Query 027824
Match_columns 218
No_of_seqs 123 out of 1806
Neff 10.2
Searched_HMMs 29240
Date Tue Mar 26 18:07:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027824.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2192-2195//hhsearch_pdb/027824hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 1.0 1 1 251.9 18.9 171 9-179 9-179 (216)
2 3cpj_B GTP-binding protein YPT 1.0 1 1 221.8 19.0 210 7-216 7-223 (223)
3 2bcg_Y Protein YP2, GTP-bindin 1.0 1 1 211.3 24.6 177 9-185 4-180 (206)
4 2bov_A RAla, RAS-related prote 1.0 1 1 206.4 23.1 204 1-218 1-206 (206)
5 2fu5_C RAS-related protein RAB 1.0 1 1 204.0 19.9 174 9-182 4-177 (183)
6 2hup_A RAS-related protein RAB 1.0 1 1 203.4 21.7 173 6-178 22-195 (201)
7 2ew1_A RAS-related protein RAB 1.0 1 1 202.4 22.8 175 7-181 20-194 (201)
8 3tkl_A RAS-related protein RAB 1.0 1 1 200.9 24.6 176 7-182 10-185 (196)
9 3dz8_A RAS-related protein RAB 1.0 1 1 200.6 15.2 173 7-179 17-189 (191)
10 1vg8_A RAS-related protein RAB 1.0 1 1 200.2 21.3 175 9-184 4-183 (207)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=1.00 E-value=1 Score=251.86 Aligned_cols=171 Identities=35% Similarity=0.676 Sum_probs=160.4
Q ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCE
Q ss_conf 87434579998699987679898884195788876641169899999989969999999689802344424654159969
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG 88 (218)
Q Consensus 9 ~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 88 (218)
+..+.+||+|+|+++||||||+++|+.+.+...+.+|++.++..+.+..++..+.+.||||+|++.+..++..+++++++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCE
T ss_conf 99870799999949959999999997399999758964447789999713458999999898963245678998426658
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
Q ss_conf 99999799956699999999999861699980999984788889864488999999997699199971699999899999
Q 027824 89 ALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT 168 (218)
Q Consensus 89 ~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (218)
+++|||++++.+|+.+..|+..+......++|++|||||+|+.+.+.+..+++++++.+++++|+||||+++.||+++|.
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~ 168 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR 168 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHH
T ss_conf 99985132157778788999999986289972999920266486181459997669988098047884798969999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999974
Q 027824 169 EVLTQIYKIVS 179 (218)
Q Consensus 169 ~i~~~~~~~~~ 179 (218)
.|++.+.....
T Consensus 169 ~i~~~i~~~~~ 179 (216)
T 4dkx_A 169 RVAAALPGMES 179 (216)
T ss_dssp HHHHHC-----
T ss_pred HHHHHHHHHHC
T ss_conf 99999875021
No 2
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=221.82 Aligned_cols=210 Identities=59% Similarity=0.955 Sum_probs=173.0
Q ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 98874345799986999876798988841957888766411698999999899699999996898023444246541599
Q 027824 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA 86 (218)
Q Consensus 7 ~~~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 86 (218)
....+..++|+++|++++|||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 7 ~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 86 (223)
T 3cpj_B 7 GYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGA 86 (223)
T ss_dssp ---CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTC
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 77877016999999399899999999965998888799645135799999899999999997998420446679872469
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH
Q ss_conf 69999997999566999999999998616999809999847888898644889999999976991999716999998999
Q 027824 87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA 166 (218)
Q Consensus 87 d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (218)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.+++...+++++++||+++.|++++
T Consensus 87 d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 166 (223)
T 3cpj_B 87 VGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKA 166 (223)
T ss_dssp CEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHH
T ss_conf 88999996988899999999999999867899829999988436614466999999999975997999728889898999
Q ss_pred HHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCCCCCCC---CCCCCCCCCCCCCC
Q ss_conf 999999999997443332188----998876899994001---14888885434766
Q 027824 167 FTEVLTQIYKIVSKRAVEAGS----NGTASTLPSKGETIN---VKDDSSVLKRIGCC 216 (218)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~cc 216 (218)
|.++++.+.+........... ..........++++. .+.....+++++||
T Consensus 167 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 223 (223)
T 3cpj_B 167 FEELINTIYQKVSKHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223 (223)
T ss_dssp HHHHHHHHTTCC------------------------CCBCC----------------
T ss_pred HHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999999999986532368011112223556554678752200255545666689999
