Query 027825
Match_columns 218
No_of_seqs 223 out of 1261
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 15:46:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2824 Glutaredoxin-related p 100.0 1.9E-55 4.1E-60 386.3 14.4 159 56-218 117-281 (281)
2 cd03031 GRX_GRX_like Glutaredo 100.0 6.9E-53 1.5E-57 344.3 16.6 140 71-213 1-147 (147)
3 cd03030 GRX_SH3BGR Glutaredoxi 99.9 5E-25 1.1E-29 167.1 9.2 88 72-159 2-91 (92)
4 PRK10824 glutaredoxin-4; Provi 99.9 1.5E-22 3.2E-27 159.4 11.2 94 68-164 13-106 (115)
5 TIGR00365 monothiol glutaredox 99.9 2.7E-22 5.9E-27 152.7 11.3 88 68-158 10-97 (97)
6 TIGR02189 GlrX-like_plant Glut 99.9 3.8E-22 8.2E-27 152.5 10.9 88 68-163 6-96 (99)
7 PHA03050 glutaredoxin; Provisi 99.9 9.7E-22 2.1E-26 152.8 11.1 90 68-165 11-106 (108)
8 cd03028 GRX_PICOT_like Glutare 99.8 8.3E-21 1.8E-25 142.2 10.3 85 68-155 6-90 (90)
9 TIGR02181 GRX_bact Glutaredoxi 99.8 1.4E-20 3E-25 136.2 9.5 79 72-158 1-79 (79)
10 PRK10638 glutaredoxin 3; Provi 99.8 5.2E-20 1.1E-24 135.2 10.6 81 71-159 3-83 (83)
11 cd03418 GRX_GRXb_1_3_like Glut 99.8 7E-19 1.5E-23 125.3 10.3 75 71-152 1-75 (75)
12 PTZ00062 glutaredoxin; Provisi 99.8 5.8E-19 1.3E-23 151.4 11.6 91 67-160 110-200 (204)
13 cd03027 GRX_DEP Glutaredoxin ( 99.8 6E-19 1.3E-23 126.3 9.2 73 70-150 1-73 (73)
14 KOG1752 Glutaredoxin and relat 99.8 3.2E-18 7E-23 132.7 10.5 89 67-163 11-102 (104)
15 COG0278 Glutaredoxin-related p 99.8 2.3E-18 4.9E-23 132.0 9.2 92 67-161 12-104 (105)
16 TIGR02180 GRX_euk Glutaredoxin 99.7 1.5E-17 3.3E-22 120.0 9.0 79 72-158 1-84 (84)
17 COG0695 GrxC Glutaredoxin and 99.7 1.7E-17 3.8E-22 122.3 8.3 76 71-154 2-79 (80)
18 cd03419 GRX_GRXh_1_2_like Glut 99.7 2.6E-17 5.7E-22 118.6 8.3 79 71-157 1-82 (82)
19 cd03029 GRX_hybridPRX5 Glutare 99.7 7E-17 1.5E-21 115.1 9.1 70 71-149 2-71 (72)
20 cd02066 GRX_family Glutaredoxi 99.7 1.8E-16 3.8E-21 109.5 9.7 72 71-150 1-72 (72)
21 PF04908 SH3BGR: SH3-binding, 99.7 1.2E-16 2.7E-21 122.8 8.3 89 71-159 2-97 (99)
22 TIGR02190 GlrX-dom Glutaredoxi 99.7 2.7E-16 5.9E-21 114.7 9.6 72 68-148 6-77 (79)
23 TIGR02183 GRXA Glutaredoxin, G 99.7 4E-16 8.6E-21 115.8 9.4 74 72-152 2-81 (86)
24 PRK11200 grxA glutaredoxin 1; 99.7 5.7E-16 1.2E-20 114.0 9.8 74 71-151 2-81 (85)
25 KOG0911 Glutaredoxin-related p 99.6 5.9E-16 1.3E-20 133.7 9.5 91 67-160 136-226 (227)
26 PF00462 Glutaredoxin: Glutare 99.6 2.3E-15 5E-20 103.8 8.2 60 72-139 1-60 (60)
27 PRK12759 bifunctional gluaredo 99.5 2.9E-14 6.2E-19 133.4 10.1 86 70-165 2-95 (410)
28 PRK10329 glutaredoxin-like pro 99.5 5.5E-13 1.2E-17 98.4 9.9 65 71-144 2-66 (81)
29 TIGR02194 GlrX_NrdH Glutaredox 99.4 4E-13 8.8E-18 96.0 7.9 64 72-144 1-65 (72)
30 TIGR02196 GlrX_YruB Glutaredox 99.2 1.9E-10 4.1E-15 79.7 9.6 66 71-144 1-66 (74)
31 cd02976 NrdH NrdH-redoxin (Nrd 99.1 4.9E-10 1.1E-14 77.5 9.2 66 71-144 1-66 (73)
32 TIGR02200 GlrX_actino Glutared 98.9 1.7E-08 3.6E-13 71.2 9.8 66 71-143 1-67 (77)
33 KOG4023 Uncharacterized conser 98.8 6.9E-09 1.5E-13 79.7 5.0 93 71-164 3-102 (108)
34 cd02973 TRX_GRX_like Thioredox 98.7 4.1E-08 8.9E-13 68.3 6.5 59 71-141 2-65 (67)
35 cd03041 GST_N_2GST_N GST_N fam 98.6 2.7E-07 5.9E-12 66.4 8.9 70 72-149 2-73 (77)
36 cd03040 GST_N_mPGES2 GST_N fam 98.5 7.5E-07 1.6E-11 63.5 8.9 67 71-148 1-71 (77)
37 cd03037 GST_N_GRX2 GST_N famil 98.4 1.1E-06 2.4E-11 61.7 7.6 68 73-150 2-70 (71)
38 cd00570 GST_N_family Glutathio 98.4 6E-07 1.3E-11 60.3 5.6 68 73-148 2-69 (71)
39 cd03055 GST_N_Omega GST_N fami 98.4 1.5E-06 3.3E-11 64.3 8.0 75 65-148 12-87 (89)
40 cd03059 GST_N_SspA GST_N famil 98.2 5.6E-06 1.2E-10 57.9 7.1 68 72-148 1-68 (73)
41 cd03036 ArsC_like Arsenate Red 98.2 2.6E-06 5.7E-11 66.1 4.7 45 72-122 1-45 (111)
42 cd02977 ArsC_family Arsenate R 98.1 4.8E-06 1E-10 63.5 4.4 45 72-122 1-45 (105)
43 PRK01655 spxA transcriptional 98.0 1.2E-05 2.6E-10 64.4 6.3 45 72-122 2-46 (131)
44 cd03060 GST_N_Omega_like GST_N 98.0 1.9E-05 4E-10 55.6 6.6 66 73-147 2-68 (71)
45 cd03051 GST_N_GTT2_like GST_N 98.0 1.5E-05 3.2E-10 55.4 5.5 68 72-147 1-71 (74)
46 PF13417 GST_N_3: Glutathione 98.0 2.2E-05 4.9E-10 56.0 5.9 67 74-149 1-67 (75)
47 cd03045 GST_N_Delta_Epsilon GS 97.9 3.1E-05 6.7E-10 54.3 6.3 68 72-147 1-70 (74)
48 PF05768 DUF836: Glutaredoxin- 97.9 0.0001 2.2E-09 53.9 9.2 53 71-136 1-57 (81)
49 TIGR01617 arsC_related transcr 97.9 2.9E-05 6.4E-10 60.5 6.2 45 72-122 1-45 (117)
50 TIGR00411 redox_disulf_1 small 97.9 0.0001 2.2E-09 52.4 8.1 55 71-137 2-62 (82)
51 cd03032 ArsC_Spx Arsenate Redu 97.9 3.7E-05 7.9E-10 59.9 6.3 45 72-122 2-46 (115)
52 cd03056 GST_N_4 GST_N family, 97.8 6.8E-05 1.5E-09 52.1 6.5 68 72-147 1-70 (73)
53 PRK13344 spxA transcriptional 97.7 5E-05 1.1E-09 61.0 5.3 45 72-122 2-46 (132)
54 PRK12559 transcriptional regul 97.7 5.5E-05 1.2E-09 60.7 5.4 45 72-122 2-46 (131)
55 cd03035 ArsC_Yffb Arsenate Red 97.7 6E-05 1.3E-09 58.2 4.5 45 72-122 1-45 (105)
56 cd03033 ArsC_15kD Arsenate Red 97.6 8.3E-05 1.8E-09 58.2 4.8 46 71-122 1-46 (113)
57 cd03054 GST_N_Metaxin GST_N fa 97.6 0.00048 1E-08 48.4 8.3 60 81-150 11-70 (72)
58 cd03026 AhpF_NTD_C TRX-GRX-lik 97.6 0.00018 3.9E-09 53.8 6.1 59 70-140 14-77 (89)
59 cd03058 GST_N_Tau GST_N family 97.6 0.00038 8.1E-09 49.1 7.1 69 72-148 1-69 (74)
60 PHA02125 thioredoxin-like prot 97.5 0.00047 1E-08 49.4 7.3 55 72-139 2-56 (75)
61 cd03053 GST_N_Phi GST_N family 97.4 0.00068 1.5E-08 47.7 7.1 70 72-149 2-73 (76)
62 TIGR00412 redox_disulf_2 small 97.4 0.0007 1.5E-08 48.8 6.6 54 72-139 3-60 (76)
63 cd03052 GST_N_GDAP1 GST_N fami 97.4 0.00061 1.3E-08 48.7 6.0 69 72-148 1-71 (73)
64 PF13192 Thioredoxin_3: Thiore 97.3 0.0013 2.9E-08 47.3 7.5 47 85-138 9-59 (76)
65 cd03076 GST_N_Pi GST_N family, 97.3 0.0013 2.8E-08 46.6 7.2 69 72-149 2-70 (73)
66 KOG3029 Glutathione S-transfer 97.3 0.00084 1.8E-08 60.8 7.3 86 68-164 87-178 (370)
67 cd03042 GST_N_Zeta GST_N famil 97.2 0.00091 2E-08 46.4 5.8 67 73-147 2-70 (73)
68 cd03061 GST_N_CLIC GST_N famil 97.2 0.0026 5.6E-08 48.2 8.2 76 72-150 6-83 (91)
69 cd03039 GST_N_Sigma_like GST_N 97.2 0.0017 3.8E-08 45.4 6.6 68 73-148 2-69 (72)
70 cd03048 GST_N_Ure2p_like GST_N 97.1 0.0023 4.9E-08 45.8 6.6 68 72-148 2-74 (81)
71 cd03049 GST_N_3 GST_N family, 97.0 0.0019 4.2E-08 45.2 5.7 66 73-147 2-70 (73)
72 COG1393 ArsC Arsenate reductas 97.0 0.0011 2.3E-08 52.5 4.6 46 71-122 2-47 (117)
73 PRK10387 glutaredoxin 2; Provi 97.0 0.0031 6.7E-08 52.5 7.4 70 72-151 1-71 (210)
74 TIGR00014 arsC arsenate reduct 97.0 0.0013 2.7E-08 51.4 4.7 45 72-122 1-45 (114)
75 cd03034 ArsC_ArsC Arsenate Red 97.0 0.0013 2.9E-08 51.0 4.7 45 72-122 1-45 (112)
76 TIGR02182 GRXB Glutaredoxin, G 96.9 0.0029 6.4E-08 53.5 6.9 68 74-151 2-70 (209)
77 TIGR01616 nitro_assoc nitrogen 96.9 0.0019 4E-08 51.7 5.1 45 71-121 2-46 (126)
78 PRK10853 putative reductase; P 96.9 0.0016 3.6E-08 51.3 4.5 45 72-122 2-46 (118)
79 cd03080 GST_N_Metaxin_like GST 96.8 0.0093 2E-07 42.3 7.8 68 72-149 2-70 (75)
80 PRK10026 arsenate reductase; P 96.8 0.0022 4.8E-08 52.3 5.0 46 71-122 3-48 (141)
81 cd02975 PfPDO_like_N Pyrococcu 96.8 0.0056 1.2E-07 47.2 6.9 54 69-134 22-81 (113)
82 PLN03165 chaperone protein dna 96.7 0.0022 4.8E-08 50.5 4.2 50 168-217 40-93 (111)
83 cd01659 TRX_superfamily Thiore 96.7 0.006 1.3E-07 38.4 5.5 56 72-136 1-61 (69)
84 cd03038 GST_N_etherase_LigE GS 96.7 0.0044 9.6E-08 44.8 5.3 66 81-149 11-79 (84)
85 cd03050 GST_N_Theta GST_N fami 96.6 0.01 2.2E-07 41.9 6.9 69 72-148 1-71 (76)
86 COG4545 Glutaredoxin-related p 96.6 0.007 1.5E-07 44.8 5.8 66 73-145 5-81 (85)
87 cd03043 GST_N_1 GST_N family, 96.5 0.011 2.4E-07 41.9 6.4 66 80-147 4-70 (73)
88 cd03044 GST_N_EF1Bgamma GST_N 96.5 0.0093 2E-07 42.2 5.9 67 73-147 2-70 (75)
89 cd02947 TRX_family TRX family; 96.4 0.027 5.8E-07 39.1 7.7 57 72-140 14-77 (93)
90 PRK09481 sspA stringent starva 96.3 0.016 3.5E-07 48.7 7.6 69 70-147 9-77 (211)
91 cd02953 DsbDgamma DsbD gamma f 96.3 0.016 3.6E-07 43.1 6.6 55 72-134 15-78 (104)
92 cd03046 GST_N_GTT1_like GST_N 96.3 0.014 3E-07 40.7 5.8 68 73-149 2-71 (76)
93 TIGR02187 GlrX_arch Glutaredox 96.0 0.019 4.1E-07 49.0 6.6 55 70-136 135-194 (215)
94 PF03960 ArsC: ArsC family; I 96.0 0.017 3.7E-07 44.3 5.6 38 85-122 5-42 (110)
95 cd03047 GST_N_2 GST_N family, 96.0 0.03 6.4E-07 39.2 6.2 66 73-146 2-69 (73)
96 cd03057 GST_N_Beta GST_N famil 96.0 0.023 5E-07 40.0 5.7 66 73-147 2-70 (77)
97 PF13409 GST_N_2: Glutathione 95.9 0.0088 1.9E-07 42.1 3.4 63 86-150 2-68 (70)
98 cd02949 TRX_NTR TRX domain, no 95.9 0.035 7.5E-07 41.0 6.6 57 72-140 17-81 (97)
99 TIGR00862 O-ClC intracellular 95.9 0.042 9.1E-07 48.2 8.1 76 72-150 3-80 (236)
100 TIGR01295 PedC_BrcD bacterioci 95.8 0.043 9.2E-07 43.2 7.1 64 72-142 27-106 (122)
101 TIGR03140 AhpF alkyl hydropero 95.4 0.034 7.4E-07 53.4 6.4 62 68-141 117-183 (515)
102 PRK15317 alkyl hydroperoxide r 95.2 0.046 1E-06 52.5 6.4 62 68-141 116-182 (517)
103 cd02957 Phd_like Phosducin (Ph 95.1 0.11 2.3E-06 39.7 7.0 63 72-147 28-97 (113)
104 PF00085 Thioredoxin: Thioredo 94.9 0.1 2.2E-06 37.7 6.3 59 70-140 18-85 (103)
105 PTZ00051 thioredoxin; Provisio 94.9 0.16 3.6E-06 36.9 7.4 57 72-140 22-85 (98)
106 TIGR03143 AhpF_homolog putativ 94.8 0.072 1.6E-06 51.8 6.6 58 69-138 477-539 (555)
107 PRK15113 glutathione S-transfe 94.7 0.14 3E-06 43.2 7.4 72 71-148 5-78 (214)
108 cd03077 GST_N_Alpha GST_N fami 94.7 0.21 4.6E-06 35.8 7.4 66 72-146 2-69 (79)
109 cd02989 Phd_like_TxnDC9 Phosdu 94.7 0.2 4.4E-06 38.5 7.7 57 72-140 26-89 (113)
110 TIGR01262 maiA maleylacetoacet 94.6 0.06 1.3E-06 44.6 4.9 68 74-149 2-72 (210)
111 PHA02278 thioredoxin-like prot 94.6 0.18 3.8E-06 38.6 7.0 63 69-139 14-85 (103)
112 PRK09381 trxA thioredoxin; Pro 94.6 0.35 7.6E-06 36.1 8.6 59 72-142 25-91 (109)
113 TIGR01068 thioredoxin thioredo 94.5 0.33 7.1E-06 34.8 8.1 49 85-139 25-81 (101)
114 KOG0406 Glutathione S-transfer 94.5 0.21 4.5E-06 44.1 8.1 73 69-149 7-79 (231)
115 PLN02473 glutathione S-transfe 94.2 0.16 3.4E-06 42.4 6.6 70 72-149 3-74 (214)
116 PF00684 DnaJ_CXXCXGXG: DnaJ c 94.2 0.069 1.5E-06 37.7 3.7 40 178-217 13-63 (66)
117 PF13098 Thioredoxin_2: Thiore 94.1 0.31 6.7E-06 36.3 7.4 66 71-144 8-104 (112)
118 cd02954 DIM1 Dim1 family; Dim1 94.1 0.29 6.3E-06 38.5 7.4 57 72-140 18-82 (114)
119 PLN02817 glutathione dehydroge 93.9 0.15 3.3E-06 45.3 6.2 62 85-149 72-133 (265)
120 PLN02378 glutathione S-transfe 93.4 0.22 4.8E-06 42.1 6.1 62 84-148 18-79 (213)
121 COG0484 DnaJ DnaJ-class molecu 93.2 0.074 1.6E-06 49.9 3.1 49 169-217 142-204 (371)
122 cd02985 TRX_CDSP32 TRX family, 93.2 0.67 1.5E-05 34.7 7.9 59 72-139 19-84 (103)
123 PRK10767 chaperone protein Dna 93.0 0.1 2.2E-06 48.5 3.8 49 169-217 142-202 (371)
124 PRK10877 protein disulfide iso 93.0 0.8 1.7E-05 39.9 9.2 34 67-106 106-142 (232)
125 PRK14300 chaperone protein Dna 93.0 0.1 2.2E-06 48.6 3.7 49 169-217 145-205 (372)
126 cd02951 SoxW SoxW family; SoxW 92.9 0.39 8.5E-06 36.8 6.3 57 72-136 18-93 (125)
127 cd02965 HyaE HyaE family; HyaE 92.9 0.56 1.2E-05 36.8 7.2 64 69-142 28-99 (111)
128 cd03078 GST_N_Metaxin1_like GS 92.8 0.66 1.4E-05 33.1 7.0 60 81-150 11-70 (73)
129 cd02984 TRX_PICOT TRX domain, 92.8 0.75 1.6E-05 33.2 7.4 56 72-139 18-81 (97)
130 PF13901 DUF4206: Domain of un 92.6 0.068 1.5E-06 45.8 1.8 88 128-217 102-196 (202)
131 PRK10996 thioredoxin 2; Provis 92.5 0.48 1E-05 37.7 6.6 56 72-139 56-119 (139)
132 cd03004 PDI_a_ERdj5_C PDIa fam 92.3 0.79 1.7E-05 33.7 7.1 54 71-136 22-83 (104)
133 TIGR02187 GlrX_arch Glutaredox 92.3 0.63 1.4E-05 39.6 7.4 61 69-139 20-90 (215)
134 cd03079 GST_N_Metaxin2 GST_N f 92.2 0.58 1.3E-05 34.0 6.1 54 87-149 18-71 (74)
135 cd03020 DsbA_DsbC_DsbG DsbA fa 91.9 1.1 2.4E-05 37.4 8.3 36 67-108 76-113 (197)
136 cd02961 PDI_a_family Protein D 91.8 0.7 1.5E-05 32.6 6.2 53 70-134 17-77 (101)
137 KOG2813 Predicted molecular ch 91.7 0.15 3.3E-06 47.1 3.1 49 169-217 187-263 (406)
138 cd02996 PDI_a_ERp44 PDIa famil 91.6 0.7 1.5E-05 34.5 6.2 55 71-137 21-89 (108)
139 cd02956 ybbN ybbN protein fami 91.5 0.79 1.7E-05 33.1 6.2 56 72-139 16-79 (96)
140 PRK14284 chaperone protein Dna 91.5 0.22 4.8E-06 46.6 4.0 49 169-217 158-218 (391)
141 PLN02395 glutathione S-transfe 91.3 0.63 1.4E-05 38.7 6.3 70 72-150 3-74 (215)
142 cd02994 PDI_a_TMX PDIa family, 91.3 0.85 1.8E-05 33.4 6.3 52 71-134 19-77 (101)
143 PRK14285 chaperone protein Dna 91.3 0.24 5.2E-06 46.0 4.0 49 169-217 146-206 (365)
144 TIGR01126 pdi_dom protein disu 91.1 0.48 1E-05 34.1 4.7 53 70-134 15-75 (102)
145 PRK13972 GSH-dependent disulfi 91.0 0.88 1.9E-05 38.1 6.8 54 72-134 2-57 (215)
146 PRK10357 putative glutathione 90.8 0.53 1.1E-05 38.8 5.3 64 73-145 2-66 (202)
147 cd03003 PDI_a_ERdj5_N PDIa fam 90.7 0.94 2E-05 33.3 6.1 55 71-137 21-83 (101)
148 cd03065 PDI_b_Calsequestrin_N 90.7 1.5 3.2E-05 34.7 7.4 62 68-140 26-101 (120)
149 KOG0910 Thioredoxin-like prote 90.7 0.26 5.7E-06 40.8 3.2 70 58-139 51-128 (150)
150 cd02987 Phd_like_Phd Phosducin 90.6 1.1 2.3E-05 37.4 7.0 60 71-142 85-151 (175)
151 PRK14288 chaperone protein Dna 90.5 0.29 6.3E-06 45.6 3.8 49 169-217 140-199 (369)
152 cd02948 TRX_NDPK TRX domain, T 90.2 1.7 3.7E-05 32.3 7.2 54 72-138 21-83 (102)
153 PRK14286 chaperone protein Dna 90.2 0.28 6.2E-06 45.7 3.4 49 169-217 150-210 (372)
154 cd03075 GST_N_Mu GST_N family, 90.1 1.6 3.5E-05 31.5 6.8 60 87-147 10-76 (82)
155 PRK14298 chaperone protein Dna 90.1 0.32 6.9E-06 45.4 3.7 49 169-217 141-205 (377)
156 cd03001 PDI_a_P5 PDIa family, 90.0 1.5 3.2E-05 31.8 6.6 50 72-133 22-77 (103)
157 cd02962 TMX2 TMX2 family; comp 90.0 1.7 3.7E-05 35.6 7.5 63 72-140 51-122 (152)
158 cd02963 TRX_DnaJ TRX domain, D 89.9 2.2 4.8E-05 32.3 7.7 57 71-139 27-92 (111)
159 KOG4420 Uncharacterized conser 89.9 0.21 4.6E-06 45.1 2.2 86 55-151 13-100 (325)
160 PRK14295 chaperone protein Dna 89.9 0.29 6.3E-06 45.9 3.3 49 169-217 166-226 (389)
161 PRK14287 chaperone protein Dna 89.9 0.32 6.9E-06 45.3 3.5 49 169-217 138-202 (371)
162 PRK14301 chaperone protein Dna 89.9 0.3 6.6E-06 45.5 3.4 49 169-217 144-204 (373)
163 PRK14294 chaperone protein Dna 89.8 0.35 7.7E-06 44.9 3.7 49 169-217 144-204 (366)
164 cd02998 PDI_a_ERp38 PDIa famil 89.6 1.1 2.5E-05 32.3 5.7 52 71-134 21-81 (105)
165 PRK14291 chaperone protein Dna 89.5 0.37 8E-06 45.0 3.7 49 169-217 156-215 (382)
166 PRK11752 putative S-transferas 89.5 1.8 3.8E-05 38.1 7.8 73 66-147 39-123 (264)
167 PRK14282 chaperone protein Dna 89.5 0.36 7.9E-06 44.8 3.5 49 169-217 152-216 (369)
168 PF06953 ArsD: Arsenical resis 89.4 2.7 5.9E-05 33.6 8.0 53 91-146 31-92 (123)
169 cd02959 ERp19 Endoplasmic reti 89.1 0.76 1.6E-05 35.7 4.6 60 72-140 23-91 (117)
170 COG0625 Gst Glutathione S-tran 89.1 0.84 1.8E-05 38.0 5.2 65 73-145 2-68 (211)
171 PRK14290 chaperone protein Dna 89.0 0.43 9.4E-06 44.3 3.7 49 169-217 149-212 (365)
172 cd02999 PDI_a_ERp44_like PDIa 89.0 1.7 3.8E-05 32.4 6.4 51 71-133 21-77 (100)
173 PRK14289 chaperone protein Dna 88.8 0.41 8.9E-06 44.7 3.4 49 169-217 154-218 (386)
174 TIGR02349 DnaJ_bact chaperone 88.7 0.42 9.1E-06 44.0 3.3 49 169-217 143-207 (354)
175 PF00684 DnaJ_CXXCXGXG: DnaJ c 88.7 0.61 1.3E-05 32.8 3.5 38 168-209 14-66 (66)
176 PF10865 DUF2703: Domain of un 88.5 5.5 0.00012 31.7 9.1 81 83-196 12-104 (120)
177 PTZ00057 glutathione s-transfe 88.4 3.9 8.4E-05 34.1 8.8 70 71-147 4-77 (205)
178 PRK14279 chaperone protein Dna 88.3 0.45 9.8E-06 44.7 3.3 49 169-217 173-233 (392)
179 cd03005 PDI_a_ERp46 PDIa famil 88.2 1.5 3.3E-05 31.6 5.5 56 71-138 19-85 (102)
180 COG3118 Thioredoxin domain-con 87.9 1.1 2.3E-05 41.1 5.4 63 70-143 44-114 (304)
181 PRK14280 chaperone protein Dna 87.8 0.57 1.2E-05 43.7 3.7 49 169-217 143-207 (376)
182 PRK14293 chaperone protein Dna 87.8 0.49 1.1E-05 44.0 3.2 49 169-217 143-207 (374)
183 PRK14292 chaperone protein Dna 87.8 0.51 1.1E-05 43.8 3.3 49 169-217 139-204 (371)
184 KOG1422 Intracellular Cl- chan 87.2 1.4 3E-05 38.6 5.4 61 85-150 20-82 (221)
185 PRK14297 chaperone protein Dna 87.2 0.56 1.2E-05 43.8 3.3 49 169-217 148-212 (380)
186 COG0178 UvrA Excinuclease ATPa 87.1 0.56 1.2E-05 48.3 3.4 55 137-192 696-765 (935)
187 PRK10542 glutathionine S-trans 86.9 1.5 3.3E-05 35.9 5.4 67 73-148 2-72 (201)
188 PRK14296 chaperone protein Dna 86.9 0.63 1.4E-05 43.4 3.4 49 169-217 149-213 (372)
189 cd02972 DsbA_family DsbA famil 86.7 1.9 4.2E-05 30.0 5.2 32 72-109 1-38 (98)
190 PF02798 GST_N: Glutathione S- 86.6 2.4 5.2E-05 30.0 5.6 57 88-146 11-71 (76)
191 PRK14276 chaperone protein Dna 86.5 0.68 1.5E-05 43.2 3.4 49 169-217 146-210 (380)
192 PRK14278 chaperone protein Dna 86.5 0.79 1.7E-05 42.8 3.9 49 169-217 139-203 (378)
193 PRK14296 chaperone protein Dna 86.4 0.71 1.5E-05 43.1 3.5 38 169-211 166-218 (372)
194 cd03002 PDI_a_MPD1_like PDI fa 86.0 2.3 5.1E-05 31.2 5.6 54 71-134 21-80 (109)
195 cd02950 TxlA TRX-like protein 85.6 2.1 4.6E-05 34.2 5.4 58 72-139 24-90 (142)
196 TIGR02642 phage_xxxx uncharact 85.6 0.68 1.5E-05 39.6 2.7 27 169-195 99-130 (186)
197 PRK14285 chaperone protein Dna 85.3 0.85 1.8E-05 42.4 3.4 38 169-211 163-211 (365)
198 PRK14282 chaperone protein Dna 85.3 0.99 2.1E-05 42.0 3.8 39 169-212 169-222 (369)
199 cd02952 TRP14_like Human TRX-r 85.0 2.9 6.3E-05 33.0 5.8 47 86-134 40-96 (119)
200 PRK14277 chaperone protein Dna 84.9 0.89 1.9E-05 42.6 3.4 49 169-217 155-219 (386)
201 cd02997 PDI_a_PDIR PDIa family 84.8 2.2 4.8E-05 30.8 4.9 58 71-138 20-87 (104)
202 COG3019 Predicted metal-bindin 84.7 4.2 9.1E-05 33.5 6.7 74 69-153 25-104 (149)
203 PRK14280 chaperone protein Dna 84.6 0.87 1.9E-05 42.5 3.1 38 169-211 160-212 (376)
204 PRK14283 chaperone protein Dna 84.4 1 2.2E-05 42.0 3.4 49 169-217 146-210 (378)
205 cd03006 PDI_a_EFP1_N PDIa fami 84.4 2.4 5.2E-05 32.9 5.1 56 71-137 32-95 (113)
206 PRK14284 chaperone protein Dna 84.3 0.94 2E-05 42.5 3.2 38 169-211 175-223 (391)
207 PTZ00037 DnaJ_C chaperone prot 84.1 0.97 2.1E-05 43.0 3.3 49 169-217 150-215 (421)
208 PRK14288 chaperone protein Dna 84.1 1.1 2.3E-05 41.8 3.5 38 169-211 156-204 (369)
