 77 AITSAYYRGAVGALLVYDVTRH---ATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL------VAV----------- 136 (218)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------~~~----------- 136 (218)
.++......+|..|+|+|+..+ .+++. +..+.. .+.|+||++||+|..=. ..+
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqtiES----i~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v 627 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTIES----INLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV 627 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchhHH----HHHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence 9999999999999999999864 33333 333433 67899999999997211 000
Q ss_pred ------CH-HHHHHHHHH-cC-------------CeEEEEccCCCCCHHHHHHHHHHHHHHHHhhhhh
Q 027824 137 ------ST-EDGKAFAEQ-ES-------------LYFMETSALDATNVENAFTEVLTQIYKIVSKRAV 183 (218)
Q Consensus 137 ------~~-~~~~~~~~~-~~-------------~~~~~~Sa~~~~~v~~~~~~i~~~i~~~~~~~~~ 183 (218)
.. .-..+|+.+ ++ +.++.+||..|+||-+++.+|++.....+.++-.
T Consensus 628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~ 695 (1064)
T KOG1144|consen 628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLA 695 (1064)
T ss_pred HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 00 001222222 11 2367799999999999999999988887766543
No 304
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.28 E-value=1e-10 Score=90.29 Aligned_cols=80 Identities=18% Similarity=0.171 Sum_probs=56.9
Q ss_pred EEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeE---------------EEEEEEeCCCchh----hh
Q 027824 16 LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV---------------VKAQIWDTAGQER----YR 76 (218)
Q Consensus 16 i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~----~~ 76 (218)
|.++|.|++|||||+|++++........+..+.+.....+.+.+.. ..+.++|+||... ..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999987755555666556655555554432 2589999999431 11
Q ss_pred hhh---hhhhcCCcEEEEEEEC
Q 027824 77 AIT---SAYYRGAVGALLVYDV 95 (218)
Q Consensus 77 ~~~---~~~~~~~d~~i~v~d~ 95 (218)
.+. ...++.+|++++|+|+
T Consensus 81 glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeC
Confidence 222 2345789999999987
No 305
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.25 E-value=1.3e-10 Score=90.40 Aligned_cols=139 Identities=18% Similarity=0.288 Sum_probs=75.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCC----------cccceeEEEEEEEEECCeEEEEEEEeCCCchh-------h
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLES----------KSTIGVEFATRSLRIDNKVVKAQIWDTAGQER-------Y 75 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~ 75 (218)
.++|+|+|.+|+|||||+|.|++....... ..+..+......+.-++..+.+.++||||-.. +
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999987543321 12233333344455577788999999999210 1
Q ss_pred hhh-------hhhhh-------------cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 027824 76 RAI-------TSAYY-------------RGAVGALLVYDVTRH-ATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134 (218)
Q Consensus 76 ~~~-------~~~~~-------------~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 134 (218)
..+ ...++ ..+|++||.++.+.. -.-.++ ..++.+. ..+++|.|+.|.|.-...
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLS----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhc----ccccEEeEEecccccCHH
Confidence 000 00011 256899999998752 111221 2344443 456799999999974322
Q ss_pred cc--CHHHHHHHHHHcCCeEEEEc
Q 027824 135 AV--STEDGKAFAEQESLYFMETS 156 (218)
Q Consensus 135 ~~--~~~~~~~~~~~~~~~~~~~S 156 (218)
++ ....+++....+++.+|.-.
T Consensus 159 el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S----
T ss_pred HHHHHHHHHHHHHHHcCceeeccc
Confidence 21 12223444555777766533
No 306
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.23 E-value=4.6e-10 Score=89.84 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=93.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC----cCC------------CCCccc---ceeEEEE-----EEEE-ECCeEEEEE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKN----EFN------------LESKST---IGVEFAT-----RSLR-IDNKVVKAQ 65 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~----~~~------------~~~~~t---~~~~~~~-----~~~~-~~~~~~~~~ 65 (218)
...+.|.++|+.++|||||+++|.+. ... ++..+. .+++... ..+. .++...++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 45689999999999999999999987 322 111111 1122211 2222 245567899
Q ss_pred EEeCCCchhhhhh-----------------------------hhhhhc-CCcEEEEEE-ECC----ChhhH-HHHHHHHH
Q 027824 66 IWDTAGQERYRAI-----------------------------TSAYYR-GAVGALLVY-DVT----RHATF-QNVGRWLR 109 (218)
Q Consensus 66 i~D~~G~~~~~~~-----------------------------~~~~~~-~~d~~i~v~-d~~----~~~s~-~~~~~~~~ 109 (218)
++||+|-+.-..+ ....+. .++..|+|. |.+ .++.+ +.-..|+.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999993211110 223344 788888888 664 12222 22244666
Q ss_pred HHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC--CCCCHHHHHHHHH
Q 027824 110 ELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL--DATNVENAFTEVL 171 (218)
Q Consensus 110 ~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~v~~~~~~i~ 171 (218)
++.. .++|+++++|+.|...+ ...+...++..+++++++.+|+. +.+++..+|..++
T Consensus 175 eLk~---~~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 175 ELKE---LNKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HHHh---cCCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 6655 57999999999994321 13333456666678887776664 4455555554443
No 307
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.23 E-value=1.6e-10 Score=83.40 Aligned_cols=63 Identities=21% Similarity=0.207 Sum_probs=44.7
Q ss_pred EEEEEeCCCchh----hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 027824 63 KAQIWDTAGQER----YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT 128 (218)
Q Consensus 63 ~~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 128 (218)
.+.|+|+||... ...++..+++.+|++|+|.+++...+-.....|.+..... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 478999999642 3356777889999999999999865555555555555433 33489999984
No 308
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.17 E-value=2.2e-09 Score=84.73 Aligned_cols=122 Identities=20% Similarity=0.253 Sum_probs=88.2
Q ss_pred eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChh-------hHHHHHHHHHHHHhhcC----CCCcEEEEEeCC
Q 027824 60 KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHA-------TFQNVGRWLRELREHTD----PNIIVMLIGNKT 128 (218)
Q Consensus 60 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~ 128 (218)
....+.++|.+||...+.-|..++.+++++|||+++++-+ ..+.+.+-+..+....+ .+.++|+++||.
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK 272 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence 3467899999999999999999999999999999998532 33455555555555443 578999999999
Q ss_pred CCCCC--------------cc-cCHHHHHHHHHH--------c--CCeEEEEccCCCCCHHHHHHHHHHHHHHHHhhh
Q 027824 129 DLRHL--------------VA-VSTEDGKAFAEQ--------E--SLYFMETSALDATNVENAFTEVLTQIYKIVSKR 181 (218)
Q Consensus 129 Dl~~~--------------~~-~~~~~~~~~~~~--------~--~~~~~~~Sa~~~~~v~~~~~~i~~~i~~~~~~~ 181 (218)
|+-++ .. -+.+++..+... . .+.+..+.|.+-.+|+.+|..+.+.+.....+.
T Consensus 273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk~ 350 (354)
T KOG0082|consen 273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLKD 350 (354)
T ss_pred HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99321 11 233444433322 1 244677889999999999999998887765443
No 309
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=2.7e-10 Score=97.95 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=89.8
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCC----------------cccceeEEEEEEEEECCe-EEEEEEEeCCCc
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES----------------KSTIGVEFATRSLRIDNK-VVKAQIWDTAGQ 72 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~-~~~~~i~D~~G~ 72 (218)
.+...+|.++|+..+|||||..+++...-..+. ...-|+++....+.+... .+.+.++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 667789999999999999999998653211110 012345555555555555 488999999999
Q ss_pred hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131 (218)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 131 (218)
-+|..-....++-+|+.++|+|+..+-..+.-.-|.+... .++|.|+++||+|..
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~ 141 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRL 141 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECcccc
Confidence 9999988899999999999999998766666555655443 578999999999974
No 310
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.17 E-value=1.2e-10 Score=92.98 Aligned_cols=163 Identities=11% Similarity=0.133 Sum_probs=79.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCc-cc--ceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhh-----hhh
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-ST--IGVEFATRSLRIDNKVVKAQIWDTAGQERYRAIT-----SAY 82 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~-~t--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~~ 82 (218)
...++|+|+|.+|+|||||||.|.+-....... ++ ..++.....+.... .-.+.+||.||.....-.. ..-
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 346899999999999999999996532221111 11 11111111121121 1247899999953221111 223
Q ss_pred hcCCcEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCC-------CCcccCHH----HHHHHHHH---
Q 027824 83 YRGAVGALLVYDVTRHATFQNVGR-WLRELREHTDPNIIVMLIGNKTDLR-------HLVAVSTE----DGKAFAEQ--- 147 (218)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~----~~~~~~~~--- 147 (218)
+..-|.+|++.+-. |..... +...+.. -++|+++|-+|+|.. .++..+.+ ++++.+.+
T Consensus 112 ~~~yD~fiii~s~r----f~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~ 184 (376)
T PF05049_consen 112 FYRYDFFIIISSER----FTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ 184 (376)
T ss_dssp GGG-SEEEEEESSS------HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred ccccCEEEEEeCCC----CchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence 45678777766532 222222 2333433 578899999999961 11222222 23333332
Q ss_pred -cCC---eEEEEccCCC--CCHHHHHHHHHHHHHHHHhhh
Q 027824 148 -ESL---YFMETSALDA--TNVENAFTEVLTQIYKIVSKR 181 (218)
Q Consensus 148 -~~~---~~~~~Sa~~~--~~v~~~~~~i~~~i~~~~~~~ 181 (218)
.++ ++|.+|..+- .++..+.+.|...+-.++...
T Consensus 185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~ 224 (376)
T PF05049_consen 185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHA 224 (376)
T ss_dssp CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHH
T ss_pred HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHH
Confidence 343 5899999854 567788888877776665543
No 311
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=4.9e-10 Score=89.63 Aligned_cols=155 Identities=18% Similarity=0.109 Sum_probs=106.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCC---CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFN---LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 91 (218)
-|...|+...|||||+..+.+..-. +......+++......... +..+.++|.||++++-......+...|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~--d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLE--DGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCC--CCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 4788999999999999999876543 2333444444444444333 3478999999999998888888889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH---cCCeEEEEccCCCCCHHHHHH
Q 027824 92 VYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ---ESLYFMETSALDATNVENAFT 168 (218)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~ 168 (218)
|++.+++-..+..+. +..+... .....++|+||+|..++..+ ++..++.... .++++|.+|+++|.||+++-+
T Consensus 80 vV~~deGl~~qtgEh-L~iLdll--gi~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 80 VVAADEGLMAQTGEH-LLILDLL--GIKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EEeCccCcchhhHHH-HHHHHhc--CCCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 999976533332221 2233222 22336999999999764322 1222333322 356789999999999999999
Q ss_pred HHHHHHH
Q 027824 169 EVLTQIY 175 (218)
Q Consensus 169 ~i~~~i~ 175 (218)
.|.....
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9988764
No 312
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=4.6e-10 Score=85.35 Aligned_cols=166 Identities=16% Similarity=0.144 Sum_probs=107.1
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcC-------------C-CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEF-------------N-LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY 75 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~-------------~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 75 (218)
..+-.+|..+|+...|||||...++.-.. . .......|+++....+.+...+-.+...|+||+.+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 34568999999999999999987643111 0 011134466666666666666667899999999999
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHcCC-
Q 027824 76 RAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAV---STEDGKAFAEQESL- 150 (218)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~- 150 (218)
-.....-..+.|+.|+|++++++.-.+.- +.+....+ -+.| +++++||+|+.++.+. .+.+.+++..++++
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTr-EHiLlarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcch-hhhhhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 88777777889999999999986432221 11111122 4665 5566899999875443 34557788888765
Q ss_pred ----eEEEEccCCC-CCHHHHHHHHHHHHHHHHhh
Q 027824 151 ----YFMETSALDA-TNVENAFTEVLTQIYKIVSK 180 (218)
Q Consensus 151 ----~~~~~Sa~~~-~~v~~~~~~i~~~i~~~~~~ 180 (218)
|++.-||... ++-.. +..-+..+++....
T Consensus 165 gd~~Pii~gSal~ale~~~~-~~~~i~eLm~avd~ 198 (394)
T COG0050 165 GDDTPIIRGSALKALEGDAK-WEAKIEELMDAVDS 198 (394)
T ss_pred CCCcceeechhhhhhcCCcc-hHHHHHHHHHHHHh
Confidence 5777777532 44333 33333344444443
No 313
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.15 E-value=5.6e-10 Score=88.05 Aligned_cols=104 Identities=13% Similarity=0.038 Sum_probs=63.8
Q ss_pred EEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHH
Q 027824 61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTED 140 (218)
Q Consensus 61 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 140 (218)
.+.+.|+||+|..... ...+..+|.++++.....+ +.+......+ .++|.++++||+|+..........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 4577899999853222 2245667888877554433 3333333323 346679999999986533211000
Q ss_pred ------HHHHHH---HcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027824 141 ------GKAFAE---QESLYFMETSALDATNVENAFTEVLTQIY 175 (218)
Q Consensus 141 ------~~~~~~---~~~~~~~~~Sa~~~~~v~~~~~~i~~~i~ 175 (218)
...+.. .+..+++.+||+++.|++++++++.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 011111 12346999999999999999999988643
No 314
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.14 E-value=3e-09 Score=89.83 Aligned_cols=123 Identities=16% Similarity=0.159 Sum_probs=74.4
Q ss_pred CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCC-cccceeEEEEEEEEECCeEEEEEEEeCCCchhhh-------hh-
Q 027824 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLES-KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR-------AI- 78 (218)
Q Consensus 8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~- 78 (218)
.+.+..++|+|+|.+|+||||++|.+++....... ....+..........++ ..+.|+||||..+.. .+
T Consensus 113 ~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeIL 190 (763)
T TIGR00993 113 DPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKIL 190 (763)
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHH
Confidence 34556689999999999999999999997643322 11222222222223333 568999999954321 11
Q ss_pred --hhhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCC
Q 027824 79 --TSAYYR--GAVGALLVYDVTRHATFQNVGRWLRELREHTDP--NIIVMLIGNKTDLRH 132 (218)
Q Consensus 79 --~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~Dl~~ 132 (218)
...++. .+|++|+|..++.......-..++..+....+. -..+|||.|..|...
T Consensus 191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 112333 589999999886432211222445555544442 235799999999754
No 315
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.14 E-value=1.2e-10 Score=89.60 Aligned_cols=158 Identities=18% Similarity=0.134 Sum_probs=107.3
Q ss_pred CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc--h-------hhhhh
Q 027824 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ--E-------RYRAI 78 (218)
Q Consensus 8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~--~-------~~~~~ 78 (218)
.......-|.++|..++|||||++.|+.....+...-..+.+.......+.... .+.+.||-|- + .|.+.
T Consensus 173 r~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~AT 251 (410)
T KOG0410|consen 173 REGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQAT 251 (410)
T ss_pred cccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHH
Confidence 344556789999999999999999999766555444444566655666665544 4789999992 1 22222
Q ss_pred hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcE----EEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEE
Q 027824 79 TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIV----MLIGNKTDLRHLVAVSTEDGKAFAEQESLYFME 154 (218)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~----ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 154 (218)
. .-...+|.++.|.|++.|+.-......+.-+....-+..|. |=|=||+|........+ +++ -+.
T Consensus 252 L-eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E--------~n~--~v~ 320 (410)
T KOG0410|consen 252 L-EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE--------KNL--DVG 320 (410)
T ss_pred H-HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc--------cCC--ccc
Confidence 2 23468999999999999987766666666666655444444 44557777644322211 122 577
Q ss_pred EccCCCCCHHHHHHHHHHHHHHH
Q 027824 155 TSALDATNVENAFTEVLTQIYKI 177 (218)
Q Consensus 155 ~Sa~~~~~v~~~~~~i~~~i~~~ 177 (218)
+|+++|+|++++.+.+-..+...
T Consensus 321 isaltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 321 ISALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred cccccCccHHHHHHHHHHHhhhh
Confidence 89999999999998887766554
No 316
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.13 E-value=1.5e-09 Score=82.22 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=42.9
Q ss_pred EEEEEEeCCCchh-------------hhhhhhhhhc-CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 027824 62 VKAQIWDTAGQER-------------YRAITSAYYR-GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127 (218)
Q Consensus 62 ~~~~i~D~~G~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 127 (218)
..+.++|+||... ...+...|++ ..+.+++|+|+...-.-.....+.+.+ ...+.++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l---d~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV---DPQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH---HHcCCcEEEEEEC
Confidence 3689999999531 1234456777 456888999886532222222222233 3367899999999
Q ss_pred CCCCC
Q 027824 128 TDLRH 132 (218)
Q Consensus 128 ~Dl~~ 132 (218)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99865
No 317
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=9.3e-10 Score=91.83 Aligned_cols=118 Identities=21% Similarity=0.254 Sum_probs=86.9
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCc-----------------ccceeEEEEEEEE---ECCeEEEEEEEe
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-----------------STIGVEFATRSLR---IDNKVVKAQIWD 68 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~-----------------~t~~~~~~~~~~~---~~~~~~~~~i~D 68 (218)
......+|.++|+-.+|||+|+.-|..+..+.-+. ...++.....++. ..++.+-++++|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 34567899999999999999999998765433211 1112222222222 256667899999
Q ss_pred CCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027824 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130 (218)
Q Consensus 69 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 130 (218)
|||+-.|.+-....++.+|++++|+|+.++-.++.- +.+........|+++|+||+|.
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE----r~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE----RIIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH----HHHHHHHhccCcEEEEEehhHH
Confidence 999999999888999999999999999988776652 2333333467899999999996
No 318
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=3.3e-09 Score=83.69 Aligned_cols=84 Identities=18% Similarity=0.223 Sum_probs=61.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECC----------------eEEEEEEEeCCCc----
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDN----------------KVVKAQIWDTAGQ---- 72 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~---- 72 (218)
.+++.++|-|++|||||+|.++.........|..+++.......+.. ....+.++|++|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 37899999999999999999999886655557777776555444311 1246899999983
Q ss_pred hhhhhhhh---hhhcCCcEEEEEEECC
Q 027824 73 ERYRAITS---AYYRGAVGALLVYDVT 96 (218)
Q Consensus 73 ~~~~~~~~---~~~~~~d~~i~v~d~~ 96 (218)
+.-..+-. .-++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 23333333 4468999999999975
No 319
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.07 E-value=2e-10 Score=88.73 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=40.2
Q ss_pred CcEEEEEeCCCCCCCcccCHHHHHHHHHH--cCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824 119 IIVMLIGNKTDLRHLVAVSTEDGKAFAEQ--ESLYFMETSALDATNVENAFTEVLTQ 173 (218)
Q Consensus 119 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (218)
.+-++|+||+|+........+...+..+. .+++++.+|+++++|++++++||..+
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 44599999999965322233344444444 35789999999999999999999763
No 320
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.05 E-value=1.3e-08 Score=75.99 Aligned_cols=90 Identities=24% Similarity=0.175 Sum_probs=67.3
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh-------hhhhhh
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR-------AITSAY 82 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~ 82 (218)
+....+|+++|.|++|||||+..++.-..........+.+.-+..+.+++.. +++.|.||.-+.. ......
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEE
Confidence 3456899999999999999999998766655555666677777778888865 6899999953322 223345
Q ss_pred hcCCcEEEEEEECCChhhH
Q 027824 83 YRGAVGALLVYDVTRHATF 101 (218)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~ 101 (218)
.+.+|.++.|.|++..+.-
T Consensus 137 ArtaDlilMvLDatk~e~q 155 (364)
T KOG1486|consen 137 ARTADLILMVLDATKSEDQ 155 (364)
T ss_pred eecccEEEEEecCCcchhH
Confidence 6789999999999875443
No 321
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=3.2e-09 Score=84.89 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=84.5
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhc--CcC--------------CCCCc----ccceeEEEEEEEEECCeEEEEEEEeC
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTK--NEF--------------NLESK----STIGVEFATRSLRIDNKVVKAQIWDT 69 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~--~~~--------------~~~~~----~t~~~~~~~~~~~~~~~~~~~~i~D~ 69 (218)
....-..+++-+|.+|||||-.+|+- +.. ..+.+ ..-|+.+....+.++.....+.|.||
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT 88 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT 88 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence 34456778999999999999998752 211 00000 22355566666666666778999999
Q ss_pred CCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824 70 AGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132 (218)
Q Consensus 70 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 132 (218)
||+++|..-...-+.-+|..+.|+|+..+-.-+. ++.+.-..-.++|++-++||.|...