No 3
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=1.00 E-value=1 Score=211.34 Aligned_cols=177 Identities=49% Similarity=0.829 Sum_probs=162.2
Q ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCE
Q ss_conf 87434579998699987679898884195788876641169899999989969999999689802344424654159969
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG 88 (218)
Q Consensus 9 ~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 88 (218)
..+..++|+++|++++|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCHHHHHHHHHHHCCCCCE
T ss_conf 56766699999999989999999996298887778732522578999989989999999689718777778986447879
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
Q ss_conf 99999799956699999999999861699980999984788889864488999999997699199971699999899999
Q 027824 89 ALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT 168 (218)
Q Consensus 89 ~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (218)
+++|||++++.+++.+..|+..+......+.|+++|+||.|+...+.+..+++++++...+++++++||+++.|++++|.
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
T ss_conf 99999793989999999999999985578997899998987765645599999999998699599985899989899999
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99999999974433321
Q 027824 169 EVLTQIYKIVSKRAVEA 185 (218)
Q Consensus 169 ~i~~~~~~~~~~~~~~~ 185 (218)
++.+.+.+.........
T Consensus 164 ~l~~~i~~~~~~~~~~~ 180 (206)
T 2bcg_Y 164 TMARQIKESMSQQNLNE 180 (206)
T ss_dssp HHHHHHHHHCCHHHHHT
T ss_pred HHHHHHHHHHHHCCCCC
T ss_conf 99999999875001344
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=1.00 E-value=1 Score=206.36 Aligned_cols=204 Identities=30% Similarity=0.471 Sum_probs=166.0
Q ss_pred CCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHH
Q ss_conf 998889-9887434579998699987679898884195788876641169899999989969999999689802344424
Q 027824 1 MAGYKP-DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAIT 79 (218)
Q Consensus 1 m~~~~~-~~~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 79 (218)
|+...+ ..+....++|+++|++++|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++
T Consensus 1 m~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 79 (206)
T 2bov_A 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIR 79 (206)
T ss_dssp ----------CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHH
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEE-EEEEEECCEEEEEEEECCCCHHHHHHHH
T ss_conf 986553678877668999999899889999999983878888799642678-9999989999999998189805669999
Q ss_pred HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCC
Q ss_conf 6541599699999979995669999999999986169-998099998478888986448899999999769919997169
Q 027824 80 SAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 158 (218)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (218)
..+++.+|++++|||++++.+++.+..|+..+..... .+.|+++|+||.|+...+.+..+++++++..++++++++||+
T Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (206)
T 2bov_A 80 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAK 159 (206)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCEEEEEECC
T ss_conf 99996299999999797879999999999999986288999889998556753456124999999999839919998379
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999989999999999999974433321889988768999940011488888543476689
Q 027824 159 DATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 218 (218)
Q Consensus 159 ~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~~ 218 (218)
++.|++++|.++++.+.+...+....... ....+..+.++|++||-+
T Consensus 160 ~g~gi~~l~~~l~~~i~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~Cc~~ 206 (206)
T 2bov_A 160 TRANVDKVFFDLMREIRARKMEDSKEKNG-------------KKKRKSLAKRIRERCCIL 206 (206)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHC------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCC-------------CCCCCCHHHCCCCCEECC
T ss_conf 99898999999999999723443433467-------------533566333223560049
No 5
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=1.00 E-value=1 Score=203.99 Aligned_cols=174 Identities=49% Similarity=0.822 Sum_probs=159.7
Q ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCE
Q ss_conf 87434579998699987679898884195788876641169899999989969999999689802344424654159969
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG 88 (218)
Q Consensus 9 ~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 88 (218)
..+..++|+++|++++|||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHHCCCE
T ss_conf 45776499999979979999999997287987777753532689999989999999998389972133227999836989
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
Q ss_conf 99999799956699999999999861699980999984788889864488999999997699199971699999899999
Q 027824 89 ALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFT 168 (218)
Q Consensus 89 ~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (218)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++++++...+++++++||+++.|++++|.