209 PRK14301 chaperone protein Dna 84.1 0.88 1.9E-05 42.4 2.9 38 169-211 161-209 (373)
210 cd03000 PDI_a_TMX3 PDIa family 84.0 3.9 8.4E-05 30.2 5.9 53 72-136 19-81 (104)
211 PRK14281 chaperone protein Dna 84.0 0.99 2.1E-05 42.4 3.2 49 169-217 163-226 (397)
212 PRK14276 chaperone protein Dna 83.8 1 2.2E-05 42.1 3.2 38 169-211 163-215 (380)
213 PRK14279 chaperone protein Dna 83.7 1.1 2.3E-05 42.2 3.3 38 169-211 190-238 (392)
214 PTZ00443 Thioredoxin domain-co 83.6 6 0.00013 34.5 7.8 57 71-139 55-119 (224)
215 PRK10767 chaperone protein Dna 83.6 1.1 2.4E-05 41.6 3.3 38 169-211 159-207 (371)
216 PRK14297 chaperone protein Dna 83.6 1.1 2.5E-05 41.7 3.5 38 169-211 165-217 (380)
217 PF11009 DUF2847: Protein of u 83.4 5.4 0.00012 31.1 6.6 68 68-141 18-93 (105)
218 PF13719 zinc_ribbon_5: zinc-r 83.2 1 2.2E-05 28.3 2.1 28 180-207 2-33 (37)
219 PRK14277 chaperone protein Dna 83.2 1.1 2.4E-05 42.0 3.2 38 169-211 172-224 (386)
220 COG5494 Predicted thioredoxin/ 83.0 5.6 0.00012 35.1 7.2 67 71-149 12-84 (265)
221 PLN00410 U5 snRNP protein, DIM 82.9 5.3 0.00012 32.6 6.7 54 72-137 27-89 (142)
222 PRK14278 chaperone protein Dna 82.8 1.1 2.5E-05 41.7 3.1 38 169-211 156-208 (378)
223 PRK14286 chaperone protein Dna 82.8 1.1 2.4E-05 41.8 3.0 39 169-212 167-216 (372)
224 cd02993 PDI_a_APS_reductase PD 82.7 4.1 9E-05 30.5 5.7 53 70-133 23-83 (109)
225 PRK14298 chaperone protein Dna 82.7 1.3 2.9E-05 41.4 3.5 38 169-211 158-210 (377)
226 PRK14300 chaperone protein Dna 82.6 1.2 2.7E-05 41.4 3.3 38 169-211 162-210 (372)
227 COG3634 AhpF Alkyl hydroperoxi 81.5 2 4.3E-05 40.8 4.2 63 68-142 116-183 (520)
228 cd02986 DLP Dim1 family, Dim1- 81.5 4.2 9.1E-05 32.1 5.4 60 69-139 14-81 (114)
229 PRK14294 chaperone protein Dna 81.3 1.4 3E-05 40.9 3.1 38 169-211 161-209 (366)
230 PTZ00037 DnaJ_C chaperone prot 81.3 1.5 3.2E-05 41.8 3.3 41 169-212 166-221 (421)
231 PRK14295 chaperone protein Dna 81.3 1.3 2.9E-05 41.5 3.0 38 169-211 183-231 (389)
232 PRK14290 chaperone protein Dna 81.2 1.5 3.2E-05 40.8 3.2 38 169-211 165-217 (365)
233 TIGR02349 DnaJ_bact chaperone 81.0 1.6 3.4E-05 40.2 3.3 39 169-212 160-213 (354)
234 TIGR00595 priA primosomal prot 81.0 1.6 3.4E-05 42.4 3.4 48 168-218 212-261 (505)
235 cd02992 PDI_a_QSOX PDIa family 81.0 3.8 8.1E-05 31.4 5.0 54 71-134 22-84 (114)
236 PRK14281 chaperone protein Dna 80.9 1.6 3.5E-05 41.0 3.4 38 169-211 179-231 (397)
237 PRK14289 chaperone protein Dna 80.9 1.6 3.4E-05 40.8 3.3 39 168-211 170-223 (386)
238 cd02995 PDI_a_PDI_a'_C PDIa fa 80.5 4.6 9.9E-05 29.0 5.1 52 70-134 20-79 (104)
239 PRK13728 conjugal transfer pro 80.2 5.8 0.00013 33.7 6.2 57 71-134 72-142 (181)
240 KOG0907 Thioredoxin [Posttrans 80.0 6.9 0.00015 30.1 6.1 59 69-138 21-86 (106)
241 KOG4244 Failed axon connection 79.8 2.2 4.7E-05 38.6 3.7 51 86-146 61-111 (281)
242 PF15616 TerY-C: TerY-C metal 79.4 2.1 4.6E-05 34.7 3.2 38 169-210 77-116 (131)
243 KOG1695 Glutathione S-transfer 79.3 5 0.00011 34.7 5.7 66 72-146 4-69 (206)
244 COG2999 GrxB Glutaredoxin 2 [P 79.1 2 4.3E-05 37.0 3.0 61 85-149 8-69 (215)
245 COG3340 PepE Peptidase E [Amin 78.3 18 0.00038 31.9 8.7 83 70-163 32-117 (224)
246 PF13728 TraF: F plasmid trans 78.2 7.4 0.00016 33.6 6.4 58 69-134 121-189 (215)
247 PF07315 DUF1462: Protein of u 78.2 9 0.00019 29.3 6.0 43 100-142 37-81 (93)
248 cd03023 DsbA_Com1_like DsbA fa 78.0 2.3 4.9E-05 32.8 2.9 56 91-148 87-149 (154)
249 cd03009 TryX_like_TryX_NRX Try 77.8 15 0.00033 28.0 7.5 36 71-111 20-64 (131)
250 cd02955 SSP411 TRX domain, SSP 77.7 8.8 0.00019 30.3 6.2 64 70-140 16-95 (124)
251 cd02982 PDI_b'_family Protein 77.2 7.3 0.00016 28.2 5.4 51 72-134 16-74 (103)
252 PF09297 zf-NADH-PPase: NADH p 76.6 2 4.2E-05 26.0 1.7 24 183-207 6-29 (32)
253 PRK14873 primosome assembly pr 76.5 2.9 6.3E-05 42.1 3.9 48 168-218 382-430 (665)
254 PRK14287 chaperone protein Dna 76.5 2 4.4E-05 40.0 2.6 38 169-211 155-207 (371)
255 PLN03165 chaperone protein dna 76.4 2.2 4.8E-05 33.6 2.4 20 171-190 77-96 (111)
256 cd03022 DsbA_HCCA_Iso DsbA fam 75.9 3.4 7.3E-05 33.5 3.5 57 91-148 125-187 (192)
257 PRK14291 chaperone protein Dna 75.2 3.2 6.9E-05 38.8 3.6 37 169-211 173-220 (382)
258 PF06764 DUF1223: Protein of u 74.7 5.5 0.00012 34.3 4.6 67 72-144 2-87 (202)
259 PRK14293 chaperone protein Dna 74.5 3 6.4E-05 38.9 3.2 38 169-211 160-212 (374)
260 cd02988 Phd_like_VIAF Phosduci 74.4 9 0.0002 32.5 5.9 55 71-140 104-166 (192)
261 TIGR02642 phage_xxxx uncharact 74.3 2.3 5E-05 36.3 2.2 31 179-212 98-128 (186)
262 PRK14283 chaperone protein Dna 74.3 3.5 7.5E-05 38.5 3.6 38 169-211 163-215 (378)
263 PRK14292 chaperone protein Dna 74.3 3.2 7E-05 38.5 3.4 38 169-211 157-209 (371)
264 PTZ00062 glutaredoxin; Provisi 74.1 11 0.00025 32.4 6.5 55 69-142 17-78 (204)
265 cd03010 TlpA_like_DsbE TlpA-li 74.0 21 0.00045 27.0 7.4 29 85-113 36-68 (127)
266 KOG0712 Molecular chaperone (D 73.9 3.1 6.8E-05 38.7 3.1 49 169-217 127-193 (337)
267 PF10568 Tom37: Outer mitochon 73.4 12 0.00026 26.8 5.5 54 85-148 13-70 (72)
268 PF08271 TF_Zn_Ribbon: TFIIB z 73.3 3.7 8.1E-05 26.3 2.5 24 182-205 2-25 (43)
269 PF14595 Thioredoxin_9: Thiore 73.0 1.4 2.9E-05 35.2 0.5 58 68-134 41-103 (129)
270 PRK05580 primosome assembly pr 72.7 3.5 7.6E-05 41.4 3.4 48 168-218 380-429 (679)
271 COG0484 DnaJ DnaJ-class molecu 72.3 4.3 9.3E-05 38.3 3.6 39 168-211 158-209 (371)
272 cd02964 TryX_like_family Trypa 71.3 21 0.00046 27.4 6.9 36 71-111 19-63 (132)
273 PF13462 Thioredoxin_4: Thiore 70.6 8.1 0.00018 30.2 4.5 22 126-147 134-155 (162)
274 PRK00293 dipZ thiol:disulfide 70.4 13 0.00029 36.6 6.8 56 71-134 476-540 (571)
275 KOG0868 Glutathione S-transfer 70.2 9 0.0002 33.1 4.8 72 71-150 5-79 (217)
276 PF11331 DUF3133: Protein of u 70.1 2.4 5.2E-05 28.4 1.1 33 176-208 2-40 (46)
277 TIGR02740 TraF-like TraF-like 70.0 11 0.00025 33.5 5.7 57 70-134 168-235 (271)
278 COG1198 PriA Primosomal protei 69.4 5.7 0.00012 40.5 4.0 48 168-218 434-483 (730)
279 PF14205 Cys_rich_KTR: Cystein 68.6 5.2 0.00011 27.8 2.5 34 178-211 2-40 (55)
280 TIGR00630 uvra excinuclease AB 68.5 2.7 5.8E-05 44.0 1.5 25 168-192 735-771 (924)
281 PRK15412 thiol:disulfide inter 67.0 32 0.0007 28.3 7.5 29 85-113 79-110 (185)
282 PRK00635 excinuclease ABC subu 66.7 5 0.00011 44.8 3.2 54 138-192 1574-1642(1809)
283 cd03019 DsbA_DsbA DsbA family, 65.4 6 0.00013 31.5 2.8 54 90-145 100-160 (178)
284 TIGR00385 dsbE periplasmic pro 65.3 35 0.00075 27.7 7.3 35 71-110 65-102 (173)
285 smart00834 CxxC_CXXC_SSSS Puta 65.1 4.6 0.0001 25.0 1.6 25 183-207 8-34 (41)
286 PF13717 zinc_ribbon_4: zinc-r 64.6 4.2 9.1E-05 25.5 1.3 27 181-207 3-33 (36)
287 PF13899 Thioredoxin_7: Thiore 63.8 25 0.00054 24.8 5.5 53 70-134 18-79 (82)
288 PF14354 Lar_restr_allev: Rest 63.8 5.5 0.00012 27.1 1.9 27 180-207 3-37 (61)
289 KOG1829 Uncharacterized conser 62.4 5.5 0.00012 39.6 2.3 130 73-207 384-539 (580)
290 TIGR00424 APS_reduc 5'-adenyly 62.0 22 0.00048 34.4 6.3 56 71-136 374-438 (463)
291 cd03008 TryX_like_RdCVF Trypar 61.1 40 0.00086 27.4 6.8 23 71-98 27-49 (146)
292 PRK00564 hypA hydrogenase nick 60.8 8.9 0.00019 30.1 2.9 24 169-192 71-100 (117)
293 PF11287 DUF3088: Protein of u 60.6 19 0.00042 28.4 4.7 52 82-136 20-76 (112)
294 PF01323 DSBA: DSBA-like thior 60.3 4.9 0.00011 32.5 1.4 58 90-148 124-188 (193)
295 COG1107 Archaea-specific RecJ- 58.9 7.7 0.00017 38.9 2.6 42 169-210 53-106 (715)
296 TIGR02098 MJ0042_CXXC MJ0042 f 58.4 9 0.00019 23.6 2.1 27 181-207 3-33 (38)
297 PLN02309 5'-adenylylsulfate re 58.1 20 0.00044 34.6 5.3 53 70-133 367-427 (457)
298 PRK03147 thiol-disulfide oxido 58.0 46 0.00099 26.3 6.7 28 85-112 72-106 (173)
299 PTZ00102 disulphide isomerase; 57.7 31 0.00067 32.2 6.5 56 70-137 51-117 (477)
300 KOG0867 Glutathione S-transfer 57.3 33 0.00073 29.4 6.1 69 71-147 2-72 (226)
301 COG4837 Uncharacterized protei 57.3 38 0.00083 26.2 5.6 69 68-141 3-87 (106)
302 PF03575 Peptidase_S51: Peptid 57.1 26 0.00057 28.0 5.1 64 89-161 2-65 (154)
303 TIGR01130 ER_PDI_fam protein d 57.1 34 0.00075 31.3 6.5 56 71-138 21-87 (462)
304 PRK10954 periplasmic protein d 56.4 15 0.00032 31.0 3.7 53 90-144 124-183 (207)
305 TIGR03601 B_an_ocin probable h 56.4 19 0.00041 26.3 3.7 10 113-122 3-12 (79)
306 PRK04023 DNA polymerase II lar 55.9 11 0.00023 40.0 3.1 44 168-217 625-670 (1121)
307 PF04216 FdhE: Protein involve 55.2 6.4 0.00014 35.2 1.3 62 143-209 138-221 (290)
308 smart00653 eIF2B_5 domain pres 55.0 11 0.00024 29.5 2.4 28 179-206 79-108 (110)
309 PRK03564 formate dehydrogenase 54.8 14 0.0003 34.0 3.5 37 168-209 186-236 (309)
310 PHA00626 hypothetical protein 54.4 9.6 0.00021 26.7 1.8 17 172-188 3-19 (59)
311 PF13462 Thioredoxin_4: Thiore 54.0 24 0.00051 27.5 4.3 42 66-113 10-59 (162)
312 PF08792 A2L_zn_ribbon: A2L zi 53.6 7.7 0.00017 24.0 1.1 24 182-206 5-28 (33)
313 PF01873 eIF-5_eIF-2B: Domain 52.8 8.5 0.00018 30.8 1.5 43 150-207 78-122 (125)
314 cd03031 GRX_GRX_like Glutaredo 52.5 11 0.00024 30.8 2.3 13 181-193 100-112 (147)
315 PF12760 Zn_Tnp_IS1595: Transp 52.4 16 0.00035 23.7 2.6 24 183-206 21-44 (46)
316 PRK03988 translation initiatio 52.4 16 0.00035 29.7 3.2 33 179-211 101-135 (138)
317 PRK14714 DNA polymerase II lar 52.3 11 0.00025 40.6 2.8 43 169-217 667-716 (1337)
318 PRK11657 dsbG disulfide isomer 51.9 25 0.00053 31.0 4.5 35 68-108 117-155 (251)
319 TIGR00311 aIF-2beta translatio 50.1 19 0.00041 29.1 3.2 32 179-210 96-129 (133)
320 TIGR02738 TrbB type-F conjugat 49.6 80 0.0017 25.7 6.9 35 69-109 51-89 (153)
321 cd02970 PRX_like2 Peroxiredoxi 49.4 1E+02 0.0022 23.4 7.2 45 85-133 35-86 (149)
322 cd03023 DsbA_Com1_like DsbA fa 48.9 25 0.00053 26.8 3.6 37 67-109 4-45 (154)
323 TIGR02739 TraF type-F conjugat 48.7 29 0.00063 31.0 4.4 59 68-134 150-219 (256)
324 PF07092 DUF1356: Protein of u 48.2 12 0.00026 33.3 1.9 29 168-196 26-54 (238)
325 smart00778 Prim_Zn_Ribbon Zinc 48.0 15 0.00031 23.4 1.8 29 179-207 2-33 (37)
326 cd02958 UAS UAS family; UAS is 47.9 35 0.00076 25.6 4.3 57 70-135 18-84 (114)
327 PRK12495 hypothetical protein; 47.8 28 0.00061 30.7 4.1 27 168-208 41-67 (226)
328 PRK00349 uvrA excinuclease ABC 47.6 9.7 0.00021 40.0 1.4 25 168-192 737-773 (943)
329 cd03011 TlpA_like_ScsD_MtbDsbE 45.5 15 0.00032 27.4 1.9 14 85-98 31-44 (123)
330 PF04134 DUF393: Protein of un 44.9 61 0.0013 24.2 5.2 68 85-153 6-78 (114)
331 cd03019 DsbA_DsbA DsbA family, 44.4 39 0.00085 26.7 4.3 36 68-109 15-56 (178)
332 cd03146 GAT1_Peptidase_E Type 44.3 1.1E+02 0.0023 25.9 7.2 80 69-161 30-110 (212)
333 PRK00398 rpoP DNA-directed RNA 43.6 18 0.0004 23.4 1.8 9 199-207 21-29 (46)
334 PF09413 DUF2007: Domain of un 42.9 30 0.00066 23.6 3.0 52 72-136 1-52 (67)
335 PF09369 DUF1998: Domain of un 41.9 17 0.00038 26.2 1.7 39 126-164 32-70 (84)
336 cd02967 mauD Methylamine utili 41.9 1.3E+02 0.0029 21.8 6.6 14 85-98 32-45 (114)
337 PRK03681 hypA hydrogenase nick 41.8 30 0.00065 27.0 3.1 22 168-189 69-96 (114)
338 PRK12336 translation initiatio 41.5 29 0.00063 29.7 3.2 32 179-210 97-130 (201)
339 smart00659 RPOLCX RNA polymera 40.9 29 0.00063 22.7 2.4 26 182-209 4-29 (44)
340 PRK05282 (alpha)-aspartyl dipe 40.0 1.4E+02 0.003 26.2 7.3 77 72-161 33-109 (233)
341 PF13905 Thioredoxin_8: Thiore 39.8 90 0.002 22.0 5.2 14 85-98 12-25 (95)
342 TIGR00108 eRF peptide chain re 39.6 10 0.00022 35.9 0.2 55 135-191 290-357 (409)
343 cd02966 TlpA_like_family TlpA- 39.5 1.3E+02 0.0028 20.9 7.0 34 72-111 23-63 (116)
344 smart00594 UAS UAS domain. 39.1 1.2E+02 0.0026 23.2 6.1 54 71-134 29-92 (122)
345 TIGR01130 ER_PDI_fam protein d 38.8 91 0.002 28.6 6.3 51 70-134 366-425 (462)
346 PF00578 AhpC-TSA: AhpC/TSA fa 38.5 1.4E+02 0.0031 21.8 6.4 46 70-119 26-78 (124)
347 PF08534 Redoxin: Redoxin; In 38.4 1.7E+02 0.0036 22.4 6.9 44 72-120 32-82 (146)
348 PRK00635 excinuclease ABC subu 38.2 28 0.00061 39.2 3.2 54 138-192 687-752 (1809)
349 PRK00420 hypothetical protein; 38.2 41 0.00088 26.5 3.3 12 169-180 23-34 (112)
350 PLN02189 cellulose synthase 38.1 18 0.00039 38.4 1.6 39 168-206 33-83 (1040)
351 TIGR02661 MauD methylamine deh 38.0 94 0.002 25.7 5.7 25 85-109 85-113 (189)
352 TIGR02605 CxxC_CxxC_SSSS putat 37.9 22 0.00048 23.3 1.6 26 183-208 8-35 (52)
353 cd03024 DsbA_FrnE DsbA family, 37.4 95 0.0021 25.2 5.6 22 126-147 173-195 (201)
354 PTZ00102 disulphide isomerase; 37.3 55 0.0012 30.5 4.6 51 71-133 378-436 (477)
355 cd01480 vWA_collagen_alpha_1-V 37.0 1.8E+02 0.004 23.6 7.3 67 69-137 109-184 (186)
356 KOG2324 Prolyl-tRNA synthetase 36.7 25 0.00055 33.5 2.2 34 179-212 226-260 (457)
357 KOG4218 Nuclear hormone recept 36.5 15 0.00033 34.6 0.7 34 169-202 15-54 (475)
358 PF03691 UPF0167: Uncharacteri 36.1 45 0.00098 28.3 3.5 89 68-162 31-137 (176)
359 KOG2813 Predicted molecular ch 35.9 23 0.0005 33.1 1.8 14 197-210 254-267 (406)
360 PRK12380 hydrogenase nickel in 35.8 37 0.0008 26.4 2.7 23 168-190 69-96 (113)
361 KOG4684 Uncharacterized conser 35.8 15 0.00032 32.5 0.5 19 199-217 170-196 (275)
362 KOG2767 Translation initiation 35.8 34 0.00074 32.3 2.9 57 135-211 71-130 (400)
363 PF03604 DNA_RNApol_7kD: DNA d 35.5 23 0.0005 21.7 1.2 24 183-208 3-26 (32)
364 COG4332 Uncharacterized protei 35.3 27 0.00059 30.0 2.0 37 168-208 16-58 (203)
365 PF04566 RNA_pol_Rpb2_4: RNA p 35.3 39 0.00085 23.7 2.5 15 132-146 1-15 (63)
366 PF08273 Prim_Zn_Ribbon: Zinc- 35.2 43 0.00093 21.6 2.5 28 179-206 2-33 (40)
367 PRK00432 30S ribosomal protein 35.1 27 0.00058 23.5 1.6 23 182-206 22-44 (50)
368 PRK04023 DNA polymerase II lar 35.0 26 0.00057 37.2 2.2 15 91-105 506-520 (1121)
369 PRK09437 bcp thioredoxin-depen 34.5 1.6E+02 0.0034 22.9 6.3 43 71-118 32-82 (154)
370 PRK11509 hydrogenase-1 operon 34.3 1.2E+02 0.0026 24.5 5.5 77 53-143 23-108 (132)
371 cd03145 GAT1_cyanophycinase Ty 34.2 2.6E+02 0.0057 23.7 8.0 48 69-119 29-82 (217)
372 PF00731 AIRC: AIR carboxylase 33.9 82 0.0018 26.0 4.6 38 71-112 2-39 (150)
373 PRK13703 conjugal pilus assemb 33.8 25 0.00054 31.3 1.6 59 68-134 143-212 (248)
374 TIGR00595 priA primosomal prot 33.7 29 0.00063 33.7 2.2 34 169-208 222-262 (505)
375 cd03017 PRX_BCP Peroxiredoxin 33.7 1.9E+02 0.0041 21.8 6.5 43 71-118 25-75 (140)
376 PRK14018 trifunctional thiored 33.6 1.5E+02 0.0033 29.2 7.2 14 85-98 67-80 (521)
377 PRK00762 hypA hydrogenase nick 33.1 43 0.00093 26.5 2.7 7 169-176 70-76 (124)
378 PF09788 Tmemb_55A: Transmembr 33.0 24 0.00051 31.7 1.3 19 199-217 157-184 (256)
379 COG2143 Thioredoxin-related pr 32.8 49 0.0011 28.1 3.1 71 58-137 33-125 (182)
380 PLN02234 1-deoxy-D-xylulose-5- 32.3 1E+02 0.0022 31.2 5.8 78 70-158 545-628 (641)
381 PF01096 TFIIS_C: Transcriptio 31.8 33 0.00071 21.7 1.5 27 181-207 1-36 (39)
382 PF08646 Rep_fac-A_C: Replicat 31.8 34 0.00074 27.1 2.0 29 178-208 16-46 (146)
383 cd00079 HELICc Helicase superf 31.2 2.1E+02 0.0045 20.8 7.6 47 69-122 28-74 (131)
384 COG3011 Predicted thiol-disulf 31.0 1.7E+02 0.0037 23.8 6.0 67 70-146 9-80 (137)
385 TIGR00100 hypA hydrogenase nic 31.0 50 0.0011 25.7 2.8 23 168-190 69-96 (115)
386 PF01155 HypA: Hydrogenase exp 30.7 32 0.00069 26.7 1.6 23 169-191 70-97 (113)
387 PRK14890 putative Zn-ribbon RN 30.7 30 0.00065 24.3 1.3 18 199-216 25-42 (59)
388 COG4445 MiaE Hydroxylase for s 30.1 8.4 0.00018 32.8 -1.8 66 87-158 73-138 (203)
389 PF13408 Zn_ribbon_recom: Reco 30.0 83 0.0018 20.4 3.4 35 179-214 4-40 (58)
390 PF01927 Mut7-C: Mut7-C RNAse 29.8 30 0.00066 27.8 1.4 46 153-207 73-132 (147)
391 PLN02436 cellulose synthase A 29.8 30 0.00065 36.9 1.7 39 168-206 35-85 (1094)
392 PF04236 Transp_Tc5_C: Tc5 tra 29.5 32 0.00069 24.4 1.3 20 198-217 26-47 (63)
393 COG2835 Uncharacterized conser 29.1 56 0.0012 23.1 2.4 28 180-208 8-35 (60)
394 COG0526 TrxA Thiol-disulfide i 29.1 1.2E+02 0.0026 20.5 4.3 36 85-120 43-85 (127)
395 PRK05096 guanosine 5'-monophos 29.0 1.1E+02 0.0023 28.8 4.9 63 87-152 108-172 (346)
396 TIGR03676 aRF1/eRF1 peptide ch 28.9 24 0.00052 33.4 0.8 55 135-191 286-353 (403)
397 PRK02935 hypothetical protein; 28.9 37 0.0008 26.7 1.6 26 180-208 70-95 (110)
398 COG1571 Predicted DNA-binding 28.8 27 0.00059 33.5 1.1 154 43-207 186-375 (421)
399 COG2260 Predicted Zn-ribbon RN 28.6 28 0.00061 24.5 0.8 19 199-217 5-24 (59)
400 KOG3217 Protein tyrosine phosp 28.4 79 0.0017 26.4 3.6 71 69-146 44-141 (159)
401 PLN02638 cellulose synthase A 27.8 30 0.00065 37.0 1.3 39 168-206 16-66 (1079)
402 KOG2501 Thioredoxin, nucleored 27.7 1.6E+02 0.0036 24.5 5.4 37 71-112 35-78 (157)
403 cd03129 GAT1_Peptidase_E_like 27.7 3.6E+02 0.0078 22.4 7.8 80 69-162 29-112 (210)
404 PRK03824 hypA hydrogenase nick 27.6 58 0.0013 26.1 2.7 11 198-208 106-116 (135)
405 PF03833 PolC_DP2: DNA polymer 27.3 21 0.00045 37.2 0.0 43 168-216 654-698 (900)
406 PLN02790 transketolase 27.2 1.9E+02 0.0042 29.0 6.8 86 70-162 541-640 (654)
407 PF14803 Nudix_N_2: Nudix N-te 27.1 52 0.0011 20.4 1.8 25 183-207 3-30 (34)
408 TIGR03439 methyl_EasF probable 27.0 1.5E+02 0.0032 27.3 5.5 26 86-111 85-115 (319)
409 COG1096 Predicted RNA-binding 26.5 53 0.0012 28.2 2.4 28 177-207 146-173 (188)
410 TIGR02069 cyanophycinase cyano 26.3 4E+02 0.0087 23.4 8.0 38 69-109 28-66 (250)
411 PRK09710 lar restriction allev 26.2 72 0.0016 22.8 2.6 28 181-208 7-36 (64)
412 PLN02412 probable glutathione 26.2 2.3E+02 0.0049 22.9 6.0 54 71-133 31-100 (167)
413 PRK14892 putative transcriptio 26.1 37 0.0008 26.2 1.2 8 180-187 21-28 (99)
414 PF10122 Mu-like_Com: Mu-like 26.1 25 0.00055 24.0 0.3 8 199-206 24-31 (51)
415 PF11023 DUF2614: Protein of u 25.5 35 0.00075 27.1 1.0 28 179-209 68-95 (114)
416 smart00440 ZnF_C2C2 C2C2 Zinc 25.5 68 0.0015 20.3 2.2 26 182-207 2-36 (40)
417 cd03012 TlpA_like_DipZ_like Tl 25.5 2.6E+02 0.0056 21.0 5.9 21 71-96 25-45 (126)
418 TIGR00757 RNaseEG ribonuclease 25.4 1.2E+02 0.0026 28.9 4.8 15 88-102 312-326 (414)
419 TIGR03655 anti_R_Lar restricti 25.3 69 0.0015 21.3 2.3 29 181-209 2-36 (53)
420 KOG4022 Dihydropteridine reduc 25.2 3.6E+02 0.0077 23.4 7.0 78 68-154 2-99 (236)
421 COG1107 Archaea-specific RecJ- 25.1 60 0.0013 32.8 2.7 12 181-192 54-65 (715)