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT----~KLfeVcrlR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT----LKLFEVCRLRDIPIFTFINKLDREG 147 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCccHHH----HHHHHHHhhcCCceEEEeecccccc
Confidence 9999887766667778999999999987643333 3333333347899999999999755
No 322
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.04 E-value=2.2e-09 Score=79.18 Aligned_cols=93 Identities=20% Similarity=0.111 Sum_probs=65.9
Q ss_pred hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcC
Q 027824 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFA-----EQES 149 (218)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~ 149 (218)
+...+..+++++|++++|+|+.++.. .|...+... ..+.|+++|+||+|+.... ...+....+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcC
Confidence 57788889999999999999987531 122222222 2568999999999986532 2233344443 2233
Q ss_pred C---eEEEEccCCCCCHHHHHHHHHHHH
Q 027824 150 L---YFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 150 ~---~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
. .++.+||+++.|++++++.|.+.+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3 589999999999999999998765
No 323
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.8e-09 Score=84.57 Aligned_cols=126 Identities=14% Similarity=0.190 Sum_probs=87.4
Q ss_pred CCCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCc-ccceeEEEEEEEEECCeEE----------------------
Q 027824 6 PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEFATRSLRIDNKVV---------------------- 62 (218)
Q Consensus 6 ~~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~---------------------- 62 (218)
.+.+++...-|+++|.-+.||||+|+.|+.+.++.... +..+++++...+.-+...+
T Consensus 51 ~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~ 130 (532)
T KOG1954|consen 51 EDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN 130 (532)
T ss_pred cCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence 46788899999999999999999999999999876554 4444556555554321111
Q ss_pred -----------------EEEEEeCCCch-----------hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhh
Q 027824 63 -----------------KAQIWDTAGQE-----------RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREH 114 (218)
Q Consensus 63 -----------------~~~i~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 114 (218)
++.|.||||.- .|.....=+...+|.+|++||+...+--++....+..+
T Consensus 131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL--- 207 (532)
T KOG1954|consen 131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL--- 207 (532)
T ss_pred HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh---
Confidence 68999999932 23344455678999999999997644333333333333
Q ss_pred cCCCCcEEEEEeCCCCCCCc
Q 027824 115 TDPNIIVMLIGNKTDLRHLV 134 (218)
Q Consensus 115 ~~~~~p~ivv~nK~Dl~~~~ 134 (218)
.++.-.+-||.||.|..+..
T Consensus 208 kG~EdkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 208 KGHEDKIRVVLNKADQVDTQ 227 (532)
T ss_pred hCCcceeEEEeccccccCHH
Confidence 33445578999999986643
No 324
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.8e-09 Score=80.00 Aligned_cols=160 Identities=21% Similarity=0.271 Sum_probs=97.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEE--EEEECCeEEEEEEEeCCCchhhhhh---hhhhhcCCc
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATR--SLRIDNKVVKAQIWDTAGQERYRAI---TSAYYRGAV 87 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~i~D~~G~~~~~~~---~~~~~~~~d 87 (218)
..+|+++|...+||||+-...+.+..+.+.. -.+-..+ .-.+.+.-+.+.+||.||+-.+-.- ....++++.
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTl---flESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g 103 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETL---FLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG 103 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCcee---EeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence 3679999999999999988777665443322 1111111 1112234467899999998655432 345789999
Q ss_pred EEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-CcccCHH-H-----HHHHHHH----cCCeEEE
Q 027824 88 GALLVYDVTRH--ATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH-LVAVSTE-D-----GKAFAEQ----ESLYFME 154 (218)
Q Consensus 88 ~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~-~-----~~~~~~~----~~~~~~~ 154 (218)
++|||+|+.+. +.+.++.......... ++++-+=|.+.|.|-.. +-.+... . ..+++.. ..+.|+.
T Consensus 104 ALifvIDaQddy~eala~L~~~v~raykv-Np~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~L 182 (347)
T KOG3887|consen 104 ALIFVIDAQDDYMEALARLHMTVERAYKV-NPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYL 182 (347)
T ss_pred eEEEEEechHHHHHHHHHHHHHhhheeec-CCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEE
Confidence 99999998763 2333333333333222 27788889999999633 2222110 0 1112221 2345777
Q ss_pred EccCCCCCHHHHHHHHHHHHHHH
Q 027824 155 TSALDATNVENAFTEVLTQIYKI 177 (218)
Q Consensus 155 ~Sa~~~~~v~~~~~~i~~~i~~~ 177 (218)
+|..+ +.+-+.|..+++.+..+
T Consensus 183 TSIyD-HSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 183 TSIYD-HSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred eeecc-hHHHHHHHHHHHHHhhh
Confidence 77765 78888888888877665
No 325
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.02 E-value=6.4e-09 Score=81.64 Aligned_cols=138 Identities=17% Similarity=0.230 Sum_probs=81.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCC----------CcccceeEEEEEEEEECCeEEEEEEEeCCCchhh------
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLE----------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY------ 75 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------ 75 (218)
-.++|+++|+.|.|||||+|.|++...... ..++..+......+.-++-.+.+.++||||--++
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 469999999999999999999998743222 1233334444444555677788999999992111
Q ss_pred --------hhhhhhhh--------------cCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824 76 --------RAITSAYY--------------RGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRH 132 (218)
Q Consensus 76 --------~~~~~~~~--------------~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 132 (218)
......|+ ..+++++|.+..+.- .+..+ ...++.+.. .+-+|.|+.|+|.--
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~lT 176 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK----RVNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc----ccCeeeeeeccccCC
Confidence 11111121 246888888887642 22222 122444443 344889999999732
Q ss_pred Ccc--cCHHHHHHHHHHcCCeEEE
Q 027824 133 LVA--VSTEDGKAFAEQESLYFME 154 (218)
Q Consensus 133 ~~~--~~~~~~~~~~~~~~~~~~~ 154 (218)
..+ ...+.+++....+++++|.
T Consensus 177 ~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 177 DDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeC
Confidence 211 1122234445556666663
No 326
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.02 E-value=1.3e-09 Score=77.84 Aligned_cols=95 Identities=15% Similarity=0.105 Sum_probs=64.6
Q ss_pred hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEE
Q 027824 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFME 154 (218)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 154 (218)
++.+....++++|++|+|+|+.++..... ..+...+. ..+.|+++|+||+|+...... .....+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence 35567778889999999999987643222 11222221 246899999999998542211 1111233445678999
Q ss_pred EccCCCCCHHHHHHHHHHHHH
Q 027824 155 TSALDATNVENAFTEVLTQIY 175 (218)
Q Consensus 155 ~Sa~~~~~v~~~~~~i~~~i~ 175 (218)
+||+++.|++++++.+.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999999877553
No 327
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.01 E-value=2.2e-08 Score=80.19 Aligned_cols=119 Identities=19% Similarity=0.196 Sum_probs=83.6
Q ss_pred EEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCC
Q 027824 61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----------ATFQNVGRWLRELREHT-DPNIIVMLIGNKTD 129 (218)
Q Consensus 61 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D 129 (218)
.+.+.+||.+|+...+..|..++.+++++|||+|+++- ..+......+..+.... -.+.|++|++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 36689999999999999999999999999999999963 22333333333333322 26789999999999
Q ss_pred CCCC---------------cccCHHHHHHHHHH-----c------CCeEEEEccCCCCCHHHHHHHHHHHHHHHHh
Q 027824 130 LRHL---------------VAVSTEDGKAFAEQ-----E------SLYFMETSALDATNVENAFTEVLTQIYKIVS 179 (218)
Q Consensus 130 l~~~---------------~~~~~~~~~~~~~~-----~------~~~~~~~Sa~~~~~v~~~~~~i~~~i~~~~~ 179 (218)
+... ...+.+.+.++... . .+..+.++|.+-.++..+|+.+...+++...
T Consensus 263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l 338 (342)
T smart00275 263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL 338 (342)
T ss_pred hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence 8311 00233444444332 1 2446778899999999999998888776543
No 328
>PRK12289 GTPase RsgA; Reviewed
Probab=99.00 E-value=2.7e-09 Score=85.38 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=66.7
Q ss_pred hhhhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEc
Q 027824 78 ITSAYYRGAVGALLVYDVTRHA-TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETS 156 (218)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (218)
+....+.++|.+++|+|+.++. ....+..|+..+.. .++|+++|+||+|+..+.+. +...+.....+..++.+|
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iS 156 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFIS 156 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence 3344578999999999998775 44456677766633 57899999999999643221 122333346788999999
Q ss_pred cCCCCCHHHHHHHHHH
Q 027824 157 ALDATNVENAFTEVLT 172 (218)
Q Consensus 157 a~~~~~v~~~~~~i~~ 172 (218)
|.++.|++++++.+..
T Consensus 157 A~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 157 VETGIGLEALLEQLRN 172 (352)
T ss_pred cCCCCCHHHHhhhhcc
Confidence 9999999999988864
No 329
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.98 E-value=3.5e-09 Score=82.98 Aligned_cols=88 Identities=13% Similarity=0.019 Sum_probs=68.3
Q ss_pred hhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC
Q 027824 80 SAYYRGAVGALLVYDVTRHA-TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 158 (218)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (218)
...+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+..+.+ ......+....+.+++.+||+
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence 34578999999999999987 78888888887764 4689999999999965421 112233344578899999999
Q ss_pred CCCCHHHHHHHHHH
Q 027824 159 DATNVENAFTEVLT 172 (218)
Q Consensus 159 ~~~~v~~~~~~i~~ 172 (218)
++.|+++++..+..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999887753
No 330
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.97 E-value=9.2e-10 Score=82.96 Aligned_cols=151 Identities=18% Similarity=0.129 Sum_probs=85.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcC-----------CCCCccc---------------ceeEEEEEEEEEC-------
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEF-----------NLESKST---------------IGVEFATRSLRID------- 58 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~-----------~~~~~~t---------------~~~~~~~~~~~~~------- 58 (218)
+.+.|.+.|+||+|||||++.|..... +++...+ .....+.+.+.-.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 468999999999999999998754221 1111111 0112233333221
Q ss_pred -----------CeEEEEEEEeCCC--chhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEE
Q 027824 59 -----------NKVVKAQIWDTAG--QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIG 125 (218)
Q Consensus 59 -----------~~~~~~~i~D~~G--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~ 125 (218)
...+.+.|++|.| |++.. ...-+|.+++|....-++.++.+..-+-++. =|+|+
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di~vV 174 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cEEEE
Confidence 1224567777776 43333 3456899999999987776665444333332 29999
Q ss_pred eCCCCCCCcccCHHHHHHHHHH-------cCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027824 126 NKTDLRHLVAVSTEDGKAFAEQ-------ESLYFMETSALDATNVENAFTEVLTQIYK 176 (218)
Q Consensus 126 nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~i~~~i~~ 176 (218)
||.|.+...... .+.+....- +..+++.|||.++.|++++++.|.+....
T Consensus 175 NKaD~~gA~~~~-~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 175 NKADRPGADRTV-RDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp E--SHHHHHHHH-HHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred eCCChHHHHHHH-HHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 999964422211 122222221 23579999999999999999888774433
No 331
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=2.9e-08 Score=73.66 Aligned_cols=152 Identities=17% Similarity=0.224 Sum_probs=86.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCC---------CcccceeEEEEEEEEECCeEEEEEEEeCCCch----------
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLE---------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE---------- 73 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------- 73 (218)
.++|+|+|.+|.|||||+|+++....... ...|..+......+.-++...++.++||||--
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 58999999999999999999876543221 11222222223333445666789999999921
Q ss_pred --------hhhhh--------hhhhh--cCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCC--C
Q 027824 74 --------RYRAI--------TSAYY--RGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLR--H 132 (218)
Q Consensus 74 --------~~~~~--------~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~--~ 132 (218)
.|... +...+ ..+++.+|.+..+. .++..+ .+.++.+... +-++.|+-|.|-- +
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~v----vNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTEV----VNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhhh----heeeeeEeecccccHH
Confidence 11110 11112 24567777777663 333333 2334444332 3378888899952 2
Q ss_pred CcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 027824 133 LVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTE 169 (218)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 169 (218)
++..-.+.+++-...+++.+|.-.+.+...-+..++.
T Consensus 201 Er~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~ 237 (336)
T KOG1547|consen 201 ERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLND 237 (336)
T ss_pred HHHHHHHHHHHHHHhcCcccccccccccchhHHHHHH
Confidence 2222233345555668888887777665444443433
No 332
>PRK12288 GTPase RsgA; Reviewed
Probab=98.93 E-value=1e-08 Score=82.08 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=67.2
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHcCCeEEEEccCCCC
Q 027824 83 YRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV-STEDGKAFAEQESLYFMETSALDAT 161 (218)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (218)
..++|.+++|+++....++..+..|+..+.. .++|+++|+||+|+..+.+. ...+..+.....+.+++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999888899999999876543 56899999999999653321 1122233345578899999999999
Q ss_pred CHHHHHHHHHH
Q 027824 162 NVENAFTEVLT 172 (218)
Q Consensus 162 ~v~~~~~~i~~ 172 (218)
|++++++.|..
T Consensus 195 GideL~~~L~~ 205 (347)
T PRK12288 195 GLEELEAALTG 205 (347)
T ss_pred CHHHHHHHHhh
Confidence 99999988864
No 333
>PRK00098 GTPase RsgA; Reviewed
Probab=98.91 E-value=6.3e-09 Score=81.95 Aligned_cols=86 Identities=16% Similarity=0.133 Sum_probs=64.6
Q ss_pred hhcCCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027824 82 YYRGAVGALLVYDVTRHATFQN-VGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDA 160 (218)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (218)
...++|.+++|+|+.++..... +..|+..+.. .++|+++|+||+|+.++.+ ......++....+.+++.+||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4589999999999988765444 4667766643 5789999999999964322 122334455567889999999999
Q ss_pred CCHHHHHHHHH
Q 027824 161 TNVENAFTEVL 171 (218)
Q Consensus 161 ~~v~~~~~~i~ 171 (218)
.|++++++.+.
T Consensus 153 ~gi~~L~~~l~ 163 (298)
T PRK00098 153 EGLDELKPLLA 163 (298)
T ss_pred ccHHHHHhhcc
Confidence 99999988763
No 334
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.9e-08 Score=78.54 Aligned_cols=143 Identities=16% Similarity=0.259 Sum_probs=85.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCC---------CcccceeEEEEEEEEECCeEEEEEEEeCCCch-------hhh
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLE---------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE-------RYR 76 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~ 76 (218)
.+.++++|..|.|||||+|.|+...+... ...+..+......+.-++-.+.+.+.||||-- .+.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 48999999999999999999988754332 11333444444444446677889999999921 110
Q ss_pred -------hhhhhhh-----------c--CCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 027824 77 -------AITSAYY-----------R--GAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHLVA 135 (218)
Q Consensus 77 -------~~~~~~~-----------~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 135 (218)
+....|+ . .+++.+|.+..+.. .+..+ ...++.+. ..+.+|.|+-|.|.--..+
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccCCHHH
Confidence 1111121 2 57889999987642 12111 12233333 4566899999999744322
Q ss_pred c--CHHHHHHHHHHcCCeEEEEccCCC
Q 027824 136 V--STEDGKAFAEQESLYFMETSALDA 160 (218)
Q Consensus 136 ~--~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (218)
+ ....+.+....+++++|.-..-..
T Consensus 176 l~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 176 LNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 2 223345556667888776555443
No 335
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.89 E-value=4.5e-08 Score=75.06 Aligned_cols=154 Identities=18% Similarity=0.119 Sum_probs=91.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcC-----------CCCCcccce---------------eEEEEEEEEE--------
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEF-----------NLESKSTIG---------------VEFATRSLRI-------- 57 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~-----------~~~~~~t~~---------------~~~~~~~~~~-------- 57 (218)
+...|.+.|.||+|||||+..|..... ++++..|-| ...+...+..
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 356899999999999999998854321 122211111 1111111111
Q ss_pred ----------CCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 027824 58 ----------DNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNK 127 (218)
Q Consensus 58 ----------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 127 (218)
+...+-+.|++|.|--.... ....-+|.++++.-..-++.++.+..=+-++. =|+|+||
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINK 198 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINK 198 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEec
Confidence 12334577888877322221 23345898999888877777776655444443 2899999
Q ss_pred CCCCCCcccCHHH--HHHHHH----H--cCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027824 128 TDLRHLVAVSTED--GKAFAE----Q--ESLYFMETSALDATNVENAFTEVLTQIYK 176 (218)
Q Consensus 128 ~Dl~~~~~~~~~~--~~~~~~----~--~~~~~~~~Sa~~~~~v~~~~~~i~~~i~~ 176 (218)
.|.......-.+. +.++.. . +.-+++.+||.+|+|++++++.+.+...-
T Consensus 199 aD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 199 ADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred cChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 9964421111110 111111 1 34479999999999999999888775433
No 336
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.88 E-value=6.8e-09 Score=78.50 Aligned_cols=159 Identities=17% Similarity=0.121 Sum_probs=96.1
Q ss_pred CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcc-cceeEEEEEEEEECCeEEEEEEEeCCC----------chhh
Q 027824 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKS-TIGVEFATRSLRIDNKVVKAQIWDTAG----------QERY 75 (218)
Q Consensus 7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~ 75 (218)
+-+.+...+++++|.+++|||||++-+++......... ..+.+.......+.. .+.+.|.|| ..++
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~ 206 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADW 206 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchH
Confidence 34567789999999999999999999987654332222 444444444444443 467999999 1244
Q ss_pred hhhhhhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc------cC-----HHHH
Q 027824 76 RAITSAYYRG---AVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA------VS-----TEDG 141 (218)
Q Consensus 76 ~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~------~~-----~~~~ 141 (218)
..+...|+.+ .--+++.+|++-+-.-.+ ...+......++|+.+|.||+|...... .. ....
T Consensus 207 ~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D----~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l 282 (320)
T KOG2486|consen 207 DKFTKSYLLERENLVRVFLLVDASVPIQPTD----NPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL 282 (320)
T ss_pred hHhHHHHHHhhhhhheeeeeeeccCCCCCCC----hHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence 4455555533 234566666654321111 1222223347899999999999743211 11 1111
Q ss_pred HHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 027824 142 KAFAEQESLYFMETSALDATNVENAFTEVLT 172 (218)
Q Consensus 142 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (218)
-+.......+++.+|+.++.|++.++..|.+
T Consensus 283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cccceeccCCceeeecccccCceeeeeehhh
Confidence 1112223457888999999999998766644
No 337
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.81 E-value=3.5e-08 Score=79.77 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=69.1
Q ss_pred chhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHH----HHHH
Q 027824 72 QERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKA----FAEQ 147 (218)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~ 147 (218)
.+.|..+...+.+.++++++|+|+.+.. ..|...+.... .+.|+++|+||+|+... ....+...+ ++++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 5678888888889999999999997643 22444444433 36799999999998642 233344443 3555
Q ss_pred cCC---eEEEEccCCCCCHHHHHHHHHH
Q 027824 148 ESL---YFMETSALDATNVENAFTEVLT 172 (218)
Q Consensus 148 ~~~---~~~~~Sa~~~~~v~~~~~~i~~ 172 (218)
.++ .++.+||+++.|++++|..|.+
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence 676 4899999999999999998865
No 338
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.79 E-value=1.5e-08 Score=71.07 Aligned_cols=54 Identities=22% Similarity=0.279 Sum_probs=40.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 72 (218)
+++++|.+|+|||||+|++++....... ...+.+.....+.++. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999999987764322 3344455555555554 4689999995
No 339
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=8.1e-08 Score=74.72 Aligned_cols=145 Identities=18% Similarity=0.125 Sum_probs=99.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCc----------C---CCC-CcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNE----------F---NLE-SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR 76 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~----------~---~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 76 (218)
.+-.+|.-+|+...|||||-..++.-. + +.. ....-|+++....+.+......+.-.|+||+.+|.