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 163 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF 163 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
T ss_conf 99999892979999999999999985689998899999855775576899999999998599599986899989899999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999974433
Q 027824 169 EVLTQIYKIVSKRA 182 (218)
Q Consensus 169 ~i~~~~~~~~~~~~ 182 (218)
++.+.+.+...+..
T Consensus 164 ~l~~~i~~~~~~~~ 177 (183)
T 2fu5_C 164 TLARDIKAKMDKNW 177 (183)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999864456
No 6
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=1.00 E-value=1 Score=203.45 Aligned_cols=173 Identities=48% Similarity=0.821 Sum_probs=158.8
Q ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 99887434579998699987679898884195788876641169899999989969999999689802344424654159
Q 027824 6 PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRG 85 (218)
Q Consensus 6 ~~~~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 85 (218)
++++.+..++|+++|++++|||||+++|++..+...+.+|.+.++....+.+++..+.+.+||++|++.+..++..++++
T Consensus 22 ~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 101 (201)
T 2hup_A 22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRS 101 (201)
T ss_dssp ----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTT
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 45445514499999959979999999996098887779975537899999989999999999789857677777998863
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCHH
Q ss_conf 96999999799956699999999999861699980999984788889864488999999997699-19997169999989
Q 027824 86 AVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESL-YFMETSALDATNVE 164 (218)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 164 (218)
+|++++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++++++...++ +++++||+++.|++
T Consensus 102 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 181 (201)
T 2hup_A 102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVE 181 (201)
T ss_dssp CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHH
T ss_conf 99999999797989999999999999986589998899998976633556499999999997599779999698898989
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999997
Q 027824 165 NAFTEVLTQIYKIV 178 (218)
Q Consensus 165 ~~~~~i~~~~~~~~ 178 (218)
++|.+|++.+.+..
T Consensus 182 ~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 182 EAFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999742
No 7
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=1.00 E-value=1 Score=202.37 Aligned_cols=175 Identities=42% Similarity=0.763 Sum_probs=160.4
Q ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 98874345799986999876798988841957888766411698999999899699999996898023444246541599
Q 027824 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA 86 (218)
Q Consensus 7 ~~~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 86 (218)
..+.+..++|+++|++++|||||+++|++..+...+.+|.+.++....+.+++..+.+.+||++|++.+..++..+++++
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 99 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 64346214999999399899999999986889877789523267899999899899999998999587888789997249
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH
Q ss_conf 69999997999566999999999998616999809999847888898644889999999976991999716999998999
Q 027824 87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA 166 (218)
Q Consensus 87 d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (218)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++++++...+++++++||+++.|++++
T Consensus 100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 179 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKL 179 (201)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHH
T ss_conf 89999997989799999999999999866889978999989877635563999999999976997999818899798999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999997443
Q 027824 167 FTEVLTQIYKIVSKR 181 (218)
Q Consensus 167 ~~~i~~~~~~~~~~~ 181 (218)
|.+++..+.+...+.
