BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027825
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 66 PGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGE 125
PG V+IYT R C R ++ +E D S + E+++ G
Sbjct: 2 PGSMVDVIIYT------RPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRN 55
Query: 126 TVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARV 163
T P++FI +VGG D+L L + GKL +L++ ++
Sbjct: 56 TF--PQIFIGSVHVGGCDDLYALEDEGKLDSLLKTGKL 91
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 70 DGVVIYTTSLRGVRRTY-EDCNRVRSTFE---VNRVVTDERDVSLHGQFLNELKDLLGGE 125
+ VVIY+ +T+ C V++ F+ V +V + + G L ++ + L G+
Sbjct: 19 NTVVIYS-------KTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQ 71
Query: 126 TVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
TVP VF+ G+++GG + +LN G L ML A
Sbjct: 72 H-TVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEA 106
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 159
TVP V+I G+++GG +L L ++GKL +L+
Sbjct: 77 TVPNVYINGKHIGGNSDLETLKKNGKLAEILK 108
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 159
TVP V+I G+++GG +L L ++GKL +L+
Sbjct: 74 TVPNVYINGKHIGGNSDLETLKKNGKLAEILK 105
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 159
TVP V+I G+++GG +L L ++GKL +L+
Sbjct: 94 TVPNVYINGKHIGGNSDLETLKKNGKLAEILK 125
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 159
T P++++KG VGG+D + EL E+G+L +LR
Sbjct: 72 TYPQLYVKGELVGGLDIVKELKENGELLPILR 103
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 89 CNRVRSTFE---VNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDEL 145
C + F VN V + + QF + L + G TV PR+F+ G ++GG +
Sbjct: 40 CTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTV--PRIFVNGTFIGGATDT 97
Query: 146 TELNESGKL 154
L++ GKL
Sbjct: 98 HRLHKEGKL 106
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 66 PGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGE 125
PG +++YT R C R R + V + D S E+ G
Sbjct: 2 PGSMKEIILYT------RPNCPYCKRARDLLDKKGVKYTDIDAST--SLRQEMVQRANGR 53
Query: 126 TVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSAR 162
T P++FI +VGG D+L L GKL +L+
Sbjct: 54 N-TFPQIFIGDYHVGGCDDLYALENKGKLDSLLQDVH 89
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 89 CNRVRSTFE---VNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDEL 145
C + F VN V + + QF + L + G TV PR+F+ G ++GG +
Sbjct: 48 CTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTV--PRIFVNGTFIGGATDT 105
Query: 146 TELNESGKL 154
L++ GKL
Sbjct: 106 HRLHKEGKL 114
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 89 CNRVRSTFE---VNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDEL 145
C + F VN V + + QF + L + G TV PR+F+ G ++GG +
Sbjct: 62 CTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTV--PRIFVNGTFIGGATDT 119
Query: 146 TELNESGKL 154
L++ GKL
Sbjct: 120 HRLHKEGKL 128
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 127 VTVPRVFIKGRYVGGVDELTELNESGKLGRMLR 159
TVP++FI +++GG D+L L+ G L +L+
Sbjct: 50 TTVPQIFIDAQHIGGYDDLYALDARGGLDPLLK 82
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 127 VTVPRVFIKGRYVGGVDELTELNESGKLGRMLR 159
TVP++FI +++GG D+L L+ G L +L+
Sbjct: 50 TTVPQIFIDAQHIGGYDDLYALDARGGLDPLLK 82
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLRS 160
++P++FI +++GG D++ L+ +GKL +L S
Sbjct: 67 SLPQIFIDDQHIGGCDDIYALDGAGKLDPLLHS 99
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 90 NRVRSTFE---VNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELT 146
+ V+S F+ V+ +V + ++ G + ++ + L G+ TVP VFI G+++GG +
Sbjct: 32 SEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLTGQH-TVPNVFIGGKHIGGCTDTV 90
Query: 147 ELNESGKLGRMLRSARVEMGIG 168
+L G+L +L A + G
Sbjct: 91 KLYRKGELEPLLSEANAKKSQG 112
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 33.5 bits (75), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 116 NELKDLLGGET--VTVPRVFIKGRYVGGVDELTELNESGKLGRMLR 159
NE++D L T TVPRVFI +GG +L L +SG+L L+
Sbjct: 54 NEIQDYLQQLTGARTVPRVFIGKDSIGGSSDLVSLQQSGELLTRLK 99
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 124 GETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSAR 162
E T+P++++ ++GG D +T + SG+L +L A+
Sbjct: 70 SEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEEAQ 108
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 33.5 bits (75), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 116 NELKDLLGGET--VTVPRVFIKGRYVGGVDELTELNESGKLGRMLRS 160
NE++D L T TVPRVFI +GG +L L +SG+L L+
Sbjct: 55 NEIQDYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQ 101