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 345789999999999999998764311 1 110 11334666667777776666677899999999998
Q ss_pred hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc---ccCHHHHHHHHHHcC----
Q 027824 77 AITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV---AVSTEDGKAFAEQES---- 149 (218)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~---- 149 (218)
.....-..+.|+.|+|+.++|+.-.+ .++.+-...+.. -..+++.+||.|+.++. ++.+-+++++..+++
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQ-TrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd 208 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQ-TREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD 208 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcc-hHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 87777778899999999999964322 233233333322 13377779999998543 344556788888875
Q ss_pred -CeEEEEccC
Q 027824 150 -LYFMETSAL 158 (218)
Q Consensus 150 -~~~~~~Sa~ 158 (218)
+|++.=||.
T Consensus 209 ~~PvI~GSAL 218 (449)
T KOG0460|consen 209 NTPVIRGSAL 218 (449)
T ss_pred CCCeeecchh
Confidence 468887665
No 340
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.77 E-value=1.4e-08 Score=73.49 Aligned_cols=57 Identities=23% Similarity=0.385 Sum_probs=41.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCC
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 71 (218)
...++++++|.|++|||||+|++.+....... +..|++.....+.++. .+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeCC---CEEEEECcC
Confidence 44589999999999999999999987653322 3344555444444443 478999998
No 341
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.73 E-value=4.1e-08 Score=70.14 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=39.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCC
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 71 (218)
..++|+++|.+|+|||||+|++.+....... ++.+.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 3578999999999999999999986653332 3344444444444433 257999998
No 342
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=6e-08 Score=82.34 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=86.2
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcC------------C--CCCcccceeEEEEEEEEECCeEEEEEEEeCCCchh
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEF------------N--LESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQER 74 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~------------~--~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 74 (218)
+....-+|.++.+...|||||...|+.... . .+...+-|++.....+.+-...+.+.++|+||+-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 456678999999999999999998876431 1 12224555666555566656678899999999999
Q ss_pred hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027824 75 YRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130 (218)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 130 (218)
|.+......+-+|+.++.+|+..+-..+...-..+.+. .+...|+|+||+|.
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkidr 136 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhhh
Confidence 99999988999999999999987644433222222222 34567999999993
No 343
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.69 E-value=7.2e-07 Score=70.66 Aligned_cols=158 Identities=16% Similarity=0.104 Sum_probs=94.0
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcc--------------cceeEEEEEEEEEC----------------
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKS--------------TIGVEFATRSLRID---------------- 58 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~--------------t~~~~~~~~~~~~~---------------- 58 (218)
.-+.-+.|.++|+...|||||+-.|..+..+.-.-. ..+-+.....+-++
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 345568999999999999999988766543221110 01111111111111
Q ss_pred -----CeEEEEEEEeCCCchhhhhhh--hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824 59 -----NKVVKAQIWDTAGQERYRAIT--SAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131 (218)
Q Consensus 59 -----~~~~~~~i~D~~G~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 131 (218)
..+--+.+.|+.|++.|-... -.+-...|..++++.++++-+--. ++.+-.+. .-+.|+|+++||+|+.
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~---a~~lPviVvvTK~D~~ 268 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL---AMELPVIVVVTKIDMV 268 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh---hhcCCEEEEEEecccC
Confidence 111247899999999886433 233467999999999998754322 22222222 2578999999999996
Q ss_pred CCcccC--HHHHHHH----------------------HHHc---CCeEEEEccCCCCCHHHHHHHH
Q 027824 132 HLVAVS--TEDGKAF----------------------AEQE---SLYFMETSALDATNVENAFTEV 170 (218)
Q Consensus 132 ~~~~~~--~~~~~~~----------------------~~~~---~~~~~~~Sa~~~~~v~~~~~~i 170 (218)
.+.... .+++..+ +.+. -+|+|.+|+.+|+|.+-+...+
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 542211 1111111 1111 2589999999999977554433
No 344
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.65 E-value=4.4e-07 Score=83.59 Aligned_cols=112 Identities=24% Similarity=0.336 Sum_probs=71.7
Q ss_pred EEEEcCCCCChHHHHHHHhcCcCCCCC----ccc--ceeEEEEEEEEECCeEEEEEEEeCCCc----h----hhhhhhhh
Q 027824 16 LVLIGDSGVGKSNLLSRFTKNEFNLES----KST--IGVEFATRSLRIDNKVVKAQIWDTAGQ----E----RYRAITSA 81 (218)
Q Consensus 16 i~l~G~~~~GKssli~~l~~~~~~~~~----~~t--~~~~~~~~~~~~~~~~~~~~i~D~~G~----~----~~~~~~~~ 81 (218)
.+|+|++|+||||++..- +-.++-.. ..+ .+-+. ...+.+.+.- .++|++|. + .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~a---vliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDEA---VLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCCE---EEEcCCCccccCCCcccccHHHHHH
Confidence 589999999999999876 43442211 011 11111 2333444444 49999992 1 22233444
Q ss_pred hh---------cCCcEEEEEEECCCh-----hh----HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824 82 YY---------RGAVGALLVYDVTRH-----AT----FQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132 (218)
Q Consensus 82 ~~---------~~~d~~i~v~d~~~~-----~s----~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 132 (218)
++ +..+++|+++|+.+- +. -..++..+.++....+...|++|++||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 33 358999999998742 21 13456667777777778999999999999854
No 345
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.64 E-value=8.1e-06 Score=57.28 Aligned_cols=146 Identities=17% Similarity=0.231 Sum_probs=80.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCC-Cc------------------
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTA-GQ------------------ 72 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~-G~------------------ 72 (218)
..+||.+.|+||+||||++.++........+ ...| +...++.-++..+-|.|.|+. |.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kvgG--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY-KVGG--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCc-eeee--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 4589999999999999999988654332211 2222 334445556666667777766 30
Q ss_pred ---hhhh----hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 027824 73 ---ERYR----AITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFA 145 (218)
Q Consensus 73 ---~~~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 145 (218)
+.+. ......++.+|+ +++|---+..+. ...+...+......+.|+|.++.+.+.. ....++-
T Consensus 81 V~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr~-------P~v~~ik 150 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADV--IIIDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSRH-------PLVQRIK 150 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCE--EEEecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccCC-------hHHHHhh
Confidence 1111 112234456774 445654443221 1334555555556788988888876541 1223333
Q ss_pred HHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824 146 EQESLYFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 146 ~~~~~~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
...++.+| .+.+|=+.++..+...+
T Consensus 151 ~~~~v~v~----lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 151 KLGGVYVF----LTPENRNRILNEILSVL 175 (179)
T ss_pred hcCCEEEE----EccchhhHHHHHHHHHh
Confidence 33333443 34444446666666544
No 346
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.6e-08 Score=76.38 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=99.9
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCc---CCCCCcccceeEEEEE--EE-E--------------------------E
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNE---FNLESKSTIGVEFATR--SL-R--------------------------I 57 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~--~~-~--------------------------~ 57 (218)
++-.++|.-+|+...||||++..+.+-. |..+.....++..... .+ . .
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 4457899999999999999999875521 1111111111111000 00 0 0
Q ss_pred ---CC---eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 027824 58 ---DN---KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----ATFQNVGRWLRELREHTDPNIIVMLIGNK 127 (218)
Q Consensus 58 ---~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 127 (218)
.+ -...+.+.|+||++...+....-..-.|+.++.+..+.. .+-+. +..+..+ .-..++++-||
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEH----LaaveiM--~LkhiiilQNK 188 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEH----LAAVEIM--KLKHIIILQNK 188 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhH----HHHHHHh--hhceEEEEech
Confidence 00 012578999999998876655544556777888777643 33333 3333322 12458999999
Q ss_pred CCCCCCccc--CHHHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 027824 128 TDLRHLVAV--STEDGKAFAEQ---ESLYFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 128 ~Dl~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
+|+..+.+. ..++...|... .+++++.+||.-+.|++.+.++|++.+
T Consensus 189 iDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 189 IDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred hhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 999664432 23345555554 578999999999999999999998866
No 347
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=4.6e-07 Score=75.08 Aligned_cols=153 Identities=13% Similarity=0.131 Sum_probs=89.9
Q ss_pred CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCc
Q 027824 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAV 87 (218)
Q Consensus 8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 87 (218)
.+-++++-++|+|+||+||||||+.|..... .+....+ ..+.+ .+.++.-.+.++++|. +... .....+-+|
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~t-k~ti~~i---~GPiT-vvsgK~RRiTflEcp~--Dl~~-miDvaKIaD 135 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFT-KQTIDEI---RGPIT-VVSGKTRRITFLECPS--DLHQ-MIDVAKIAD 135 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHH-Hhhhhcc---CCceE-EeecceeEEEEEeChH--HHHH-HHhHHHhhh
Confidence 3456678899999999999999998876432 1111110 11111 1455667899999993 2222 223456689
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcccCHHHH-----HHHHHH-cCCeEEEEccC-C
Q 027824 88 GALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAVSTEDG-----KAFAEQ-ESLYFMETSAL-D 159 (218)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~-----~~~~~~-~~~~~~~~Sa~-~ 159 (218)
.+++.+|.+-+..++.+. ++..+.. ++.| ++-|+|..|+-......-+.. +-|..- .|+++|.+|.. +
T Consensus 136 LVlLlIdgnfGfEMETmE-FLnil~~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 136 LVLLLIDGNFGFEMETME-FLNILIS---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred eeEEEeccccCceehHHH-HHHHHhh---cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence 999999998765555432 2444444 4445 677899999955322111111 112222 47888888875 4
Q ss_pred CCCHHHHHHHHHH
Q 027824 160 ATNVENAFTEVLT 172 (218)
Q Consensus 160 ~~~v~~~~~~i~~ 172 (218)
|.-.+.-+-.|..
T Consensus 212 GRYpDreilnLsR 224 (1077)
T COG5192 212 GRYPDREILNLSR 224 (1077)
T ss_pred CCCCCHHHHHHHH
Confidence 4444433334444
No 348
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.62 E-value=2.4e-07 Score=66.20 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=55.9
Q ss_pred hhcCCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCC
Q 027824 82 YYRGAVGALLVYDVTRHAT--FQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALD 159 (218)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (218)
.++.+|.+++|+|+.++.. ...+..++ .. ...+.|+|+|+||+|+..+... ......+...+....+.+||+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYL---KK-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHH---Hh-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence 4678999999999988632 22222322 22 2346899999999999543221 1112222222223357799999
Q ss_pred CCCHHHHHHHHHHH
Q 027824 160 ATNVENAFTEVLTQ 173 (218)
Q Consensus 160 ~~~v~~~~~~i~~~ 173 (218)
+.|++++++.+.+.
T Consensus 80 ~~~~~~L~~~l~~~ 93 (157)
T cd01858 80 PFGKGSLIQLLRQF 93 (157)
T ss_pred cccHHHHHHHHHHH
Confidence 99999999888664
No 349
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.62 E-value=1.3e-07 Score=68.50 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=41.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 72 (218)
+..++++++|.+++|||||++++.+..+... ....+++.....+.++ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4457999999999999999999998776322 2333344444444444 34689999994
No 350
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.60 E-value=1.6e-07 Score=66.95 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=40.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCC
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 71 (218)
...+++++|.+++|||||++++.+.... ...++.+.+.....+..+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 4578999999999999999999876532 3335555554433333333 578999998
No 351
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.58 E-value=2e-07 Score=72.82 Aligned_cols=58 Identities=21% Similarity=0.391 Sum_probs=41.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 72 (218)
...++++++|.||+|||||+|+|.+....... ...+.+.....+.++. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence 34689999999999999999999987643332 3334444444555543 4689999996
No 352
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.2e-06 Score=72.46 Aligned_cols=144 Identities=14% Similarity=0.149 Sum_probs=81.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCc-ccceeEE----------------------------------------
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEF---------------------------------------- 50 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~-~t~~~~~---------------------------------------- 50 (218)
.-.||++.|..++||||++|.++....-++.. +++.+-.
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 35799999999999999999988765433221 1100000
Q ss_pred --EEEEEEECCeE-----EEEEEEeCCCch---hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc
Q 027824 51 --ATRSLRIDNKV-----VKAQIWDTAGQE---RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII 120 (218)
Q Consensus 51 --~~~~~~~~~~~-----~~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 120 (218)
.-..+..+... -.+.++|.||.+ +..+-...+...+|++|+|.++.+-.+.... .++..... .+.-
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~---~Kpn 263 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSE---EKPN 263 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhc---cCCc
Confidence 00000001110 136788999954 4445556677899999999999876554442 22222222 2334
Q ss_pred EEEEEeCCCCCCCcccCHHHHHHHHHHc--------CCeEEEEccCC
Q 027824 121 VMLIGNKTDLRHLVAVSTEDGKAFAEQE--------SLYFMETSALD 159 (218)
Q Consensus 121 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~ 159 (218)
++++.||.|.....+.-.+.++....+. .-.+|+||++.
T Consensus 264 iFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 264 IFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred EEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 6667788898654333223333322222 12478888653
No 353
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.57 E-value=2.6e-07 Score=72.48 Aligned_cols=58 Identities=24% Similarity=0.402 Sum_probs=42.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 72 (218)
...++++++|.|++|||||+|+|.+....... ...|++.....+..+. .+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 45689999999999999999999987653322 3444555454555543 4679999995
No 354
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.57 E-value=2.9e-07 Score=73.72 Aligned_cols=83 Identities=17% Similarity=0.018 Sum_probs=60.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcC-CCCCcccceeEEEEEEEEECCeE---------------EEEEEEeCCCchhh--
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEF-NLESKSTIGVEFATRSLRIDNKV---------------VKAQIWDTAGQERY-- 75 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~-- 75 (218)
+++.++|.|++|||||++.+++... .....|..+.+.....+.+.+.. ..+.+.|+||...-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999876 55444555555555555554421 36789999995321
Q ss_pred -----hhhhhhhhcCCcEEEEEEECC
Q 027824 76 -----RAITSAYYRGAVGALLVYDVT 96 (218)
Q Consensus 76 -----~~~~~~~~~~~d~~i~v~d~~ 96 (218)
.......++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 223334578999999999984
No 355
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.57 E-value=4.9e-07 Score=64.44 Aligned_cols=85 Identities=14% Similarity=0.008 Sum_probs=55.5
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824 87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA 166 (218)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (218)
|.+++|+|+.++.+... .++.. ......++|+|+|+||+|+....++. +....+....+..++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~~-~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVLR-KWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHHH-HHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 68999999988755432 22221 11223578999999999995422110 1111222234566899999999999999
Q ss_pred HHHHHHHHH
Q 027824 167 FTEVLTQIY 175 (218)
Q Consensus 167 ~~~i~~~i~ 175 (218)
++.+.+...
T Consensus 77 ~~~i~~~~~ 85 (155)
T cd01849 77 ESAFTKQTN 85 (155)
T ss_pred HHHHHHHhH
Confidence 999877654
No 356
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=3e-07 Score=72.56 Aligned_cols=157 Identities=20% Similarity=0.258 Sum_probs=96.4
Q ss_pred CCCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCC----------------C-------cccceeEEEEEEEEECC---
Q 027824 6 PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLE----------------S-------KSTIGVEFATRSLRIDN--- 59 (218)
Q Consensus 6 ~~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~----------------~-------~~t~~~~~~~~~~~~~~--- 59 (218)
|+.+.-..++++++|.-.+|||||+--|..+..+.- . ..+.|++...+.+.+..
T Consensus 160 Pd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 160 PDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred CCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 345555679999999999999999987765543211 1 12223332222222211
Q ss_pred -------eEEEEEEEeCCCchhhhhhhhhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027824 60 -------KVVKAQIWDTAGQERYRAITSAYYR--GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130 (218)
Q Consensus 60 -------~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 130 (218)
..--+.++|..|+..|.......+. ..|..++|+++..+-.+.. ++.+-.+.. .++|++++++|+|+
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A---L~iPfFvlvtK~Dl 315 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA---LNIPFFVLVTKMDL 315 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH---hCCCeEEEEEeecc
Confidence 1124789999999998765543332 3577888999887654432 222333333 57999999999999
Q ss_pred CCCcc------------------------cCHHHHHHHHHH----cCCeEEEEccCCCCCHHHH
Q 027824 131 RHLVA------------------------VSTEDGKAFAEQ----ESLYFMETSALDATNVENA 166 (218)
Q Consensus 131 ~~~~~------------------------~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~~~ 166 (218)
....- -+..++...+++ +-.|+|-+|+.+|+|++-+
T Consensus 316 ~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 316 VDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred ccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 64311 122222222222 3458999999999997644
No 357
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.55 E-value=3.7e-07 Score=66.16 Aligned_cols=98 Identities=13% Similarity=0.028 Sum_probs=63.9
Q ss_pred CCch-hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc
Q 027824 70 AGQE-RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE 148 (218)
Q Consensus 70 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 148 (218)
||+. .........++++|.+++|+|+.++...... .+...+ .+.|+++|+||+|+...... ....++....
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~ 74 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKKT--KKWLKYFESK 74 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHHH--HHHHHHHHhc
Confidence 4432 3344556678899999999999876432211 111211 35789999999999543211 1122333334
Q ss_pred CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027824 149 SLYFMETSALDATNVENAFTEVLTQIY 175 (218)
Q Consensus 149 ~~~~~~~Sa~~~~~v~~~~~~i~~~i~ 175 (218)
+..++.+||+++.|++++...+...+.
T Consensus 75 ~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 75 GEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 567899999999999999998887653
No 358
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.55 E-value=1.7e-07 Score=72.90 Aligned_cols=85 Identities=15% Similarity=0.174 Sum_probs=64.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECC---------------eEEEEEEEeCCCch---
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDN---------------KVVKAQIWDTAGQE--- 73 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~---------------~~~~~~i~D~~G~~--- 73 (218)
+.++|.+||.|++|||||+|.|++........|..+++.....+.+.. ....+.++|++|.-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 468999999999999999999999888777778888887666655432 22468999999832
Q ss_pred -hhhhhhh---hhhcCCcEEEEEEECC
Q 027824 74 -RYRAITS---AYYRGAVGALLVYDVT 96 (218)
Q Consensus 74 -~~~~~~~---~~~~~~d~~i~v~d~~ 96 (218)
.-..+-. .-++.+|+++-|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 2233333 3457899999998863
No 359
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.54 E-value=1.8e-07 Score=69.04 Aligned_cols=56 Identities=21% Similarity=0.377 Sum_probs=39.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCC-------CCcccceeEEEEEEEEECCeEEEEEEEeCCC
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNL-------ESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 71 (218)
..+++++|.+|+|||||+|.|.+..... ......+++.....+.++. .+.|+||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 3589999999999999999998754311 1112234555555555543 468999999
No 360
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=1.5e-06 Score=65.07 Aligned_cols=160 Identities=19% Similarity=0.246 Sum_probs=102.8
Q ss_pred eEEEEEcCCCC--ChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCe--EEEEEEEeCCCchhhhhhhhhhhcCCcEE
Q 027824 14 FKLVLIGDSGV--GKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNK--VVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (218)
Q Consensus 14 ~~i~l~G~~~~--GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 89 (218)
.-++|+|-+|+ ||.+|+.+|....+..+......+.++..++.-... .+.+.|--.. +++.-..........++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic--de~~lpn~~~a~pl~a~ 82 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC--DEKFLPNAEIAEPLQAF 82 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc--chhccCCcccccceeeE
Confidence 45789999998 999999999888887666555556665555532211 2333333222 22322222334566789
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC---------------------------c--------
Q 027824 90 LLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL---------------------------V-------- 134 (218)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~---------------------------~-------- 134 (218)
+++||++....+..+..|+....... --.++.++||.|.... .
T Consensus 83 vmvfdlse~s~l~alqdwl~htdins--fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegs 160 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQDWLPHTDINS--FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGS 160 (418)
T ss_pred EEEEeccchhhhHHHHhhcccccccc--chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccc
Confidence 99999999999999999977542211 1124677899997411 0
Q ss_pred ------c---cCHHHHHHHHHHcCCeEEEEccCC------------CCCHHHHHHHHHHHHHHH
Q 027824 135 ------A---VSTEDGKAFAEQESLYFMETSALD------------ATNVENAFTEVLTQIYKI 177 (218)
Q Consensus 135 ------~---~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~v~~~~~~i~~~i~~~ 177 (218)
. ..-..+.+|+.++|+.|++.++.+ -.||+.+|..+.-..+..