T Consensus 180 ~~~l~~~i~~~~~~~ 194 (201)
T 2ew1_A 180 FLDLACRLISEARQN 194 (201)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999998651
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=1.00 E-value=1 Score=200.90 Aligned_cols=176 Identities=50% Similarity=0.810 Sum_probs=162.6
Q ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 98874345799986999876798988841957888766411698999999899699999996898023444246541599
Q 027824 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA 86 (218)
Q Consensus 7 ~~~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 86 (218)
..+.+..++|+++|++++|||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 80326662999999599899999999973988888788605157999999899999999998999576655679998619
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH
Q ss_conf 69999997999566999999999998616999809999847888898644889999999976991999716999998999
Q 027824 87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA 166 (218)
Q Consensus 87 d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (218)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++++++...+++++++||+++.|++++
T Consensus 90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 169 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 169 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHH
T ss_conf 89999997959899999999999999865889988999888546656656999999999983996899848999798999
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999974433
Q 027824 167 FTEVLTQIYKIVSKRA 182 (218)
Q Consensus 167 ~~~i~~~~~~~~~~~~ 182 (218)
|.++.+.+.+......
T Consensus 170 ~~~l~~~i~~~~~~~~ 185 (196)
T 3tkl_A 170 FMTMAAEIKKRMGPGA 185 (196)
T ss_dssp HHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 9999999999752466
No 9
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=1.00 E-value=1 Score=200.56 Aligned_cols=173 Identities=42% Similarity=0.732 Sum_probs=159.0
Q ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 98874345799986999876798988841957888766411698999999899699999996898023444246541599
Q 027824 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGA 86 (218)
Q Consensus 7 ~~~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 86 (218)
..+.+..+||+++|++++|||||+++|++..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++
T Consensus 17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (191)
T 3dz8_A 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA 96 (191)
T ss_dssp TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 43457406999999899689999999806988746688720588999998899899999995898388998899997169
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH
Q ss_conf 69999997999566999999999998616999809999847888898644889999999976991999716999998999
Q 027824 87 VGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENA 166 (218)
Q Consensus 87 d~~i~v~d~~~~~s~~~l~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 166 (218)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++++++...+++++++||+++.|++++
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 176 (191)
T 3dz8_A 97 MGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA 176 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHH
T ss_conf 89999997958799999999999999756899988999989777546664999999999984986999979999898999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999974
Q 027824 167 FTEVLTQIYKIVS 179 (218)
Q Consensus 167 ~~~i~~~~~~~~~ 179 (218)
|+++++.+.+...
T Consensus 177 ~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 177 FERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998624
No 10
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=1.00 E-value=1 Score=200.25 Aligned_cols=175 Identities=36% Similarity=0.645 Sum_probs=155.3
Q ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCE
Q ss_conf 87434579998699987679898884195788876641169899999989969999999689802344424654159969
Q 027824 9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVG 88 (218)
Q Consensus 9 ~~~~~~~I~i~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 88 (218)
..+..++|+++|++++|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHCCCE
T ss_conf 66764499999969999999999997399987788850206899999989989999999589847778768999807969
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCC----CCCCEEEEEECCCCCCCCCCCHHHHHHHHH-HCCCEEEEECCCCCCCH
Q ss_conf 9999979995669999999999986169----998099998478888986448899999999-76991999716999998
Q 027824 89 ALLVYDVTRHATFQNVGRWLRELREHTD----PNIIVMLIGNKTDLRHLVAVSTEDGKAFAE-QESLYFMETSALDATNV 163 (218)
Q Consensus 89 ~i~v~d~~~~~s~~~l~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i 163 (218)
+++|||++++.+++.+..|+..+..... .+.|+++|+||.|+. .+.+..+++++++. ..+++++++||+++.|+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC-CCCCCHHHHHHHHHHCCCCEEEEEECCCCCCH
T ss_conf 99999798878999999999999975265567798389999898786-35449999999998548965999737879798
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999997443332
Q 027824 164 ENAFTEVLTQIYKIVSKRAVE 184 (218)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~~ 184 (218)
+++|++|.+.+.+........
T Consensus 163 ~~l~~~l~~~~~~~~~~~~~~ 183 (207)
T 1vg8_A 163 EQAFQTIARNALKQETEVELY 183 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999999999842244444
Done!