>pdb|1J0F|A Chain A, Solution Structure Of The Sh3 Domain Binding Glutamic
Acid- Rich Protein Like 3
Length = 100
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 37/91 (40%)
Query: 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVP 130
G+ +Y+TS+ G R + V + R+ D+S +E++ L G T P
Sbjct: 10 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPP 69
Query: 131 RVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
++ Y G + E E L L+ A
Sbjct: 70 QIVNGNHYCGDYELFVEAVEQDTLQEFLKLA 100
>pdb|1SJ6|A Chain A, Nmr Structure And Regulated Expression In Apl Cell Of
Human Sh3bgrl3
Length = 101
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 38/91 (41%)
Query: 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVP 130
G+ +Y+TS+ G R + V + R+ D+S +E++ L G T P
Sbjct: 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRALAGNPKATPP 62
Query: 131 RVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
++ +Y G + E E L L+ A
Sbjct: 63 QIVNGDQYCGDYELFVEAVEQNTLQEFLKLA 93
>pdb|1T1V|A Chain A, Crystal Structure Of The Glutaredoxin-Like Protein
Sh3bgrl3 At 1.6 A Resolution
pdb|1T1V|B Chain B, Crystal Structure Of The Glutaredoxin-Like Protein
Sh3bgrl3 At 1.6 A Resolution
Length = 93
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 37/91 (40%)
Query: 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVP 130
G+ +Y+TS+ G R + V + R+ D+S +E++ L G T P
Sbjct: 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPP 62
Query: 131 RVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
++ Y G + E E L L+ A
Sbjct: 63 QIVNGNHYCGDYELFVEAVEQDTLQEFLKLA 93
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 116 NELKDLL----GGETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARV 163
NEL+D GG+TV PR+F +GG +L E++ LG +L S V
Sbjct: 61 NELRDYFEQITGGKTV--PRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGV 110
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 159
T+P+V++ G +VGG D L +++++G L L+
Sbjct: 76 TIPQVYLNGEFVGGCDILLQMHQNGDLVEELK 107
>pdb|2HZE|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 116 NELKDLL----GGETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARV 163
NEL+D GG+TV PR+F +GG +L E++ LG +L S V
Sbjct: 61 NELRDYFEQITGGKTV--PRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGV 110
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 67 GGSDGVVIYTTSLRGVRRTYEDCNRVRSTFE---VNRVVTDERDVSLHGQFLNELKDLLG 123
S VV+++ + G CNRV+ + V + ++S Q + L G
Sbjct: 18 ASSAPVVVFSKTYCGY------CNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTG 71
Query: 124 GETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
TV P VFI G+ +GG D + E ++ +L +L+ A
Sbjct: 72 RGTV--PNVFIGGKQIGGCDTVVEKHQRNELLPLLQDA 107
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 89 CNRVRSTFE---VNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDEL 145
CNRV+ + V + ++S Q + L G TV P VFI G+ +GG D +
Sbjct: 33 CNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTV--PNVFIGGKQIGGCDTV 90
Query: 146 TELNESGKLGRMLRSA 161
E ++ +L +L+ A
Sbjct: 91 VEKHQRNELLPLLQDA 106
>pdb|2VRW|B Chain B, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 406
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 101 VVTDERDVSLHGQFLNELKDLLGGE-TVTVPRVFIK--------GRYVGGVD 143
V E S+H FL ELKD L G T+ +VFIK GRY V+
Sbjct: 68 FVNIEELFSVHTHFLKELKDALAGPGATTLYQVFIKYKERFLVYGRYCSQVE 119
>pdb|1F5X|A Chain A, Nmr Structure Of The Y174 Autoinhibited Dbl Homology
Domain
Length = 208
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 102 VTDERDVSLHGQFLNELKDLLGGE-TVTVPRVFIK--------GRYVGGVD 143
V E S+H FL ELKD L G T+ +VFIK GRY V+
Sbjct: 71 VNIEELFSVHTHFLKELKDALAGPGATTLYQVFIKYKERFLVYGRYCSQVE 121
>pdb|3LGC|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis
pdb|3MSZ|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
pdb|3MSZ|B Chain B, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
Length = 89
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 89 CNRVRSTFEVNRVVTDERDVSLHGQ---FLNELKDLLGGETV----TVPRVFIKGRYVGG 141
C + FE N + DE + + Q F +E G+ + TVP++FI ++GG
Sbjct: 17 CVWAKQWFEENNIAFDETIIDDYAQRSKFYDEXNQ--SGKVIFPISTVPQIFIDDEHIGG 74
Query: 142 VDEL 145
EL
Sbjct: 75 FTEL 78
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 24/32 (75%)
Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 159
T P+++++G VGG+D + EL ++G+L +L+
Sbjct: 70 TYPQLYVRGDLVGGLDIVKELKDNGELLPILK 101
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 159
TVP +F+ +VGG D+ + +SG L ++L+
Sbjct: 70 TVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 101
>pdb|2LQO|A Chain A, Mrx1 Reduced