T Consensus 161 sllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpg 224 (418)
T KOG4273|consen 161 SLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPG 224 (418)
T ss_pred cccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCcc
Confidence 0 011225678888999999988843 357888888876655543
No 361
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.52 E-value=1.1e-07 Score=67.37 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCC------CCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNL------ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR 76 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 76 (218)
-.++++|++|||||||+|.|++..... .......++.....+.++... .|+||||-.++.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence 468999999999999999998863211 111112223334445555544 499999965543
No 362
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.52 E-value=5.5e-07 Score=63.11 Aligned_cols=76 Identities=18% Similarity=0.217 Sum_probs=52.1
Q ss_pred hhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEcc
Q 027824 80 SAYYRGAVGALLVYDVTRHATFQ--NVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 157 (218)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (218)
...+..+|++++|+|+.++.+.. .+..|+... . .++|+++|+||+|+..+.. .....++....+..++.+||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 34578899999999998876533 334444332 1 4689999999999854322 12334455556788999999
Q ss_pred CCCC
Q 027824 158 LDAT 161 (218)
Q Consensus 158 ~~~~ 161 (218)
.++.
T Consensus 80 ~~~~ 83 (141)
T cd01857 80 LKEN 83 (141)
T ss_pred cCCC
Confidence 8765
No 363
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.51 E-value=8.6e-07 Score=69.22 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=64.4
Q ss_pred CCch-hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc
Q 027824 70 AGQE-RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE 148 (218)
Q Consensus 70 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 148 (218)
|||. .........++.+|++|+|+|+.++.+... .++..+. .+.|+|+|+||+|+...... ....+.....
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAVT--KQWLKYFEEK 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHHH--HHHHHHHHHc
Confidence 5553 223445667889999999999987644322 1111111 25799999999999542111 1111222334
Q ss_pred CCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027824 149 SLYFMETSALDATNVENAFTEVLTQIYK 176 (218)
Q Consensus 149 ~~~~~~~Sa~~~~~v~~~~~~i~~~i~~ 176 (218)
+.+++.+|++++.|++++++.+.+.+.+
T Consensus 77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 77 GIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 6678999999999999999888776644
No 364
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=2e-07 Score=74.48 Aligned_cols=155 Identities=16% Similarity=0.172 Sum_probs=105.6
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCc--------CCCC--------CcccceeEEEEEEEEECCeEEEEEEEeCCCch
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNE--------FNLE--------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~--------~~~~--------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 73 (218)
.....+|.++.+..+||||...|++.-. ...- ....-|+++...-+.++.+...+.++||||+-
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv 113 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV 113 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence 3345689999999999999999875421 1100 01224667777778889999999999999999
Q ss_pred hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe--
Q 027824 74 RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY-- 151 (218)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-- 151 (218)
+|+--...+++-.|+.+.|||.+.+-.-+.+.-|.+ ..+.++|-+.++||+|....... ......-.+.+++
T Consensus 114 df~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~anfe--~avdsi~ekl~ak~l 187 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLAANFE--NAVDSIEEKLGAKAL 187 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhhhhhh--hHHHHHHHHhCCceE
Confidence 999888889999999999999998766666666744 34478899999999997542211 1123333445554
Q ss_pred EEEEccCCCCCHHHHHHHH
Q 027824 152 FMETSALDATNVENAFTEV 170 (218)
Q Consensus 152 ~~~~Sa~~~~~v~~~~~~i 170 (218)
...+-.-.+.++..-|-.+
T Consensus 188 ~l~lpi~eak~fnkg~ldi 206 (753)
T KOG0464|consen 188 KLQLPIGEAKGFNKGFLDI 206 (753)
T ss_pred EEEecccccccccchHHHH
Confidence 2333334445553333333
No 365
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.47 E-value=2.1e-05 Score=65.25 Aligned_cols=150 Identities=17% Similarity=0.208 Sum_probs=92.5
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCc-c------------------------------c------------
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-S------------------------------T------------ 45 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~-~------------------------------t------------ 45 (218)
..++..+|+|+|+.++||||.+..+......+... . |
T Consensus 304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 45778999999999999999998764432211000 0 0
Q ss_pred ---------ceeEEE--EEEEEECCeE-EEEEEEeCCC-------------chhhhhhhhhhhcCCcEEEEEEECCChhh
Q 027824 46 ---------IGVEFA--TRSLRIDNKV-VKAQIWDTAG-------------QERYRAITSAYYRGAVGALLVYDVTRHAT 100 (218)
Q Consensus 46 ---------~~~~~~--~~~~~~~~~~-~~~~i~D~~G-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 100 (218)
.|.++. ...+.+.+.+ -...+.|.|| .+....+..+++.+.+++|+|+--...+.
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA 463 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA 463 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch
Confidence 122222 2223333433 2577899999 22334566789999999999986443221
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----CCeEEEEccCCC
Q 027824 101 FQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQE-----SLYFMETSALDA 160 (218)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~ 160 (218)
-... .-..+.+....+...|+|+||.|+.+..-.+...++++.... -+.||-+-.-.|
T Consensus 464 ERSn--VTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrG 526 (980)
T KOG0447|consen 464 ERSI--VTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG 526 (980)
T ss_pred hhhh--HHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCC
Confidence 1111 112234455578889999999999887777777777776642 223665544433
No 366
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.47 E-value=3.6e-07 Score=72.67 Aligned_cols=57 Identities=21% Similarity=0.366 Sum_probs=44.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 72 (218)
..++++++|.|++|||||||+|.+..... ..+..|++.....+.++.. +.++||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~-~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAK-TSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhccccee-eCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 34789999999999999999999987632 2244477777777777664 679999994
No 367
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.46 E-value=5.2e-06 Score=62.81 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=52.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC--cCCCCCc---ccceeEEEEEEEEECCeEEEEEEEeCCCchhhhh------hh
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKN--EFNLESK---STIGVEFATRSLRIDNKVVKAQIWDTAGQERYRA------IT 79 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~--~~~~~~~---~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~ 79 (218)
.+..-|.++|++++|||+|+|+|++. .+..... .|.|+-.....+.. +....+.++||+|...... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhH
Confidence 45678999999999999999999998 5543322 22222222221111 2346789999999543221 11
Q ss_pred hhhhc--CCcEEEEEEECCC
Q 027824 80 SAYYR--GAVGALLVYDVTR 97 (218)
Q Consensus 80 ~~~~~--~~d~~i~v~d~~~ 97 (218)
...+. -++.+||..+.+.
T Consensus 84 ~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 84 LFALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHHhCEEEEeccCcc
Confidence 22222 3788888777764
No 368
>PRK01889 GTPase RsgA; Reviewed
Probab=98.45 E-value=1.2e-06 Score=70.81 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=59.3
Q ss_pred hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCeEEEEccCCCC
Q 027824 83 YRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-QESLYFMETSALDAT 161 (218)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 161 (218)
..++|.+++|+++..+.....+..++..+.. .+++.++|+||+|+.++.. +....+.. ..+.+++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCCc
Confidence 5789999999999754455555666666554 4677899999999965321 11222222 357789999999999
Q ss_pred CHHHHHHHHH
Q 027824 162 NVENAFTEVL 171 (218)
Q Consensus 162 ~v~~~~~~i~ 171 (218)
|++++..++.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999888773
No 369
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=1.6e-06 Score=72.34 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=82.3
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCC-----CC-----------cccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNL-----ES-----------KSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~-----~~-----------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 72 (218)
+....-+|.+..+-.+||||+-++.+.-..-. .. ...-|++....-......++.+.++||||+
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGH 114 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGH 114 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCc
Confidence 33456788999999999999999876432110 00 011234444444444555788999999999
Q ss_pred hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027824 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130 (218)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 130 (218)
-+|.--....++-.|+.+++++...+-.-+...-|.+.-. -++|.|.++||.|.
T Consensus 115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r----y~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR----YNVPRICFINKMDR 168 (721)
T ss_pred eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh----cCCCeEEEEehhhh
Confidence 8887667777888999999999887654455555654443 47899999999997
No 370
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.39 E-value=1e-06 Score=62.75 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=38.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCC-CCcccceeEEEEEEEEECCeEEEEEEEeCCC
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNL-ESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 71 (218)
....+++++|.+++|||||+|.+.+..... ...+. ++.....+..+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~--~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPG--TTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCC--cccceEEEEec---CCEEEEECCC
Confidence 456889999999999999999999865322 22222 22323333333 2478999998
No 371
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.39 E-value=1.8e-06 Score=67.76 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=65.1
Q ss_pred CCCch-hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH
Q 027824 69 TAGQE-RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ 147 (218)
Q Consensus 69 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 147 (218)
.|||. .-.......+..+|++|+|+|+.++.+... .++..+. .+.|+++|+||+|+.+... .+...++...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 46654 223344567889999999999987644322 1122221 2679999999999854211 1112222334
Q ss_pred cCCeEEEEccCCCCCHHHHHHHHHHHHHH
Q 027824 148 ESLYFMETSALDATNVENAFTEVLTQIYK 176 (218)
Q Consensus 148 ~~~~~~~~Sa~~~~~v~~~~~~i~~~i~~ 176 (218)
.+..++.+|++++.|++++++.+...+..
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 46778999999999999999888776544
No 372
>PRK13796 GTPase YqeH; Provisional
Probab=98.39 E-value=3.6e-06 Score=68.29 Aligned_cols=94 Identities=20% Similarity=0.288 Sum_probs=61.7
Q ss_pred hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH----HHHc
Q 027824 73 ERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAF----AEQE 148 (218)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~ 148 (218)
+.|...........+.+++|+|+.+.. ..|...+.... .+.|+++|+||+|+... ....+...+| ++..
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence 345554444333334899999998742 22444444433 36789999999999642 2333344444 4455
Q ss_pred CC---eEEEEccCCCCCHHHHHHHHHHH
Q 027824 149 SL---YFMETSALDATNVENAFTEVLTQ 173 (218)
Q Consensus 149 ~~---~~~~~Sa~~~~~v~~~~~~i~~~ 173 (218)
++ .++.+||+++.|++++++.|.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 58999999999999999988653
No 373
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.35 E-value=3.2e-06 Score=60.42 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=38.4
Q ss_pred EEEEEEEeCCCchhhhhhhhh--------hhcCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027824 61 VVKAQIWDTAGQERYRAITSA--------YYRGAVGALLVYDVTRHAT-FQNVGRWLRELREHTDPNIIVMLIGNKTDL 130 (218)
Q Consensus 61 ~~~~~i~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 130 (218)
.....++|++|..+...+... ..-.++.+++++|+..-.. +.....+...+.... ++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad------~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD------RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC------EEEEecccC
Confidence 356789999996543333322 1235788999999764322 222233445554433 789999996
No 374
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=7.3e-06 Score=74.32 Aligned_cols=111 Identities=28% Similarity=0.319 Sum_probs=68.3
Q ss_pred EEEEcCCCCChHHHHHHHhcCcCCCC--C----cccceeEEEEEEEEECCeEEEEEEEeCCCc--------hhhhhhhhh
Q 027824 16 LVLIGDSGVGKSNLLSRFTKNEFNLE--S----KSTIGVEFATRSLRIDNKVVKAQIWDTAGQ--------ERYRAITSA 81 (218)
Q Consensus 16 i~l~G~~~~GKssli~~l~~~~~~~~--~----~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~ 81 (218)
-+|+|++|+||||++..- +..|+.. . ....+ .......+.+.- .++||.|. +.-...|..
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g--T~~cdwwf~dea---VlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG--TRNCDWWFTDEA---VLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC--CcccCcccccce---EEEcCCcceecccCcchhhHHHHHH
Confidence 378999999999998643 2222211 1 01111 112223444444 48999982 122334443
Q ss_pred h---------hcCCcEEEEEEECCCh-----h----hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824 82 Y---------YRGAVGALLVYDVTRH-----A----TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132 (218)
Q Consensus 82 ~---------~~~~d~~i~v~d~~~~-----~----s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 132 (218)
+ .+..+++|+.+|+.+- . ....++.-+.++........|++|++||.|+..
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 3 2568999999999742 1 123345556677777778899999999999855
No 375
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.29 E-value=8e-06 Score=64.86 Aligned_cols=143 Identities=17% Similarity=0.172 Sum_probs=79.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCC---------------------cccceeEEEEEEEEE-------------
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLES---------------------KSTIGVEFATRSLRI------------- 57 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~---------------------~~t~~~~~~~~~~~~------------- 57 (218)
....|+++|++|+||||++..+......... ....+..+.......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999987543211000 001111211110000
Q ss_pred CCeEEEEEEEeCCCchhhhhh----hhhh--------hcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEE
Q 027824 58 DNKVVKAQIWDTAGQERYRAI----TSAY--------YRGAVGALLVYDVTRHA-TFQNVGRWLRELREHTDPNIIVMLI 124 (218)
Q Consensus 58 ~~~~~~~~i~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv 124 (218)
....+.+.|+||+|....... ...+ -...+..++|+|++.+. .+..+ ..+.... .+.-+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a----~~f~~~~---~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA----KAFHEAV---GLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH----HHHHhhC---CCCEEE
Confidence 123356899999996432211 1111 13467789999998542 33332 2222111 234789
Q ss_pred EeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027824 125 GNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167 (218)
Q Consensus 125 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (218)
+||.|....- =.+...+...++|+..++ +|++++++-
T Consensus 266 lTKlD~t~~~----G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 266 LTKLDGTAKG----GVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EECCCCCCCc----cHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 9999954321 234555677799988888 667777663
No 376
>PRK12288 GTPase RsgA; Reviewed
Probab=98.28 E-value=2.1e-06 Score=68.98 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=37.1
Q ss_pred EEEEcCCCCChHHHHHHHhcCcCCCC-C-----cccceeEEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027824 16 LVLIGDSGVGKSNLLSRFTKNEFNLE-S-----KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR 76 (218)
Q Consensus 16 i~l~G~~~~GKssli~~l~~~~~~~~-~-----~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 76 (218)
++++|.+|+|||||+|+|++...... . .....++.....+.+.+.. .|+||||..++.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 78999999999999999997643211 1 1111123334444454333 499999976655
No 377
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.28 E-value=6.7e-06 Score=62.04 Aligned_cols=90 Identities=21% Similarity=0.176 Sum_probs=60.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh-------hhhhhhhhc
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY-------RAITSAYYR 84 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~ 84 (218)
...++.++|.|++||||++..+.+...+.......+.......+.+.+. ++++.|.||.-+- ........+
T Consensus 58 g~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~ga--Kiqlldlpgiiegakdgkgrg~qviavar 135 (358)
T KOG1487|consen 58 GDARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGA--KIQLLDLPGIIEGAKDGKGRGKQVIAVAR 135 (358)
T ss_pred cceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEecccc--ceeeecCcchhcccccCCCCccEEEEEee
Confidence 3468999999999999999999886654444344444444444545554 5799999994322 122234456
Q ss_pred CCcEEEEEEECCChhhHHH
Q 027824 85 GAVGALLVYDVTRHATFQN 103 (218)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~ 103 (218)
-++.+++|.|+..|-+-..
T Consensus 136 tcnli~~vld~~kp~~hk~ 154 (358)
T KOG1487|consen 136 TCNLIFIVLDVLKPLSHKK 154 (358)
T ss_pred cccEEEEEeeccCcccHHH
Confidence 7889999999877655443
No 378
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.26 E-value=6.5e-06 Score=64.01 Aligned_cols=94 Identities=16% Similarity=0.066 Sum_probs=56.8
Q ss_pred EEEEEEEeCCCchhhhhhhh-------hhh-----cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 027824 61 VVKAQIWDTAGQERYRAITS-------AYY-----RGAVGALLVYDVTRH-ATFQNVGRWLRELREHTDPNIIVMLIGNK 127 (218)
Q Consensus 61 ~~~~~i~D~~G~~~~~~~~~-------~~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 127 (218)
.+.+.|+||+|......... ... ..+|.+++|+|++.+ +.+... ..+.... .+.-+|+||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~---~~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV---GLTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC---CCCEEEEEc
Confidence 35789999999654332211 111 247899999999754 233332 2222211 135789999
Q ss_pred CCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 027824 128 TDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 167 (218)
Q Consensus 128 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (218)
.|..... -.+..+....+.|+..++ +|++++++-
T Consensus 227 lDe~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 227 LDGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred cCCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 9974422 234555556789988888 666676653
No 379
>PRK12289 GTPase RsgA; Reviewed
Probab=98.25 E-value=1.8e-06 Score=69.32 Aligned_cols=59 Identities=25% Similarity=0.209 Sum_probs=37.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCC-ccc-----ceeEEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLES-KST-----IGVEFATRSLRIDNKVVKAQIWDTAGQERYR 76 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~-~~t-----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 76 (218)
.++++|++|+|||||+|.|++....... .+. ..++.....+.+.+.. .|+||||-..+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~ 238 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPD 238 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccccc
Confidence 3799999999999999999976432211 111 1133334444454333 599999975433
No 380
>PRK14974 cell division protein FtsY; Provisional
Probab=98.24 E-value=1.1e-05 Score=64.34 Aligned_cols=94 Identities=16% Similarity=0.074 Sum_probs=56.1
Q ss_pred EEEEEEeCCCchhhhh-h---hhhh--hcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 027824 62 VKAQIWDTAGQERYRA-I---TSAY--YRGAVGALLVYDVTRHA-TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134 (218)
Q Consensus 62 ~~~~i~D~~G~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 134 (218)
+.+.|+||+|...... + ...+ .-+.|.+++|+|+..+. ..+.+ ..+.... .+--+|+||.|....-
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~~---~~~giIlTKlD~~~~~ 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEAV---GIDGVILTKVDADAKG 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhcC---CCCEEEEeeecCCCCc
Confidence 4589999999653221 1 1112 23578899999997653 22222 2222211 1247889999975422
Q ss_pred ccCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 027824 135 AVSTEDGKAFAEQESLYFMETSALDATNVENAFT 168 (218)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (218)
- .+...+...+.|+..++ +|++++++..
T Consensus 296 G----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 296 G----AALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred c----HHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 1 24455556788988887 6888877643
No 381
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.23 E-value=2.1e-06 Score=66.58 Aligned_cols=59 Identities=24% Similarity=0.233 Sum_probs=40.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc------CCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNE------FNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYR 76 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 76 (218)
-.+++|++|+|||||+|+|.... .+........++.....+.+++..+ |+||||-.++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence 57899999999999999998642 2222222233445566667765554 99999976554
No 382
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.22 E-value=3.4e-05 Score=62.42 Aligned_cols=156 Identities=18% Similarity=0.223 Sum_probs=87.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCC--------------CCCcccceeEE----------EEEEEEE-CCeEEEEE
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFN--------------LESKSTIGVEF----------ATRSLRI-DNKVVKAQ 65 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~--------------~~~~~t~~~~~----------~~~~~~~-~~~~~~~~ 65 (218)
...+-|.|+||.-+||||||.||.....- +-+....|.++ .-..+.+ ++..+++.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 34588999999999999999998653210 00001111111 1123334 46678999
Q ss_pred EEeCCCch-------------hh-hhhhh--------h-------hh--cCCcEEEEEEECC----ChhhHHHH-HHHHH
Q 027824 66 IWDTAGQE-------------RY-RAITS--------A-------YY--RGAVGALLVYDVT----RHATFQNV-GRWLR 109 (218)
Q Consensus 66 i~D~~G~~-------------~~-~~~~~--------~-------~~--~~~d~~i~v~d~~----~~~s~~~~-~~~~~ 109 (218)
+.||.|-- ++ ..-|. + .+ +..=++++.-|-+ .++.+... ..-..
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 99999810 00 00111 0 11 2334566666654 23444332 22344
Q ss_pred HHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccC--CCCCHHHHHHHHH
Q 027824 110 ELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL--DATNVENAFTEVL 171 (218)
Q Consensus 110 ~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~v~~~~~~i~ 171 (218)
++.. -++|+++++|-.+-.. +...+.+.++..+++++++.+++. +.+++..+|..++
T Consensus 175 ELk~---igKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 175 ELKE---IGKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HHHH---hCCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence 4443 6789999999987433 233345667777789988777764 4455555554443
No 383
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.22 E-value=2.3e-06 Score=70.16 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=46.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 72 (218)
..+.|.+||.|+|||||+||.|.+....... .|.|-+.+..++.+.. .+.+.||||.