422 KOG2041 WD40 repeat protein [G 25.0 82 0.0018 32.8 3.7 51 168-218 1116-1182(1189)
423 COG1365 Predicted ATPase (PP-l 24.9 1.3E+02 0.0027 26.9 4.4 45 70-121 61-105 (255)
424 PF04056 Ssl1: Ssl1-like; Int 24.6 2.7E+02 0.0059 23.8 6.4 57 64-122 96-152 (193)
425 KOG3192 Mitochondrial J-type c 24.5 93 0.002 26.2 3.3 33 90-122 73-105 (168)
426 PF01323 DSBA: DSBA-like thior 24.4 1.4E+02 0.003 23.9 4.4 37 71-113 1-42 (193)
427 TIGR00147 lipid kinase, YegS/R 24.3 4.8E+02 0.01 22.7 8.1 38 71-108 3-40 (293)
428 PF03227 GILT: Gamma interfero 24.2 88 0.0019 23.7 3.0 15 71-91 2-16 (108)
429 PLN02400 cellulose synthase 24.1 50 0.0011 35.4 2.1 39 168-206 35-85 (1085)
430 PRK04011 peptide chain release 23.8 34 0.00073 32.5 0.7 56 135-192 294-362 (411)
431 TIGR03143 AhpF_homolog putativ 23.8 1.9E+02 0.004 28.2 5.9 51 72-134 370-425 (555)
432 cd00340 GSH_Peroxidase Glutath 23.8 1.7E+02 0.0038 22.9 4.8 8 85-93 33-40 (152)
433 PF09788 Tmemb_55A: Transmembr 23.7 62 0.0014 29.1 2.3 35 176-210 61-96 (256)
434 TIGR01562 FdhE formate dehydro 23.5 64 0.0014 29.6 2.4 36 168-208 183-233 (305)
435 PRK07220 DNA topoisomerase I; 23.3 95 0.0021 31.8 3.9 48 169-217 589-664 (740)
436 PRK00415 rps27e 30S ribosomal 23.2 88 0.0019 22.0 2.6 27 181-207 12-38 (59)
437 PF06677 Auto_anti-p27: Sjogre 23.2 51 0.0011 21.3 1.3 19 156-178 8-26 (41)
438 PLN02399 phospholipid hydroper 23.1 2.2E+02 0.0047 25.0 5.6 31 72-108 103-140 (236)
439 PF09633 DUF2023: Protein of u 22.8 2.6E+02 0.0056 21.8 5.3 48 68-122 13-68 (101)
440 PF12132 DUF3587: Protein of u 22.7 88 0.0019 27.1 3.0 77 70-161 18-102 (199)
441 PF14599 zinc_ribbon_6: Zinc-r 22.6 62 0.0013 22.8 1.7 29 178-207 28-56 (61)
442 PHA03075 glutaredoxin-like pro 22.3 1.2E+02 0.0025 24.4 3.4 31 70-106 3-33 (123)
443 PRK14714 DNA polymerase II lar 22.3 61 0.0013 35.4 2.3 38 169-208 679-718 (1337)
444 COG5082 AIR1 Arginine methyltr 22.2 48 0.0011 28.5 1.3 43 168-211 59-109 (190)
445 PF06110 DUF953: Eukaryotic pr 22.0 1.5E+02 0.0032 23.5 3.9 64 69-134 19-95 (119)
446 PTZ00056 glutathione peroxidas 21.9 3E+02 0.0066 23.0 6.2 24 85-108 50-80 (199)
447 PF02780 Transketolase_C: Tran 21.6 1.4E+02 0.0029 22.8 3.7 44 69-117 9-56 (124)
448 cd03271 ABC_UvrA_II The excisi 21.5 58 0.0013 28.9 1.7 12 131-142 72-83 (261)
449 PF14369 zf-RING_3: zinc-finge 21.5 79 0.0017 19.6 1.8 8 199-206 21-28 (35)
450 PF09822 ABC_transp_aux: ABC-t 21.5 2.7E+02 0.0058 24.1 5.9 50 71-122 28-84 (271)
451 KOG4623 Uncharacterized conser 21.2 40 0.00086 33.3 0.7 28 179-206 27-54 (611)
452 PTZ00256 glutathione peroxidas 21.0 2.9E+02 0.0062 22.6 5.7 24 85-108 52-82 (183)
453 PF04438 zf-HIT: HIT zinc fing 20.8 41 0.00089 20.2 0.4 16 201-216 4-19 (30)
454 PF08442 ATP-grasp_2: ATP-gras 20.7 51 0.0011 28.2 1.2 49 91-140 6-56 (202)
455 PF07295 DUF1451: Protein of u 20.7 85 0.0018 25.7 2.4 34 177-211 109-142 (146)
456 cd03018 PRX_AhpE_like Peroxire 20.6 3.5E+02 0.0075 20.5 5.9 26 85-110 40-72 (149)
457 cd02971 PRX_family Peroxiredox 20.5 3.6E+02 0.0077 20.1 5.8 35 70-109 23-65 (140)
458 PF14949 ARF7EP_C: ARF7 effect 20.4 58 0.0012 25.3 1.3 18 169-190 67-84 (103)
459 KOG3027 Mitochondrial outer me 20.4 2.3E+02 0.0049 25.2 5.0 75 68-160 25-101 (257)
460 COG4566 TtrR Response regulato 20.2 2.5E+02 0.0053 24.5 5.2 44 103-152 51-98 (202)
461 PLN02915 cellulose synthase A 20.2 56 0.0012 34.9 1.5 39 168-206 14-64 (1044)
462 KOG0706 Predicted GTPase-activ 20.2 67 0.0015 31.1 1.9 39 153-193 9-56 (454)
463 cd04476 RPA1_DBD_C RPA1_DBD_C: 20.1 74 0.0016 25.7 2.0 31 177-209 31-61 (166)
464 PRK11827 hypothetical protein; 20.1 1.1E+02 0.0023 21.6 2.5 27 180-207 8-34 (60)
No 1
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-55 Score=386.33 Aligned_cols=159 Identities=60% Similarity=1.135 Sum_probs=150.1
Q ss_pred ccccCCCCCCCCCCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCC---cccccEE
Q 027825 56 LLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGE---TVTVPRV 132 (218)
Q Consensus 56 ~~~~~~~~~pp~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~---~~tvPqV 132 (218)
.+.+|.+.+||+++.+||||||+|||||+||++|..||+||++++|.|+||||+||..|++||++++ |. ..++|+|
T Consensus 117 ~~~e~~~~~~Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~l-g~~~~~~~LPrV 195 (281)
T KOG2824|consen 117 LLLEFKEVCPPGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELL-GEDEKAVSLPRV 195 (281)
T ss_pred chhhhhhcCCCCCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHH-hcccccCccCeE
Confidence 4568999999999999999999999999999999999999999999999999999999999999999 54 7889999
Q ss_pred EECCEEEecchhhHhHHHhCcHHHHHhhhhhhcccCCcCCCCCCCcceeeCCCCCCCceeee---cCCceeccCCcCcCC
Q 027825 133 FIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVL---ANGDKQRCGVCNENG 209 (218)
Q Consensus 133 FI~G~~IGG~del~~l~e~G~L~~lL~~~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~---~~~~~~rC~~CnenG 209 (218)
||+|+||||+++|++|+|.|+|.+||++++. . +...|++|||+||+||+.||||+|++. .+..++||++|||||
T Consensus 196 FV~GryIGgaeeV~~LnE~GkL~~lL~~~p~-~--~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CNENG 272 (281)
T KOG2824|consen 196 FVKGRYIGGAEEVVRLNEEGKLGKLLKGIPC-E--GGGVCESCGGARFLPCSNCHGSCKVHEEEEDDGGVLRCLECNENG 272 (281)
T ss_pred EEccEEeccHHHhhhhhhcchHHHHHhcCCC-C--CCCcCCCcCCcceEecCCCCCceeeeeeccCCCcEEECcccCCCC
Confidence 9999999999999999999999999999993 2 578999999999999999999999998 445699999999999
Q ss_pred cccCCCCCC
Q 027825 210 LVHCPACSS 218 (218)
Q Consensus 210 l~~C~~C~~ 218 (218)
|||||+|+.
T Consensus 273 LvrCp~Cs~ 281 (281)
T KOG2824|consen 273 LVRCPVCSN 281 (281)
T ss_pred ceeCCccCC
Confidence 999999974
No 2
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=100.00 E-value=6.9e-53 Score=344.26 Aligned_cols=140 Identities=59% Similarity=1.101 Sum_probs=133.1
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCC---cccccEEEECCEEEecchhhHh
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGE---TVTVPRVFIKGRYVGGVDELTE 147 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~---~~tvPqVFI~G~~IGG~del~~ 147 (218)
+||||||||+|||+|||+|.+||+||++++|.|+|+||+||+++++||++++ |. +.++|||||+|+||||+|++++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~-g~~~~~~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELL-GAELKAVSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh-CCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 5999999999999999999999999999999999999999999999999998 53 5899999999999999999999
Q ss_pred HHHhCcHHHHHhhhhhhcccCCcCCCCCCCcceeeCCCCCCCceeeecC----CceeccCCcCcCCcccC
Q 027825 148 LNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLAN----GDKQRCGVCNENGLVHC 213 (218)
Q Consensus 148 l~e~G~L~~lL~~~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~----~~~~rC~~CnenGl~~C 213 (218)
|||+|+|.++|++++... +...|++|||.|||||++||||+|++.++ +.++||++|||||||||
T Consensus 80 L~e~G~L~~lL~~~~~~~--~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 80 LNESGELRKLLKGIRARA--GGGVCEGCGGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC 147 (147)
T ss_pred HHHcCCHHHHHhhccccc--CCCCCCCCCCcCeEECCCCCCcceEEeccCcccccEEECCCCCccccccC
Confidence 999999999999997765 67789999999999999999999999987 45999999999999999
No 3
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.92 E-value=5e-25 Score=167.11 Aligned_cols=88 Identities=18% Similarity=0.323 Sum_probs=84.0
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCC--CcccccEEEECCEEEecchhhHhHH
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGG--ETVTVPRVFIKGRYVGGVDELTELN 149 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g--~~~tvPqVFI~G~~IGG~del~~l~ 149 (218)
|+||+||++|+|++...|+.|+++|++++|.|+|+||++|++.+++|++++++ +..++|||||+++||||+|++.+|+
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~ 81 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999831 3699999999999999999999999
Q ss_pred HhCcHHHHHh
Q 027825 150 ESGKLGRMLR 159 (218)
Q Consensus 150 e~G~L~~lL~ 159 (218)
++|+|+++|+
T Consensus 82 e~g~L~~lLk 91 (92)
T cd03030 82 ENNTLEEFLK 91 (92)
T ss_pred hCCCHHHHhC
Confidence 9999999985
No 4
>PRK10824 glutaredoxin-4; Provisional
Probab=99.88 E-value=1.5e-22 Score=159.42 Aligned_cols=94 Identities=15% Similarity=0.261 Sum_probs=86.6
Q ss_pred CCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE 147 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~ 147 (218)
.+++||||+++. .-+.+||||.+++++|.++++.|.++||..+.+.+++|++++ | ++|+|||||+|++|||+|++.+
T Consensus 13 ~~~~Vvvf~Kg~-~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~s-g-~~TVPQIFI~G~~IGG~ddl~~ 89 (115)
T PRK10824 13 AENPILLYMKGS-PKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYA-N-WPTFPQLWVDGELVGGCDIVIE 89 (115)
T ss_pred hcCCEEEEECCC-CCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHh-C-CCCCCeEEECCEEEcChHHHHH
Confidence 578899999962 344579999999999999999999999999999999999998 7 9999999999999999999999
Q ss_pred HHHhCcHHHHHhhhhhh
Q 027825 148 LNESGKLGRMLRSARVE 164 (218)
Q Consensus 148 l~e~G~L~~lL~~~~~~ 164 (218)
|+++|+|.++|+.++..
T Consensus 90 l~~~G~L~~lL~~~~~~ 106 (115)
T PRK10824 90 MYQRGELQQLIKETAAK 106 (115)
T ss_pred HHHCCCHHHHHHHHHhh
Confidence 99999999999887764
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.88 E-value=2.7e-22 Score=152.75 Aligned_cols=88 Identities=23% Similarity=0.337 Sum_probs=81.1
Q ss_pred CCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE 147 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~ 147 (218)
.+++||||+++. .-+.+||+|.+++++|+++||+|+++||..+++.+++|++++ | ..++|||||+|++|||+|++++
T Consensus 10 ~~~~Vvvf~kg~-~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~t-g-~~tvP~vfi~g~~iGG~ddl~~ 86 (97)
T TIGR00365 10 KENPVVLYMKGT-PQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYS-N-WPTIPQLYVKGEFVGGCDIIME 86 (97)
T ss_pred ccCCEEEEEccC-CCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh-C-CCCCCEEEECCEEEeChHHHHH
Confidence 578999999864 334579999999999999999999999999999999999998 7 8999999999999999999999
Q ss_pred HHHhCcHHHHH
Q 027825 148 LNESGKLGRML 158 (218)
Q Consensus 148 l~e~G~L~~lL 158 (218)
|+++|+|.++|
T Consensus 87 l~~~g~L~~~l 97 (97)
T TIGR00365 87 MYQSGELQTLL 97 (97)
T ss_pred HHHCcChHHhC
Confidence 99999999876
No 6
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.88 E-value=3.8e-22 Score=152.50 Aligned_cols=88 Identities=28% Similarity=0.425 Sum_probs=79.7
Q ss_pred CCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHH---HHHHHHHHhCCCcccccEEEECCEEEecchh
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQ---FLNELKDLLGGETVTVPRVFIKGRYVGGVDE 144 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~---~r~eLk~~~~g~~~tvPqVFI~G~~IGG~de 144 (218)
.+++|+||+++ +||+|.+++++|++++|+|+++||+.+++ ++++|.+++ | ..++|||||+|++|||+|+
T Consensus 6 ~~~~Vvvysk~------~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~t-g-~~tvP~Vfi~g~~iGG~dd 77 (99)
T TIGR02189 6 SEKAVVIFSRS------SCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLG-C-SPAVPAVFVGGKLVGGLEN 77 (99)
T ss_pred ccCCEEEEECC------CCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhc-C-CCCcCeEEECCEEEcCHHH
Confidence 56889999999 59999999999999999999999988754 556777777 6 9999999999999999999
Q ss_pred hHhHHHhCcHHHHHhhhhh
Q 027825 145 LTELNESGKLGRMLRSARV 163 (218)
Q Consensus 145 l~~l~e~G~L~~lL~~~~~ 163 (218)
+++|+++|+|.++|+.+++
T Consensus 78 l~~l~~~G~L~~~l~~~~~ 96 (99)
T TIGR02189 78 VMALHISGSLVPMLKQAGA 96 (99)
T ss_pred HHHHHHcCCHHHHHHHhCc
Confidence 9999999999999987654
No 7
>PHA03050 glutaredoxin; Provisional
Probab=99.87 E-value=9.7e-22 Score=152.85 Aligned_cols=90 Identities=22% Similarity=0.369 Sum_probs=83.1
Q ss_pred CCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCC---cEEEEECCC---CHHHHHHHHHHhCCCcccccEEEECCEEEec
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRV---VTDERDVSL---HGQFLNELKDLLGGETVTVPRVFIKGRYVGG 141 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV---~~~erDVs~---d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG 141 (218)
..++|+||+++ +||||.+++++|++++| .|+++||+. +.+.+++|.+++ | ..++|+|||+|++|||
T Consensus 11 ~~~~V~vys~~------~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~t-G-~~tVP~IfI~g~~iGG 82 (108)
T PHA03050 11 ANNKVTIFVKF------TCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQIT-G-GRTVPRIFFGKTSIGG 82 (108)
T ss_pred ccCCEEEEECC------CChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHc-C-CCCcCEEEECCEEEeC
Confidence 45789999999 59999999999999999 799999986 678999999998 7 8999999999999999
Q ss_pred chhhHhHHHhCcHHHHHhhhhhhc
Q 027825 142 VDELTELNESGKLGRMLRSARVEM 165 (218)
Q Consensus 142 ~del~~l~e~G~L~~lL~~~~~~~ 165 (218)
+|++++|+++|+|.++|+.+++.+
T Consensus 83 ~ddl~~l~~~g~L~~~l~~~~~~~ 106 (108)
T PHA03050 83 YSDLLEIDNMDALGDILSSIGVLR 106 (108)
T ss_pred hHHHHHHHHcCCHHHHHHHccccc
Confidence 999999999999999999887654
No 8
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.85 E-value=8.3e-21 Score=142.17 Aligned_cols=85 Identities=22% Similarity=0.310 Sum_probs=77.6
Q ss_pred CCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE 147 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~ 147 (218)
.+++||||+++. .-..+||+|.+++++|+++||.|+++||..|.+++++|++++ | ..++|+|||+|++|||++++++
T Consensus 6 ~~~~vvvf~k~~-~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~-g-~~tvP~vfi~g~~iGG~~~l~~ 82 (90)
T cd03028 6 KENPVVLFMKGT-PEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYS-N-WPTFPQLYVNGELVGGCDIVKE 82 (90)
T ss_pred ccCCEEEEEcCC-CCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHh-C-CCCCCEEEECCEEEeCHHHHHH
Confidence 467899998852 334469999999999999999999999999999999999998 7 8999999999999999999999
Q ss_pred HHHhCcHH
Q 027825 148 LNESGKLG 155 (218)
Q Consensus 148 l~e~G~L~ 155 (218)
||++|+|+
T Consensus 83 l~~~g~L~ 90 (90)
T cd03028 83 MHESGELQ 90 (90)
T ss_pred HHHcCCcC
Confidence 99999984
No 9
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.84 E-value=1.4e-20 Score=136.18 Aligned_cols=79 Identities=33% Similarity=0.497 Sum_probs=75.9
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHHh
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNES 151 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e~ 151 (218)
|+||+++ +||+|.+++++|++++|.|+++||+++++.++++.+++ | ..++|+|||+|++|||++++.+|+++
T Consensus 1 v~ly~~~------~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~-g-~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKP------YCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRS-G-RRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecC------CChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHh-C-CCCcCEEEECCEEEcChHHHHHHHHc
Confidence 6899999 69999999999999999999999999999999999998 7 99999999999999999999999999
Q ss_pred CcHHHHH
Q 027825 152 GKLGRML 158 (218)
Q Consensus 152 G~L~~lL 158 (218)
|+|+++|
T Consensus 73 g~l~~~l 79 (79)
T TIGR02181 73 GKLDPLL 79 (79)
T ss_pred CChhhhC
Confidence 9999876
No 10
>PRK10638 glutaredoxin 3; Provisional
Probab=99.83 E-value=5.2e-20 Score=135.20 Aligned_cols=81 Identities=30% Similarity=0.492 Sum_probs=77.2
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHH
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNE 150 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e 150 (218)
+|+||+++ +|++|.+++.+|+.+||.|+++||+.+.+.+++|.++. | ..++|+||++|++|||++++++|++
T Consensus 3 ~v~ly~~~------~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~-g-~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKA------TCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRS-G-RTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECC------CChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHh-C-CCCcCEEEECCEEEeCHHHHHHHHH
Confidence 69999999 59999999999999999999999999998999999988 6 8999999999999999999999999
Q ss_pred hCcHHHHHh
Q 027825 151 SGKLGRMLR 159 (218)
Q Consensus 151 ~G~L~~lL~ 159 (218)
+|+|.++|+
T Consensus 75 ~g~l~~~~~ 83 (83)
T PRK10638 75 RGGLDPLLK 83 (83)
T ss_pred cCCHHHHhC
Confidence 999999884
No 11
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.79 E-value=7e-19 Score=125.30 Aligned_cols=75 Identities=31% Similarity=0.467 Sum_probs=69.7
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHH
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNE 150 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e 150 (218)
+|+||+++ .|++|.+++.+|++++|.|+++||+.+.+.+++|.++. |...++|+|||+|++|||++++++|++
T Consensus 1 ~i~ly~~~------~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~-~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKP------NCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRS-GGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCC------CChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh-CCCCccCEEEECCEEEeChHHHHHHHh
Confidence 58999999 59999999999999999999999999999999999988 623399999999999999999999999
Q ss_pred hC
Q 027825 151 SG 152 (218)
Q Consensus 151 ~G 152 (218)
+|
T Consensus 74 ~g 75 (75)
T cd03418 74 KG 75 (75)
T ss_pred Cc
Confidence 87
No 12
>PTZ00062 glutaredoxin; Provisional
Probab=99.79 E-value=5.8e-19 Score=151.36 Aligned_cols=91 Identities=19% Similarity=0.263 Sum_probs=82.7
Q ss_pred CCCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhH
Q 027825 67 GGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELT 146 (218)
Q Consensus 67 ~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~ 146 (218)
..+++|+||+++. .....|++|.+++++|++++|.|.++||..|.+.+++|++++ | ++++|||||+|++|||+|+++
T Consensus 110 i~~~~Vvvf~Kg~-~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~s-g-~~TvPqVfI~G~~IGG~d~l~ 186 (204)
T PTZ00062 110 IRNHKILLFMKGS-KTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYS-N-WPTYPQLYVNGELIGGHDIIK 186 (204)
T ss_pred HhcCCEEEEEccC-CCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHh-C-CCCCCeEEECCEEEcChHHHH
Confidence 3678999999962 223469999999999999999999999999999999999998 7 999999999999999999999
Q ss_pred hHHHhCcHHHHHhh
Q 027825 147 ELNESGKLGRMLRS 160 (218)
Q Consensus 147 ~l~e~G~L~~lL~~ 160 (218)
+|+++|+|+++|..