pdb|2LQQ|A Chain A, Oxidized Mrx1
Length = 92
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVT 128
+ + IYTTS G C R+++ NR+ DE D+ H + E + G T
Sbjct: 3 TAALTIYTTSWCGY------CLRLKTALTANRIAYDEVDIE-HNRAAAEFVGSVNGGNRT 55
Query: 129 VPRV 132
VP V
Sbjct: 56 VPTV 59
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 16/18 (88%)
Query: 128 TVPRVFIKGRYVGGVDEL 145
TVP+VFI G+++GG D+L
Sbjct: 219 TVPQVFIGGKHIGGSDDL 236
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 159
T P++++ G VGG D + E+ + G+L ++++
Sbjct: 70 TFPQLWVDGELVGGCDIVIEMYQRGELQQLIK 101
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 116 NELKDLLGGET--VTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
NE++D L T TVPRVFI +GG +L +++ G+L L+
Sbjct: 54 NEIQDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQV 101
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 159
T P++++ G VGG D + E+ + G+L ++++
Sbjct: 90 TFPQLWVDGELVGGCDIVIEMYQRGELQQLIK 121
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 128 TVPRVFIKGRYVGGVDEL 145
TVP ++I G+++GG D+L
Sbjct: 74 TVPNIYINGKHIGGNDDL 91
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 62 EKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVT 103
+K PP G ++I TTS + V + E N +T V + T
Sbjct: 158 KKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIAT 199
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 128 TVPRVFIKGRYVGGVDEL 145
TVP ++I G+++GG D+L
Sbjct: 82 TVPNIYINGKHIGGNDDL 99
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 105 ERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLR 159
E D HG+ L E L+ G TVP + + G GG +E+ +L+ GKL L+
Sbjct: 48 ELDKHGHGEELQEYIKLVTGRG-TVPNLLVNGVSRGGNEEIKKLHTQGKLLESLQ 101
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 62 EKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVT 103
+K PP G ++I TTS + V + E N +T V + T
Sbjct: 159 KKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIAT 200
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 128 TVPRVFIKGRYVGGVDEL 145
TVP ++I G+++GG D+L
Sbjct: 318 TVPNIYINGKHIGGNDDL 335
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFE 97
D VVIY L +RR +D N VR+ E
Sbjct: 446 DNVVIYEGELESLRRFKDDVNEVRNGME 473
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
T P+++I G + GG D E +SG+L + A
Sbjct: 73 TFPQLYIDGEFFGGCDITVEAYKSGELQEQVEKA 106
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 128 TVPRVFIKGRYVGGVDELTELNESGKL 154
T P++++ G +GG+D + EL S +L
Sbjct: 71 TYPQLYVSGELIGGLDIIKELEASEEL 97
>pdb|2ZU0|A Chain A, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|B Chain B, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 423
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 108 VSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE 147
VS+ G+ + +D L +V VF+ GRYV + + TE
Sbjct: 63 VSIAGEISPQQRDALALTLDSVRLVFVDGRYVPALSDATE 102
>pdb|1VH4|A Chain A, Crystal Structure Of A Stabilizer Of Iron Transporter
pdb|1VH4|B Chain B, Crystal Structure Of A Stabilizer Of Iron Transporter
Length = 435
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 108 VSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE 147
VS+ G+ + +D L +V VF+ GRYV + + TE
Sbjct: 65 VSIAGEISPQQRDALALTLDSVRLVFVDGRYVPALSDATE 104
>pdb|1CVR|A Chain A, Crystal Structure Of The Arg Specific Cysteine
Proteinase Gingipain R (Rgpb)
Length = 435
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 9 NKAGSRADHHTEGEGFKPVKENIFIVRDRMEREKEGKQAKYEKLIRDLLSDFPEKCPPG 67
N+ G R + + PV N + E EKEG Y L+ D D P K PG
Sbjct: 32 NQRGLRTEVKVAEDIASPVTANAIQQFVKQEYEKEGNDLTYVLLVGD-HKDIPAKITPG 89
>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|B Chain B, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|C Chain C, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|D Chain D, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|E Chain E, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|F Chain F, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|G Chain G, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 237
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 139 VGGVDELTELNESGKLGRMLRSARVEMGIGRQAC 172
+ GVDE+ +L E+ G +L +G+GR A
Sbjct: 129 IAGVDEVPKLYETDPSGALLEYKATAIGMGRNAV 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,040,879
Number of Sequences: 62578
Number of extensions: 296552
Number of successful extensions: 756
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 712
Number of HSP's gapped (non-prelim): 51
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)