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCCc
Confidence 3799999999999999999999998764433 6777777777777765 4579999994
No 384
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.16 E-value=1.5e-05 Score=65.42 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=77.3
Q ss_pred EEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCCh-------hhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCC
Q 027824 61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH-------ATFQNVGRWLRELREHTD----PNIIVMLIGNKTD 129 (218)
Q Consensus 61 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D 129 (218)
...+.++|++|+...+.-|..++.+++++|||+++++- .....+.+-+..+..... .+.|+||++||.|
T Consensus 235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D 314 (389)
T PF00503_consen 235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKID 314 (389)
T ss_dssp TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HH
T ss_pred ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHH
Confidence 35789999999999999999999999999999998742 122334333344333322 5789999999999
Q ss_pred CC------CC----------c--ccCHHHHHHHHHH------------cCCeEEEEccCCCCCHHHHHHHHHHH
Q 027824 130 LR------HL----------V--AVSTEDGKAFAEQ------------ESLYFMETSALDATNVENAFTEVLTQ 173 (218)
Q Consensus 130 l~------~~----------~--~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (218)
+- .+ - .-+.+.+..+... ..+.+..|+|.+..++..+|+.+.+-
T Consensus 315 ~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 315 LFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI 388 (389)
T ss_dssp HHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence 82 11 1 1234555555443 11246688999989999999887653
No 385
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.15 E-value=2.9e-05 Score=60.30 Aligned_cols=88 Identities=15% Similarity=0.045 Sum_probs=65.1
Q ss_pred hhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCC
Q 027824 82 YYRGAVGALLVYDVTRHA-TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDA 160 (218)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (218)
-..++|-+++++++.+|+ +...+..++-.+.. .++..++++||+|+.++.+....+........+.+++.+|++++
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~ 152 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNG 152 (301)
T ss_pred cccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCc
Confidence 344677788888888875 55555556555554 56777888999999775554434456667778999999999999
Q ss_pred CCHHHHHHHHHH
Q 027824 161 TNVENAFTEVLT 172 (218)
Q Consensus 161 ~~v~~~~~~i~~ 172 (218)
.+++++...+..
T Consensus 153 ~~~~~l~~~l~~ 164 (301)
T COG1162 153 DGLEELAELLAG 164 (301)
T ss_pred ccHHHHHHHhcC
Confidence 999998877654
No 386
>PRK13796 GTPase YqeH; Provisional
Probab=98.15 E-value=3.8e-06 Score=68.12 Aligned_cols=56 Identities=23% Similarity=0.386 Sum_probs=37.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCC----CCcccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNL----ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 72 (218)
.++.++|.+|+|||||+|+|+...... ...+..|++.....+.+++. ..++||||.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence 479999999999999999998643111 11123344444555555443 369999996
No 387
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.12 E-value=5.2e-06 Score=63.64 Aligned_cols=58 Identities=22% Similarity=0.199 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCC------CcccceeEEEEEEEEECCeEEEEEEEeCCCchhh
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLE------SKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY 75 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 75 (218)
-.++++|++|+|||||+|+|.+...... ......++.....+.+.+ . .|+||||-..+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~-~---~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG-G---LIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC-c---EEEeCCCcccc
Confidence 3688999999999999999987643211 111111233333344432 2 59999996544
No 388
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.11 E-value=7.6e-06 Score=66.29 Aligned_cols=57 Identities=21% Similarity=0.364 Sum_probs=37.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCC----CCcccceeEEEEEEEEECCeEEEEEEEeCCCch
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNL----ESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQE 73 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 73 (218)
.+++++|.+|+|||||+|++++..... ......+++.....+.+++. +.++||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCC
Confidence 489999999999999999998753210 11122334444444544332 4699999954
No 389
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.09 E-value=1.2e-05 Score=59.71 Aligned_cols=121 Identities=18% Similarity=0.208 Sum_probs=78.2
Q ss_pred eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChh----------hHHHHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 027824 60 KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHA----------TFQNVGRWLRELREHTD-PNIIVMLIGNKT 128 (218)
Q Consensus 60 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~ 128 (218)
..+.+.+.|.+|+...+.-|..++.++-.++|.+.++.-+ .++.-..++..+..+.= .+.++|+..||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 3456778999999888888888888877777766665321 11222223333322211 578899999999
Q ss_pred CCCCC----------------cccCHHHHHHHHHHc----C------CeEEEEccCCCCCHHHHHHHHHHHHHHHHhh
Q 027824 129 DLRHL----------------VAVSTEDGKAFAEQE----S------LYFMETSALDATNVENAFTEVLTQIYKIVSK 180 (218)
Q Consensus 129 Dl~~~----------------~~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~~v~~~~~~i~~~i~~~~~~ 180 (218)
|+.++ .+.+.+.+++|..+. | +.-.++.|.+-+|+.-+|..+-..+++..-+
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~Lk 354 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK 354 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhhH
Confidence 98532 223444566665542 1 1234577888899999999998888776543
No 390
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.08 E-value=1.9e-05 Score=56.93 Aligned_cols=136 Identities=18% Similarity=0.252 Sum_probs=69.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeC-CCc---------------------
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDT-AGQ--------------------- 72 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~-~G~--------------------- 72 (218)
+|++.|++|+|||||+++++...... ..+..| +....+.-++..+-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999987643211 112222 22233333444455555555 331
Q ss_pred -hhhhhh----hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC-CCCCCcccCHHHHHHHHH
Q 027824 73 -ERYRAI----TSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKT-DLRHLVAVSTEDGKAFAE 146 (218)
Q Consensus 73 -~~~~~~----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~~~ 146 (218)
+.+... ....+..+| ++++|=--+..+. ...|.+.+......+.|+|.++.+. +. ....++..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~-~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELK-SPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC--CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc-CHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence 111111 111224555 6777754321111 1234455555555778888888776 32 12555666
Q ss_pred HcCCeEEEEccCCCCCHH
Q 027824 147 QESLYFMETSALDATNVE 164 (218)
Q Consensus 147 ~~~~~~~~~Sa~~~~~v~ 164 (218)
..++.+++++..+.+.+.
T Consensus 147 ~~~~~i~~vt~~NRd~l~ 164 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDALP 164 (168)
T ss_dssp TTTSEEEE--TTTCCCHH
T ss_pred CCCcEEEEeChhHHhhHh
Confidence 678899999887766553
No 391
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=2.5e-05 Score=59.57 Aligned_cols=114 Identities=23% Similarity=0.381 Sum_probs=70.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCc----ccceeEEEEEEEEECCeEEEEEEEeCCCc-------hhhhhh---
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESK----STIGVEFATRSLRIDNKVVKAQIWDTAGQ-------ERYRAI--- 78 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~~~~--- 78 (218)
.++|+.+|..|.|||||+++|++-.+..... ++.........+.-.+..+++.|.||.|- +.|..+
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 5899999999999999999999987754332 44444444444444566788999999991 122111
Q ss_pred ----hhhhh---------------cCCcEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824 79 ----TSAYY---------------RGAVGALLVYDVTRHATFQNVGR-WLRELREHTDPNIIVMLIGNKTDLR 131 (218)
Q Consensus 79 ----~~~~~---------------~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~ 131 (218)
..+|+ ...++.+|.++.+. .++..+.- .++.+. ..+-+|.++-|.|..
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld----skVNIIPvIAKaDti 189 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD----SKVNIIPVIAKADTI 189 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh----hhhhhHHHHHHhhhh
Confidence 11111 24567777777763 44444322 233332 334467777788864
No 392
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.00 E-value=1.5e-05 Score=62.62 Aligned_cols=60 Identities=22% Similarity=0.233 Sum_probs=38.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCc------ccceeEEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESK------STIGVEFATRSLRIDNKVVKAQIWDTAGQERYR 76 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 76 (218)
..++++|++|+|||||+|.|++........ ....++.....+.+.+.. .++|+||..++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence 469999999999999999998865422111 111123333444444322 499999986553
No 393
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.00 E-value=7.3e-05 Score=61.45 Aligned_cols=134 Identities=11% Similarity=0.064 Sum_probs=71.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC------cC---CCCC------------cccceeEEEEEEEEEC-------------
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKN------EF---NLES------------KSTIGVEFATRSLRID------------- 58 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~------~~---~~~~------------~~t~~~~~~~~~~~~~------------- 58 (218)
...|+++|.+|+||||++.+|... .. .... ....+.++.......+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 467999999999999999987521 10 0000 0011222221110000
Q ss_pred CeEEEEEEEeCCCchhhhhhh----hhh--hcCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824 59 NKVVKAQIWDTAGQERYRAIT----SAY--YRGAVGALLVYDVTRHAT-FQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131 (218)
Q Consensus 59 ~~~~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 131 (218)
...+.+.|+||+|........ ..+ ....+-+++|+|++-+.. .+. ...+... -.+--+|+||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~---~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDS---VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhc---cCCcEEEEECccCC
Confidence 124578999999965332211 111 235678999999875532 222 2333221 13467889999974
Q ss_pred CCcccCHHHHHHHHHHcCCeEEEEcc
Q 027824 132 HLVAVSTEDGKAFAEQESLYFMETSA 157 (218)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (218)
..- =.+.......+.|+.+++.
T Consensus 253 arg----G~aLs~~~~t~~PI~fig~ 274 (429)
T TIGR01425 253 AKG----GGALSAVAATKSPIIFIGT 274 (429)
T ss_pred CCc----cHHhhhHHHHCCCeEEEcC
Confidence 311 1133444556777655443
No 394
>PRK00098 GTPase RsgA; Reviewed
Probab=97.96 E-value=1.7e-05 Score=62.58 Aligned_cols=57 Identities=26% Similarity=0.233 Sum_probs=35.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCc-c-----cceeEEEEEEEEECCeEEEEEEEeCCCchh
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESK-S-----TIGVEFATRSLRIDNKVVKAQIWDTAGQER 74 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~-~-----t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 74 (218)
.++++|++|+|||||+|.|++........ + ...++.....+.+++.. .++||||...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~---~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGG---LLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCc---EEEECCCcCc
Confidence 58999999999999999998765322111 0 00122233333444332 5899999653
No 395
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=0.00037 Score=58.62 Aligned_cols=157 Identities=14% Similarity=0.153 Sum_probs=80.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCCCC---Cccc--------------------ceeEEEEEEEE------E-CCeE
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLE---SKST--------------------IGVEFATRSLR------I-DNKV 61 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~~~---~~~t--------------------~~~~~~~~~~~------~-~~~~ 61 (218)
..-.|+|+|+.|+||||++..|........ .... .++.+....-. + ....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 345789999999999999988764211100 0000 11111100000 0 0123
Q ss_pred EEEEEEeCCCchhhhhhhh----h--hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 027824 62 VKAQIWDTAGQERYRAITS----A--YYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA 135 (218)
Q Consensus 62 ~~~~i~D~~G~~~~~~~~~----~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 135 (218)
+.+.|+||+|......... . .... ...++|++.+.. ...+...+..+.. ..+.-+|+||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~-~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~--- 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQ-VTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG--- 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhc-CCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc---
Confidence 5789999999643322111 0 1112 245677777642 3333333333332 235679999999733
Q ss_pred cCHHHHHHHHHHcCCeEEEEccCCC--CCHHHH-HHHHHHHHHHHHh
Q 027824 136 VSTEDGKAFAEQESLYFMETSALDA--TNVENA-FTEVLTQIYKIVS 179 (218)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~Sa~~~--~~v~~~-~~~i~~~i~~~~~ 179 (218)
..-.+.......+.++..++.-.+ +++... -..+++.+...+.
T Consensus 499 -~lG~aLsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~l~~ 544 (559)
T PRK12727 499 -RFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLEDLRR 544 (559)
T ss_pred -chhHHHHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHHHHHh
Confidence 223466667778888776665433 233321 3345555555443
No 396
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.93 E-value=8.7e-05 Score=53.79 Aligned_cols=82 Identities=17% Similarity=0.024 Sum_probs=45.4
Q ss_pred EEEEEEeCCCchhhh----hhhhhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 027824 62 VKAQIWDTAGQERYR----AITSAYY--RGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA 135 (218)
Q Consensus 62 ~~~~i~D~~G~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 135 (218)
..+.|+|++|..... .....+. ...+.+++|+|...... ...+...+.... + ..-+|.||.|.....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~~- 155 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDARG- 155 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCCc-
Confidence 457889999964221 1111121 34899999999865432 222334443222 2 356777999975422
Q ss_pred cCHHHHHHHHHHcCCeEE
Q 027824 136 VSTEDGKAFAEQESLYFM 153 (218)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~ 153 (218)
-.+...+...++|+.
T Consensus 156 ---g~~~~~~~~~~~p~~ 170 (173)
T cd03115 156 ---GAALSIRAVTGKPIK 170 (173)
T ss_pred ---chhhhhHHHHCcCeE
Confidence 223345666676654
No 397
>PRK13695 putative NTPase; Provisional
Probab=97.93 E-value=0.00051 Score=49.83 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~ 36 (218)
++|++.|.+|+|||||+..+.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999986543
No 398
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.92 E-value=0.0003 Score=55.95 Aligned_cols=97 Identities=16% Similarity=0.124 Sum_probs=56.6
Q ss_pred EEEEEEeCCCchhhhhhhhhhhc--------CCcEEEEEEECCChhh-HHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824 62 VKAQIWDTAGQERYRAITSAYYR--------GAVGALLVYDVTRHAT-FQNV-GRWLRELREHTDPNIIVMLIGNKTDLR 131 (218)
Q Consensus 62 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s-~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 131 (218)
+...++++.|...-..+...++. ..|+++-|+|+.+-.. ...+ .....++... =+|++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence 45678888886555444333322 3577899999875432 2212 2233334332 28999999997
Q ss_pred CCcccCHHHHHHHHHHc--CCeEEEEccCCCCCHHHHH
Q 027824 132 HLVAVSTEDGKAFAEQE--SLYFMETSALDATNVENAF 167 (218)
Q Consensus 132 ~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~ 167 (218)
.+.. .+..++..++. .++++.++.. ..+..+++
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~~-~~~~~~ll 193 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSYG-DVDLAELL 193 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEcccc-CCCHHHhh
Confidence 7553 34556666664 4678888773 34444433
No 399
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=6.9e-05 Score=61.72 Aligned_cols=130 Identities=21% Similarity=0.257 Sum_probs=83.9
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCc------------CCCCCc--ccceeEEEEEEEEE----------------CC
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNE------------FNLESK--STIGVEFATRSLRI----------------DN 59 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~------------~~~~~~--~t~~~~~~~~~~~~----------------~~ 59 (218)
..+..++-++.+...|||||-..|.... |..... ..-++++...-+.+ ++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 3456788899999999999999875432 111111 11222322222211 34
Q ss_pred eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-CcccCH
Q 027824 60 KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH-LVAVST 138 (218)
Q Consensus 60 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-~~~~~~ 138 (218)
..+-+.++|.||+-+|.+-..+.++-.|+.++|+|..++--.+.-.-+.+.+.. .+.-++++||.|..- +.++..
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~ 171 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQ 171 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCH
Confidence 567899999999999999999999999999999999876544432233333432 334578999999632 344554
Q ss_pred HHHHH
Q 027824 139 EDGKA 143 (218)
Q Consensus 139 ~~~~~ 143 (218)
++.-+
T Consensus 172 EeLyq 176 (842)
T KOG0469|consen 172 EELYQ 176 (842)
T ss_pred HHHHH
Confidence 55433
No 400
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=0.00019 Score=58.12 Aligned_cols=143 Identities=17% Similarity=0.099 Sum_probs=73.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCC---CCcccceeEEE------------------EEEEEE---------CCeEE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNL---ESKSTIGVEFA------------------TRSLRI---------DNKVV 62 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~------------------~~~~~~---------~~~~~ 62 (218)
.-.++++|++|+||||++.+|....... ......+.+.+ ...... .....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3578899999999999999986542111 11111111111 000100 01234
Q ss_pred EEEEEeCCCchhhhhhhh---hhh---cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCCC
Q 027824 63 KAQIWDTAGQERYRAITS---AYY---RGAVGALLVYDVTRH-ATFQNVGRWLRELREHTDPN--IIVMLIGNKTDLRHL 133 (218)
Q Consensus 63 ~~~i~D~~G~~~~~~~~~---~~~---~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~ 133 (218)
.+.++||+|......... ..+ ....-.++|++++.. +.+..+..-+..+....... -+-=+|+||.|-...
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~ 296 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN 296 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence 678999999654332211 112 223456889998764 34443322222221111000 123577899997442
Q ss_pred cccCHHHHHHHHHHcCCeEEEEccCC
Q 027824 134 VAVSTEDGKAFAEQESLYFMETSALD 159 (218)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (218)
.=.+..++...+.++..++.-.
T Consensus 297 ----~G~~l~~~~~~~lPi~yvt~Gq 318 (374)
T PRK14722 297 ----LGGVLDTVIRYKLPVHYVSTGQ 318 (374)
T ss_pred ----ccHHHHHHHHHCcCeEEEecCC
Confidence 2235666777788876666543
No 401
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.88 E-value=7.1e-05 Score=43.07 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=30.8
Q ss_pred cCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027824 84 RGAVGALLVYDVTR--HATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129 (218)
Q Consensus 84 ~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 129 (218)
.-.++++|++|++. +.+++.-..++..+.... .+.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 44688999999985 467777777788887776 5899999999998
No 402
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.88 E-value=0.00034 Score=55.68 Aligned_cols=95 Identities=9% Similarity=0.059 Sum_probs=53.6
Q ss_pred EEEEEEeCCCchhhhhhhhhhhc--------CCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824 62 VKAQIWDTAGQERYRAITSAYYR--------GAVGALLVYDVTRHAT-FQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132 (218)
Q Consensus 62 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 132 (218)
....++++.|..+...+...++. ..++++.|+|+.+-.. .+........+... =+|++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence 44578899997665555544422 2478999999875322 11111122333332 289999999876
Q ss_pred CcccCHHHHHHHHHHc--CCeEEEEccCCCCCHHHHH
Q 027824 133 LVAVSTEDGKAFAEQE--SLYFMETSALDATNVENAF 167 (218)
Q Consensus 133 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~ 167 (218)
+. +..++..+.. .++++.++ ........+|
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 32 3455565554 45666544 3334444444
No 403
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.83 E-value=0.0018 Score=46.24 Aligned_cols=142 Identities=8% Similarity=0.016 Sum_probs=96.0
Q ss_pred CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCC
Q 027824 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA 86 (218)
Q Consensus 7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 86 (218)
..|..+...|+++|..+.++..|...+....- +...++.. . .. + |=-.+...+ -...
T Consensus 9 klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~------~~~l~Vh~--a--~s--L-------PLp~e~~~l----RprI 65 (176)
T PF11111_consen 9 KLPELNTATILLVGTEEALLQQLAEAMLEEDK------EFKLKVHL--A--KS--L-------PLPSENNNL----RPRI 65 (176)
T ss_pred cCCCcceeEEEEecccHHHHHHHHHHHHhhcc------ceeEEEEE--e--cc--C-------CCcccccCC----Ccee
Confidence 45667789999999999999999999976221 11111111 1 00 0 000111111 2357
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 027824 87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA 166 (218)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (218)
|.++|++|.+...+++.++.-+..+....-. -.+.++++-....+...+...+..+++..++++++.+.-...++...+
T Consensus 66 DlIVFvinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~l 144 (176)
T PF11111_consen 66 DLIVFVINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSL 144 (176)
T ss_pred EEEEEEEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHH
Confidence 9999999999999999887766666443322 236677777776666778888999999999999999988887766555
Q ss_pred HHHHHH
Q 027824 167 FTEVLT 172 (218)
Q Consensus 167 ~~~i~~ 172 (218)
-+.|++
T Consensus 145 AqRLL~ 150 (176)
T PF11111_consen 145 AQRLLR 150 (176)
T ss_pred HHHHHH
Confidence 555544
No 404
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.78 E-value=0.00052 Score=50.81 Aligned_cols=135 Identities=19% Similarity=0.120 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCC---------------------CcccceeEEEEEEEE-------------ECC
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLE---------------------SKSTIGVEFATRSLR-------------IDN 59 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~---------------------~~~t~~~~~~~~~~~-------------~~~ 59 (218)
..|+++|++|+||||.+-+|........ +....++.+...... ...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 4689999999999999988754221110 001123332221100 001
Q ss_pred eEEEEEEEeCCCchhhhhh----hhhhh--cCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824 60 KVVKAQIWDTAGQERYRAI----TSAYY--RGAVGALLVYDVTRHA-TFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132 (218)
Q Consensus 60 ~~~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 132 (218)
.++.+.++||+|....... ...++ ...+-+++|++++... .++.+. .+..... +--+|.||.|...