T Consensus 187 ~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 187 ELYESNSLRKVIPD 200 (204)
T ss_pred HHHHcCChhhhhhh
Confidence 99999999999853
No 13
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.79 E-value=6e-19 Score=126.31 Aligned_cols=73 Identities=29% Similarity=0.505 Sum_probs=68.9
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN 149 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~ 149 (218)
++|+||+++ .|++|.+|+++|+++||+|+++||..+.+.+++|++++ | ..++|+|||||++|||++++++|+
T Consensus 1 ~~v~ly~~~------~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~-g-~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 1 GRVTIYSRL------GCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERT-G-SSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred CEEEEEecC------CChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHh-C-CCCcCEEEECCEEEeCHHHHHhhc
Confidence 479999999 59999999999999999999999999999999999998 6 789999999999999999999886
Q ss_pred H
Q 027825 150 E 150 (218)
Q Consensus 150 e 150 (218)
|
T Consensus 73 ~ 73 (73)
T cd03027 73 E 73 (73)
T ss_pred C
Confidence 4
No 14
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.2e-18 Score=132.65 Aligned_cols=89 Identities=30% Similarity=0.512 Sum_probs=77.8
Q ss_pred CCCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCC---CHHHHHHHHHHhCCCcccccEEEECCEEEecch
Q 027825 67 GGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSL---HGQFLNELKDLLGGETVTVPRVFIKGRYVGGVD 143 (218)
Q Consensus 67 ~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~---d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~d 143 (218)
..+++||||+++ +|++|.+++.+|...++.+..++++. ..+++++|.+++ | .+++|+|||+|++|||.+
T Consensus 11 i~~~~VVifSKs------~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~t-g-~~tvP~vFI~Gk~iGG~~ 82 (104)
T KOG1752|consen 11 ISENPVVIFSKS------SCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLT-G-QRTVPNVFIGGKFIGGAS 82 (104)
T ss_pred hhcCCEEEEECC------cCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhc-C-CCCCCEEEECCEEEcCHH
Confidence 367889999999 59999999999999999865555543 357888888887 6 899999999999999999
Q ss_pred hhHhHHHhCcHHHHHhhhhh
Q 027825 144 ELTELNESGKLGRMLRSARV 163 (218)
Q Consensus 144 el~~l~e~G~L~~lL~~~~~ 163 (218)
++++||.+|+|.++|+.+.+
T Consensus 83 dl~~lh~~G~L~~~l~~~~~ 102 (104)
T KOG1752|consen 83 DLMALHKSGELVPLLKEAGA 102 (104)
T ss_pred HHHHHHHcCCHHHHHHHhhc
Confidence 99999999999999987764
No 15
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.3e-18 Score=131.96 Aligned_cols=92 Identities=22% Similarity=0.291 Sum_probs=85.9
Q ss_pred CCCCcEEEEEeecCCCCCCChHHHHHHHHHhhCC-CcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhh
Q 027825 67 GGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNR-VVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDEL 145 (218)
Q Consensus 67 ~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~g-V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del 145 (218)
..+++||||.+.. .-.+.|.|+.++.++|...| ++|..+||-.|+++|+.|++.+ + |+|+||+||+|++|||.|-+
T Consensus 12 i~~n~VvLFMKGt-p~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s-~-WPT~PQLyi~GEfvGG~DIv 88 (105)
T COG0278 12 IKENPVVLFMKGT-PEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYS-N-WPTFPQLYVNGEFVGGCDIV 88 (105)
T ss_pred hhcCceEEEecCC-CCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhc-C-CCCCceeeECCEEeccHHHH
Confidence 3578899999994 67778999999999999999 8999999999999999999998 5 99999999999999999999
Q ss_pred HhHHHhCcHHHHHhhh
Q 027825 146 TELNESGKLGRMLRSA 161 (218)
Q Consensus 146 ~~l~e~G~L~~lL~~~ 161 (218)
.+|+++|+|+++|+++
T Consensus 89 ~Em~q~GELq~~l~~~ 104 (105)
T COG0278 89 REMYQSGELQTLLKEA 104 (105)
T ss_pred HHHHHcchHHHHHHhc
Confidence 9999999999999764
No 16
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.73 E-value=1.5e-17 Score=120.01 Aligned_cols=79 Identities=28% Similarity=0.582 Sum_probs=71.0
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCc--EEEEECCCC---HHHHHHHHHHhCCCcccccEEEECCEEEecchhhH
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVV--TDERDVSLH---GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELT 146 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~--~~erDVs~d---~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~ 146 (218)
|++|+++| ||+|.+++.+|+++++. |..+||+.+ .+.+++|.++. | ..++|+|||+|++|||+++++
T Consensus 1 V~~f~~~~------Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~-g-~~~vP~v~i~g~~igg~~~~~ 72 (84)
T TIGR02180 1 VVVFSKSY------CPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEIT-G-QRTVPNIFINGKFIGGCSDLL 72 (84)
T ss_pred CEEEECCC------ChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHh-C-CCCCCeEEECCEEEcCHHHHH
Confidence 68999995 99999999999999998 888887653 56677888887 6 889999999999999999999
Q ss_pred hHHHhCcHHHHH
Q 027825 147 ELNESGKLGRML 158 (218)
Q Consensus 147 ~l~e~G~L~~lL 158 (218)
+|+++|+|+++|
T Consensus 73 ~~~~~g~l~~~~ 84 (84)
T TIGR02180 73 ALYKSGKLAELL 84 (84)
T ss_pred HHHHcCChhhhC
Confidence 999999999886
No 17
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.7e-17 Score=122.32 Aligned_cols=76 Identities=36% Similarity=0.536 Sum_probs=67.6
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH--HHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG--QFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL 148 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~--~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l 148 (218)
.|+||+++ +||||.+++++|+++|+.|+++|+.++. +.++.+++.. | .+++|||||||++|||.+++.++
T Consensus 2 ~v~iyt~~------~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~-g-~~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKP------GCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGK-G-QRTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECC------CCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhC-C-CCCcCEEEECCEEEeCcccHHHH
Confidence 58999999 6999999999999999999999999887 5555555554 5 99999999999999999999999
Q ss_pred HHhCcH
Q 027825 149 NESGKL 154 (218)
Q Consensus 149 ~e~G~L 154 (218)
+..|.|
T Consensus 74 ~~~~~l 79 (80)
T COG0695 74 EAKGKL 79 (80)
T ss_pred HhhccC
Confidence 888775
No 18
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.72 E-value=2.6e-17 Score=118.63 Aligned_cols=79 Identities=34% Similarity=0.617 Sum_probs=71.2
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC---HHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH---GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE 147 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d---~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~ 147 (218)
+|++|+++ .||+|..++.+|+++++.|.++|++.+ .+.++++++++ | ..++|+||++|++|||++++.+
T Consensus 1 ~v~~y~~~------~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-g-~~~~P~v~~~g~~igg~~~~~~ 72 (82)
T cd03419 1 PVVVFSKS------YCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELT-G-QRTVPNVFIGGKFIGGCDDLMA 72 (82)
T ss_pred CEEEEEcC------CCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHh-C-CCCCCeEEECCEEEcCHHHHHH
Confidence 58999999 599999999999999999988887654 55678899888 6 8999999999999999999999
Q ss_pred HHHhCcHHHH
Q 027825 148 LNESGKLGRM 157 (218)
Q Consensus 148 l~e~G~L~~l 157 (218)
|.++|+|+++
T Consensus 73 ~~~~g~l~~~ 82 (82)
T cd03419 73 LHKSGKLVKL 82 (82)
T ss_pred HHHcCCccCC
Confidence 9999999753
No 19
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.71 E-value=7e-17 Score=115.12 Aligned_cols=70 Identities=27% Similarity=0.500 Sum_probs=63.3
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN 149 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~ 149 (218)
+|+||+++ +||+|.+++++|++++|+|+++||+.+.. .++++.+. | ..++|+|||||++|||++++.++.
T Consensus 2 ~v~lys~~------~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~-g-~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKP------GCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVT-G-AMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECC------CCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHh-C-CCCcCeEEECCEEEeCHHHHHHHh
Confidence 69999999 69999999999999999999999998874 46777776 6 899999999999999999988763
No 20
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.69 E-value=1.8e-16 Score=109.53 Aligned_cols=72 Identities=38% Similarity=0.670 Sum_probs=67.8
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHH
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNE 150 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e 150 (218)
+|+||+++ .|++|.+++.+|+++++.|.++|+..+.+.+++|++++ | ..++|+||++|++|||++++++|++
T Consensus 1 ~v~ly~~~------~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~-~-~~~~P~~~~~~~~igg~~~~~~~~~ 72 (72)
T cd02066 1 KVVVFSKS------TCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELS-G-WPTVPQIFINGEFIGGYDDLKALHE 72 (72)
T ss_pred CEEEEECC------CCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHh-C-CCCcCEEEECCEEEecHHHHHHhhC
Confidence 58999999 59999999999999999999999999999999999998 6 8999999999999999999998874
No 21
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.68 E-value=1.2e-16 Score=122.79 Aligned_cols=89 Identities=22% Similarity=0.434 Sum_probs=74.0
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhC-------CCcccccEEEECCEEEecch
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLG-------GETVTVPRVFIKGRYVGGVD 143 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~-------g~~~tvPqVFI~G~~IGG~d 143 (218)
.|.||+||.+|.++.-..++++..||++++|+|+++||++|++.|++|++..+ ++...+||||++++|+|++|
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 38899999999999999999999999999999999999999999999999882 22555689999999999999
Q ss_pred hhHhHHHhCcHHHHHh
Q 027825 144 ELTELNESGKLGRMLR 159 (218)
Q Consensus 144 el~~l~e~G~L~~lL~ 159 (218)
++.+++|+++|.++|+
T Consensus 82 ~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 82 DFEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHHCTT-HHHHHT
T ss_pred HHHHHHhhCHHHHHhC
Confidence 9999999999999985
No 22
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.68 E-value=2.7e-16 Score=114.65 Aligned_cols=72 Identities=28% Similarity=0.502 Sum_probs=64.5
Q ss_pred CCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE 147 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~ 147 (218)
.+.+|+||+++ .|++|.+++++|+++||.|+++||+.+.+. +++++++ | ..++|+|||+|++|||+++|++
T Consensus 6 ~~~~V~ly~~~------~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~-g-~~~vP~i~i~g~~igG~~~l~~ 76 (79)
T TIGR02190 6 KPESVVVFTKP------GCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVT-G-ATTVPQVFIGGKLIGGSDELEA 76 (79)
T ss_pred CCCCEEEEECC------CCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHH-C-CCCcCeEEECCEEEcCHHHHHH
Confidence 46789999999 599999999999999999999999887654 5677777 6 8999999999999999999876
Q ss_pred H
Q 027825 148 L 148 (218)
Q Consensus 148 l 148 (218)
+
T Consensus 77 ~ 77 (79)
T TIGR02190 77 Y 77 (79)
T ss_pred H
Confidence 5
No 23
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.67 E-value=4e-16 Score=115.85 Aligned_cols=74 Identities=24% Similarity=0.401 Sum_probs=65.1
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCC-cccccEEEECCEEEecchhh
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGE-TVTVPRVFIKGRYVGGVDEL 145 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~-~~tvPqVFI~G~~IGG~del 145 (218)
|+||+++ +||+|.+++++|+++ ++.|+++||..+...+++|.++. |. ..++|+|||||++|||++++
T Consensus 2 V~vys~~------~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~-g~~~~tVP~ifi~g~~igG~~dl 74 (86)
T TIGR02183 2 VVIFGRP------GCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTV-GKPVETVPQIFVDEKHVGGCTDF 74 (86)
T ss_pred EEEEeCC------CCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHh-CCCCCCcCeEEECCEEecCHHHH
Confidence 7999999 599999999999998 46799999987776678898888 52 27999999999999999999
Q ss_pred HhHHHhC
Q 027825 146 TELNESG 152 (218)
Q Consensus 146 ~~l~e~G 152 (218)
.++++++
T Consensus 75 ~~~~~~~ 81 (86)
T TIGR02183 75 EQLVKEN 81 (86)
T ss_pred HHHHHhc
Confidence 9998764
No 24
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.66 E-value=5.7e-16 Score=114.01 Aligned_cols=74 Identities=22% Similarity=0.370 Sum_probs=66.6
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhh-----CCCcEEEEECCCCHHHHHHHHHHhCCC-cccccEEEECCEEEecchh
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEV-----NRVVTDERDVSLHGQFLNELKDLLGGE-TVTVPRVFIKGRYVGGVDE 144 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~-----~gV~~~erDVs~d~~~r~eLk~~~~g~-~~tvPqVFI~G~~IGG~de 144 (218)
+|+||+++ +|++|.+|+++|++ .+|.|+++||..+...+++|.++. |. ..++|+|||||++|||+++
T Consensus 2 ~v~iy~~~------~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~-~~~~~~vP~ifi~g~~igg~~~ 74 (85)
T PRK11200 2 FVVIFGRP------GCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTV-GKPVETVPQIFVDQKHIGGCTD 74 (85)
T ss_pred EEEEEeCC------CChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHH-CCCCCcCCEEEECCEEEcCHHH
Confidence 58999999 59999999999999 899999999998877788899888 52 3799999999999999999
Q ss_pred hHhHHHh
Q 027825 145 LTELNES 151 (218)
Q Consensus 145 l~~l~e~ 151 (218)
+.++++.
T Consensus 75 ~~~~~~~ 81 (85)
T PRK11200 75 FEAYVKE 81 (85)
T ss_pred HHHHHHH
Confidence 9988754
No 25
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5.9e-16 Score=133.67 Aligned_cols=91 Identities=21% Similarity=0.339 Sum_probs=85.5
Q ss_pred CCCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhH
Q 027825 67 GGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELT 146 (218)
Q Consensus 67 ~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~ 146 (218)
...++|+||.++. .....|.+.+++..+|++++|+|...||..|++.|+-||+.+ . |+|+|||||+|++|||.|-+.
T Consensus 136 v~a~~v~lFmKG~-p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fS-d-WPTfPQlyI~GEFiGGlDIl~ 212 (227)
T KOG0911|consen 136 VKAKPVMLFMKGT-PEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFS-D-WPTFPQLYVKGEFIGGLDILK 212 (227)
T ss_pred cccCeEEEEecCC-CCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhc-C-CCCccceeECCEeccCcHHHH
Confidence 4678899999995 677789999999999999999999999999999999999998 5 999999999999999999999
Q ss_pred hHHHhCcHHHHHhh
Q 027825 147 ELNESGKLGRMLRS 160 (218)
Q Consensus 147 ~l~e~G~L~~lL~~ 160 (218)
+|+++|+|...|++
T Consensus 213 ~m~~~geL~~~l~~ 226 (227)
T KOG0911|consen 213 EMHEKGELVYTLKE 226 (227)
T ss_pred HHhhcccHHHHhhc
Confidence 99999999999875
No 26
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.62 E-value=2.3e-15 Score=103.81 Aligned_cols=60 Identities=33% Similarity=0.605 Sum_probs=57.6
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEE
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYV 139 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~I 139 (218)
|+||+++ +|++|.+++++|+++|++|+++||+.+++.+++|++++ | ..++|+|||||++|
T Consensus 1 V~vy~~~------~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~-g-~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKP------GCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELS-G-VRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEEST------TSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHH-S-SSSSSEEEETTEEE
T ss_pred cEEEEcC------CCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHc-C-CCccCEEEECCEEC
Confidence 7899998 69999999999999999999999999999999999998 6 99999999999987
No 27
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.54 E-value=2.9e-14 Score=133.38 Aligned_cols=86 Identities=20% Similarity=0.294 Sum_probs=72.9
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHH--------hCCCcccccEEEECCEEEec
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDL--------LGGETVTVPRVFIKGRYVGG 141 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~--------~~g~~~tvPqVFI~G~~IGG 141 (218)
.+|+||+++ +||+|.+++++|+++||+|+++||+.++...+.+.+. + | ..++|||||+|++|||
T Consensus 2 ~~V~vys~~------~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~-g-~~tvP~ifi~~~~igG 73 (410)
T PRK12759 2 VEVRIYTKT------NCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEE-H-IRTVPQIFVGDVHIGG 73 (410)
T ss_pred CcEEEEeCC------CCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccC-C-CCccCeEEECCEEEeC
Confidence 369999999 5999999999999999999999999887544422222 3 4 7899999999999999
Q ss_pred chhhHhHHHhCcHHHHHhhhhhhc
Q 027825 142 VDELTELNESGKLGRMLRSARVEM 165 (218)
Q Consensus 142 ~del~~l~e~G~L~~lL~~~~~~~ 165 (218)
++++++ .+|+|.++|++.+...
T Consensus 74 f~~l~~--~~g~l~~~~~~~~~~~ 95 (410)
T PRK12759 74 YDNLMA--RAGEVIARVKGSSLTT 95 (410)
T ss_pred chHHHH--HhCCHHHHhcCCcccc
Confidence 999977 8999999998866543
No 28
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.46 E-value=5.5e-13 Score=98.44 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=60.3
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchh
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDE 144 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~de 144 (218)
+|+||+++ +|++|.++|.+|+++||.|+++||+.+++..++++. . | ..++|+|++++..|+|++.
T Consensus 2 ~v~lYt~~------~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~-g-~~~vPvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 2 RITIYTRN------DCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-Q-G-FRQLPVVIAGDLSWSGFRP 66 (81)
T ss_pred EEEEEeCC------CCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-c-C-CCCcCEEEECCEEEecCCH
Confidence 69999999 699999999999999999999999999999998876 4 5 8899999999999999974
No 29
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.44 E-value=4e-13 Score=95.98 Aligned_cols=64 Identities=16% Similarity=0.356 Sum_probs=58.1
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCE-EEecchh
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGR-YVGGVDE 144 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~-~IGG~de 144 (218)
|+||+++ +|++|.+++++|+++||.|+++||..+++.++++++ + | ..++|+||++|. +|||++.
T Consensus 1 v~ly~~~------~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~-~-g-~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKN------NCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKA-Q-G-FRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-c-C-CcccCEEEECCCcEEeccCH
Confidence 6899999 699999999999999999999999999999999876 4 6 789999999775 9999975
No 30
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.20 E-value=1.9e-10 Score=79.68 Aligned_cols=66 Identities=24% Similarity=0.400 Sum_probs=60.3
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchh
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDE 144 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~de 144 (218)
+|+||++++ |++|.+++.+|+..++.|.++|++.+.+..+++.+.. | ..++|.++++|+.++|++.
T Consensus 1 ~i~lf~~~~------C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~-~-~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTPW------CPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVL-G-QRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCCC------ChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHh-C-CCcccEEEECCEEEeeCCH
Confidence 488999995 9999999999999999999999999988888888888 6 8899999999999999854
No 31
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.13 E-value=4.9e-10 Score=77.53 Aligned_cols=66 Identities=27% Similarity=0.392 Sum_probs=60.6
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchh
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDE 144 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~de 144 (218)
+|++|+++ +|++|.+++.+|+..++.|..+|++.+....++++++. + ..++|+|+++|+.|+|++.
T Consensus 1 ~v~l~~~~------~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~-~-~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKP------DCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLN-G-YRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCC------CChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHc-C-CcccCEEEECCEEEecCCH
Confidence 48999999 59999999999999999999999999988889998886 5 7899999999999999975
No 32
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.91 E-value=1.7e-08 Score=71.19 Aligned_cols=66 Identities=15% Similarity=0.254 Sum_probs=56.4
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE-CCEEEecch
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI-KGRYVGGVD 143 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI-~G~~IGG~d 143 (218)
+|+||++++ |++|.+++.+|+.+++.|+.+|+..+....++++++. .+..++|+|++ +|+.+....
T Consensus 1 ~v~ly~~~~------C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~-~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTW------CGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVN-NGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCC------ChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHh-CCCceeCEEEECCCeEecCCC
Confidence 489999995 9999999999999999999999999988888888875 23889999976 567776554
No 33
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=6.9e-09 Score=79.69 Aligned_cols=93 Identities=18% Similarity=0.245 Sum_probs=82.2
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhC-------CCcccccEEEECCEEEecch
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLG-------GETVTVPRVFIKGRYVGGVD 143 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~-------g~~~tvPqVFI~G~~IGG~d 143 (218)
.|.+|++|.+|...+-..-..+..+|+...|.|+++||.+..+.+.++....+ | .+..||||-+++|.|+||
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~G-nplPPqifn~d~Y~Gdye 81 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNG-NPLPPQIFNGDQYCGDYE 81 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCC-CCCCcccccCccccccHH
Confidence 47899999999888888888999999999999999999998888877766543 4 678899999999999999
Q ss_pred hhHhHHHhCcHHHHHhhhhhh
Q 027825 144 ELTELNESGKLGRMLRSARVE 164 (218)
Q Consensus 144 el~~l~e~G~L~~lL~~~~~~ 164 (218)
.+.+..|++-|.+.|.-++..
T Consensus 82 ~F~ea~E~ntl~eFL~lap~~ 102 (108)
T KOG4023|consen 82 LFFEAVEQNTLQEFLGLAPPP 102 (108)
T ss_pred HHHHHHHHHHHHHHHccCCCc
Confidence 999999999999999877654
No 34
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.72 E-value=4.1e-08 Score=68.26 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=49.1
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEec
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGG 141 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG 141 (218)
+|++|++++ |++|.+++.+|+.. ++.|..+|++.+.+ +.+.. | ..++|+|+|+|++++-
T Consensus 2 ~v~~f~~~~------C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~-~-i~~vPti~i~~~~~~~ 65 (67)
T cd02973 2 NIEVFVSPT------CPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEY-G-VMSVPAIVINGKVEFV 65 (67)
T ss_pred EEEEEECCC------CCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHc-C-CcccCEEEECCEEEEe
Confidence 589999994 99999999999875 68999999987754 55555 5 7899999999998763
No 35
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.63 E-value=2.7e-07 Score=66.41 Aligned_cols=70 Identities=13% Similarity=0.070 Sum_probs=57.3
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEEC--CEEEecchhhHhHH
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIK--GRYVGGVDELTELN 149 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~--G~~IGG~del~~l~ 149 (218)
++||+.+ .|++|.+|+.+|+.+||+|+++|+..+....+++.+.. + ..++|.+..+ |..+.+...|.+..
T Consensus 2 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~-p-~~~vP~l~~~~~~~~l~es~~I~~yL 73 (77)
T cd03041 2 LELYEFE------GSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKG-G-KVQVPYLVDPNTGVQMFESADIVKYL 73 (77)
T ss_pred ceEecCC------CCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhC-C-CCcccEEEeCCCCeEEEcHHHHHHHH
Confidence 6799998 59999999999999999999999987766678888775 4 7899999763 56677777665543
No 36
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.54 E-value=7.5e-07 Score=63.48 Aligned_cols=67 Identities=16% Similarity=0.236 Sum_probs=53.6
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEEC----CEEEecchhhH
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIK----GRYVGGVDELT 146 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~----G~~IGG~del~ 146 (218)
+|.||+.. .|++|.+++.+|+.+||.|++++++. ..+.+++ .. + ..++|+++++ |..|.....+.
T Consensus 1 ~i~Ly~~~------~~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~~-~~-~-~~~vP~l~~~~~~~~~~l~eS~~I~ 69 (77)
T cd03040 1 KITLYQYK------TCPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEIK-WS-S-YKKVPILRVESGGDGQQLVDSSVII 69 (77)
T ss_pred CEEEEEcC------CCHHHHHHHHHHHHCCCceEEEECCc--hhHHHHH-Hh-C-CCccCEEEECCCCCccEEEcHHHHH
Confidence 58899998 59999999999999999999999854 3345553 34 4 7899999987 67777777766
Q ss_pred hH
Q 027825 147 EL 148 (218)
Q Consensus 147 ~l 148 (218)
+.
T Consensus 70 ~y 71 (77)
T cd03040 70 ST 71 (77)
T ss_pred HH
Confidence 54
No 37
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.44 E-value=1.1e-06 Score=61.70 Aligned_cols=68 Identities=10% Similarity=0.211 Sum_probs=54.0
Q ss_pred EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEEC-CEEEecchhhHhHHH
Q 027825 73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIK-GRYVGGVDELTELNE 150 (218)
Q Consensus 73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~-G~~IGG~del~~l~e 150 (218)
.||+.. .|++|.++|.+|..+|++|+++++..+... .. .+.. + ..++|.|+++ |..+++...+.+..+
T Consensus 2 ~Ly~~~------~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-~~-~~~~-~-~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYE------HCPFCVKARMIAGLKNIPVEQIILQNDDEA-TP-IRMI-G-AKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEecC------CCcHhHHHHHHHHHcCCCeEEEECCCCchH-HH-HHhc-C-CCccCEEEeCCCeEeehHHHHHHHHh
Confidence 578888 599999999999999999999998765322 22 3444 4 6789999997 889999988876543
No 38
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.42 E-value=6e-07 Score=60.31 Aligned_cols=68 Identities=19% Similarity=0.062 Sum_probs=55.3
Q ss_pred EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825 73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL 148 (218)
Q Consensus 73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l 148 (218)
.||+.. .|++|.+++.+|+.++|+|+.++++.+.....++++.. + ..++|.|+++|..+++...+.+.
T Consensus 2 ~ly~~~------~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFP------GSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALN-P-LGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCC------CCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcC-C-CCCCCEEEECCEEEEcHHHHHHH
Confidence 578888 59999999999999999999999876543333567765 4 88999999999999988876544
No 39
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.41 E-value=1.5e-06 Score=64.30 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=59.6
Q ss_pred CCCCCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEEC-CEEEecch
Q 027825 65 PPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIK-GRYVGGVD 143 (218)
Q Consensus 65 pp~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~-G~~IGG~d 143 (218)
+|-..+.+.||+.. .|++|.+++.+|+.+|++|+.+++.... ..+++.+.. . ..++|.+.++ |..+....
T Consensus 12 ~~~~~~~~~Ly~~~------~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~n-p-~~~vPvL~~~~g~~l~eS~ 82 (89)
T cd03055 12 PPPVPGIIRLYSMR------FCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKN-P-QGKVPALEIDEGKVVYESL 82 (89)
T ss_pred CCCCCCcEEEEeCC------CCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhC-C-CCCcCEEEECCCCEEECHH
Confidence 34566789999998 6999999999999999999999987543 235566665 4 7789999998 78777777
Q ss_pred hhHhH
Q 027825 144 ELTEL 148 (218)
Q Consensus 144 el~~l 148 (218)
.|.+.
T Consensus 83 aI~~y 87 (89)
T cd03055 83 IICEY 87 (89)
T ss_pred HHHHh
Confidence 66554
No 40
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.22 E-value=5.6e-06 Score=57.91 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=53.2
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL 148 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l 148 (218)
++||+.. +|++|.+++.+|+.+|++|++++++.. ....++++.. . ..++|.+..+|..+.....+.+.
T Consensus 1 ~~ly~~~------~~~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~-p-~~~vP~l~~~~~~l~es~aI~~y 68 (73)
T cd03059 1 MTLYSGP------DDVYSHRVRIVLAEKGVSVEIIDVDPD-NPPEDLAELN-P-YGTVPTLVDRDLVLYESRIIMEY 68 (73)
T ss_pred CEEEECC------CChhHHHHHHHHHHcCCccEEEEcCCC-CCCHHHHhhC-C-CCCCCEEEECCEEEEcHHHHHHH
Confidence 4689888 699999999999999999999988754 2235676765 3 77999998888777666666544
No 41
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.17 E-value=2.6e-06 Score=66.09 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=41.2
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL 122 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~ 122 (218)
|.||+++ .|++|++++++|+++|+.|+++|+..++..+++|.+++
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~ 45 (111)
T cd03036 1 LKFYEYP------KCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWL 45 (111)
T ss_pred CEEEECC------CCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHH
Confidence 5799999 69999999999999999999999998888888888776
No 42
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.07 E-value=4.8e-06 Score=63.46 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=40.7
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL 122 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~ 122 (218)
|+||+++ +|++|++++++|+++||.|+++||..++...++|++++
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~ 45 (105)
T cd02977 1 ITIYGNP------NCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELL 45 (105)
T ss_pred CEEEECC------CCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHH
Confidence 5799999 69999999999999999999999988777778888876
No 43
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.04 E-value=1.2e-05 Score=64.38 Aligned_cols=45 Identities=20% Similarity=0.454 Sum_probs=40.6
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL 122 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~ 122 (218)
|+||+++ +|++|++++++|+++||.|+++|+..++..+++|++++
T Consensus 2 i~iY~~~------~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l 46 (131)
T PRK01655 2 VTLFTSP------SCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQIL 46 (131)
T ss_pred EEEEeCC------CChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHH
Confidence 7899999 69999999999999999999999998887777777664
No 44
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.03 E-value=1.9e-05 Score=55.63 Aligned_cols=66 Identities=17% Similarity=0.238 Sum_probs=52.1
Q ss_pred EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEEC-CEEEecchhhHh
Q 027825 73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIK-GRYVGGVDELTE 147 (218)
Q Consensus 73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~-G~~IGG~del~~ 147 (218)
+||+.. .|++|.+++.+|+.+|++|+.++++... ..++++++. . ..++|.+..+ |..|.....+.+
T Consensus 2 ~ly~~~------~~p~~~rv~~~L~~~gl~~e~~~v~~~~-~~~~~~~~n-p-~~~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 2 ILYSFR------RCPYAMRARMALLLAGITVELREVELKN-KPAEMLAAS-P-KGTVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEEecC------CCcHHHHHHHHHHHcCCCcEEEEeCCCC-CCHHHHHHC-C-CCCCCEEEECCCcEEecHHHHHH
Confidence 689888 4999999999999999999999887642 235677765 4 7899999986 877766655543
No 45
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.00 E-value=1.5e-05 Score=55.41 Aligned_cols=68 Identities=19% Similarity=0.147 Sum_probs=50.9
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC--HHHHHHHHHHhCCCcccccEEEE-CCEEEecchhhHh
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFI-KGRYVGGVDELTE 147 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d--~~~r~eLk~~~~g~~~tvPqVFI-~G~~IGG~del~~ 147 (218)
+.||+.. .|++|.+++.+|..++++|+.++++.. .....++.+.. . ..++|.+.+ +|..+.....+.+
T Consensus 1 ~~Ly~~~------~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~-p-~~~vP~l~~~~~~~l~es~aI~~ 71 (74)
T cd03051 1 MKLYDSP------TAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKN-P-AGTVPVLELDDGTVITESVAICR 71 (74)
T ss_pred CEEEeCC------CCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhC-C-CCCCCEEEeCCCCEEecHHHHHH
Confidence 3689988 599999999999999999998887643 23346677765 4 789999997 5555555555433
No 46
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=97.96 E-value=2.2e-05 Score=55.96 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=56.0
Q ss_pred EEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825 74 IYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN 149 (218)
Q Consensus 74 lYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~ 149 (218)
||... .|++|++++.+|+.+||.|+.+++..... ..++.++. + ..++|.+..+|..|.+...|.+..