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~----~~~~~~~---~~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL----AFYEAFG---IDGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH----HHHHHSS---TCEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHH----HHhhccc---CceEEEEeecCCC
Confidence 1245789999996533221 11111 2567799999998653 333222 2222211 2257799999744
Q ss_pred CcccCHHHHHHHHHHcCCeEEEEccCC
Q 027824 133 LVAVSTEDGKAFAEQESLYFMETSALD 159 (218)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (218)
. .-.+..++...+.|+-.++.-.
T Consensus 155 ~----~G~~l~~~~~~~~Pi~~it~Gq 177 (196)
T PF00448_consen 155 R----LGALLSLAYESGLPISYITTGQ 177 (196)
T ss_dssp T----THHHHHHHHHHTSEEEEEESSS
T ss_pred C----cccceeHHHHhCCCeEEEECCC
Confidence 2 2346667777888877666543
No 405
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.74 E-value=0.00012 Score=51.65 Aligned_cols=58 Identities=16% Similarity=0.075 Sum_probs=35.5
Q ss_pred EEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027824 61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTD 129 (218)
Q Consensus 61 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 129 (218)
.+.+.|+|++|..... ..++..+|-+|++....-.+...-+. ...+... -++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k--~~~~~~~------~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK--AGIMEIA------DIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh--hhHhhhc------CEEEEeCCC
Confidence 3568899998864222 34778899888888877332222111 1222221 389999987
No 406
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.74 E-value=3.3e-05 Score=61.71 Aligned_cols=62 Identities=21% Similarity=0.377 Sum_probs=48.1
Q ss_pred CCCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCc
Q 027824 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 72 (218)
Q Consensus 7 ~~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 72 (218)
...-...+++.|+|-|++||||+||.|......... .+.|++..-..+.++. .+.|.|.||.
T Consensus 246 ~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 246 KGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred ccccCcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCce
Confidence 344567899999999999999999999988875544 5556666666666554 5789999993
No 407
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.73 E-value=7.7e-05 Score=54.38 Aligned_cols=81 Identities=15% Similarity=0.085 Sum_probs=43.3
Q ss_pred EEEEEEEeCCCchhhhhhh--h---hhhcCCcEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 027824 61 VVKAQIWDTAGQERYRAIT--S---AYYRGAVGALLVYDVTRHATFQNVGR-WLRELREHTDPNIIVMLIGNKTDLRHLV 134 (218)
Q Consensus 61 ~~~~~i~D~~G~~~~~~~~--~---~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 134 (218)
.....+++++|......+. . ...-..+.+|.|+|+.+-.....+.. +...+.... ++++||+|+..+.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~ 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDE 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChh
Confidence 3456788888855444441 0 11224678999999976433333322 334443322 8999999986543
Q ss_pred ccCHHHHHHHHHHc
Q 027824 135 AVSTEDGKAFAEQE 148 (218)
Q Consensus 135 ~~~~~~~~~~~~~~ 148 (218)
...+..++..++.
T Consensus 158 -~~i~~~~~~ir~l 170 (178)
T PF02492_consen 158 -QKIERVREMIREL 170 (178)
T ss_dssp ---HHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHH
Confidence 1223455555553
No 408
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.71 E-value=0.00056 Score=54.63 Aligned_cols=151 Identities=19% Similarity=0.191 Sum_probs=81.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCC----------------CCCcccc-------eeEEEEEEEEE----------
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFN----------------LESKSTI-------GVEFATRSLRI---------- 57 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~----------------~~~~~t~-------~~~~~~~~~~~---------- 57 (218)
=..++|+++|+..+|||||+-.|+.+... .+.-.|. |++..-..+..
T Consensus 131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 34689999999999999999766554321 1111111 11111111110
Q ss_pred ----CCeEEEEEEEeCCCchhhhhhhhhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824 58 ----DNKVVKAQIWDTAGQERYRAITSAYY--RGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131 (218)
Q Consensus 58 ----~~~~~~~~i~D~~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 131 (218)
.+..-.+.++|..|++.|-...---+ .-.|...+++-++.+- +-...+.+.... ...+|+++|++|+|+-
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLAL---aL~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLAL---ALHVPVFVVVTKIDMC 286 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhh---hhcCcEEEEEEeeccC
Confidence 01112478999999998865432211 2356666776665431 000011122211 1467899999999985
Q ss_pred CCcccCHHHHHH---HHH--------------------------HcCCeEEEEccCCCCCHHHH
Q 027824 132 HLVAVSTEDGKA---FAE--------------------------QESLYFMETSALDATNVENA 166 (218)
Q Consensus 132 ~~~~~~~~~~~~---~~~--------------------------~~~~~~~~~Sa~~~~~v~~~ 166 (218)
....+ .+.++- +.+ +.-+++|.+|..+|.+++-+
T Consensus 287 PANiL-qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 287 PANIL-QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL 349 (641)
T ss_pred cHHHH-HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence 43211 111111 111 12357899999999997644
No 409
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.70 E-value=0.00038 Score=45.84 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=49.0
Q ss_pred EEEEc-CCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEE
Q 027824 16 LVLIG-DSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (218)
Q Consensus 16 i~l~G-~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 94 (218)
|.+.| ..|+||||+...+...... ...++.-.+. +.. +.+.++|+|+..... ....+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d~-------d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLIDL-------DPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEeC-------CCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 55666 5689999998776443221 1112221221 111 567899999864333 2366777999999988
Q ss_pred CCChhhHHHHHHHHH
Q 027824 95 VTRHATFQNVGRWLR 109 (218)
Q Consensus 95 ~~~~~s~~~~~~~~~ 109 (218)
.+ ..++..+..++.
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 445555555444
No 410
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.70 E-value=0.00023 Score=58.77 Aligned_cols=86 Identities=15% Similarity=0.021 Sum_probs=49.2
Q ss_pred EEEEEEeCCCchhhhhh----hhh--hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 027824 62 VKAQIWDTAGQERYRAI----TSA--YYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA 135 (218)
Q Consensus 62 ~~~~i~D~~G~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 135 (218)
+.+.|+||+|....... ... ..-..+.+++|+|...+. ....+...+.... + ..-+|.||.|-....
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~-i~giIlTKlD~~~~~- 255 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--G-LTGVVLTKLDGDARG- 255 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--C-CCEEEEeCccCcccc-
Confidence 46899999995432211 111 123578899999987543 2333334443222 1 246779999953311
Q ss_pred cCHHHHHHHHHHcCCeEEEEcc
Q 027824 136 VSTEDGKAFAEQESLYFMETSA 157 (218)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~Sa 157 (218)
-.+...+...++|+.++..
T Consensus 256 ---G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 256 ---GAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ---cHHHHHHHHHCcCEEEEeC
Confidence 1256667777888766555
No 411
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=9.7e-05 Score=59.23 Aligned_cols=157 Identities=17% Similarity=0.110 Sum_probs=93.9
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcC-------------------------------CCCCcccceeEEEEEEEEE
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEF-------------------------------NLESKSTIGVEFATRSLRI 57 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~ 57 (218)
+...-++++++|+..+||||+-..++.... .++.. .+-+.......+
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~--kgKtvEvGrA~F 152 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERD--KGKTVEVGRAYF 152 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhh--ccceeeeeeEEE
Confidence 345568999999999999998876543210 00111 111222222223
Q ss_pred CCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChh---hHHHH-HH-HHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824 58 DNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHA---TFQNV-GR-WLRELREHTDPNIIVMLIGNKTDLRH 132 (218)
Q Consensus 58 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~-~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~ 132 (218)
....-.+.+.|+||+..|-.....-..++|.-++|+++...+ .|+.- +. -...+.... .-...|+++||+|-+.
T Consensus 153 Ete~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 153 ETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLINKMDDPT 231 (501)
T ss_pred EecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEEeccCCc
Confidence 333446899999999988877777778899999999885432 23221 00 112222222 3346899999999753
Q ss_pred C--cccCHHH----HHHHHHHc------CCeEEEEccCCCCCHHHHHH
Q 027824 133 L--VAVSTED----GKAFAEQE------SLYFMETSALDATNVENAFT 168 (218)
Q Consensus 133 ~--~~~~~~~----~~~~~~~~------~~~~~~~Sa~~~~~v~~~~~ 168 (218)
. ....+++ ...+.+.. ...|+.+|..+|.++++...
T Consensus 232 vnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 232 VNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 2 2222333 23334432 34599999999999987653
No 412
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.67 E-value=0.00021 Score=49.86 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=61.7
Q ss_pred EEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECC
Q 027824 17 VLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT 96 (218)
Q Consensus 17 ~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 96 (218)
+.-|..|+|||++.-.+...-. .....+.-.+.... .....+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~~---~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADLG---LANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCCC---CCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 4567889999999776533211 11111111111110 01111678999999853 333356788899999999986
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027824 97 RHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 131 (218)
Q Consensus 97 ~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 131 (218)
. .++..+...+..+.... ...++.+|+|+.+..
T Consensus 78 ~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 P-TSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred h-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 3 44544444444444332 345788999999753
No 413
>PRK10867 signal recognition particle protein; Provisional
Probab=97.64 E-value=0.00045 Score=57.12 Aligned_cols=86 Identities=16% Similarity=0.015 Sum_probs=47.8
Q ss_pred EEEEEEeCCCchhhhh----hhhhh--hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 027824 62 VKAQIWDTAGQERYRA----ITSAY--YRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA 135 (218)
Q Consensus 62 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 135 (218)
+.+.|+||+|...... ....+ .-..+.+++|+|...+. ........+.... + ..-+|.||.|-....
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~-i~giIlTKlD~~~rg- 256 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--G-LTGVILTKLDGDARG- 256 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--C-CCEEEEeCccCcccc-
Confidence 5689999999542211 11111 12567789999987542 2222233333211 1 235677999963311
Q ss_pred cCHHHHHHHHHHcCCeEEEEcc
Q 027824 136 VSTEDGKAFAEQESLYFMETSA 157 (218)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~Sa 157 (218)
=.+.......++|+.++..
T Consensus 257 ---G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 257 ---GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ---cHHHHHHHHHCcCEEEEeC
Confidence 1255666677888766555
No 414
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.00074 Score=55.59 Aligned_cols=135 Identities=16% Similarity=0.082 Sum_probs=71.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCC---Cccc--------------------ceeEEEEEEEE-------ECCeEE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLE---SKST--------------------IGVEFATRSLR-------IDNKVV 62 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~---~~~t--------------------~~~~~~~~~~~-------~~~~~~ 62 (218)
.-.|+++|+.|+||||++..|.+...... .... .++.+....-. ..-...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 45899999999999999998765321000 0000 01111000000 001123
Q ss_pred EEEEEeCCCchhhhh----hhhhhh--cCCcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 027824 63 KAQIWDTAGQERYRA----ITSAYY--RGAVGALLVYDVTR-HATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA 135 (218)
Q Consensus 63 ~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 135 (218)
.+.++||+|...... ....+. ....-.++|+|++. ...+. .++..+.. --+-=+|+||.|-...
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~---~~~~~f~~----~~~~~~I~TKlDEt~~-- 341 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD---EVISAYQG----HGIHGCIITKVDEAAS-- 341 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH---HHHHHhcC----CCCCEEEEEeeeCCCC--
Confidence 578999999543221 122221 22345788999884 33333 33333322 1234688999997442
Q ss_pred cCHHHHHHHHHHcCCeEEEEccC
Q 027824 136 VSTEDGKAFAEQESLYFMETSAL 158 (218)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~Sa~ 158 (218)
.=.+..++...+.++..++.-
T Consensus 342 --~G~~l~~~~~~~lPi~yvt~G 362 (420)
T PRK14721 342 --LGIALDAVIRRKLVLHYVTNG 362 (420)
T ss_pred --ccHHHHHHHHhCCCEEEEECC
Confidence 223566677788887666643
No 415
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.64 E-value=0.00056 Score=47.39 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcC
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEF 38 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~ 38 (218)
.--+++.|++|+|||+|++.+.....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34689999999999999999987554
No 416
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.62 E-value=0.00048 Score=57.09 Aligned_cols=137 Identities=18% Similarity=0.072 Sum_probs=72.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCC----------CCCcc-----------cceeEEEEEEEEE-----------C
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFN----------LESKS-----------TIGVEFATRSLRI-----------D 58 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~----------~~~~~-----------t~~~~~~~~~~~~-----------~ 58 (218)
..+..|+++|.+|+||||++..|...... ..+.+ ..+..+....... .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 34678999999999999999877432110 00000 0112221110000 0
Q ss_pred CeEEEEEEEeCCCchhhhhhh----h--hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824 59 NKVVKAQIWDTAGQERYRAIT----S--AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132 (218)
Q Consensus 59 ~~~~~~~i~D~~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 132 (218)
.....+.|+||+|........ . .....+|.+++|+|++... ........+.... ...-+|+||.|...
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a 246 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTA 246 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCC
Confidence 011367999999965432211 1 1133678899999987652 1112223332211 12367789999643
Q ss_pred CcccCHHHHHHHHHHcCCeEEEEcc
Q 027824 133 LVAVSTEDGKAFAEQESLYFMETSA 157 (218)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (218)
.- =.+.......+.|+.+++.
T Consensus 247 ~~----G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 247 KG----GGALSAVAETGAPIKFIGT 267 (437)
T ss_pred cc----cHHHHHHHHHCcCEEEEec
Confidence 11 1245556667888666554
No 417
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.0015 Score=53.12 Aligned_cols=136 Identities=16% Similarity=0.131 Sum_probs=73.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCC---------CCc------------ccceeEEEEEEE--E----E---C-CeE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNL---------ESK------------STIGVEFATRSL--R----I---D-NKV 61 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~---------~~~------------~t~~~~~~~~~~--~----~---~-~~~ 61 (218)
...|+++|+.|+||||++..|....... ... ...++.+....- . + . ...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3689999999999999999885421100 000 011111111000 0 0 0 113
Q ss_pred EEEEEEeCCCchhhhh----hhhhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 027824 62 VKAQIWDTAGQERYRA----ITSAYY--RGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVA 135 (218)
Q Consensus 62 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 135 (218)
+.+.|+||+|...... -...++ ...+.+++|+|++-.. ..+......+... .+--+|+||.|-...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~idglI~TKLDET~k-- 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETAS-- 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----CCCEEEEEcccCCCC--
Confidence 5678999999643221 112222 2456788899876332 2223334444321 224688999997542
Q ss_pred cCHHHHHHHHHHcCCeEEEEccC
Q 027824 136 VSTEDGKAFAEQESLYFMETSAL 158 (218)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~Sa~ 158 (218)
.=.+..++...++|+..++.-
T Consensus 393 --~G~iLni~~~~~lPIsyit~G 413 (436)
T PRK11889 393 --SGELLKIPAVSSAPIVLMTDG 413 (436)
T ss_pred --ccHHHHHHHHHCcCEEEEeCC
Confidence 123556677778887666553
No 418
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.58 E-value=0.00099 Score=42.81 Aligned_cols=69 Identities=19% Similarity=0.158 Sum_probs=44.8
Q ss_pred EEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhh-hhhhhcCCcEEEEEEE
Q 027824 16 LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAI-TSAYYRGAVGALLVYD 94 (218)
Q Consensus 16 i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d 94 (218)
+++.|..|+||||+...+........+ ...- ++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~-~v~~---------~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK-RVLL---------ID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-eEEE---------EC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999887654322111 1111 11 5689999986433321 2445667898999988
Q ss_pred CCCh
Q 027824 95 VTRH 98 (218)
Q Consensus 95 ~~~~ 98 (218)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7653
No 419
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.52 E-value=0.0012 Score=54.69 Aligned_cols=88 Identities=15% Similarity=0.079 Sum_probs=50.2
Q ss_pred EEEEEEeCCCchhhh----hhhhhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 027824 62 VKAQIWDTAGQERYR----AITSAYYR---GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134 (218)
Q Consensus 62 ~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 134 (218)
+.+.|+|++|..... .....++. ...-+++|++.+-.. ..+...+..+... + +--+|.||.|-...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~---~-~~~vI~TKlDet~~- 372 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL---P-LDGLIFTKLDETSS- 372 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC---C-CCEEEEeccccccc-
Confidence 567999999964332 12223333 234567888886432 2222223333221 1 23688999997432
Q ss_pred ccCHHHHHHHHHHcCCeEEEEccCC
Q 027824 135 AVSTEDGKAFAEQESLYFMETSALD 159 (218)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (218)
.-.+..++...++++..++.-.
T Consensus 373 ---~G~i~~~~~~~~lPv~yit~Gq 394 (424)
T PRK05703 373 ---LGSILSLLIESGLPISYLTNGQ 394 (424)
T ss_pred ---ccHHHHHHHHHCCCEEEEeCCC
Confidence 2246777788899877666544
No 420
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=97.50 E-value=0.0014 Score=49.89 Aligned_cols=120 Identities=19% Similarity=0.212 Sum_probs=78.0
Q ss_pred eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCCh-------hhHHHHHHHHHHHHhhcC----CCCcEEEEEeCC
Q 027824 60 KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH-------ATFQNVGRWLRELREHTD----PNIIVMLIGNKT 128 (218)
Q Consensus 60 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~ 128 (218)
..+.++.+|.+|+.+.+.-|..++..+-++|||+..+.- .+-+.+++-+..+...=. ..+.+|+.+||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 346789999999999999999999999999999988742 122334443333322211 456799999999
Q ss_pred CCCCC----------------------------cccC--HHHHHHHHHH-------------cCCeEEEEccCCCCCHHH
Q 027824 129 DLRHL----------------------------VAVS--TEDGKAFAEQ-------------ESLYFMETSALDATNVEN 165 (218)
Q Consensus 129 Dl~~~----------------------------~~~~--~~~~~~~~~~-------------~~~~~~~~Sa~~~~~v~~ 165 (218)
|+-.+ ...+ ...++-+.+. +-+.+-++.|.+-+++..
T Consensus 280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr 359 (379)
T KOG0099|consen 280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 359 (379)
T ss_pred HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence 98310 0001 1111222221 124456788899999999
Q ss_pred HHHHHHHHHHHHHh
Q 027824 166 AFTEVLTQIYKIVS 179 (218)
Q Consensus 166 ~~~~i~~~i~~~~~ 179 (218)
+|+..-.-+.+..-
T Consensus 360 VFnDcrdiIqr~hl 373 (379)
T KOG0099|consen 360 VFNDCRDIIQRMHL 373 (379)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988776666543
No 421
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.49 E-value=0.00088 Score=49.34 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=59.9
Q ss_pred EEEEEeCCCchhhhh---hhhhhh---c---CCcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027824 63 KAQIWDTAGQERYRA---ITSAYY---R---GAVGALLVYDVTR-HATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRH 132 (218)
Q Consensus 63 ~~~i~D~~G~~~~~~---~~~~~~---~---~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 132 (218)
.+.++|+||+-+... ..+.+. + -.-+++|+++..= -++..-+...+..+.....-..|-|=|++|.|+..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 467999999754322 222222 1 1224556666431 12333344445555554446789999999999854
Q ss_pred CcccCHHH------------------------HHHH-------HHHcC-CeEEEEccCCCCCHHHHHHHHHHHH
Q 027824 133 LVAVSTED------------------------GKAF-------AEQES-LYFMETSALDATNVENAFTEVLTQI 174 (218)
Q Consensus 133 ~~~~~~~~------------------------~~~~-------~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~i 174 (218)
+. +.++ ..++ ...++ +.|+.....+.+.++.++..|-..+
T Consensus 179 ~~--~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 179 DK--NKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred hh--hHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 31 1111 1111 11223 3577778888888888887775544
No 422
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.0018 Score=52.44 Aligned_cols=138 Identities=19% Similarity=0.155 Sum_probs=71.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCcCC---------CCCc------------ccceeEEEEEEE--EE-------C-Ce
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKNEFN---------LESK------------STIGVEFATRSL--RI-------D-NK 60 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~~~~---------~~~~------------~t~~~~~~~~~~--~~-------~-~~ 60 (218)
..-.|+++|+.|+||||++.++...... .... ...+..+....- .+ . ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 3557899999999999999987542110 0000 001111111000 00 0 02
Q ss_pred EEEEEEEeCCCchhhhhh----hhhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 027824 61 VVKAQIWDTAGQERYRAI----TSAYYR--GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLV 134 (218)
Q Consensus 61 ~~~~~i~D~~G~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 134 (218)
.+.+.|+||+|....... ...+.. ..+.+++|.+++. ....+...+..+. .-.+--+|+||.|-...