T Consensus 1 Ly~~~------~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~-p-~~~vPvL~~~g~~l~dS~~I~~yL 67 (75)
T PF13417_consen 1 LYGFP------GSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLN-P-KGKVPVLVDDGEVLTDSAAIIEYL 67 (75)
T ss_dssp EEEET------TSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHS-T-TSBSSEEEETTEEEESHHHHHHHH
T ss_pred CCCcC------CChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhc-c-cccceEEEECCEEEeCHHHHHHHH
Confidence 57777 59999999999999999999999876543 67777776 4 889999999999999888876553
No 47
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=97.94 E-value=3.1e-05 Score=54.32 Aligned_cols=68 Identities=18% Similarity=0.161 Sum_probs=53.1
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCC--CHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSL--HGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE 147 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~--d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~ 147 (218)
+.||+.. .|++|++++.+|+.+|++|+.++++. .....+++.+.. . ..++|.+.++|..+-....+.+
T Consensus 1 ~~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~-p-~~~vP~l~~~~~~l~es~aI~~ 70 (74)
T cd03045 1 IDLYYLP------GSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLN-P-QHTVPTLVDNGFVLWESHAILI 70 (74)
T ss_pred CEEEeCC------CCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhC-c-CCCCCEEEECCEEEEcHHHHHH
Confidence 3689988 59999999999999999999988864 334457777765 3 6789999888876666555544
No 48
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.94 E-value=0.0001 Score=53.92 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=43.9
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhC----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECC
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKG 136 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G 136 (218)
+|++|++. +|.-|..++.+|+.. ++.++++||..|++ |.++. ...+|+++++|
T Consensus 1 ~l~l~~k~------~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y---~~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKP------GCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKY---GYRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-S------SSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHS---CTSTSEEEETT
T ss_pred CEEEEcCC------CCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHh---cCCCCEEEEcC
Confidence 58999999 799999999999964 46799999998865 66676 46899999999
No 49
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.90 E-value=2.9e-05 Score=60.51 Aligned_cols=45 Identities=24% Similarity=0.425 Sum_probs=41.1
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL 122 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~ 122 (218)
|.||+.+ +|++|++++++|+++||.|+++|+..++..+++|.+++
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~ 45 (117)
T TIGR01617 1 IKVYGSP------NCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDIL 45 (117)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHH
Confidence 5799999 69999999999999999999999999888888887776
No 50
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.88 E-value=0.0001 Score=52.37 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=42.8
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhh----CC--CcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCE
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEV----NR--VVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGR 137 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~----~g--V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~ 137 (218)
+|+||+++| |++|..++.+|+. ++ +.+..+|+..+.+. .+.. | ..++|.++++|+
T Consensus 2 ~v~~f~~~~------C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~----~~~~-~-v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPT------CPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQK----AMEY-G-IMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCC------CcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHH----HHHc-C-CccCCEEEECCE
Confidence 488999995 9999999999864 33 66788888776543 3344 5 788999999997
No 51
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.87 E-value=3.7e-05 Score=59.87 Aligned_cols=45 Identities=22% Similarity=0.465 Sum_probs=40.7
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL 122 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~ 122 (218)
|.||+++ +|++|++++++|+++||.|+++|+..++.-+++|++++
T Consensus 2 i~iY~~~------~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~ 46 (115)
T cd03032 2 IKLYTSP------SCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEIL 46 (115)
T ss_pred EEEEeCC------CCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHH
Confidence 6799999 69999999999999999999999988877777877776
No 52
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.84 E-value=6.8e-05 Score=52.10 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=53.1
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC--HHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE 147 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d--~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~ 147 (218)
+.||+.. .|++|.+++.+|+.+|++|++++++.. ....+++.+.. . ..++|.+..+|..|.....+.+
T Consensus 1 ~~Ly~~~------~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~-p-~~~vP~l~~~~~~i~es~aI~~ 70 (73)
T cd03056 1 MKLYGFP------LSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALN-P-NGEVPVLELDGRVLAESNAILV 70 (73)
T ss_pred CEEEeCC------CCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhC-C-CCCCCEEEECCEEEEcHHHHHH
Confidence 3688888 589999999999999999999998742 33456677765 3 7789999999887766665543
No 53
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.75 E-value=5e-05 Score=60.97 Aligned_cols=45 Identities=18% Similarity=0.384 Sum_probs=38.0
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL 122 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~ 122 (218)
|+||+.+ .|+.|++++++|+++||.|+++|+..++-.+++|.+++
T Consensus 2 i~iY~~~------~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l 46 (132)
T PRK13344 2 IKIYTIS------SCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAIL 46 (132)
T ss_pred EEEEeCC------CCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHH
Confidence 7899999 69999999999999999999999987665555555543
No 54
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.74 E-value=5.5e-05 Score=60.68 Aligned_cols=45 Identities=29% Similarity=0.565 Sum_probs=38.9
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL 122 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~ 122 (218)
|+||+.+ .|+.|++++++|+++||.|+++|+..++-..++|++++
T Consensus 2 i~iY~~~------~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l 46 (131)
T PRK12559 2 VVLYTTA------SCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSIL 46 (131)
T ss_pred EEEEeCC------CChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHH
Confidence 7899999 69999999999999999999999987766666665554
No 55
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.67 E-value=6e-05 Score=58.18 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=39.8
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL 122 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~ 122 (218)
|+||+.+ +|+.|++++++|+++|+.|+++|+..++--.+||++++
T Consensus 1 i~iy~~~------~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l 45 (105)
T cd03035 1 ITLYGIK------NCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWL 45 (105)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHH
Confidence 5799999 69999999999999999999999988776677777765
No 56
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.63 E-value=8.3e-05 Score=58.24 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=40.1
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL 122 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~ 122 (218)
.|+||+.+ .|+.|++++++|+++|+.|+++|+..++--+++|++++
T Consensus 1 ~i~iy~~p------~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l 46 (113)
T cd03033 1 DIIFYEKP------GCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFF 46 (113)
T ss_pred CEEEEECC------CCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHH
Confidence 37899999 79999999999999999999999987766667776665
No 57
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.62 E-value=0.00048 Score=48.36 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=49.3
Q ss_pred CCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHH
Q 027825 81 GVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNE 150 (218)
Q Consensus 81 giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e 150 (218)
++...|++|.+++.+|+.+|++|+.+++.... . .....+|.+.++|+.+.+...+.+..+
T Consensus 11 ~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~--~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 11 GLPSLSPECLKVETYLRMAGIPYEVVFSSNPW--------R--SPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCCCCHHHHHHHHHHHhCCCceEEEecCCcc--------c--CCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 44557999999999999999999999997642 2 236789999999999998888776544
No 58
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.60 E-value=0.00018 Score=53.79 Aligned_cols=59 Identities=19% Similarity=0.374 Sum_probs=46.5
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEe
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVG 140 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IG 140 (218)
=.|.+|+++ +|++|..++.+++.. +|.|..+|++..++ +.+.. | ...+|.++|||+.++
T Consensus 14 v~i~~F~~~------~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e----~a~~~-~-V~~vPt~vidG~~~~ 77 (89)
T cd03026 14 INFETYVSL------SCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD----EVEER-G-IMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEEECC------CCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH----HHHHc-C-CccCCEEEECCEEEE
Confidence 358999998 599999998888665 68899999986643 33344 5 888999999997765
No 59
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.57 E-value=0.00038 Score=49.09 Aligned_cols=69 Identities=14% Similarity=0.046 Sum_probs=50.5
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL 148 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l 148 (218)
+.||+.. .+++|.+++.+|+.+|++|++++++.. ....+++++. ....++|.+..+|..+.....+.+.
T Consensus 1 ~~Ly~~~------~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~-p~~~~vP~l~~~~~~l~eS~aI~~y 69 (74)
T cd03058 1 VKLLGAW------ASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASN-PVHKKIPVLLHNGKPICESLIIVEY 69 (74)
T ss_pred CEEEECC------CCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhC-CCCCCCCEEEECCEEeehHHHHHHH
Confidence 3678777 589999999999999999999887654 2234555654 2137899998888766666655444
No 60
>PHA02125 thioredoxin-like protein
Probab=97.53 E-value=0.00047 Score=49.38 Aligned_cols=55 Identities=11% Similarity=0.178 Sum_probs=39.5
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEE
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYV 139 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~I 139 (218)
|++|+++| |+.|+.++.+|++..+.|..+|.+.+. ++.+.. + ...+|.+. +|+.+
T Consensus 2 iv~f~a~w------C~~Ck~~~~~l~~~~~~~~~vd~~~~~----~l~~~~-~-v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEW------CANCKMVKPMLANVEYTYVDVDTDEGV----ELTAKH-H-IRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCC------CHhHHHHHHHHHHHhheEEeeeCCCCH----HHHHHc-C-CceeCeEE-CCEEE
Confidence 78999995 999999999998765445445544443 455555 5 88999976 66543
No 61
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=97.45 E-value=0.00068 Score=47.71 Aligned_cols=70 Identities=14% Similarity=-0.031 Sum_probs=54.0
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH--HHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG--QFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN 149 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~--~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~ 149 (218)
+.||+.. .+++|.+++-+|...|++|+.+.++... ...+++++.. . ...+|.+..+|..|.....+.+..
T Consensus 2 ~~Ly~~~------~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-P-~~~vP~l~~~g~~l~es~aI~~yL 73 (76)
T cd03053 2 LKLYGAA------MSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARN-P-FGQIPALEDGDLKLFESRAITRYL 73 (76)
T ss_pred eEEEeCC------CChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhC-C-CCCCCEEEECCEEEEcHHHHHHHH
Confidence 5788888 5899999999999999999998876532 2335666665 3 788999988888777776665554
No 62
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.38 E-value=0.0007 Score=48.80 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=41.2
Q ss_pred EEEEEeecCCCCCCChHHHHH----HHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEE
Q 027825 72 VVIYTTSLRGVRRTYEDCNRV----RSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYV 139 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~v----r~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~I 139 (218)
|.+|+ +| |+.|+.+ +++++++++.++.++|+.. +++.+ . | ..++|.|+|||+.+
T Consensus 3 i~~~a-~~------C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~----~~a~~-~-~-v~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TG------CANCQMTEKNVKKAVEELGIDAEFEKVTDM----NEILE-A-G-VTATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CC------CcCHHHHHHHHHHHHHHcCCCeEEEEeCCH----HHHHH-c-C-CCcCCEEEECCEEE
Confidence 56666 74 9999999 6688889999999999832 22333 3 5 89999999999665
No 63
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.35 E-value=0.00061 Score=48.65 Aligned_cols=69 Identities=19% Similarity=0.158 Sum_probs=53.2
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH--HHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG--QFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL 148 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~--~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l 148 (218)
++||... .++.|.+++-+|+.+|++|+.+++.... ....++.++. . ..++|.+..+|..+.....|.+.
T Consensus 1 ~~ly~~~------~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~in-P-~g~vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 1 LVLYHWT------QSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLN-P-TGEVPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred CEEecCC------CCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhC-c-CCCCCEEEECCEEEEcHHHHHHH
Confidence 4688888 5899999999999999999988876532 2345677775 3 78999999888877766665543
No 64
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.32 E-value=0.0013 Score=47.27 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=34.9
Q ss_pred CChHHHHHHH----HHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEE
Q 027825 85 TYEDCNRVRS----TFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRY 138 (218)
Q Consensus 85 tc~~C~~vr~----iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~ 138 (218)
+|++|..+.+ ++..+++.++..|+. + .+++ ... | ..++|.++|||+.
T Consensus 9 ~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-~---~~~~-~~y-g-v~~vPalvIng~~ 59 (76)
T PF13192_consen 9 GCPYCPELVQLLKEAAEELGIEVEIIDIE-D---FEEI-EKY-G-VMSVPALVINGKV 59 (76)
T ss_dssp SCTTHHHHHHHHHHHHHHTTEEEEEEETT-T---HHHH-HHT-T--SSSSEEEETTEE
T ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEEEcc-C---HHHH-HHc-C-CCCCCEEEECCEE
Confidence 5999997766 556679999999983 3 2344 344 6 9999999999974
No 65
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.31 E-value=0.0013 Score=46.57 Aligned_cols=69 Identities=9% Similarity=0.004 Sum_probs=53.6
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN 149 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~ 149 (218)
++||... .++.|.+++.+|...|++|+.+.++.+ .+.++++... . ..++|.+..+|..|.....+.+..
T Consensus 2 ~~Ly~~~------~~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~-p-~~~vP~l~~~~~~l~es~aI~~yL 70 (73)
T cd03076 2 YTLTYFP------VRGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKM-L-FGQLPCFKDGDLTLVQSNAILRHL 70 (73)
T ss_pred cEEEEeC------CcchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccC-C-CCCCCEEEECCEEEEcHHHHHHHH
Confidence 5788877 378999999999999999999988763 4455666654 2 678999999998877777665543
No 66
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=97.29 E-value=0.00084 Score=60.80 Aligned_cols=86 Identities=19% Similarity=0.257 Sum_probs=66.1
Q ss_pred CCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE 147 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~ 147 (218)
..=+++||--. |||||.+||++|+=+||.|..+.|. +-.|+|++=-+ ...||.+.|+|+-+-...-|..
T Consensus 87 s~L~l~LyQye------tCPFCcKVrAFLDyhgisY~VVEVn--pV~r~eIk~Ss---ykKVPil~~~Geqm~dSsvIIs 155 (370)
T KOG3029|consen 87 SPLDLVLYQYE------TCPFCCKVRAFLDYHGISYAVVEVN--PVLRQEIKWSS---YKKVPILLIRGEQMVDSSVIIS 155 (370)
T ss_pred CCceEEEEeec------cCchHHHHHHHHhhcCCceEEEEec--chhhhhccccc---cccccEEEeccceechhHHHHH
Confidence 33579999988 8999999999999999999887774 55677776433 8889999999986666655555
Q ss_pred HH------HhCcHHHHHhhhhhh
Q 027825 148 LN------ESGKLGRMLRSARVE 164 (218)
Q Consensus 148 l~------e~G~L~~lL~~~~~~ 164 (218)
+. ....|+++.+..|+.
T Consensus 156 ~laTyLq~~~q~l~eiiq~yPa~ 178 (370)
T KOG3029|consen 156 LLATYLQDKRQDLGEIIQMYPAT 178 (370)
T ss_pred HHHHHhccCCCCHHHHHHhcccc
Confidence 44 345677777777754
No 67
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.25 E-value=0.00091 Score=46.42 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=50.3
Q ss_pred EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH--HHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825 73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG--QFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE 147 (218)
Q Consensus 73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~--~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~ 147 (218)
.||+.. .++.|.+++.+|+.+|++|+.+.+++.. ....++++.. . ...+|.+..+|..+.....+.+
T Consensus 2 ~L~~~~------~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~-p-~~~vP~l~~~~~~l~es~aI~~ 70 (73)
T cd03042 2 ILYSYF------RSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALN-P-QGLVPTLVIDGLVLTQSLAIIE 70 (73)
T ss_pred EEecCC------CCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhC-C-CCCCCEEEECCEEEEcHHHHHH
Confidence 567666 4788999999999999999998886532 2346677765 3 7899999988887766555543
No 68
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=97.21 E-value=0.0026 Score=48.21 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=55.3
Q ss_pred EEEEEeecCCC--CCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825 72 VVIYTTSLRGV--RRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN 149 (218)
Q Consensus 72 VVlYttsl~gi--R~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~ 149 (218)
+-+|.+.-++. ...|++|++++-+|..+||.|+..+|++... -+++.++.+ ...+|.+..+|..|...+.+.+..
T Consensus 6 ~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP--~g~vPvL~~~~~~i~eS~~I~eYL 82 (91)
T cd03061 6 IELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAP--GTQPPFLLYNGEVKTDNNKIEEFL 82 (91)
T ss_pred EEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCC--CCCCCEEEECCEEecCHHHHHHHH
Confidence 55565543321 2469999999999999999999988875431 245667652 678999998888888777776654
Q ss_pred H
Q 027825 150 E 150 (218)
Q Consensus 150 e 150 (218)
+
T Consensus 83 d 83 (91)
T cd03061 83 E 83 (91)
T ss_pred H
Confidence 3
No 69
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.17 E-value=0.0017 Score=45.38 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=50.5
Q ss_pred EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825 73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL 148 (218)
Q Consensus 73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l 148 (218)
+||... .++.|.+++.+|+.+|++|+.++++.......++.+.. ...++|.+..+|..|.....+.+.
T Consensus 2 ~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~--p~~~vP~L~~~~~~l~es~aI~~y 69 (72)
T cd03039 2 KLTYFN------IRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTL--PFGQLPVLEIDGKKLTQSNAILRY 69 (72)
T ss_pred EEEEEc------CcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCC--cCCCCCEEEECCEEEEecHHHHHH
Confidence 577776 47899999999999999999999875432223344443 378899999888877766665443
No 70
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=97.09 E-value=0.0023 Score=45.83 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=50.6
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC--HHHHHHHHHHhCCCcccccEEEEC---CEEEecchhhH
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIK---GRYVGGVDELT 146 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d--~~~r~eLk~~~~g~~~tvPqVFI~---G~~IGG~del~ 146 (218)
+.||... . ++|.+++.+|+..|++|+.+.+... ....+++.+.. . ...+|.+..+ |..|.....|.
T Consensus 2 ~~Ly~~~------~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~-p-~~~vP~l~~~~~~g~~l~eS~aI~ 72 (81)
T cd03048 2 ITLYTHG------T-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKIN-P-NGRIPAIVDHNGTPLTVFESGAIL 72 (81)
T ss_pred eEEEeCC------C-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhC-c-CCCCCEEEeCCCCceEEEcHHHHH
Confidence 5788876 4 9999999999999999988777642 34456777765 3 7889999887 66666555554
Q ss_pred hH
Q 027825 147 EL 148 (218)
Q Consensus 147 ~l 148 (218)
+.
T Consensus 73 ~y 74 (81)
T cd03048 73 LY 74 (81)
T ss_pred HH
Confidence 43
No 71
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.02 E-value=0.0019 Score=45.17 Aligned_cols=66 Identities=12% Similarity=-0.012 Sum_probs=48.4
Q ss_pred EEEEeecCCCCCCChHHHHHHHHHhh--CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE-CCEEEecchhhHh
Q 027825 73 VIYTTSLRGVRRTYEDCNRVRSTFEV--NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI-KGRYVGGVDELTE 147 (218)
Q Consensus 73 VlYttsl~giR~tc~~C~~vr~iL~~--~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI-~G~~IGG~del~~ 147 (218)
.||+.. .+++|.+++.+|+. .|++|+.+.+... ....++.+.. . ..++|.+.. +|..+.....+.+
T Consensus 2 ~Ly~~~------~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~-p-~~~vP~l~~~~g~~l~es~aI~~ 70 (73)
T cd03049 2 KLLYSP------TSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVN-P-LGKIPALVLDDGEALFDSRVICE 70 (73)
T ss_pred EEecCC------CCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhC-C-CCCCCEEEECCCCEEECHHHHHh
Confidence 578777 58999999999999 8999999988642 2234555654 3 788999975 6766665555543
No 72
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.0011 Score=52.46 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=39.1
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL 122 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~ 122 (218)
.|.||..+ .|.-|+++++.|+++||.|.++|+..++--+++|++++
T Consensus 2 ~itiy~~p------~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l 47 (117)
T COG1393 2 MITIYGNP------NCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKIL 47 (117)
T ss_pred eEEEEeCC------CChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHH
Confidence 38999999 69999999999999999999999976665566666554
No 73
>PRK10387 glutaredoxin 2; Provisional
Probab=96.97 E-value=0.0031 Score=52.45 Aligned_cols=70 Identities=13% Similarity=0.233 Sum_probs=52.7
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEE-EECCEEEecchhhHhHHH
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRV-FIKGRYVGGVDELTELNE 150 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV-FI~G~~IGG~del~~l~e 150 (218)
+.||+.. .||+|.+|+-+|+.+||+|+.++++..... .. .+.. + ..++|.| ..+|..|.....|.+..+
T Consensus 1 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~-p-~~~VPvL~~~~g~~l~eS~aI~~yL~ 70 (210)
T PRK10387 1 MKLYIYD------HCPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMI-G-QKQVPILQKDDGSYMPESLDIVHYID 70 (210)
T ss_pred CEEEeCC------CCchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhc-C-CcccceEEecCCeEecCHHHHHHHHH
Confidence 4688877 599999999999999999999998654322 22 2343 3 6799999 567888888877766654
Q ss_pred h
Q 027825 151 S 151 (218)
Q Consensus 151 ~ 151 (218)
+
T Consensus 71 ~ 71 (210)
T PRK10387 71 E 71 (210)
T ss_pred H
Confidence 3
No 74
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=96.97 E-value=0.0013 Score=51.36 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=38.7
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL 122 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~ 122 (218)
|.||+.+ +|.-|++++++|+++|+.|+++|+..++--.++|.+++
T Consensus 1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l 45 (114)
T TIGR00014 1 VTIYHNP------RCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIF 45 (114)
T ss_pred CEEEECC------CCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHH
Confidence 5799999 79999999999999999999999987665566666665
No 75
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.95 E-value=0.0013 Score=50.97 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=37.0
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL 122 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~ 122 (218)
|+||+.+ +|.-|++++++|+++++.|+++|+..++--.++|.+++
T Consensus 1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l 45 (112)
T cd03034 1 ITIYHNP------RCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELL 45 (112)
T ss_pred CEEEECC------CCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHH
Confidence 5799999 79999999999999999999999976654455555443
No 76
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=96.92 E-value=0.0029 Score=53.49 Aligned_cols=68 Identities=15% Similarity=0.244 Sum_probs=52.2
Q ss_pred EEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE-ECCEEEecchhhHhHHHh
Q 027825 74 IYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF-IKGRYVGGVDELTELNES 151 (218)
Q Consensus 74 lYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF-I~G~~IGG~del~~l~e~ 151 (218)
||+.. .||+|.+|+-+|..+|++|+.+++..+.. ... .+.. . ..++|.+. .+|..|.+...|.+..++
T Consensus 2 Ly~~~------~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~-~~~n-p-~g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 2 LYIYD------HCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETP-IRMI-G-AKQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred eecCC------CCChHHHHHHHHHHcCCCeEEEECCCCcc-hhH-HHhc-C-CCCcceEEeeCCeEeccHHHHHHHHHH
Confidence 67777 59999999999999999999999865432 122 3443 3 67899997 788899998888776543
No 77
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.88 E-value=0.0019 Score=51.67 Aligned_cols=45 Identities=9% Similarity=0.206 Sum_probs=36.4
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHH
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDL 121 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~ 121 (218)
.|+||..+ .|.-|++++++|+++||.|+++|+-.++--+++|+.+
T Consensus 2 ~i~iY~~p------~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~ 46 (126)
T TIGR01616 2 TIIFYEKP------GCANNARQKAALKASGHDVEVQDILKEPWHADTLRPY 46 (126)
T ss_pred eEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHH
Confidence 47899999 7999999999999999999999986554334444443
No 78
>PRK10853 putative reductase; Provisional
Probab=96.85 E-value=0.0016 Score=51.28 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=38.8
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL 122 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~ 122 (218)
|+||..+ .|.-|++++++|+++||.|+++|+-.++--.++|++++
T Consensus 2 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l 46 (118)
T PRK10853 2 VTLYGIK------NCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFI 46 (118)
T ss_pred EEEEcCC------CCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHH
Confidence 6799999 79999999999999999999999977665566666665
No 79
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=96.81 E-value=0.0093 Score=42.28 Aligned_cols=68 Identities=12% Similarity=0.172 Sum_probs=50.5
Q ss_pred EEEEEeec-CCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825 72 VVIYTTSL-RGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN 149 (218)
Q Consensus 72 VVlYttsl-~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~ 149 (218)
++||.... .++...+++|.+|+.+|+..|++|+.+.++.. +.. ...++|.+..+|+.|.....+.+..
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~--------~~~--p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA--------KRS--PKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc--------cCC--CCCCCCEEEECCEEEcCHHHHHHHH
Confidence 45565542 23344689999999999999999999888641 333 3788999999999888887776543
No 80
>PRK10026 arsenate reductase; Provisional
Probab=96.80 E-value=0.0022 Score=52.32 Aligned_cols=46 Identities=11% Similarity=0.066 Sum_probs=39.3
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL 122 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~ 122 (218)
.|.||+.+ .|.-|++++++|+++|+.|+++|+-.++--.+||+.++
T Consensus 3 ~i~iY~~p------~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l 48 (141)
T PRK10026 3 NITIYHNP------ACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLI 48 (141)
T ss_pred EEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHH
Confidence 58899999 79999999999999999999999977665556666554
No 81
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.78 E-value=0.0056 Score=47.24 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=40.4
Q ss_pred CCcEEEEE-eecCCCCCCChHHHHHHHHHhhCC-----CcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825 69 SDGVVIYT-TSLRGVRRTYEDCNRVRSTFEVNR-----VVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 69 ~~kVVlYt-tsl~giR~tc~~C~~vr~iL~~~g-----V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI 134 (218)
...|+||+ ++| |++|+.++.+|++.. +.|..+|++.++ ++.+.. + ..++|.+++
T Consensus 22 ~~~vvv~f~a~w------C~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----~l~~~~-~-v~~vPt~~i 81 (113)
T cd02975 22 PVDLVVFSSKEG------CQYCEVTKQLLEELSELSDKLKLEIYDFDEDK----EKAEKY-G-VERVPTTIF 81 (113)
T ss_pred CeEEEEEeCCCC------CCChHHHHHHHHHHHHhcCceEEEEEeCCcCH----HHHHHc-C-CCcCCEEEE
Confidence 33476764 564 999999999997643 678899988764 455556 5 889999987
No 82
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.72 E-value=0.0022 Score=50.48 Aligned_cols=50 Identities=30% Similarity=0.676 Sum_probs=41.4
Q ss_pred CCcCCCCCCCcceeeCCCCCCCceeeecCC----ceeccCCcCcCCcccCCCCC
Q 027825 168 GRQACEGCGGARFVPCFDCGGSCKVVLANG----DKQRCGVCNENGLVHCPACS 217 (218)
Q Consensus 168 ~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~----~~~rC~~CnenGl~~C~~C~ 217 (218)
....|..|.|.+...|..|+|+-.+..... ...+|+.|+=.|.+.|+.|.