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~----~l~i~glI~TKLDET~~- 357 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLA----EIPIDGFIITKMDETTR- 357 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcC----cCCCCEEEEEcccCCCC-
Confidence 357799999997433221 122222 3456667776632 2222322233222 11234678999997432
Q ss_pred ccCHHHHHHHHHHcCCeEEEEccCC
Q 027824 135 AVSTEDGKAFAEQESLYFMETSALD 159 (218)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (218)
.=.+..++...+.|+..++.-.
T Consensus 358 ---~G~~Lsv~~~tglPIsylt~GQ 379 (407)
T PRK12726 358 ---IGDLYTVMQETNLPVLYMTDGQ 379 (407)
T ss_pred ---ccHHHHHHHHHCCCEEEEecCC
Confidence 1235566777888877666543
No 423
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.47 E-value=0.00012 Score=50.22 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCc
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~ 37 (218)
--+++.|++|+|||++++++....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHh
Confidence 347899999999999999998754
No 424
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.46 E-value=0.0028 Score=51.03 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=55.0
Q ss_pred EEEEEEeCCCchhhhhhhhhhh-------cCCcEEEEEEECCChhh--H-------H-------------HHHH-HHHHH
Q 027824 62 VKAQIWDTAGQERYRAITSAYY-------RGAVGALLVYDVTRHAT--F-------Q-------------NVGR-WLREL 111 (218)
Q Consensus 62 ~~~~i~D~~G~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~s--~-------~-------------~~~~-~~~~i 111 (218)
+...++++.|......+...+. -..|++|-|+|+.+-.. + . .+.. +...+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4567889999766555544431 14578999999874211 0 0 0111 12333
Q ss_pred HhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cC--CeEEEEccCCCCCHHHHHHH
Q 027824 112 REHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-ES--LYFMETSALDATNVENAFTE 169 (218)
Q Consensus 112 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~--~~~~~~Sa~~~~~v~~~~~~ 169 (218)
... =+|++||+|+..+.++ +..++..+. ++ ++++++. ........+|..
T Consensus 173 ~~A------D~IvlnK~Dl~~~~~l--~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~~ 224 (341)
T TIGR02475 173 ACA------DLVILNKADLLDAAGL--ARVRAEIAAELPRAVKIVEAS-HGEVDARVLLGL 224 (341)
T ss_pred HhC------CEEEEeccccCCHHHH--HHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhCC
Confidence 322 3899999999764432 334555554 33 3566554 344666666653
No 425
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.44 E-value=0.00072 Score=46.29 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEcCCCCChHHHHHHHhcCc
Q 027824 16 LVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 16 i~l~G~~~~GKssli~~l~~~~ 37 (218)
|++.|++|+|||++++.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999987643
No 426
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.43 E-value=0.00094 Score=44.28 Aligned_cols=100 Identities=17% Similarity=0.123 Sum_probs=57.7
Q ss_pred EcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCCh
Q 027824 19 IGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH 98 (218)
Q Consensus 19 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 98 (218)
=+..|+||||+...|-..-.......+.-.+.... ... .+.|+|+|+.... .....+..+|.++++.+.+ .
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~-----~~~-D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~ 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ-----FGD-DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-L 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC-----CCC-CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-h
Confidence 35567999998876644322110112221221111 111 5789999986433 2344667899999988765 4
Q ss_pred hhHHHHHHHHHHHHhhcCC-CCcEEEEEeC
Q 027824 99 ATFQNVGRWLRELREHTDP-NIIVMLIGNK 127 (218)
Q Consensus 99 ~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK 127 (218)
.++..+..++..+...... ...+.+|+|+
T Consensus 77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4566666666666554433 4567777775
No 427
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.41 E-value=0.00017 Score=56.05 Aligned_cols=61 Identities=21% Similarity=0.376 Sum_probs=39.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCcCCC----CCcccceeEEEEEE-EEECCeEEEEEEEeCCCc
Q 027824 11 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNL----ESKSTIGVEFATRS-LRIDNKVVKAQIWDTAGQ 72 (218)
Q Consensus 11 ~~~~~i~l~G~~~~GKssli~~l~~~~~~~----~~~~t~~~~~~~~~-~~~~~~~~~~~i~D~~G~ 72 (218)
+..++++|+|-|++|||||+|.+....... ...+-.|++..+.. +.+.+.. .+.++||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 456899999999999999999875543211 11133344444443 4444433 3789999993
No 428
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.38 E-value=0.0012 Score=53.48 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=80.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCc---ccceeEEEEE-----------------EEEE----------CCeEE
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESK---STIGVEFATR-----------------SLRI----------DNKVV 62 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~---~t~~~~~~~~-----------------~~~~----------~~~~~ 62 (218)
.-.|+++||.||||||-+-+|-......... .-+++|.++. .+.. .-.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 5678999999999999998876544411111 1122221111 0000 11234
Q ss_pred EEEEEeCCCchhhhhhh----hhhhcC--CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 027824 63 KAQIWDTAGQERYRAIT----SAYYRG--AVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV 136 (218)
Q Consensus 63 ~~~i~D~~G~~~~~~~~----~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 136 (218)
.+.+.||.|.+.++... ..++.. ..-+.+|++++... +.+.+.+..+.... .-=+|+||.|-..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~~~----i~~~I~TKlDET~---- 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSLFP----IDGLIFTKLDETT---- 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhccCC----cceeEEEcccccC----
Confidence 68999999976554432 233322 23366777776542 33333344443221 1257889999643
Q ss_pred CHHHHHHHHHHcCCeEEEEccCCC--CCHHHH-HHHHHHHHHHHH
Q 027824 137 STEDGKAFAEQESLYFMETSALDA--TNVENA-FTEVLTQIYKIV 178 (218)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~Sa~~~--~~v~~~-~~~i~~~i~~~~ 178 (218)
..=..-..+.+.+.|+-.++--.+ +++... -.+|++.+....
T Consensus 353 s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~ 397 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTF 397 (407)
T ss_pred chhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccc
Confidence 112244555666777555454333 333322 345555555433
No 429
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.37 E-value=0.0029 Score=47.50 Aligned_cols=60 Identities=23% Similarity=0.246 Sum_probs=35.9
Q ss_pred hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 027824 82 YYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL 150 (218)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 150 (218)
..+++|.+|+|+|.+-+ ++...+.. .++..... -.++.+|+||.|-. +......+...+.
T Consensus 152 ~~~~vD~vivVvDpS~~-sl~taeri-~~L~~elg-~k~i~~V~NKv~e~------e~~~~~~~~~~~~ 211 (255)
T COG3640 152 TIEGVDLVIVVVDPSYK-SLRTAERI-KELAEELG-IKRIFVVLNKVDEE------EELLRELAEELGL 211 (255)
T ss_pred cccCCCEEEEEeCCcHH-HHHHHHHH-HHHHHHhC-CceEEEEEeeccch------hHHHHhhhhccCC
Confidence 35689999999998753 44333222 22222211 27899999999853 2344555555554
No 430
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.34 E-value=0.012 Score=49.39 Aligned_cols=134 Identities=19% Similarity=0.170 Sum_probs=68.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCC---Ccccc--------------------eeEEEEEEEE-------ECCeEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLE---SKSTI--------------------GVEFATRSLR-------IDNKVVK 63 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~---~~~t~--------------------~~~~~~~~~~-------~~~~~~~ 63 (218)
--++++|+.|+||||++..|.+...... ..... +..+....-. ..-....
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 4689999999999999998875321110 00000 0000000000 0011235
Q ss_pred EEEEeCCCchhhhhh---hhhhhcC---CcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 027824 64 AQIWDTAGQERYRAI---TSAYYRG---AVGALLVYDVTRH-ATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV 136 (218)
Q Consensus 64 ~~i~D~~G~~~~~~~---~~~~~~~---~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 136 (218)
+.++|++|....... ....+.. ..-.++|+|.+.. ..+.. ....+.. ...--+|+||.|-..
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~---i~~~f~~----~~~~g~IlTKlDet~---- 405 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNE---VVQAYRG----PGLAGCILTKLDEAA---- 405 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHH---HHHHhcc----CCCCEEEEeCCCCcc----
Confidence 789999994432211 1111211 2236788888743 33322 2222221 223467789999643
Q ss_pred CHHHHHHHHHHcCCeEEEEccC
Q 027824 137 STEDGKAFAEQESLYFMETSAL 158 (218)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~Sa~ 158 (218)
..-.+..+....++++..++.-
T Consensus 406 ~~G~~l~i~~~~~lPI~yvt~G 427 (484)
T PRK06995 406 SLGGALDVVIRYKLPLHYVSNG 427 (484)
T ss_pred cchHHHHHHHHHCCCeEEEecC
Confidence 2234566777788887666543
No 431
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=7.1e-05 Score=56.59 Aligned_cols=163 Identities=13% Similarity=0.156 Sum_probs=91.3
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECC-eEEEEEEEeCCCchhhhhhhhhhhc----
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDN-KVVKAQIWDTAGQERYRAITSAYYR---- 84 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~---- 84 (218)
......|++.|+. |+|++|++.+...-.. ..++...++......-.+ ..--..+|+.+|......+..--++
T Consensus 42 ~~~E~~I~~~Gn~--~~tt~I~~~FdR~e~~-~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l 118 (363)
T KOG3929|consen 42 EKFEFFIGSKGNG--GKTTIILRCFDRDEPP-KPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL 118 (363)
T ss_pred ccceeEEEEecCC--ceeEeehhhcCcccCC-CCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence 3456789999987 5599999887755422 235555555443332222 2223579999997665554432221
Q ss_pred CCcEEEEEEECCChhhH-HHHHHHHHHHH--------------------------h-----------hcCCCCcEEEEEe
Q 027824 85 GAVGALLVYDVTRHATF-QNVGRWLRELR--------------------------E-----------HTDPNIIVMLIGN 126 (218)
Q Consensus 85 ~~d~~i~v~d~~~~~s~-~~~~~~~~~i~--------------------------~-----------~~~~~~p~ivv~n 126 (218)
..-.+|++.|++++..+ ..++..+..+. . .....+|+++|+.
T Consensus 119 ~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgs 198 (363)
T KOG3929|consen 119 RTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGS 198 (363)
T ss_pred hhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEecc
Confidence 12348999999987532 22221111111 1 0123589999999
Q ss_pred CCCCCCCcc-----cCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 027824 127 KTDLRHLVA-----VSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIY 175 (218)
Q Consensus 127 K~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~i~ 175 (218)
|.|.-...+ -...-.+..|..+|+.....|++-..-.+-+.+.+.+..+
T Consensus 199 KYDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i~HlaF 252 (363)
T KOG3929|consen 199 KYDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINHLAF 252 (363)
T ss_pred chhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhHHHhhc
Confidence 999744322 1122244556667877666677654444444444444443
No 432
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.0022 Score=52.63 Aligned_cols=137 Identities=18% Similarity=0.225 Sum_probs=71.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCC----------CC------------cccceeEEEEEE-E-----EECCeEEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNL----------ES------------KSTIGVEFATRS-L-----RIDNKVVKAQ 65 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~----------~~------------~~t~~~~~~~~~-~-----~~~~~~~~~~ 65 (218)
.-|+++|++||||||++.+|....... .. ....+.+..... . .+....+.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 468899999999999999886422100 00 001111111100 0 0011234678
Q ss_pred EEeCCCchhhh----hhhhhhhc-----CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 027824 66 IWDTAGQERYR----AITSAYYR-----GAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV 136 (218)
Q Consensus 66 i~D~~G~~~~~----~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 136 (218)
++||+|..... ..+..+++ ...-+++|+|++... +.+......+... -+--+|+||.|-....
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~----~~~glIlTKLDEt~~~-- 375 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL----NYRRILLTKLDEADFL-- 375 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC----CCCEEEEEcccCCCCc--
Confidence 99999964221 11122221 233578899987653 1222223333211 2246889999974321
Q ss_pred CHHHHHHHHHHcCCeEEEEccCCC
Q 027824 137 STEDGKAFAEQESLYFMETSALDA 160 (218)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (218)
=.+..++...+.|+..++.-.+
T Consensus 376 --G~il~i~~~~~lPI~ylt~GQ~ 397 (432)
T PRK12724 376 --GSFLELADTYSKSFTYLSVGQE 397 (432)
T ss_pred --cHHHHHHHHHCCCEEEEecCCC
Confidence 2355666777888766665443
No 433
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.31 E-value=0.0002 Score=48.48 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~ 36 (218)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999664
No 434
>PRK08118 topology modulation protein; Reviewed
Probab=97.31 E-value=0.0002 Score=51.62 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCc
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~ 37 (218)
.+|+|+|++|||||||...|....
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999987643
No 435
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.29 E-value=0.0002 Score=52.11 Aligned_cols=23 Identities=30% Similarity=0.757 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~ 36 (218)
.||+++|+||+||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 436
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.27 E-value=0.0015 Score=45.10 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcC
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEF 38 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~ 38 (218)
.|++.|+.|+|||||++.+.....
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999987643
No 437
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.26 E-value=0.0021 Score=50.21 Aligned_cols=106 Identities=15% Similarity=0.224 Sum_probs=61.7
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhh-------------
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERY------------- 75 (218)
Q Consensus 9 ~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------------- 75 (218)
+......++++|+++.|||+++++|....-.. ..+. ...+.+.+..+|.....
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDED-------------AERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCC-------------CccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 44556789999999999999999998755321 1111 11234555555542111
Q ss_pred -----------hhhhhhhhcCCcEEEEEEECCCh---hhHHHHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 027824 76 -----------RAITSAYYRGAVGALLVYDVTRH---ATFQNVGRWLRELREHTD-PNIIVMLIGNKT 128 (218)
Q Consensus 76 -----------~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~ 128 (218)
.......++...+=++++|--.- -+...-+..+..+....+ -.+|+|.+|+.-
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 11122345666777888885321 122333444444444433 679999999874
No 438
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.26 E-value=0.0021 Score=54.50 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~ 37 (218)
-+++.||+||||||.++.|....
T Consensus 47 iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46778999999999998887643
No 439
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.26 E-value=0.0066 Score=53.54 Aligned_cols=138 Identities=17% Similarity=0.117 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCC---CcccceeEEEEE---------------EEE-E-----------CCeEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLE---SKSTIGVEFATR---------------SLR-I-----------DNKVVK 63 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~---~~~t~~~~~~~~---------------~~~-~-----------~~~~~~ 63 (218)
--|+++|+.|+||||.+.+|........ .....+.+.+.. .+. . ....+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 4689999999999999998875431111 000011111000 000 0 012235
Q ss_pred EEEEeCCCchhhhh----hhhhh--hcCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 027824 64 AQIWDTAGQERYRA----ITSAY--YRGAVGALLVYDVTRH-ATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV 136 (218)
Q Consensus 64 ~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 136 (218)
+.|+||+|...... ..... ....+-+++|+|.+.. +.+..+. ..+...... -+-=+|+||.|-...-
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~~~-~i~glIlTKLDEt~~~-- 339 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGAGE-DVDGCIITKLDEATHL-- 339 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhcccC-CCCEEEEeccCCCCCc--
Confidence 78999999443221 11111 1234568899998753 3444432 222221101 1236789999975421
Q ss_pred CHHHHHHHHHHcCCeEEEEccCC
Q 027824 137 STEDGKAFAEQESLYFMETSALD 159 (218)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~Sa~~ 159 (218)
=.+..+....++|+..++.-.
T Consensus 340 --G~iL~i~~~~~lPI~yit~GQ 360 (767)
T PRK14723 340 --GPALDTVIRHRLPVHYVSTGQ 360 (767)
T ss_pred --cHHHHHHHHHCCCeEEEecCC
Confidence 235566777788877666433
No 440
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.24 E-value=0.0039 Score=45.34 Aligned_cols=85 Identities=25% Similarity=0.221 Sum_probs=58.9
Q ss_pred eEEEEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHH
Q 027824 60 KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTE 139 (218)
Q Consensus 60 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 139 (218)
..+.+.|+|+|+.... .....+..+|.+++++..+. .+...+..++..+.. .+.|+.+|+|+.|.... ...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~---~~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRH---FGIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHH---cCCCEEEEEeCCCCCcc---hHH
Confidence 4567899999976422 23455688999999999874 355556666665554 34678899999997432 235
Q ss_pred HHHHHHHHcCCeEE
Q 027824 140 DGKAFAEQESLYFM 153 (218)
Q Consensus 140 ~~~~~~~~~~~~~~ 153 (218)
+.++++.+.+++++
T Consensus 162 ~~~~~~~~~~~~vl 175 (179)
T cd03110 162 EIEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHHcCCCeE
Confidence 67778888888765
No 441
>PRK07261 topology modulation protein; Provisional
Probab=97.23 E-value=0.00027 Score=51.16 Aligned_cols=22 Identities=41% Similarity=0.735 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~ 36 (218)
+|+|+|++|+|||||.+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998653
No 442
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.22 E-value=0.00026 Score=49.40 Aligned_cols=20 Identities=45% Similarity=0.777 Sum_probs=18.5
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 027824 16 LVLIGDSGVGKSNLLSRFTK 35 (218)
Q Consensus 16 i~l~G~~~~GKssli~~l~~ 35 (218)
|+++|+|||||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 443
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.20 E-value=0.002 Score=50.00 Aligned_cols=135 Identities=16% Similarity=0.106 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCC-----------CC----------CcccceeEEEEEEE--E-------E-CCeEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFN-----------LE----------SKSTIGVEFATRSL--R-------I-DNKVV 62 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~-----------~~----------~~~t~~~~~~~~~~--~-------~-~~~~~ 62 (218)
-+|+++|++|+||||++..+...... .. +....++++....- . + ....+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 58999999999999999877543110 00 00111222211000 0 0 11235
Q ss_pred EEEEEeCCCchhhhh----hhhhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc
Q 027824 63 KAQIWDTAGQERYRA----ITSAYY--RGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAV 136 (218)
Q Consensus 63 ~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 136 (218)
.+.|+|++|...... .+..++ -..+-+++|+|++... +.+..+...+.. -.+--+|+||.|-....
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet~~~-- 227 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETASS-- 227 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCCCCc--
Confidence 788999999653221 111222 2456689999986421 223333444432 12346889999975421
Q ss_pred CHHHHHHHHHHcCCeEEEEccC
Q 027824 137 STEDGKAFAEQESLYFMETSAL 158 (218)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~Sa~ 158 (218)
=.+..++...+.|+..++.-
T Consensus 228 --G~~l~~~~~~~~Pi~~it~G 247 (270)
T PRK06731 228 --GELLKIPAVSSAPIVLMTDG 247 (270)
T ss_pred --cHHHHHHHHHCcCEEEEeCC
Confidence 23556677778887666553
No 444
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.17 E-value=0.0057 Score=44.52 Aligned_cols=88 Identities=20% Similarity=0.139 Sum_probs=46.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEE--EeCCCch-hhhhhhhhhhcCCcEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQI--WDTAGQE-RYRAITSAYYRGAVGAL 90 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i--~D~~G~~-~~~~~~~~~~~~~d~~i 90 (218)
=.++++|+.|+|||||++.+.+-..+ +.|. +.+++..+.+.. .+.+|.. ..-.+...++.+.+.++
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~------i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIP-----NGDN------DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC-----CCcE------EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 36889999999999999998875432 1111 111221111111 1134433 33345566677776444
Q ss_pred EE--EECCChhhHHHHHHHHHHHH
Q 027824 91 LV--YDVTRHATFQNVGRWLRELR 112 (218)
Q Consensus 91 ~v--~d~~~~~s~~~~~~~~~~i~ 112 (218)
+= .+.-|+.+.+.+..++..+.
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHH
Confidence 41 11224555566666666554
No 445
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.17 E-value=0.01 Score=41.67 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~ 37 (218)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999997754
No 446
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.13 E-value=0.00052 Score=40.48 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 027824 15 KLVLIGDSGVGKSNLLSRFTK 35 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~ 35 (218)
..++.|+.|+|||||++.+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998754
No 447
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.013 Score=47.97 Aligned_cols=136 Identities=13% Similarity=0.057 Sum_probs=72.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCC-----CCc--------------------ccceeEEEEEEEE-------ECCe
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNL-----ESK--------------------STIGVEFATRSLR-------IDNK 60 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~-----~~~--------------------~t~~~~~~~~~~~-------~~~~ 60 (218)
...|+++|++|+||||.+.++....... ... ...++.+...... ....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 4589999999999999998875421100 000 0012222111100 0112
Q ss_pred EEEEEEEeCCCchhhhh----hhhhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 027824 61 VVKAQIWDTAGQERYRA----ITSAYYRG---AVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHL 133 (218)
Q Consensus 61 ~~~~~i~D~~G~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 133 (218)
.+.+.|+||+|...... -...++.. ..-.++|+|++... ..+...+..+.. -.+-=+|+||.|-...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~----~~~~~~I~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSP----FSYKTVIFTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcC----CCCCEEEEEeccCCCc
Confidence 35689999999653321 11122221 22588999998652 223333333321 1234688999996442
Q ss_pred cccCHHHHHHHHHHcCCeEEEEccC
Q 027824 134 VAVSTEDGKAFAEQESLYFMETSAL 158 (218)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (218)
. =.+..++...+.|+..++.-
T Consensus 328 ~----G~~l~~~~~~~~Pi~yit~G 348 (388)
T PRK12723 328 V----GNLISLIYEMRKEVSYVTDG 348 (388)
T ss_pred c----hHHHHHHHHHCCCEEEEeCC
Confidence 1 23556666778887655543
No 448
>PRK10646 ADP-binding protein; Provisional
Probab=97.09 E-value=0.0047 Score=43.62 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=25.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEE
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEF 50 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~ 50 (218)
-|++-|+-|+|||||++.+...--......+.+++.
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SPTFtl 65 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTYTL 65 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCCCCCCCCEee
Confidence 488999999999999999976543333333333443
No 449
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.07 E-value=0.00035 Score=50.10 Aligned_cols=22 Identities=23% Similarity=0.596 Sum_probs=17.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~ 36 (218)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999754
No 450
>PRK04195 replication factor C large subunit; Provisional
Probab=97.07 E-value=0.009 Score=50.57 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCc
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~ 37 (218)
.--+++.|++|+||||+++.+.+..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999997754
No 451
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.00047 Score=52.14 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=19.4
Q ss_pred EEEEcCCCCChHHHHHHHhcCc
Q 027824 16 LVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 16 i~l~G~~~~GKssli~~l~~~~ 37 (218)
|.++|++|||||||++-+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999887644
No 452
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.05 E-value=0.0076 Score=50.65 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~ 36 (218)
-.++.|++||||||-+.-|...
T Consensus 112 iLLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHh
Confidence 4678899999999999888653
No 453
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.04 E-value=0.00062 Score=41.35 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 027824 16 LVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 16 i~l~G~~~~GKssli~~l~~~ 36 (218)
|.+.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999998764
No 454
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.00036 Score=50.39 Aligned_cols=24 Identities=42% Similarity=0.708 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCc
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~ 37 (218)
.-+++.||+|+|||||++.|+...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999998866
No 455
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.0022 Score=51.50 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=50.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCc--------------CCCC-------CcccceeEEEEEEEE-------------EC
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNE--------------FNLE-------SKSTIGVEFATRSLR-------------ID 58 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~--------------~~~~-------~~~t~~~~~~~~~~~-------------~~ 58 (218)
+--|+++|-.|+||||.+-+|.... |..- ...-.++.++..... +.
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK 180 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK 180 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence 4568999999999999988764311 1100 001112333222111 12
Q ss_pred CeEEEEEEEeCCCchhhh-hhhhh-----hhcCCcEEEEEEECCChhh
Q 027824 59 NKVVKAQIWDTAGQERYR-AITSA-----YYRGAVGALLVYDVTRHAT 100 (218)
Q Consensus 59 ~~~~~~~i~D~~G~~~~~-~~~~~-----~~~~~d~~i~v~d~~~~~s 100 (218)
.+++.+.|.||+|...-. ++... -.-+.|-+|+|.|++-+..
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa 228 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA 228 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence 455789999999953221 22111 1235788999999986643
No 456
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.02 E-value=0.0006 Score=51.79 Aligned_cols=33 Identities=27% Similarity=0.536 Sum_probs=26.2
Q ss_pred CCCCCCCceeeEEEEEcCCCCChHHHHHHHhcC
Q 027824 4 YKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 4 ~~~~~~~~~~~~i~l~G~~~~GKssli~~l~~~ 36 (218)
+....-.+..++++|+|++|||||+|+..++..
T Consensus 4 F~~~~l~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 4 FDRNSLLKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CChhHhcCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 334444566799999999999999999888764
No 457
>PF05729 NACHT: NACHT domain
Probab=96.97 E-value=0.0033 Score=44.74 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=20.4
Q ss_pred EEEEcCCCCChHHHHHHHhcCcCC
Q 027824 16 LVLIGDSGVGKSNLLSRFTKNEFN 39 (218)
Q Consensus 16 i~l~G~~~~GKssli~~l~~~~~~ 39 (218)
++|.|++|+|||+++.++...-..
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHh
Confidence 789999999999999998765443
No 458
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.94 E-value=0.0046 Score=43.16 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEF 50 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~ 50 (218)
--|++-|+-|+|||||.+.+...--......+++++.
T Consensus 26 ~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtl 62 (149)
T COG0802 26 DVVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTL 62 (149)
T ss_pred CEEEEEcCCcCChHHHHHHHHHHcCCCCcccCCCeee
Confidence 4688999999999999999876654344444444443
No 459
>PRK06217 hypothetical protein; Validated
Probab=96.94 E-value=0.00078 Score=49.31 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~ 36 (218)
.+|+|+|.+|||||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998754
No 460
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.93 E-value=0.0016 Score=48.64 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~~ 36 (218)
...-|+|+|++|||||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3455888999999999999999754
No 461
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.92 E-value=0.00066 Score=49.83 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCc
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~ 37 (218)
.=|+|+|++|||||||+++|+...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 458999999999999999998753
No 462
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.89 E-value=0.0023 Score=47.94 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=38.6
Q ss_pred EEEEEeCCCchhhh----hhhh--hhhcCCcEEEEEEECC------ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027824 63 KAQIWDTAGQERYR----AITS--AYYRGAVGALLVYDVT------RHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL 130 (218)
Q Consensus 63 ~~~i~D~~G~~~~~----~~~~--~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 130 (218)
...++|+||+-++. +++. ..++..+.-+.++.+. +|..| +..++..+.....-..|-|=|+.|+|+
T Consensus 98 ~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~--iS~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 98 HYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKF--ISSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHH--HHHHHHHHHHHHhhcccchhhhhHhHH
Confidence 56899999975432 2221 2344466656655554 45544 333334443333345677888899998
Q ss_pred C
Q 027824 131 R 131 (218)
Q Consensus 131 ~ 131 (218)
.
T Consensus 176 ~ 176 (290)
T KOG1533|consen 176 L 176 (290)
T ss_pred H
Confidence 4
No 463
>PRK03839 putative kinase; Provisional
Probab=96.87 E-value=0.0009 Score=48.80 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~ 36 (218)
+|+++|.||+||||+.++|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988654
No 464
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.85 E-value=0.0009 Score=50.28 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~ 37 (218)
-|+++|++|||||||++-+-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999886533
No 465
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.85 E-value=0.0014 Score=48.60 Aligned_cols=23 Identities=48% Similarity=0.639 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~ 37 (218)
.++++|++|||||||++.+.+-+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 58999999999999999986543
No 466
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.84 E-value=0.0074 Score=44.77 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.5
Q ss_pred EEEEcCCCCChHHHHHHHhcCc
Q 027824 16 LVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 16 i~l~G~~~~GKssli~~l~~~~ 37 (218)
|+++|++|+||||+++.+++..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887654
No 467
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.84 E-value=0.001 Score=45.99 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~ 37 (218)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999987754
No 468
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.84 E-value=0.0011 Score=45.39 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCC
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNL 40 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~ 40 (218)
-.++++|++|+|||+++..+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 468999999999999999998766543
No 469
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.83 E-value=0.002 Score=43.78 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCc
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~ 37 (218)
--|++-|+-|+|||||++.+...-
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999887654
No 470
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.82 E-value=0.00043 Score=55.59 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=0.0
Q ss_pred CCCceeeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCC
Q 027824 8 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAG 71 (218)
Q Consensus 8 ~~~~~~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 71 (218)
......+-|.++|.|++||||+||+|-........ |-.|.+-.-..+.+.. .+-++|+||
T Consensus 302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvA-PIpGETKVWQYItLmk---rIfLIDcPG 361 (572)
T KOG2423|consen 302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVA-PIPGETKVWQYITLMK---RIFLIDCPG 361 (572)
T ss_pred ccCccceeeeeecCCCCchHHHHHHHhhccccccc-CCCCcchHHHHHHHHh---ceeEecCCC
No 471
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.82 E-value=0.0011 Score=46.14 Aligned_cols=21 Identities=57% Similarity=0.866 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 027824 16 LVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 16 i~l~G~~~~GKssli~~l~~~ 36 (218)
|+++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999764
No 472
>PRK14530 adenylate kinase; Provisional
Probab=96.81 E-value=0.0011 Score=49.89 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTK 35 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~ 35 (218)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 473
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.80 E-value=0.0012 Score=48.47 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~ 36 (218)
.|+|+|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999664
No 474
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.80 E-value=0.001 Score=45.27 Aligned_cols=21 Identities=19% Similarity=0.435 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 027824 16 LVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 16 i~l~G~~~~GKssli~~l~~~ 36 (218)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998664
No 475
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.001 Score=46.24 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.0
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhc
Q 027824 10 YDYLFKLVLIGDSGVGKSNLLSRFTK 35 (218)
Q Consensus 10 ~~~~~~i~l~G~~~~GKssli~~l~~ 35 (218)
.+...+|+|.|-||+|||||..++..
T Consensus 4 ~r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 4 ERERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence 36678999999999999999999863
No 476
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.78 E-value=0.029 Score=40.52 Aligned_cols=84 Identities=14% Similarity=0.022 Sum_probs=50.1
Q ss_pred EEEEEeCCCchhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHH
Q 027824 63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGK 142 (218)
Q Consensus 63 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 142 (218)
.+.|+|+|+..... ....+..+|.+|++++.+. .++..+..++..+... ....+.+++|+.+..... ..+...
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCcccccc--hhhHHH
Confidence 57899999864332 3345678999999988764 3444444455555442 223567889999864322 112234
Q ss_pred HHHHHcCCeEE
Q 027824 143 AFAEQESLYFM 153 (218)
Q Consensus 143 ~~~~~~~~~~~ 153 (218)
.+.+..+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 44455666654
No 477
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.77 E-value=0.0012 Score=46.06 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~ 37 (218)
.|+++|+.++|||||+..|++..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 478
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.77 E-value=0.035 Score=43.66 Aligned_cols=74 Identities=23% Similarity=0.251 Sum_probs=42.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEECCeEEEEEEEeCCCchhhhhhhhhhhcC--CcEEEE
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRG--AVGALL 91 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--~d~~i~ 91 (218)
-.|++.|++||||||+++.+-...+ ..+|-.....+..+....... .+.+.+
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~~~g~--------------------------~~~d~~~~~L~~~l~~~~~~~~~~~~~av 60 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALEDLGY--------------------------YCVDNLPPSLLPKLVELLAQSGGIRKVAV 60 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHHHcCC--------------------------eEECCcCHHHHHHHHHHHHhcCCCCCeEE
Confidence 3689999999999999999932111 011222222233333222221 355778
Q ss_pred EEECCChhhHHHHHHHHHHHHh
Q 027824 92 VYDVTRHATFQNVGRWLRELRE 113 (218)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~i~~ 113 (218)
++|+.+...+..+..++..+..
T Consensus 61 ~iD~r~~~~~~~~~~~~~~L~~ 82 (288)
T PRK05416 61 VIDVRSRPFFDDLPEALDELRE 82 (288)
T ss_pred EEccCchhhHHHHHHHHHHHHH
Confidence 8888776544555555666654
No 479
>PRK01889 GTPase RsgA; Reviewed
Probab=96.75 E-value=0.0017 Score=52.67 Aligned_cols=25 Identities=40% Similarity=0.635 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcC
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEF 38 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~ 38 (218)
-+++++|.+|+|||||++.+.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 3799999999999999999987543
No 480
>PRK14532 adenylate kinase; Provisional
Probab=96.73 E-value=0.0013 Score=48.28 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 027824 15 KLVLIGDSGVGKSNLLSRFTK 35 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~ 35 (218)
+|+++|+|||||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 481
>PRK13949 shikimate kinase; Provisional
Probab=96.72 E-value=0.0014 Score=47.30 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~ 36 (218)
+|+|+|++|+||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999987653
No 482
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.72 E-value=0.0012 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~ 37 (218)
.|+++|++|+|||+|++.+....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999886543
No 483
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.72 E-value=0.0013 Score=47.83 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~ 36 (218)
.|+|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998665
No 484
>PLN02200 adenylate kinase family protein
Probab=96.72 E-value=0.0022 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc
Q 027824 12 YLFKLVLIGDSGVGKSNLLSRFTK 35 (218)
Q Consensus 12 ~~~~i~l~G~~~~GKssli~~l~~ 35 (218)
..+.|+|+|+|||||||+..+|..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 485
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.69 E-value=0.0015 Score=47.57 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCc
Q 027824 15 KLVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~~~ 37 (218)
-|+|+|++|||||||++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 48999999999999999998743
No 486
>PRK14531 adenylate kinase; Provisional
Probab=96.69 E-value=0.0015 Score=47.76 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~ 36 (218)
.+|+++|+|||||||+..++...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999988553
No 487
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.69 E-value=0.0016 Score=43.08 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCChHHHHHHHh
Q 027824 14 FKLVLIGDSGVGKSNLLSRFT 34 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~ 34 (218)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 357999999999999999985
No 488
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.68 E-value=0.0073 Score=48.30 Aligned_cols=96 Identities=18% Similarity=0.073 Sum_probs=62.0
Q ss_pred EEeCCCch-hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 027824 66 IWDTAGQE-RYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAF 144 (218)
Q Consensus 66 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 144 (218)
+-+.+|+. .+.......+..+|+++.|+|+-++.+... ..+.... .+.|.++|+||.|+..... ...=.+.+
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v-~~k~~i~vlNK~DL~~~~~-~~~W~~~~ 86 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIV-KEKPKLLVLNKADLAPKEV-TKKWKKYF 86 (322)
T ss_pred ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHH-ccCCcEEEEehhhcCCHHH-HHHHHHHH
Confidence 33447754 566677788899999999999999865433 2233332 3445599999999965332 11122233
Q ss_pred HHHcCCeEEEEccCCCCCHHHHHH
Q 027824 145 AEQESLYFMETSALDATNVENAFT 168 (218)
Q Consensus 145 ~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (218)
..+.+...+.++++.+.+...+..
T Consensus 87 ~~~~~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 87 KKEEGIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HhcCCCccEEEEeecccCccchHH
Confidence 333466678888888877776664
No 489
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.67 E-value=0.0014 Score=52.22 Aligned_cols=22 Identities=50% Similarity=0.703 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHHHhcCc
Q 027824 16 LVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 16 i~l~G~~~~GKssli~~l~~~~ 37 (218)
++++|++|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999886643
No 490
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=96.66 E-value=0.0019 Score=54.00 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=38.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCcCCCCCcccceeEEEEEEEEE---CCeEEEEEEEeCCCc
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI---DNKVVKAQIWDTAGQ 72 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 72 (218)
..-|.|+|+.++|||||+|.|++-.|.... ...+.....+-+.+ .+..--+.++|..|.
T Consensus 37 YhVVavmG~QSSGKSTLLN~LFgTnF~~MD-A~~gRqQTTKGIWlar~~~i~p~i~vmDvEGT 98 (772)
T KOG2203|consen 37 YHVVAVMGSQSSGKSTLLNHLFGTNFREMD-AFKGRQQTTKGIWLARCAGIEPCILVMDVEGT 98 (772)
T ss_pred eeEEEEecCcccchHHHHHHHhccChHHHH-hhhccccccchhhHHhhcCCCCceEEEecccC
Confidence 356899999999999999999998886654 33333333333332 222222567777763
No 491
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.66 E-value=0.0064 Score=50.02 Aligned_cols=24 Identities=17% Similarity=0.469 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCc
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~ 37 (218)
..+++.|++|+|||++++.+....
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998643
No 492
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.66 E-value=0.0015 Score=48.39 Aligned_cols=22 Identities=45% Similarity=0.517 Sum_probs=18.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHh
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFT 34 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~ 34 (218)
.--.+++||+|||||||++.|-
T Consensus 33 ~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 33 NKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred CceEEEECCCCcCHHHHHHHHH
Confidence 3457899999999999998873
No 493
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.66 E-value=0.0016 Score=47.70 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTK 35 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~ 35 (218)
..|+++|++||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999873
No 494
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.65 E-value=0.0016 Score=49.39 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~ 36 (218)
.++|+|+|+|||||||+...|...
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 378999999999999999988553
No 495
>PLN03025 replication factor C subunit; Provisional
Probab=96.64 E-value=0.02 Score=45.79 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCcC
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKNEF 38 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~~~ 38 (218)
..+++.|++|+||||++..+....+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHh
Confidence 3589999999999999998876543
No 496
>PRK02496 adk adenylate kinase; Provisional
Probab=96.64 E-value=0.0018 Score=47.36 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 027824 14 FKLVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 14 ~~i~l~G~~~~GKssli~~l~~~ 36 (218)
.+|+++|+|||||||+.+.|...
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988643
No 497
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.62 E-value=0.0026 Score=45.98 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKN 36 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~ 36 (218)
..-+.++|.+|||||||++++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 346899999999999999999864
No 498
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.61 E-value=0.01 Score=49.39 Aligned_cols=74 Identities=22% Similarity=0.264 Sum_probs=50.5
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH---HHHcCC
Q 027824 76 RAITSAYYRGAVGALLVYDVTRHATF--QNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAF---AEQESL 150 (218)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~ 150 (218)
+.+|. .+..+|+|+.++|+-+|--| ..+..+...+. ..+..++++||.||.. .++...| ....++
T Consensus 166 RQLWR-VlErSDivvqIVDARnPllfr~~dLe~Yvke~d----~~K~~~LLvNKaDLl~-----~~qr~aWa~YF~~~ni 235 (562)
T KOG1424|consen 166 RQLWR-VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD----PSKANVLLVNKADLLP-----PEQRVAWAEYFRQNNI 235 (562)
T ss_pred HHHHH-HHhhcceEEEEeecCCccccCChhHHHHHhccc----cccceEEEEehhhcCC-----HHHHHHHHHHHHhcCc
Confidence 33443 35689999999999998544 34444544443 3456799999999944 3444444 445789
Q ss_pred eEEEEccCC
Q 027824 151 YFMETSALD 159 (218)
Q Consensus 151 ~~~~~Sa~~ 159 (218)
++++-||..
T Consensus 236 ~~vf~SA~~ 244 (562)
T KOG1424|consen 236 PVVFFSALA 244 (562)
T ss_pred eEEEEeccc
Confidence 999999876
No 499
>PRK00625 shikimate kinase; Provisional
Probab=96.61 E-value=0.0018 Score=46.88 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 027824 15 KLVLIGDSGVGKSNLLSRFTK 35 (218)
Q Consensus 15 ~i~l~G~~~~GKssli~~l~~ 35 (218)
+|+++|.+||||||+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 500
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.60 E-value=0.013 Score=46.70 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCc
Q 027824 13 LFKLVLIGDSGVGKSNLLSRFTKNE 37 (218)
Q Consensus 13 ~~~i~l~G~~~~GKssli~~l~~~~ 37 (218)
..+|++.|++|+|||||++.|+...
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998754
Done!