T Consensus 40 ~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~~C~~C~ 93 (111)
T PLN03165 40 NTQPCFPCSGTGAQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLTCTTCQ 93 (111)
T ss_pred cCCCCCCCCCCCCcCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcceeeCCCCC
Confidence 467899999999999999999966654322 26799999999999999995
No 83
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.69 E-value=0.006 Score=38.42 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=43.0
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHh-----hCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECC
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFE-----VNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKG 136 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~-----~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G 136 (218)
+++|..+ .|++|.+++..|. ..++.|..+|+.......+.+.. . + ...+|.+++.+
T Consensus 1 l~~~~~~------~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAP------WCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKR-Y-G-VGGVPTLVVFG 61 (69)
T ss_pred CEEEECC------CChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHh-C-C-CccccEEEEEe
Confidence 4567777 4999999999999 67899999999887765554223 2 3 78899998765
No 84
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=96.67 E-value=0.0044 Score=44.76 Aligned_cols=66 Identities=21% Similarity=0.197 Sum_probs=48.3
Q ss_pred CCCCCChHHHHHHHHHhhCCCcEEEEECCCC--HHHHHHHHHHhCCCcccccEEEEC-CEEEecchhhHhHH
Q 027825 81 GVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIK-GRYVGGVDELTELN 149 (218)
Q Consensus 81 giR~tc~~C~~vr~iL~~~gV~~~erDVs~d--~~~r~eLk~~~~g~~~tvPqVFI~-G~~IGG~del~~l~ 149 (218)
+.+..+++|.+++.+|..+|++|+.+.++.. .....++ +.. . ...+|.+..+ |..|.+...+.+..
T Consensus 11 ~~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~-p-~~~vP~L~~~~~~~l~eS~aI~~yL 79 (84)
T cd03038 11 PVRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSG-G-FYTVPVIVDGSGEVIGDSFAIAEYL 79 (84)
T ss_pred CCCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCC-C-CceeCeEEECCCCEEeCHHHHHHHH
Confidence 3456799999999999999999998877643 2223344 333 3 7889999888 78887777766553
No 85
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=96.63 E-value=0.01 Score=41.90 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=50.2
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC--HHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL 148 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d--~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l 148 (218)
+.||... ..+.|.+++-+|+..|++|+.+.++.. ....+++.+.. . ...+|.+..+|..|-....+.+.
T Consensus 1 ~~ly~~~------~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~-p-~~~vP~L~~~~~~l~eS~aI~~Y 71 (76)
T cd03050 1 LKLYYDL------MSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKIN-P-FGKVPAIVDGDFTLAESVAILRY 71 (76)
T ss_pred CEEeeCC------CChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhC-c-CCCCCEEEECCEEEEcHHHHHHH
Confidence 3578887 578999999999999999998887642 22335666665 3 78999998887666555554433
No 86
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.007 Score=44.78 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=45.0
Q ss_pred EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHH-HHHHHHH---------hCCCcccccEEEECC-EEEec
Q 027825 73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQF-LNELKDL---------LGGETVTVPRVFIKG-RYVGG 141 (218)
Q Consensus 73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~-r~eLk~~---------~~g~~~tvPqVFI~G-~~IGG 141 (218)
++|.+. .||+|..+.+.|++.+|.|+++||...-.- ++-|+-+ -+.+...+|.+..++ +.|=|
T Consensus 5 ~lfgsn------~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 5 KLFGSN------LCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred eeeccc------cCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 788888 499999999999999999999999654322 2222111 112277889997655 44433
Q ss_pred chhh
Q 027825 142 VDEL 145 (218)
Q Consensus 142 ~del 145 (218)
+++
T Consensus 79 -~Dl 81 (85)
T COG4545 79 -DDL 81 (85)
T ss_pred -chh
Confidence 444
No 87
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.50 E-value=0.011 Score=41.89 Aligned_cols=66 Identities=17% Similarity=0.022 Sum_probs=50.5
Q ss_pred CCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH-HHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825 80 RGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG-QFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE 147 (218)
Q Consensus 80 ~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~-~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~ 147 (218)
.+.+..++++.+++-+|+.+|++|+.+.+.... +...++++.. . ...+|.+..+|..|.....+.+
T Consensus 4 ~~~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~n-P-~g~vP~L~~~g~~l~eS~aI~~ 70 (73)
T cd03043 4 IGNKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFS-P-TGKVPVLVDGGIVVWDSLAICE 70 (73)
T ss_pred EcCCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhC-C-CCcCCEEEECCEEEEcHHHHHH
Confidence 455678999999999999999999998886532 2345676665 3 7899999999887766665543
No 88
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=96.48 E-value=0.0093 Score=42.20 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=49.3
Q ss_pred EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH-HHHHHHHHHhCCCcccccEEEEC-CEEEecchhhHh
Q 027825 73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG-QFLNELKDLLGGETVTVPRVFIK-GRYVGGVDELTE 147 (218)
Q Consensus 73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~-~~r~eLk~~~~g~~~tvPqVFI~-G~~IGG~del~~ 147 (218)
.||+.. .++.|.+++-+|+..|++|+.++|+... ...++++++. ...++|.+..+ |..|-....|.+
T Consensus 2 ~Ly~~~------~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~n--P~~~vP~L~~~~g~~l~es~aI~~ 70 (75)
T cd03044 2 TLYTYP------GNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKF--PLGKVPAFEGADGFCLFESNAIAY 70 (75)
T ss_pred eEecCC------CCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhC--CCCCCCEEEcCCCCEEeeHHHHHH
Confidence 467766 5899999999999999999999887643 2235666765 37899999885 666554444433
No 89
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.36 E-value=0.027 Score=39.12 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=41.9
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhh-----CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE--CCEEEe
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEV-----NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI--KGRYVG 140 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~-----~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI--~G~~IG 140 (218)
+++|+++ .|+.|..+...|++ .++.|..+|++.+.++.+. . + ...+|.+++ +|+.++
T Consensus 14 ll~~~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~-~-v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 14 VVDFWAP------WCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEE----Y-G-VRSIPTFLFFKNGKEVD 77 (93)
T ss_pred EEEEECC------CChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHh----c-C-cccccEEEEEECCEEEE
Confidence 5555555 59999999999988 7888999999876654333 3 4 677899766 776433
No 90
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=96.34 E-value=0.016 Score=48.74 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=54.0
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE 147 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~ 147 (218)
..+.||+.. .|++|.+++-+|+.+|++|+.+.|+.. ...+++.++. ...++|.+..+|..|--...|.+
T Consensus 9 ~~~~Ly~~~------~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~n--P~g~VPvL~~~g~~l~ES~AIl~ 77 (211)
T PRK09481 9 SVMTLFSGP------TDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLN--PYQSVPTLVDRELTLYESRIIME 77 (211)
T ss_pred CeeEEeCCC------CChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhC--CCCCCCEEEECCEEeeCHHHHHH
Confidence 358899987 589999999999999999999998753 2335677765 27799999988877665555544
No 91
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.30 E-value=0.016 Score=43.09 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=38.0
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHH------hh---CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTF------EV---NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL------~~---~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI 134 (218)
+|.|+++ +|++|+.....+ .. .++.+..+|++.+.....++.+.. + ..++|.+++
T Consensus 15 lv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~-~-i~~~Pti~~ 78 (104)
T cd02953 15 FVDFTAD------WCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRF-G-VFGPPTYLF 78 (104)
T ss_pred EEEEEcc------hhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHc-C-CCCCCEEEE
Confidence 5566666 499999887433 11 167788889887655556677766 5 888998854
No 92
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=96.27 E-value=0.014 Score=40.73 Aligned_cols=68 Identities=10% Similarity=-0.087 Sum_probs=49.6
Q ss_pred EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC--HHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825 73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN 149 (218)
Q Consensus 73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d--~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~ 149 (218)
.||+... +.+.+++.+|+..|++|+.+.++.. .....++++.. . ...+|.+..+|..|.....+.+..
T Consensus 2 ~l~~~~~-------~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-p-~~~vP~l~~~g~~l~es~aI~~yL 71 (76)
T cd03046 2 TLYHLPR-------SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAIN-P-LGKVPVLVDGDLVLTESAAIILYL 71 (76)
T ss_pred EEEeCCC-------CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcC-C-CCCCCEEEECCEEEEcHHHHHHHH
Confidence 5776552 4688999999999999998887643 22345566655 3 788999998988877777665543
No 93
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.05 E-value=0.019 Score=48.98 Aligned_cols=55 Identities=11% Similarity=0.241 Sum_probs=41.6
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECC
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKG 136 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G 136 (218)
-.|++|+++| |++|..++.+|+.. .|.+..+|+..+++. .+.. | ..++|.++|++
T Consensus 135 v~I~~F~a~~------C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~----~~~~-~-V~~vPtl~i~~ 194 (215)
T TIGR02187 135 VRIEVFVTPT------CPYCPYAVLMAHKFALANDKILGEMIEANENPDL----AEKY-G-VMSVPKIVINK 194 (215)
T ss_pred cEEEEEECCC------CCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHH----HHHh-C-CccCCEEEEec
Confidence 3577789985 99999999988864 466777888777543 3445 5 88999998875
No 94
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.02 E-value=0.017 Score=44.33 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=27.7
Q ss_pred CChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825 85 TYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL 122 (218)
Q Consensus 85 tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~ 122 (218)
+|.-|++++++|+++||.|+++|+..++--+++|.+++
T Consensus 5 ~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l 42 (110)
T PF03960_consen 5 NCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELL 42 (110)
T ss_dssp T-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHH
Confidence 79999999999999999999999988665566666554
No 95
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=95.97 E-value=0.03 Score=39.21 Aligned_cols=66 Identities=11% Similarity=-0.000 Sum_probs=49.1
Q ss_pred EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC--HHHHHHHHHHhCCCcccccEEEECCEEEecchhhH
Q 027825 73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELT 146 (218)
Q Consensus 73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d--~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~ 146 (218)
.||... ..+.+.+++.+|+.+|++|+.+++... ....+++++.. . ..++|.+..+|..|.....+.
T Consensus 2 ~l~~~~------~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~n-P-~~~vP~L~~~~~~l~eS~aI~ 69 (73)
T cd03047 2 TIWGRR------SSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMN-P-NGRVPVLEDGDFVLWESNAIL 69 (73)
T ss_pred EEEecC------CCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhC-C-CCCCCEEEECCEEEECHHHHH
Confidence 577776 368999999999999999998887642 22345666665 3 789999988887766555543
No 96
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=95.96 E-value=0.023 Score=40.02 Aligned_cols=66 Identities=12% Similarity=0.048 Sum_probs=46.3
Q ss_pred EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH--HHHHHHHHHhCCCcccccEEEEC-CEEEecchhhHh
Q 027825 73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG--QFLNELKDLLGGETVTVPRVFIK-GRYVGGVDELTE 147 (218)
Q Consensus 73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~--~~r~eLk~~~~g~~~tvPqVFI~-G~~IGG~del~~ 147 (218)
.||+... + .+.+++.+|..+|+.|+.+++.... ...+++++.. . ...+|.+..+ |..+.....|.+
T Consensus 2 ~Ly~~~~------~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~n-p-~~~vP~l~~~~g~~l~eS~aI~~ 70 (77)
T cd03057 2 KLYYSPG------A-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAIN-P-KGQVPALVLDDGEVLTESAAILQ 70 (77)
T ss_pred EEEeCCC------C-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhC-C-CCCCCEEEECCCcEEEcHHHHHH
Confidence 5777662 3 4788999999999999988776532 2346777765 4 7899999887 665555544433
No 97
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=95.93 E-value=0.0088 Score=42.12 Aligned_cols=63 Identities=22% Similarity=0.135 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHhhCCCcEEEEECCC---CHHHHHHHHHHhCCCcccccEEEE-CCEEEecchhhHhHHH
Q 027825 86 YEDCNRVRSTFEVNRVVTDERDVSL---HGQFLNELKDLLGGETVTVPRVFI-KGRYVGGVDELTELNE 150 (218)
Q Consensus 86 c~~C~~vr~iL~~~gV~~~erDVs~---d~~~r~eLk~~~~g~~~tvPqVFI-~G~~IGG~del~~l~e 150 (218)
||++.+++-+|+.+|++|+..-+.. +.....++.++. + ..++|.+.. +|+.|.....+.++.+
T Consensus 2 sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~-p-~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 2 SPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALN-P-RGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp -HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHS-T-T-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred chHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccC-c-CeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 8999999999999999988766522 222225677776 4 789999998 8898888887776654
No 98
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=95.89 E-value=0.035 Score=41.02 Aligned_cols=57 Identities=21% Similarity=0.355 Sum_probs=40.4
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhh------CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE--CCEEEe
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEV------NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI--KGRYVG 140 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~------~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI--~G~~IG 140 (218)
+++|+++ .|+.|..+...|+. .++.+..+|++.+.++ .+.. + ...+|.+++ +|+.++
T Consensus 17 lv~f~a~------~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l----~~~~-~-v~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 17 LVLYTSP------TCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEI----AEAA-G-IMGTPTVQFFKDKELVK 81 (97)
T ss_pred EEEEECC------CChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHH----HHHC-C-CeeccEEEEEECCeEEE
Confidence 4455556 59999999988876 4577889999877644 4444 5 778898754 666553
No 99
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=95.87 E-value=0.042 Score=48.23 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=55.7
Q ss_pred EEEEEeecCCCC--CCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825 72 VVIYTTSLRGVR--RTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN 149 (218)
Q Consensus 72 VVlYttsl~giR--~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~ 149 (218)
|.||.+....-+ ..|++|++|+-+|..+|++|+.+.|+.... .+++.++. ...++|.+..+|..|.....|.+..
T Consensus 3 ~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~in--P~g~vPvL~~~g~~l~ES~aI~eYL 79 (236)
T TIGR00862 3 IELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLA--PGTHPPFLTYNTEVKTDVNKIEEFL 79 (236)
T ss_pred eEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHC--cCCCCCEEEECCEEeecHHHHHHHH
Confidence 556665521111 369999999999999999999888876532 35677765 2678999988888888777776665
Q ss_pred H
Q 027825 150 E 150 (218)
Q Consensus 150 e 150 (218)
+
T Consensus 80 ~ 80 (236)
T TIGR00862 80 E 80 (236)
T ss_pred H
Confidence 4
No 100
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=95.79 E-value=0.043 Score=43.15 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=39.9
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHH----hhCCCcEEEEECCCCH--H-----HHHHHHHHhCC---CcccccEE--EEC
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTF----EVNRVVTDERDVSLHG--Q-----FLNELKDLLGG---ETVTVPRV--FIK 135 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL----~~~gV~~~erDVs~d~--~-----~r~eLk~~~~g---~~~tvPqV--FI~ 135 (218)
||.|+.+ +||+|+.+.-+| +..++.+..+|++.+. + -..++.+.. + ....+|.+ |-+
T Consensus 27 iv~f~~~------~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~-~i~~~i~~~PT~v~~k~ 99 (122)
T TIGR01295 27 TFFIGRK------TCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRF-GIPTSFMGTPTFVHITD 99 (122)
T ss_pred EEEEECC------CChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHc-CCcccCCCCCEEEEEeC
Confidence 5556666 599999965544 5556889999998653 1 123344443 2 13448887 568
Q ss_pred CEEEecc
Q 027825 136 GRYVGGV 142 (218)
Q Consensus 136 G~~IGG~ 142 (218)
|+.++..
T Consensus 100 Gk~v~~~ 106 (122)
T TIGR01295 100 GKQVSVR 106 (122)
T ss_pred CeEEEEE
Confidence 8766544
No 101
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.45 E-value=0.034 Score=53.43 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=45.5
Q ss_pred CCCcEEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEec
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGG 141 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG 141 (218)
..-.|.+|.|. +||+|-.++++++.. .|..+-+|....++ +.+.. + ..+||.+||+|+.++.
T Consensus 117 ~~~~i~~f~~~------~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~----~~~~~-~-v~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 117 GPLHFETYVSL------TCQNCPDVVQALNQMALLNPNISHTMIDGALFQD----EVEAL-G-IQGVPAVFLNGEEFHN 183 (515)
T ss_pred CCeEEEEEEeC------CCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH----HHHhc-C-CcccCEEEECCcEEEe
Confidence 34568999999 799999999988775 45566666655443 33444 4 7799999999977653
No 102
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.18 E-value=0.046 Score=52.48 Aligned_cols=62 Identities=19% Similarity=0.330 Sum_probs=46.2
Q ss_pred CCCcEEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEec
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGG 141 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG 141 (218)
..-.|.+|.|. +||+|-.++++++.. .|..+-+|....++ +.+.. + ..+||.+||+|+.+..
T Consensus 116 ~~~~i~~fv~~------~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~----~~~~~-~-v~~VP~~~i~~~~~~~ 182 (517)
T PRK15317 116 GDFHFETYVSL------SCHNCPDVVQALNLMAVLNPNITHTMIDGALFQD----EVEAR-N-IMAVPTVFLNGEEFGQ 182 (517)
T ss_pred CCeEEEEEEcC------CCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHh----HHHhc-C-CcccCEEEECCcEEEe
Confidence 34568999999 799999999888765 46677777665544 33444 5 7799999999976543
No 103
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=95.06 E-value=0.11 Score=39.65 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=43.1
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEecchh
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVGGVDE 144 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IGG~de 144 (218)
||.|+++ .|+.|+.+...|+.. ++.|..+|++.+ +|.+.. + ..++|.+ |-+|+.++-..-
T Consensus 28 vv~F~a~------~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~-~-i~~~Pt~~~f~~G~~v~~~~G 94 (113)
T cd02957 28 VVHFYEP------GFPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYL-D-IKVLPTLLVYKNGELIDNIVG 94 (113)
T ss_pred EEEEeCC------CCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhc-C-CCcCCEEEEEECCEEEEEEec
Confidence 4456666 499999988877652 567788887644 555655 5 7788977 678987765544
Q ss_pred hHh
Q 027825 145 LTE 147 (218)
Q Consensus 145 l~~ 147 (218)
...
T Consensus 95 ~~~ 97 (113)
T cd02957 95 FEE 97 (113)
T ss_pred HHH
Confidence 433
No 104
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=94.93 E-value=0.1 Score=37.75 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=40.4
Q ss_pred CcEE-EEEeecCCCCCCChHHHHHHHHHhh----C--CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEe
Q 027825 70 DGVV-IYTTSLRGVRRTYEDCNRVRSTFEV----N--RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVG 140 (218)
Q Consensus 70 ~kVV-lYttsl~giR~tc~~C~~vr~iL~~----~--gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IG 140 (218)
..++ .|+++ .|+.|+.++..|.+ + +|.|-.+|.+.+.+ +.+.. + ...+|.+ |-+|+.+.
T Consensus 18 ~~vvv~f~~~------~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~-~-v~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 18 KPVVVYFYAP------WCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE----LCKKY-G-VKSVPTIIFFKNGKEVK 85 (103)
T ss_dssp SEEEEEEEST------TSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH----HHHHT-T-CSSSSEEEEEETTEEEE
T ss_pred CCEEEEEeCC------CCCccccccceecccccccccccccchhhhhccch----hhhcc-C-CCCCCEEEEEECCcEEE
Confidence 4444 55555 59999999877743 3 48889999987744 44444 5 7888988 45776654
No 105
>PTZ00051 thioredoxin; Provisional
Probab=94.93 E-value=0.16 Score=36.88 Aligned_cols=57 Identities=19% Similarity=0.341 Sum_probs=38.4
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhh-----CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEe
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEV-----NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVG 140 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~-----~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IG 140 (218)
++.|+++ +|+.|+.+...|+. .++.|..+|++.... +.+.. + ...+|.+ |-+|+.++
T Consensus 22 li~f~~~------~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~----~~~~~-~-v~~~Pt~~~~~~g~~~~ 85 (98)
T PTZ00051 22 IVDFYAE------WCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSE----VAEKE-N-ITSMPTFKVFKNGSVVD 85 (98)
T ss_pred EEEEECC------CCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHH----HHHHC-C-CceeeEEEEEeCCeEEE
Confidence 4555666 59999999887766 357788888876543 33334 4 6778876 45775554
No 106
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.79 E-value=0.072 Score=51.78 Aligned_cols=58 Identities=24% Similarity=0.292 Sum_probs=44.6
Q ss_pred CCcEEEEEeecCCCCCCChHHHHHHHHHhh----C-CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEE
Q 027825 69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEV----N-RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRY 138 (218)
Q Consensus 69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~----~-gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~ 138 (218)
.-.|.+|.++ +|++|-++.+.++. . +|..+.+|+...++ +.+.. + ..++|.+||||+.
T Consensus 477 ~~~i~v~~~~------~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~----~~~~~-~-v~~vP~~~i~~~~ 539 (555)
T TIGR03143 477 PVNIKIGVSL------SCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD----LKDEY-G-IMSVPAIVVDDQQ 539 (555)
T ss_pred CeEEEEEECC------CCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH----HHHhC-C-ceecCEEEECCEE
Confidence 3468888888 69999988875544 4 79999999987643 44444 5 8899999999964
No 107
>PRK15113 glutathione S-transferase; Provisional
Probab=94.74 E-value=0.14 Score=43.17 Aligned_cols=72 Identities=10% Similarity=0.068 Sum_probs=52.9
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCC--CHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSL--HGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL 148 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~--d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l 148 (218)
.++||.... .++++|.+|+-+|..+||+|+.+.|.. .....+++.++. ....||.+.++|..|--...|.+.
T Consensus 5 ~~~Ly~~~~----~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~VP~L~~~~~~l~ES~aI~~Y 78 (214)
T PRK15113 5 AITLYSDAH----FFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYS--LTRRVPTLQHDDFELSESSAIAEY 78 (214)
T ss_pred eEEEEeCCC----CCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcC--CCCCCCEEEECCEEEecHHHHHHH
Confidence 478998651 037999999999999999999887764 223446777765 378999999988766655555443
No 108
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=94.71 E-value=0.21 Score=35.81 Aligned_cols=66 Identities=18% Similarity=0.096 Sum_probs=45.2
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHH--HhCCCcccccEEEECCEEEecchhhH
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKD--LLGGETVTVPRVFIKGRYVGGVDELT 146 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~--~~~g~~~tvPqVFI~G~~IGG~del~ 146 (218)
.+||.... .+.|.+++-+|+..|++|+.+.++...++.+ +.. .. ....+|.+.+||..|...-.+.
T Consensus 2 ~~Ly~~~~------~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~-~~~~~~~--~~g~vP~L~~~g~~l~ES~AI~ 69 (79)
T cd03077 2 PVLHYFNG------RGRMESIRWLLAAAGVEFEEKFIESAEDLEK-LKKDGSL--MFQQVPMVEIDGMKLVQTRAIL 69 (79)
T ss_pred CEEEEeCC------CChHHHHHHHHHHcCCCcEEEEeccHHHHHh-hccccCC--CCCCCCEEEECCEEEeeHHHHH
Confidence 46888773 4688899999999999999888865443321 211 11 1458999988887665555443
No 109
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=94.69 E-value=0.2 Score=38.52 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=40.3
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhh-----CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEe
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEV-----NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVG 140 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~-----~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IG 140 (218)
||.|+++ .|+.|+.+...|+. .++.|..+|++...+ +.+.. + ..++|.+ |-+|+.++
T Consensus 26 vV~f~a~------~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~----l~~~~-~-v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 26 VCHFYHP------EFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF----LVEKL-N-IKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEECC------CCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH----HHHHC-C-CccCCEEEEEECCEEEE
Confidence 4455556 49999998887755 257899999988764 44444 4 7778877 66887654
No 110
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=94.61 E-value=0.06 Score=44.63 Aligned_cols=68 Identities=21% Similarity=0.142 Sum_probs=50.7
Q ss_pred EEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC---HHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825 74 IYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH---GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN 149 (218)
Q Consensus 74 lYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d---~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~ 149 (218)
||+.. +++.+.+++-+|...||+|+.+.++.. .....++++.. ...++|.+.++|..|-....|....
T Consensus 2 Ly~~~------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~ES~aI~~yl 72 (210)
T TIGR01262 2 LYSYW------RSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALN--PQGLVPTLDIDGEVLTQSLAIIEYL 72 (210)
T ss_pred cccCC------CCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcC--CCCcCCEEEECCEEeecHHHHHHHH
Confidence 56555 478999999999999999999888741 22235566664 3789999999998877766665543
No 111
>PHA02278 thioredoxin-like protein
Probab=94.57 E-value=0.18 Score=38.63 Aligned_cols=63 Identities=13% Similarity=0.248 Sum_probs=40.8
Q ss_pred CCcEEE-EEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEE
Q 027825 69 SDGVVI-YTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYV 139 (218)
Q Consensus 69 ~~kVVl-Yttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~I 139 (218)
.+.|+| |+++ .|+.|+.+..+|+.. .+.+..+||+.+..-..++.+.. + ..++|.+ |-+|+.+
T Consensus 14 ~~~vvV~F~A~------WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~-~-I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 14 KKDVIVMITQD------NCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLF-D-IMSTPVLIGYKDGQLV 85 (103)
T ss_pred CCcEEEEEECC------CCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHC-C-CccccEEEEEECCEEE
Confidence 344554 5555 599999888776553 25688888886531133455555 4 7788887 5588765
No 112
>PRK09381 trxA thioredoxin; Provisional
Probab=94.56 E-value=0.35 Score=36.06 Aligned_cols=59 Identities=8% Similarity=0.215 Sum_probs=39.8
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhh----C--CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE--CCEEEecc
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEV----N--RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI--KGRYVGGV 142 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~----~--gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI--~G~~IGG~ 142 (218)
|+.|+++ .|+.|..+...|+. + ++.+-.+|++.+... .... + ..++|.+++ +|+.++-.
T Consensus 25 vv~f~~~------~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~-~-v~~~Pt~~~~~~G~~~~~~ 91 (109)
T PRK09381 25 LVDFWAE------WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKY-G-IRGIPTLLLFKNGEVAATK 91 (109)
T ss_pred EEEEECC------CCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH----HHhC-C-CCcCCEEEEEeCCeEEEEe
Confidence 5555566 59999998766653 2 366788888876544 3344 5 788998854 88776533
No 113
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=94.51 E-value=0.33 Score=34.78 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHhh----C--CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE--CCEEE
Q 027825 85 TYEDCNRVRSTFEV----N--RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI--KGRYV 139 (218)
Q Consensus 85 tc~~C~~vr~iL~~----~--gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI--~G~~I 139 (218)
.|+.|..+...|+. + .+.|-.+|++.+.++ .+.. + ...+|.+++ +|+.+
T Consensus 25 ~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~-~-v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 25 WCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDI----AAKY-G-IRSIPTLLLFKNGKEV 81 (101)
T ss_pred CCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHH----HHHc-C-CCcCCEEEEEeCCcEe
Confidence 59999998776654 2 377888898877544 3344 5 788998865 66544
No 114
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.21 Score=44.05 Aligned_cols=73 Identities=14% Similarity=0.018 Sum_probs=54.4
Q ss_pred CCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825 69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL 148 (218)
Q Consensus 69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l 148 (218)
++.|.||.+- .|||.++++-.|+.+||+|+.+.++... --+.|.+.. --...+|.+..+|+.|.-.-.+.+.
T Consensus 7 ~~~vrL~~~w------~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~n-p~hkKVPvL~Hn~k~i~ESliiveY 78 (231)
T KOG0406|consen 7 DGTVKLLGMW------FSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKN-PVHKKVPVLEHNGKPICESLIIVEY 78 (231)
T ss_pred CCeEEEEEee------cChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhc-cccccCCEEEECCceehhhHHHHHH
Confidence 3679999888 6999999999999999999888876532 113344443 2377899999999987755554444
Q ss_pred H
Q 027825 149 N 149 (218)
Q Consensus 149 ~ 149 (218)
.
T Consensus 79 i 79 (231)
T KOG0406|consen 79 I 79 (231)
T ss_pred H
Confidence 3
No 115
>PLN02473 glutathione S-transferase
Probab=94.24 E-value=0.16 Score=42.42 Aligned_cols=70 Identities=16% Similarity=-0.008 Sum_probs=51.6
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC--HHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN 149 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d--~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~ 149 (218)
+.||... +.+++.+|+-+|..+||+|+.+.+... .....++.++. ....+|.+..+|..|.....|.+..
T Consensus 3 ~kLy~~~------~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~ES~aI~~YL 74 (214)
T PLN02473 3 VKVYGQI------KAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQ--PFGQVPAIEDGDLKLFESRAIARYY 74 (214)
T ss_pred eEEecCC------CCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhC--CCCCCCeEEECCEEEEehHHHHHHH
Confidence 5688776 478999999999999999988766432 23344555554 3779999999998887776666543
No 116
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=94.16 E-value=0.069 Score=37.71 Aligned_cols=40 Identities=30% Similarity=0.691 Sum_probs=25.8
Q ss_pred cceeeCCCCCCCceeeecC----C---ceeccCCcCcCCccc----CCCCC
Q 027825 178 ARFVPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLVH----CPACS 217 (218)
Q Consensus 178 ~rfv~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~~----C~~C~ 217 (218)
.....|+.|+|+-.++... . ....|+.|+=.|.+. |+.|.
T Consensus 13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~ 63 (66)
T PF00684_consen 13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCK 63 (66)
T ss_dssp TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSST
T ss_pred CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCC
Confidence 3447899999997776543 1 278899999998875 88774
No 117
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=94.11 E-value=0.31 Score=36.28 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=35.8
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhh-------C--CCcEEEEECCCCHH----------------HHHHHHHHhCCC
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEV-------N--RVVTDERDVSLHGQ----------------FLNELKDLLGGE 125 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~-------~--gV~~~erDVs~d~~----------------~r~eLk~~~~g~ 125 (218)
.|++|++. .|++|+++...+.. . ++.+...++..+.. ...+|.... |
T Consensus 8 ~v~~F~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~- 79 (112)
T PF13098_consen 8 IVVVFTDP------WCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRY-G- 79 (112)
T ss_dssp EEEEEE-T------T-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHT-T-
T ss_pred EEEEEECC------CCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHc-C-
Confidence 35555555 69999988766552 1 34566666654432 224566666 6
Q ss_pred cccccEEE-EC--CE---EEecchh
Q 027825 126 TVTVPRVF-IK--GR---YVGGVDE 144 (218)
Q Consensus 126 ~~tvPqVF-I~--G~---~IGG~de 144 (218)
...+|.++ +| |+ .+-|+-.
T Consensus 80 v~gtPt~~~~d~~G~~v~~~~G~~~ 104 (112)
T PF13098_consen 80 VNGTPTIVFLDKDGKIVYRIPGYLS 104 (112)
T ss_dssp --SSSEEEECTTTSCEEEEEESS--
T ss_pred CCccCEEEEEcCCCCEEEEecCCCC
Confidence 77889885 44 65 4556543
No 118
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=94.10 E-value=0.29 Score=38.54 Aligned_cols=57 Identities=12% Similarity=0.199 Sum_probs=40.7
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhC-----C-CcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEe
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN-----R-VVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVG 140 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~-----g-V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IG 140 (218)
||-|+.+| |+.|+.+.-+|++. + +.|-.+|++.+++ |.+.. + ..++|.+ |-+|+.++
T Consensus 18 VV~F~A~W------CgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~----la~~~-~-V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 18 VIRFGRDW------DPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD----FNKMY-E-LYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEECCC------ChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH----HHHHc-C-CCCCCEEEEEECCEEEE
Confidence 44466665 99999998877543 2 5688999998864 44555 5 7788987 56887764
No 119
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=93.94 E-value=0.15 Score=45.31 Aligned_cols=62 Identities=23% Similarity=0.222 Sum_probs=47.0
Q ss_pred CChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825 85 TYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN 149 (218)
Q Consensus 85 tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~ 149 (218)
.||+|.+++-+|+.+|++|+.+.|+... .-+++.++. ....+|.+..+|..|.....|.+..
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iN--P~GkVPvL~~d~~~L~ES~aI~~YL 133 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKIS--PEGKVPVVKLDEKWVADSDVITQAL 133 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhC--CCCCCCEEEECCEEEecHHHHHHHH
Confidence 5999999999999999999987776532 234566665 3679999999998776666655443
No 120
>PLN02378 glutathione S-transferase DHAR1
Probab=93.38 E-value=0.22 Score=42.07 Aligned_cols=62 Identities=16% Similarity=0.132 Sum_probs=45.8
Q ss_pred CCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825 84 RTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL 148 (218)
Q Consensus 84 ~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l 148 (218)
.+|++|.+|+-+|+.+|++|+.+.|+... ...++.+.. ...++|.+..+|..|.-...|.+.
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~l~in--P~G~VPvL~~~~~~l~ES~aI~~Y 79 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSD-KPQWFLDIS--PQGKVPVLKIDDKWVTDSDVIVGI 79 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCccc-CCHHHHHhC--CCCCCCEEEECCEEecCHHHHHHH
Confidence 36999999999999999999877776532 223566665 378999998888766555554443
No 121
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.074 Score=49.88 Aligned_cols=49 Identities=33% Similarity=0.741 Sum_probs=40.6
Q ss_pred CcCCCCCCCc------ceeeCCCCCCCceeeecC--C---ceeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGA------RFVPCFDCGGSCKVVLAN--G---DKQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~------rfv~C~~C~Gs~k~~~~~--~---~~~rC~~CnenGl~---~C~~C~ 217 (218)
...|+.|.|. .-..|+.|||+=.+.... + ....|+.||=.|-+ +|+.|.
T Consensus 142 ~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~ 204 (371)
T COG0484 142 SVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCK 204 (371)
T ss_pred eeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCC
Confidence 5689999988 778999999997765544 3 37899999999987 599995
No 122
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=93.19 E-value=0.67 Score=34.67 Aligned_cols=59 Identities=15% Similarity=0.094 Sum_probs=39.0
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEE
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYV 139 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~I 139 (218)
||.|+++ +|+.|+.....|+.. .+.|-.+|++.+... .++.+.. + ...+|.+ |-+|+.+
T Consensus 19 vv~F~a~------wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~-~~l~~~~-~-V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALK------HSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST-MELCRRE-K-IIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECC------CCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH-HHHHHHc-C-CCcCCEEEEEeCCeEE
Confidence 4445555 499999888777652 577888888766433 3454555 5 7788876 4477654
No 123
>PRK10767 chaperone protein DnaJ; Provisional
Probab=93.04 E-value=0.1 Score=48.46 Aligned_cols=49 Identities=29% Similarity=0.742 Sum_probs=36.9
Q ss_pred CcCCCCCCCcce------eeCCCCCCCceeeecCCc---eeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGARF------VPCFDCGGSCKVVLANGD---KQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~~---~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+. ..|..|+|+-.++...+. ...|+.|+=.|.+ +|+.|.
T Consensus 142 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 202 (371)
T PRK10767 142 LVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCH 202 (371)
T ss_pred cccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCC
Confidence 557888888764 579999999776654432 5689999988865 788885
No 124
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=93.02 E-value=0.8 Score=39.90 Aligned_cols=34 Identities=9% Similarity=0.190 Sum_probs=24.8
Q ss_pred CCCCcEEEEEeecCCCCCCChHHHHHHHHHhhC---CCcEEEE
Q 027825 67 GGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN---RVVTDER 106 (218)
Q Consensus 67 ~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~---gV~~~er 106 (218)
.+...|++||-. .||||++....|..+ +|.+..+
T Consensus 106 ~~k~~I~vFtDp------~CpyCkkl~~~l~~~~~~~v~v~~~ 142 (232)
T PRK10877 106 QEKHVITVFTDI------TCGYCHKLHEQMKDYNALGITVRYL 142 (232)
T ss_pred CCCEEEEEEECC------CChHHHHHHHHHHHHhcCCeEEEEE
Confidence 445567788777 799999998888774 4665544
No 125
>PRK14300 chaperone protein DnaJ; Provisional
Probab=92.95 E-value=0.1 Score=48.58 Aligned_cols=49 Identities=29% Similarity=0.745 Sum_probs=38.0
Q ss_pred CcCCCCCCCcc------eeeCCCCCCCceeeecCCc---eeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGAR------FVPCFDCGGSCKVVLANGD---KQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~~~---~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+ ...|+.|+|+-+++...+. ...|+.|+-.|-+ +|+.|.
T Consensus 145 ~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 205 (372)
T PRK14300 145 EVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCH 205 (372)
T ss_pred ccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCC
Confidence 45788888865 5789999999877654442 5689999999955 788885
No 126
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=92.88 E-value=0.39 Score=36.82 Aligned_cols=57 Identities=12% Similarity=0.264 Sum_probs=34.5
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHh---------hCCCcEEEEECCCCHHH---------HHHHHHHhCCCcccccEE-
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFE---------VNRVVTDERDVSLHGQF---------LNELKDLLGGETVTVPRV- 132 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~---------~~gV~~~erDVs~d~~~---------r~eLk~~~~g~~~tvPqV- 132 (218)
+|.|+++ +|++|++....+. ..++.+..+|++.+... ..+|.... + ...+|.+
T Consensus 18 lv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~-~-v~~~Pt~~ 89 (125)
T cd02951 18 LLLFSQP------GCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY-R-VRFTPTVI 89 (125)
T ss_pred EEEEeCC------CCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc-C-CccccEEE
Confidence 4555555 5999998775432 12455667777654211 24565666 5 7889996
Q ss_pred EECC
Q 027825 133 FIKG 136 (218)
Q Consensus 133 FI~G 136 (218)
|+++
T Consensus 90 ~~~~ 93 (125)
T cd02951 90 FLDP 93 (125)
T ss_pred EEcC
Confidence 5554
No 127
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=92.86 E-value=0.56 Score=36.79 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=43.7
Q ss_pred CCcEEEEEeecCCCCCCChHHHHHHHHHhhC-----C-CcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEe
Q 027825 69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----R-VVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVG 140 (218)
Q Consensus 69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~~-----g-V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IG 140 (218)
...|+.|+.+|- .||.|..+.-+|++. + +.|-.+|++.++ +|.+.. + ..++|.+ |-+|+.++
T Consensus 28 ~~~v~~f~~~~~----~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----~la~~f-~-V~sIPTli~fkdGk~v~ 97 (111)
T cd02965 28 GDLVLLLAGDPV----RFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----ALAARF-G-VLRTPALLFFRDGRYVG 97 (111)
T ss_pred CCEEEEecCCcc----cCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----HHHHHc-C-CCcCCEEEEEECCEEEE
Confidence 344555666641 299999999877653 2 446688888775 555555 5 8888987 66998876
Q ss_pred cc
Q 027825 141 GV 142 (218)
Q Consensus 141 G~ 142 (218)
..
T Consensus 98 ~~ 99 (111)
T cd02965 98 VL 99 (111)
T ss_pred EE
Confidence 54
No 128
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=92.84 E-value=0.66 Score=33.15 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=45.6
Q ss_pred CCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHH
Q 027825 81 GVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNE 150 (218)
Q Consensus 81 giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e 150 (218)
|+-...++|-++..+|+-.+++|+.+... +. . . +....+|.|..+|+.|++++.+.+..+
T Consensus 11 g~ps~sp~clk~~~~Lr~~~~~~~v~~~~-n~-------~-~-sp~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 11 GLPSVDPECLAVLAYLKFAGAPLKVVPSN-NP-------W-R-SPTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred CCCcCCHHHHHHHHHHHcCCCCEEEEecC-CC-------C-C-CCCCccCEEEECCEEecChHHHHHHHH
Confidence 45556799999999999999999665333 21 1 1 225679999999999999998877643
No 129
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=92.78 E-value=0.75 Score=33.18 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=37.2
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhh------CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEE
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEV------NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYV 139 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~------~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~I 139 (218)
++.|+++ .|+.|+++...|++ ..+.+-.+|++...+ +.+.. + ...+|.+ |.+|+.+
T Consensus 18 ~v~f~~~------~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~----~~~~~-~-i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAP------WAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE----ISEKF-E-ITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECC------CCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH----HHHhc-C-CccccEEEEEECCEEE
Confidence 4556666 59999999887765 246677777765543 44445 5 7778966 5677643
No 130
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=92.55 E-value=0.068 Score=45.82 Aligned_cols=88 Identities=19% Similarity=0.303 Sum_probs=62.9
Q ss_pred cccEEEECCEEEecchhhHhHHHhCcHHHHHhhhhhhcccCCcCCCCCCCcceeeCCCCCCCceeeec-CCceeccCCcC
Q 027825 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLA-NGDKQRCGVCN 206 (218)
Q Consensus 128 tvPqVFI~G~~IGG~del~~l~e~G~L~~lL~~~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~-~~~~~rC~~Cn 206 (218)
..|.-+++.-++-...++.++ .+|.|.+.|+.+-...-..-..|+-|-+.+| .|..|+.+.-+|-= .....+|+.|+
T Consensus 102 ~~~~hl~~~~~~YSl~DL~~v-~~G~L~~~L~~l~~~~~~HV~~C~lC~~kGf-iCe~C~~~~~IfPF~~~~~~~C~~C~ 179 (202)
T PF13901_consen 102 QPRDHLLEDPHLYSLADLVQV-KSGQLLPQLEKLVQFAEKHVYSCELCQQKGF-ICEICNSDDIIFPFQIDTTVRCPKCK 179 (202)
T ss_pred cchhhhhhCCceEcHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhHHHHhCCC-CCccCCCCCCCCCCCCCCeeeCCcCc
Confidence 456667888888888999887 5899999988765443223448999999998 89999998444322 23589999987
Q ss_pred cCC------cccCCCCC
Q 027825 207 ENG------LVHCPACS 217 (218)
Q Consensus 207 enG------l~~C~~C~ 217 (218)
--= ...||.|.
T Consensus 180 ~v~H~~C~~~~~CpkC~ 196 (202)
T PF13901_consen 180 SVFHKSCFRKKSCPKCA 196 (202)
T ss_pred cccchhhcCCCCCCCcH
Confidence 421 15577773
No 131
>PRK10996 thioredoxin 2; Provisional
Probab=92.49 E-value=0.48 Score=37.70 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=37.6
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE--ECCEEE
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF--IKGRYV 139 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF--I~G~~I 139 (218)
++.|+++ +|+.|+.+...|... ++.+-.+|++.+.++ .+.. + ...+|.++ -+|+.+
T Consensus 56 vv~F~a~------wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l----~~~~-~-V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAP------WCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAEREL----SARF-R-IRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECC------CCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHH----HHhc-C-CCccCEEEEEECCEEE
Confidence 5556666 499999887666442 466777888877554 4444 4 77788774 477755
No 132
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=92.31 E-value=0.79 Score=33.73 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=36.1
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhh----C--CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECC
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEV----N--RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKG 136 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~----~--gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G 136 (218)
-+|.|+++| |+.|+.+...++. + .+.+-.+|.+.+.+ +.+.. + ...+|.+ |.+|
T Consensus 22 v~v~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~-~-i~~~Pt~~~~~~g 83 (104)
T cd03004 22 WLVDFYAPW------CGPCQALLPELRKAARALKGKVKVGSVDCQKYES----LCQQA-N-IRAYPTIRLYPGN 83 (104)
T ss_pred EEEEEECCC------CHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH----HHHHc-C-CCcccEEEEEcCC
Confidence 366677774 9999988766643 2 36678888887654 44444 5 7788887 4455
No 133
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=92.29 E-value=0.63 Score=39.60 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=41.1
Q ss_pred CCcEEEEEe---ecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE--CCEE
Q 027825 69 SDGVVIYTT---SLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI--KGRY 138 (218)
Q Consensus 69 ~~kVVlYtt---sl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI--~G~~ 138 (218)
.-.|++|++ +| |+.|+.+..+|+.. ++.+..+|++.+. -.++.+.. + ...+|.+.+ +|+.
T Consensus 20 ~~~i~~f~~~~a~w------C~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~--~~~l~~~~-~-V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 20 PVEIVVFTDNDKEG------CQYCKETEQLLEELSEVSPKLKLEIYDFDTPE--DKEEAEKY-G-VERVPTTIILEEGKD 89 (215)
T ss_pred CeEEEEEcCCCCCC------CCchHHHHHHHHHHHhhCCCceEEEEecCCcc--cHHHHHHc-C-CCccCEEEEEeCCee
Confidence 445889988 75 99999999888665 3455667776432 23455555 5 888898855 6544
Q ss_pred E
Q 027825 139 V 139 (218)
Q Consensus 139 I 139 (218)
+
T Consensus 90 ~ 90 (215)
T TIGR02187 90 G 90 (215)
T ss_pred e
Confidence 4
No 134
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=92.23 E-value=0.58 Score=34.03 Aligned_cols=54 Identities=11% Similarity=0.193 Sum_probs=41.6
Q ss_pred hHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825 87 EDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN 149 (218)
Q Consensus 87 ~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~ 149 (218)
+.|.++..+|+..|++|+.+++.... .. .....+|.|-+||+.|+....+..+.
T Consensus 18 ~~~~kv~~~L~elglpye~~~~~~~~--------~~-~P~GkVP~L~~dg~vI~eS~aIl~yL 71 (74)
T cd03079 18 ASCLAVQTFLKMCNLPFNVRCRANAE--------FM-SPSGKVPFIRVGNQIVSEFGPIVQFV 71 (74)
T ss_pred CCHHHHHHHHHHcCCCcEEEecCCcc--------cc-CCCCcccEEEECCEEEeCHHHHHHHH
Confidence 58999999999999999988754311 11 22457999999999999888876553
No 135
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=91.87 E-value=1.1 Score=37.36 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=26.2
Q ss_pred CCCCcEEEEEeecCCCCCCChHHHHHHHHHh--hCCCcEEEEEC
Q 027825 67 GGSDGVVIYTTSLRGVRRTYEDCNRVRSTFE--VNRVVTDERDV 108 (218)
Q Consensus 67 ~~~~kVVlYttsl~giR~tc~~C~~vr~iL~--~~gV~~~erDV 108 (218)
.+...|++|+-. .||+|+++...|. ..+|.+..+-+
T Consensus 76 ~~~~~i~~f~D~------~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 76 NGKRVVYVFTDP------DCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred CCCEEEEEEECC------CCccHHHHHHHHhhccCceEEEEEEc
Confidence 345567777776 6999999999887 45666666554
No 136
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=91.83 E-value=0.7 Score=32.57 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=34.6
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhh----C----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEV----N----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~----~----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI 134 (218)
.-+++|+++ +|+.|..+...|+. . ++.+..+|.+.+. ++.+.. + ...+|.+++
T Consensus 17 ~~~v~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~-~-i~~~Pt~~~ 77 (101)
T cd02961 17 DVLVEFYAP------WCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN----DLCSEY-G-VRGYPTIKL 77 (101)
T ss_pred cEEEEEECC------CCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH----HHHHhC-C-CCCCCEEEE
Confidence 346666666 59999998876644 3 3556667766543 344445 5 788998843
No 137
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.70 E-value=0.15 Score=47.08 Aligned_cols=49 Identities=27% Similarity=0.639 Sum_probs=31.1
Q ss_pred CcCCCCCCCcceeeCCCCCCCceeee----------------c------------CCceeccCCcCcCCcccCCCCC
Q 027825 169 RQACEGCGGARFVPCFDCGGSCKVVL----------------A------------NGDKQRCGVCNENGLVHCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rfv~C~~C~Gs~k~~~----------------~------------~~~~~rC~~CnenGl~~C~~C~ 217 (218)
...|.+|-|.+-+.|+.||||---+. . ..+.++|+.|.--|++.|..|.
T Consensus 187 v~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~ 263 (406)
T KOG2813|consen 187 VTFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCS 263 (406)
T ss_pred hhhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCccccccc
Confidence 44688888888888888887752110 0 1136667777777777777764
No 138
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=91.62 E-value=0.7 Score=34.48 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=37.9
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhC------------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE--ECC
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN------------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF--IKG 136 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~------------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF--I~G 136 (218)
-+|.|+++| |+.|++....++.. .+.|-.+|.+.+. ++.+.. + ..++|.++ -+|
T Consensus 21 vlv~F~a~w------C~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~----~l~~~~-~-v~~~Ptl~~~~~g 88 (108)
T cd02996 21 VLVNFYADW------CRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES----DIADRY-R-INKYPTLKLFRNG 88 (108)
T ss_pred EEEEEECCC------CHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH----HHHHhC-C-CCcCCEEEEEeCC
Confidence 356677775 99999998777421 3667788887764 345555 5 88899884 455
Q ss_pred E
Q 027825 137 R 137 (218)
Q Consensus 137 ~ 137 (218)
+
T Consensus 89 ~ 89 (108)
T cd02996 89 M 89 (108)
T ss_pred c
Confidence 4
No 139
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=91.50 E-value=0.79 Score=33.14 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=37.2
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE--ECCEEE
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF--IKGRYV 139 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF--I~G~~I 139 (218)
++.|+++ .|+.|+.+...|... .+.+-.+|++.+.+ |.+.. + ...+|.++ -+|+.+
T Consensus 16 lv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~-~-i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 16 VVDFWAP------RSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ----IAQQF-G-VQALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEECC------CChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH----HHHHc-C-CCCCCEEEEEeCCEEe
Confidence 4555566 499999997777542 35567788877654 44445 5 77899885 466544
No 140
>PRK14284 chaperone protein DnaJ; Provisional
Probab=91.47 E-value=0.22 Score=46.63 Aligned_cols=49 Identities=33% Similarity=0.762 Sum_probs=35.3
Q ss_pred CcCCCCCCCcce------eeCCCCCCCceeeecCCc---eeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGARF------VPCFDCGGSCKVVLANGD---KQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~~---~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+. ..|+.|+|+-.++...+. ...|+.|+=.|-+ +|+.|.
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 218 (391)
T PRK14284 158 YKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCR 218 (391)
T ss_pred eccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCC
Confidence 557888877664 569999999766543332 5789999888854 588884
No 141
>PLN02395 glutathione S-transferase
Probab=91.35 E-value=0.63 Score=38.70 Aligned_cols=70 Identities=14% Similarity=0.070 Sum_probs=50.5
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC--HHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN 149 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d--~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~ 149 (218)
+.||... ...+.+++-+|..+|++|+.+.|+.. .....++.+.. ....+|.+..+|..|-....|.+..
T Consensus 3 ~~ly~~~-------~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~~~~l~ES~aI~~YL 73 (215)
T PLN02395 3 LKVYGPA-------FASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQ--PFGVVPVIVDGDYKIFESRAIMRYY 73 (215)
T ss_pred EEEEcCC-------cCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhC--CCCCCCEEEECCEEEEcHHHHHHHH
Confidence 6788744 34579999999999999998887642 12235677765 3789999998887777666665544
Q ss_pred H
Q 027825 150 E 150 (218)
Q Consensus 150 e 150 (218)
+
T Consensus 74 ~ 74 (215)
T PLN02395 74 A 74 (215)
T ss_pred H
Confidence 3
No 142
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=91.27 E-value=0.85 Score=33.36 Aligned_cols=52 Identities=12% Similarity=0.251 Sum_probs=36.7
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhC-------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN-------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~-------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI 134 (218)
-+|.|+++| |+.|+.+...|+.. +|.+-.+|++.+.. +.... + ..++|.+++
T Consensus 19 ~lv~f~a~w------C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~----~~~~~-~-i~~~Pt~~~ 77 (101)
T cd02994 19 WMIEFYAPW------CPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG----LSGRF-F-VTALPTIYH 77 (101)
T ss_pred EEEEEECCC------CHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh----HHHHc-C-CcccCEEEE
Confidence 577777885 99999888776432 46678888877654 33344 4 778888864
No 143
>PRK14285 chaperone protein DnaJ; Provisional
Probab=91.27 E-value=0.24 Score=46.01 Aligned_cols=49 Identities=33% Similarity=0.744 Sum_probs=35.9
Q ss_pred CcCCCCCCCcce------eeCCCCCCCceeeecCC---ceeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGARF------VPCFDCGGSCKVVLANG---DKQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~---~~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+. ..|..|+|+-.++...+ ....|+.|+=.|-+ +|+.|.
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 206 (365)
T PRK14285 146 NMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCK 206 (365)
T ss_pred cccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCC
Confidence 457888888763 57999999977655333 25689999888854 688885
No 144
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=91.07 E-value=0.48 Score=34.12 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=35.3
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhhC--------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVN--------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~--------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI 134 (218)
--|++|+++| |+.|+.....|+.. ++.+..+|...+.. +.+.. + ...+|.+|+
T Consensus 15 ~~~i~f~~~~------C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~-~-i~~~P~~~~ 75 (102)
T TIGR01126 15 DVLVEFYAPW------CGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD----LASRF-G-VSGFPTIKF 75 (102)
T ss_pred cEEEEEECCC------CHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH----HHHhC-C-CCcCCEEEE
Confidence 3477778884 99999866555331 26677778776644 44445 5 788998843
No 145
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=90.98 E-value=0.88 Score=38.12 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=41.1
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH--HHHHHHHHHhCCCcccccEEEE
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG--QFLNELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~--~~r~eLk~~~~g~~~tvPqVFI 134 (218)
+.||... .+.+.+|+-+|+.+||+|+.++|+... ....+++++. ....+|.+..
T Consensus 2 ~~Ly~~~-------~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iN--P~gkVP~L~~ 57 (215)
T PRK13972 2 IDLYFAP-------TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRIS--PNNKIPAIVD 57 (215)
T ss_pred eEEEECC-------CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhC--cCCCCCEEEe
Confidence 4678765 478999999999999999988876532 2345677765 3779999987
No 146
>PRK10357 putative glutathione S-transferase; Provisional
Probab=90.77 E-value=0.53 Score=38.84 Aligned_cols=64 Identities=8% Similarity=-0.053 Sum_probs=45.1
Q ss_pred EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE-CCEEEecchhh
Q 027825 73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI-KGRYVGGVDEL 145 (218)
Q Consensus 73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI-~G~~IGG~del 145 (218)
.||++. .++++.+|+-+|+.+||+|+.++++.... ..++.+.. ....+|.+.. +|..+-....|
T Consensus 2 ~Ly~~~------~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~n--P~g~vP~L~~~~g~~l~eS~aI 66 (202)
T PRK10357 2 KLIGSY------TSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYN--PLGKVPALVTEEGECWFDSPII 66 (202)
T ss_pred eeecCC------CCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcC--CccCCCeEEeCCCCeeecHHHH
Confidence 577777 58999999999999999999988865321 13444544 3788999985 56544444333
No 147
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=90.75 E-value=0.94 Score=33.28 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=36.5
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCE
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGR 137 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~ 137 (218)
-+|.|+++| |+.|+.+...++.. .+.+-.+|++.+.. +.+.. + ...+|.+ |-+|+
T Consensus 21 ~~v~f~a~w------C~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~----~~~~~-~-v~~~Pt~~~~~~g~ 83 (101)
T cd03003 21 WFVNFYSPR------CSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM----LCRSQ-G-VNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEEECCC------ChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH----HHHHc-C-CCccCEEEEEcCCC
Confidence 356667774 99999988776443 25577888877654 33344 4 7788988 44564
No 148
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=90.70 E-value=1.5 Score=34.67 Aligned_cols=62 Identities=10% Similarity=0.071 Sum_probs=44.6
Q ss_pred CCCcEEEEEeecCCCCCCCh--HHH----------HHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--E
Q 027825 68 GSDGVVIYTTSLRGVRRTYE--DCN----------RVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--F 133 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~--~C~----------~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--F 133 (218)
.+..||+|+..| .|. .|+ .+.++|+..+|.+-.+|++.+.+ |.+.. | ..++|.+ |
T Consensus 26 ~~~~vvv~f~a~-----wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~----La~~~-~-I~~iPTl~lf 94 (120)
T cd03065 26 YDVLCLLYHEPV-----ESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK----VAKKL-G-LDEEDSIYVF 94 (120)
T ss_pred CCceEEEEECCC-----cCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH----HHHHc-C-CccccEEEEE
Confidence 455788999987 353 486 34456667789999999998855 44455 5 7788887 7
Q ss_pred ECCEEEe
Q 027825 134 IKGRYVG 140 (218)
Q Consensus 134 I~G~~IG 140 (218)
.+|+.+.
T Consensus 95 k~G~~v~ 101 (120)
T cd03065 95 KDDEVIE 101 (120)
T ss_pred ECCEEEE
Confidence 8998654
No 149
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.66 E-value=0.26 Score=40.75 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=47.0
Q ss_pred ccCCCCCCCCCCCcEEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccE
Q 027825 58 SDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPR 131 (218)
Q Consensus 58 ~~~~~~~pp~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPq 131 (218)
++|+.+..-....=||-|+..| |.-|+.+.-+|+++ .+.+-.+|++.+.++ .... + ...+|.
T Consensus 51 ~~~~~~Vi~S~~PVlVdF~A~W------CgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~el----a~~Y-~-I~avPt 118 (150)
T KOG0910|consen 51 SEFDDKVINSDVPVLVDFHAEW------CGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPEL----AEDY-E-ISAVPT 118 (150)
T ss_pred HHHHHHHHccCCCEEEEEecCc------CccHhHhhHHHHHHHHhhcCeEEEEEEccccccch----Hhhc-c-eeeeeE
Confidence 3444444333334477899997 99999999888765 355777888877654 3444 4 778888
Q ss_pred E--EECCEEE
Q 027825 132 V--FIKGRYV 139 (218)
Q Consensus 132 V--FI~G~~I 139 (218)
| |.||+-+
T Consensus 119 vlvfknGe~~ 128 (150)
T KOG0910|consen 119 VLVFKNGEKV 128 (150)
T ss_pred EEEEECCEEe
Confidence 7 6788654
No 150
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=90.62 E-value=1.1 Score=37.45 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=39.8
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEecc
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVGGV 142 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IGG~ 142 (218)
.|||++..- +|+.|+.+...|+.. .+.|..+|++.. ++.+.. + ...+|.+ |.+|+.++..
T Consensus 85 ~VVV~Fya~-----wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f-~-v~~vPTlllyk~G~~v~~~ 151 (175)
T cd02987 85 TVVVHIYEP-----GIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEF-D-TDALPALLVYKGGELIGNF 151 (175)
T ss_pred EEEEEEECC-----CCchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhC-C-CCCCCEEEEEECCEEEEEE
Confidence 566544432 599999887766443 466778887643 555666 5 7889976 6699876533
No 151
>PRK14288 chaperone protein DnaJ; Provisional
Probab=90.51 E-value=0.29 Score=45.56 Aligned_cols=49 Identities=35% Similarity=0.870 Sum_probs=32.8
Q ss_pred CcCCCCCCCcce-----eeCCCCCCCceeeecCCc---eeccCCcCcCCc---ccCCCCC
Q 027825 169 RQACEGCGGARF-----VPCFDCGGSCKVVLANGD---KQRCGVCNENGL---VHCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rf-----v~C~~C~Gs~k~~~~~~~---~~rC~~CnenGl---~~C~~C~ 217 (218)
...|+.|.|.+. ..|..|+|+-.+....+. ...|+.|+-.|. .+|+.|.
T Consensus 140 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 199 (369)
T PRK14288 140 QSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACK 199 (369)
T ss_pred eccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCC
Confidence 346888877663 468888888766544432 457888887774 4577774
No 152
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=90.19 E-value=1.7 Score=32.31 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=34.1
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhh----CC---CcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEE
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEV----NR---VVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRY 138 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~----~g---V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~ 138 (218)
|+.|+++| |+.|+.+...|+. ++ +.|..+|++ +. ++.+.. + ...+|.+ |-+|+.
T Consensus 21 vv~F~a~w------C~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~----~~~~~~-~-v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 21 VVDVYQEW------CGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI----DTLKRY-R-GKCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEECCc------CHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH----HHHHHc-C-CCcCcEEEEEECCEE
Confidence 55666664 9999988776654 32 456777777 33 233444 4 7778865 557764
No 153
>PRK14286 chaperone protein DnaJ; Provisional
Probab=90.17 E-value=0.28 Score=45.67 Aligned_cols=49 Identities=31% Similarity=0.777 Sum_probs=34.1
Q ss_pred CcCCCCCCCcce------eeCCCCCCCceeeecCCc---eeccCCcCcCCc---ccCCCCC
Q 027825 169 RQACEGCGGARF------VPCFDCGGSCKVVLANGD---KQRCGVCNENGL---VHCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~~---~~rC~~CnenGl---~~C~~C~ 217 (218)
...|..|.|.+. ..|..|+|+-.++...+. ...|+.|+--|. .+|+.|.
T Consensus 150 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 210 (372)
T PRK14286 150 LESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCG 210 (372)
T ss_pred cccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCC
Confidence 457888888764 678888888766544332 567888887774 3677774
No 154
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=90.12 E-value=1.6 Score=31.46 Aligned_cols=60 Identities=17% Similarity=0.099 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhhCCCcEEEEECCCCH-------HHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825 87 EDCNRVRSTFEVNRVVTDERDVSLHG-------QFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE 147 (218)
Q Consensus 87 ~~C~~vr~iL~~~gV~~~erDVs~d~-------~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~ 147 (218)
..|.+++-+|...||+|+.+.|+... ++.....+.. -...++|.+..||..+.-...|..
T Consensus 10 ~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~-~P~g~vP~L~~~g~~l~ES~AIl~ 76 (82)
T cd03075 10 GLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLG-LDFPNLPYYIDGDVKLTQSNAILR 76 (82)
T ss_pred cccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcC-CcCCCCCEEEECCEEEeehHHHHH
Confidence 57889999999999999988886532 2221111111 135689999988876655555443
No 155
>PRK14298 chaperone protein DnaJ; Provisional
Probab=90.07 E-value=0.32 Score=45.44 Aligned_cols=49 Identities=35% Similarity=0.894 Sum_probs=35.9
Q ss_pred CcCCCCCCCcce------eeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGARF------VPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+. ..|+.|+|+-.++... + ....|+.|+=.|-+ +|+.|.
T Consensus 141 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 205 (377)
T PRK14298 141 AERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCS 205 (377)
T ss_pred eccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCC
Confidence 457999988775 6799999997665432 1 25789999988844 688884
No 156
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=90.04 E-value=1.5 Score=31.83 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=33.6
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhh------CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEV------NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF 133 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~------~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF 133 (218)
+++|+++ +|+.|+.....|.. ..+.+-.+|++.+.+ +.+.. + ...+|.++
T Consensus 22 lv~f~a~------~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~-~-i~~~P~~~ 77 (103)
T cd03001 22 LVEFYAP------WCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS----LAQQY-G-VRGFPTIK 77 (103)
T ss_pred EEEEECC------CCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH----HHHHC-C-CCccCEEE
Confidence 5555666 59999998776644 246677888876654 34444 5 77899874
No 157
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=89.96 E-value=1.7 Score=35.62 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=39.3
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhh-------CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEe
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEV-------NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVG 140 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~-------~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IG 140 (218)
||.|+++| |+.|+.+...|++ .++.+-.+|++.+++..+.+.=...-+..++|.+ |.+|+.++
T Consensus 51 vV~Fya~w------C~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTW------SPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCC------CHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 66677775 9999988866633 2477889999888755443321000001237876 67887664
No 158
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=89.95 E-value=2.2 Score=32.30 Aligned_cols=57 Identities=18% Similarity=0.275 Sum_probs=37.5
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHH----hh---CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE--ECCEEE
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTF----EV---NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF--IKGRYV 139 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL----~~---~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF--I~G~~I 139 (218)
-+|.|+++| |+.|+....+| +. .++.+-.+|++.+.. +.... + ..++|.++ .+|+.+
T Consensus 27 vlV~F~a~w------C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~----l~~~~-~-V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 27 YLIKITSDW------CFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR----LARKL-G-AHSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEEECCc------cHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH----HHHHc-C-CccCCEEEEEECCEEE
Confidence 355666674 99998776544 22 357788888876654 33444 5 78889774 677654
No 159
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=89.92 E-value=0.21 Score=45.13 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=61.6
Q ss_pred CccccCCCCCCCCCCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCC--CHHHHHHHHHHhCCCcccccEE
Q 027825 55 DLLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSL--HGQFLNELKDLLGGETVTVPRV 132 (218)
Q Consensus 55 ~~~~~~~~~~pp~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~--d~~~r~eLk~~~~g~~~tvPqV 132 (218)
.+..++.+..||.. .|||.-+. --..++||-.+.++||.|+++||+. .+..-..+..+. ....||++
T Consensus 13 ~~~~~~ka~~~~e~---~vLyhhpy------sf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlN--p~gevPVl 81 (325)
T KOG4420|consen 13 APEAASKAHWPRES---LVLYHHPY------SFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLN--PGGEVPVL 81 (325)
T ss_pred CchhhcCCCCchhc---ceeeecCc------ccccceeeeehhhcccccceeeccCccccccCchheecC--CCCCCceE
Confidence 33455666665543 89999984 4578999999999999999999974 222233344443 36778987
Q ss_pred EECCEEEecchhhHhHHHh
Q 027825 133 FIKGRYVGGVDELTELNES 151 (218)
Q Consensus 133 FI~G~~IGG~del~~l~e~ 151 (218)
.-+...|-.+.+|.+..|.
T Consensus 82 ~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 82 IHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ecCCeecccHHHHHHHHHH
Confidence 6666778888888877766
No 160
>PRK14295 chaperone protein DnaJ; Provisional
Probab=89.91 E-value=0.29 Score=45.93 Aligned_cols=49 Identities=29% Similarity=0.769 Sum_probs=34.3
Q ss_pred CcCCCCCCCcce------eeCCCCCCCceeeecCCc---eeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGARF------VPCFDCGGSCKVVLANGD---KQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~~---~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+. ..|..|+|+-.++...+. ..+|+.|+=.|.+ +|+.|.
T Consensus 166 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 226 (389)
T PRK14295 166 QAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCK 226 (389)
T ss_pred cccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCC
Confidence 456888877664 578888888766544332 5688888888865 577774
No 161
>PRK14287 chaperone protein DnaJ; Provisional
Probab=89.89 E-value=0.32 Score=45.33 Aligned_cols=49 Identities=29% Similarity=0.849 Sum_probs=36.7
Q ss_pred CcCCCCCCCcc------eeeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGAR------FVPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+ ...|..|+|+-.++... + ....|+.|+-.|.+ +|+.|.
T Consensus 138 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 202 (371)
T PRK14287 138 EETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCG 202 (371)
T ss_pred eccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCC
Confidence 45799998776 46799999997665432 1 15789999999965 688885
No 162
>PRK14301 chaperone protein DnaJ; Provisional
Probab=89.87 E-value=0.3 Score=45.50 Aligned_cols=49 Identities=39% Similarity=0.902 Sum_probs=33.7
Q ss_pred CcCCCCCCCcce------eeCCCCCCCceeeecCCc---eeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGARF------VPCFDCGGSCKVVLANGD---KQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~~---~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+. ..|..|+|+-.+....+. ...|+.|+=.|-+ +|+.|.
T Consensus 144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 204 (373)
T PRK14301 144 NVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCK 204 (373)
T ss_pred cccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCC
Confidence 456888877664 568888888766544332 5778888877743 677774
No 163
>PRK14294 chaperone protein DnaJ; Provisional
Probab=89.79 E-value=0.35 Score=44.86 Aligned_cols=49 Identities=35% Similarity=0.821 Sum_probs=34.8
Q ss_pred CcCCCCCCCcce------eeCCCCCCCceeeecCC---ceeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGARF------VPCFDCGGSCKVVLANG---DKQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~---~~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+. ..|..|+|+-.++...+ ....|+.|+=.|-+ +|+.|.
T Consensus 144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 204 (366)
T PRK14294 144 LETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCH 204 (366)
T ss_pred cccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCC
Confidence 457888888764 57899998876654333 25688888888855 677774
No 164
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=89.57 E-value=1.1 Score=32.28 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=33.9
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhh----C----CCcEEEEECCC-CHHHHHHHHHHhCCCcccccEEEE
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEV----N----RVVTDERDVSL-HGQFLNELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~----~----gV~~~erDVs~-d~~~r~eLk~~~~g~~~tvPqVFI 134 (218)
-++.|+++ +|+.|+....++.. + .+.+-.+|.+. +.++ .... + ...+|.+++
T Consensus 21 ~~v~f~a~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~-~-i~~~P~~~~ 81 (105)
T cd02998 21 VLVEFYAP------WCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDL----AKKY-G-VSGFPTLKF 81 (105)
T ss_pred EEEEEECC------CCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhh----HHhC-C-CCCcCEEEE
Confidence 35666666 59999987766643 2 35677788777 5443 3334 4 778998854
No 165
>PRK14291 chaperone protein DnaJ; Provisional
Probab=89.52 E-value=0.37 Score=45.02 Aligned_cols=49 Identities=35% Similarity=0.837 Sum_probs=36.8
Q ss_pred CcCCCCCCCcc------eeeCCCCCCCceeeecCCc---eeccCCcCcCCcc--cCCCCC
Q 027825 169 RQACEGCGGAR------FVPCFDCGGSCKVVLANGD---KQRCGVCNENGLV--HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~~~---~~rC~~CnenGl~--~C~~C~ 217 (218)
...|..|.|.+ ...|+.|+|+-.++...+. ...|+.|+--|.+ +|+.|.
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~C~~C~ 215 (382)
T PRK14291 156 YVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLREPCSKCN 215 (382)
T ss_pred eccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEEccCCCCCC
Confidence 56799998876 5679999999777655432 5789999988854 588774
No 166
>PRK11752 putative S-transferase; Provisional
Probab=89.50 E-value=1.8 Score=38.11 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=50.6
Q ss_pred CCCCCcEEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCC--CHHHHHHHHHHhCCCcccccEEEECC-
Q 027825 66 PGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSL--HGQFLNELKDLLGGETVTVPRVFIKG- 136 (218)
Q Consensus 66 p~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~--d~~~r~eLk~~~~g~~~tvPqVFI~G- 136 (218)
|-+.+.+.||+.. .++|.+|+-+|+.. |++|+.+.|.. ......++.++. ...++|.+..++
T Consensus 39 ~~~~~~~~Ly~~~-------s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iN--P~GkVP~Lv~~dg 109 (264)
T PRK11752 39 PVGKHPLQLYSLG-------TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEIN--PNSKIPALLDRSG 109 (264)
T ss_pred CCCCCCeEEecCC-------CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhC--CCCCCCEEEeCCC
Confidence 4456689999854 78999999999986 88888776643 223345677765 377899998753
Q ss_pred ---EEEecchhhHh
Q 027825 137 ---RYVGGVDELTE 147 (218)
Q Consensus 137 ---~~IGG~del~~ 147 (218)
..|-....|.+
T Consensus 110 ~~~~~L~ES~AIl~ 123 (264)
T PRK11752 110 NPPIRVFESGAILL 123 (264)
T ss_pred CCCeEEEcHHHHHH
Confidence 34555544444
No 167
>PRK14282 chaperone protein DnaJ; Provisional
Probab=89.47 E-value=0.36 Score=44.84 Aligned_cols=49 Identities=29% Similarity=0.859 Sum_probs=35.2
Q ss_pred CcCCCCCCCcc------eeeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGAR------FVPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+ ...|+.|+|+-.++... + ....|+.|+-.|.+ +|+.|.
T Consensus 152 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 216 (369)
T PRK14282 152 YETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECG 216 (369)
T ss_pred cccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCC
Confidence 45788888866 46799999997665432 1 25689999988865 587774
No 168
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=89.40 E-value=2.7 Score=33.59 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=33.7
Q ss_pred HHHHHHhhCCCcEEEEECCCCHH-------HHHHHHHHhCCCcccccEEEECCEEE--ecchhhH
Q 027825 91 RVRSTFEVNRVVTDERDVSLHGQ-------FLNELKDLLGGETVTVPRVFIKGRYV--GGVDELT 146 (218)
Q Consensus 91 ~vr~iL~~~gV~~~erDVs~d~~-------~r~eLk~~~~g~~~tvPqVFI~G~~I--GG~del~ 146 (218)
.+.+.|++.||.+..+++++++. ..+.|+.. | ...+|.++|||+.+ |.|=...
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~--G-~e~LPitlVdGeiv~~G~YPt~e 92 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTE--G-AEALPITLVDGEIVKTGRYPTNE 92 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH----GGG-SEEEETTEEEEESS---HH
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHc--C-cccCCEEEECCEEEEecCCCCHH
Confidence 44567789999999999988653 33334332 5 88999999999875 7775543
No 169
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=89.11 E-value=0.76 Score=35.66 Aligned_cols=60 Identities=10% Similarity=0.195 Sum_probs=34.9
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhh------CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEE-EE--CCEEEe
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEV------NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRV-FI--KGRYVG 140 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~------~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV-FI--~G~~IG 140 (218)
+|.|+++| |+.|+.+...+.+ ....|..+|++.+.+... +..+-....+|.+ |+ +|+.++
T Consensus 23 lV~F~a~W------C~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~---~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTW------CGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKD---EEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCc------CHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchh---hhcccCCCccceEEEECCCCCCch
Confidence 44466664 9999999877766 334688888876643221 1220102248887 45 454433
No 170
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.05 E-value=0.84 Score=38.04 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=48.6
Q ss_pred EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH-HHHHHHHHHhCCCcccccEEEECCE-EEecchhh
Q 027825 73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG-QFLNELKDLLGGETVTVPRVFIKGR-YVGGVDEL 145 (218)
Q Consensus 73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~-~~r~eLk~~~~g~~~tvPqVFI~G~-~IGG~del 145 (218)
.||.+.. .++|.+|+-+|..+|+.|+.+.|+... ....++.++. ....+|.+..++- .|-....|
T Consensus 2 ~L~~~~~------sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~n--P~gkVPvL~~~~~~~l~ES~AI 68 (211)
T COG0625 2 KLYGSPT------SPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALN--PLGKVPALVDDDGEVLTESGAI 68 (211)
T ss_pred eeecCCC------CcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcC--CCCCCCEEeeCCCCeeecHHHH
Confidence 4666663 599999999999999999999987764 4456677775 3789999988874 34444433
No 171
>PRK14290 chaperone protein DnaJ; Provisional
Probab=88.98 E-value=0.43 Score=44.26 Aligned_cols=49 Identities=27% Similarity=0.749 Sum_probs=35.1
Q ss_pred CcCCCCCCCcce-----eeCCCCCCCceeeecC--Cc-----eeccCCcCcCC---cccCCCCC
Q 027825 169 RQACEGCGGARF-----VPCFDCGGSCKVVLAN--GD-----KQRCGVCNENG---LVHCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rf-----v~C~~C~Gs~k~~~~~--~~-----~~rC~~CnenG---l~~C~~C~ 217 (218)
...|..|.|.+. ..|+.|+|+-.+...- +. ..+|+.|+-.| ..+|+.|.
T Consensus 149 ~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~ 212 (365)
T PRK14290 149 NAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCN 212 (365)
T ss_pred cccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCC
Confidence 457888888775 5799999997654432 21 36899999888 44788884
No 172
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=88.97 E-value=1.7 Score=32.43 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=34.6
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECC-CCHHHHHHHHHHhCCCcccccEEE
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVS-LHGQFLNELKDLLGGETVTVPRVF 133 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs-~d~~~r~eLk~~~~g~~~tvPqVF 133 (218)
-+|.|+++| |+.|+.....|+.. ++.+-.+|.+ .+. ++.+.. + ...+|.++
T Consensus 21 vlV~F~a~W------C~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~-~-V~~~PT~~ 77 (100)
T cd02999 21 TAVLFYASW------CPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRY-G-VVGFPTIL 77 (100)
T ss_pred EEEEEECCC------CHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhc-C-CeecCEEE
Confidence 466777775 99999988777543 4666677776 443 344555 5 78899774
No 173
>PRK14289 chaperone protein DnaJ; Provisional
Probab=88.80 E-value=0.41 Score=44.70 Aligned_cols=49 Identities=31% Similarity=0.752 Sum_probs=36.6
Q ss_pred CcCCCCCCCcce------eeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGARF------VPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+. ..|..|+|+-.++..- + ....|+.|+=.|-+ +|+.|.
T Consensus 154 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 218 (386)
T PRK14289 154 YVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCG 218 (386)
T ss_pred ecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCC
Confidence 467999977664 6799999997765432 1 25789999998865 788885
No 174
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=88.66 E-value=0.42 Score=43.99 Aligned_cols=49 Identities=33% Similarity=0.867 Sum_probs=35.1
Q ss_pred CcCCCCCCCcc------eeeCCCCCCCceeeecCC-------ceeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGAR------FVPCFDCGGSCKVVLANG-------DKQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~~-------~~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+ ...|..|+|+-.++.... ....|+.|+=.|-+ +|+.|.
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 207 (354)
T TIGR02349 143 KESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCK 207 (354)
T ss_pred CCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCC
Confidence 55788888877 567999999876654322 14688888888864 588884
No 175
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=88.65 E-value=0.61 Score=32.81 Aligned_cols=38 Identities=34% Similarity=0.935 Sum_probs=26.1
Q ss_pred CCcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCC
Q 027825 168 GRQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENG 209 (218)
Q Consensus 168 ~~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenG 209 (218)
....|..|.|.+++ +|+.|+|+-+++ ...+|+.|+=+|
T Consensus 14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i----~~~~C~~C~G~g 66 (66)
T PF00684_consen 14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII----EKDPCKTCKGSG 66 (66)
T ss_dssp T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-----TSSB-SSSTTSS
T ss_pred CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE----CCCCCCCCCCcC
Confidence 45689999998876 799999998885 256899997654
No 176
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=88.48 E-value=5.5 Score=31.73 Aligned_cols=81 Identities=25% Similarity=0.550 Sum_probs=48.9
Q ss_pred CCCChHHH-----------HHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHHh
Q 027825 83 RRTYEDCN-----------RVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNES 151 (218)
Q Consensus 83 R~tc~~C~-----------~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e~ 151 (218)
.+||+-|. .++..|...||.+...-+.++.+ ++.. ...+-|.|.|+|+.
T Consensus 12 g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~---~~~~----~~~~S~~I~inG~p------------- 71 (120)
T PF10865_consen 12 GKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE---EFAR----QPLESPTIRINGRP------------- 71 (120)
T ss_pred CCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH---HHhh----cccCCCeeeECCEe-------------
Confidence 55788776 45566788888754444444332 1211 14567999999984
Q ss_pred CcHHHHHhhhhhhcccCCcCCCCCCCcceeeCCCCCC-CceeeecC
Q 027825 152 GKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGG-SCKVVLAN 196 (218)
Q Consensus 152 G~L~~lL~~~~~~~~~~~~~C~~Cgg~rfv~C~~C~G-s~k~~~~~ 196 (218)
|+++| ++.. ....|..|+ |..|.+ .|+++.-+
T Consensus 72 --iE~~l-~~~v----~~s~C~~c~------~~~g~~~~CRt~~~~ 104 (120)
T PF10865_consen 72 --IEDLL-GAEV----GESPCESCG------CSCGGDVDCRTLEYE 104 (120)
T ss_pred --hhHhh-CCcc----ccCcccccc------cccCCCccceeEEEC
Confidence 67777 4433 356787776 445544 47776433
No 177
>PTZ00057 glutathione s-transferase; Provisional
Probab=88.39 E-value=3.9 Score=34.10 Aligned_cols=70 Identities=13% Similarity=0.193 Sum_probs=48.1
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH-HHH--HHHHH-HhCCCcccccEEEECCEEEecchhhH
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG-QFL--NELKD-LLGGETVTVPRVFIKGRYVGGVDELT 146 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~-~~r--~eLk~-~~~g~~~tvPqVFI~G~~IGG~del~ 146 (218)
+++||+... -..+..++-+|+..||+|+.+.+.... ++. ++++. .. .....+|.+.+||..|.-...+.
T Consensus 4 ~~~L~y~~~------~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~-nP~g~vP~L~~~~~~l~eS~AI~ 76 (205)
T PTZ00057 4 EIVLYYFDA------RGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKD-TPFEQVPILEMDNIIFAQSQAIV 76 (205)
T ss_pred ceEEEecCC------CcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCC-CCCCCCCEEEECCEEEecHHHHH
Confidence 488998764 467889999999999999999885432 221 12221 12 23778999999997776555544
Q ss_pred h
Q 027825 147 E 147 (218)
Q Consensus 147 ~ 147 (218)
.
T Consensus 77 ~ 77 (205)
T PTZ00057 77 R 77 (205)
T ss_pred H
Confidence 3
No 178
>PRK14279 chaperone protein DnaJ; Provisional
Probab=88.26 E-value=0.45 Score=44.66 Aligned_cols=49 Identities=27% Similarity=0.657 Sum_probs=32.6
Q ss_pred CcCCCCCCCcce------eeCCCCCCCceeeecCC---ceeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGARF------VPCFDCGGSCKVVLANG---DKQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~---~~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+. ..|+.|+|+-.++...+ ....|+.|+=.|.+ +|+.|.
T Consensus 173 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~ 233 (392)
T PRK14279 173 PAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECK 233 (392)
T ss_pred cccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCCC
Confidence 456888877764 56888888866654433 25678888777743 566663
No 179
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=88.20 E-value=1.5 Score=31.65 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=35.5
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhC---------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE--ECCEE
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN---------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF--IKGRY 138 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~---------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF--I~G~~ 138 (218)
-++.|+++| |+.|+.....|+.. .+.+-.+|.+.+.. +.+.. + ...+|.++ -+|+.
T Consensus 19 ~lv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~-~-v~~~Pt~~~~~~g~~ 85 (102)
T cd03005 19 HFVKFFAPW------CGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE----LCSEF-Q-VRGYPTLLLFKDGEK 85 (102)
T ss_pred EEEEEECCC------CHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh----hHhhc-C-CCcCCEEEEEeCCCe
Confidence 466677774 99999876555332 35677778776653 33334 4 77899864 46643
No 180
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.92 E-value=1.1 Score=41.06 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=45.7
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEec
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVGG 141 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IGG 141 (218)
.+|+||+.+- .|+.|.+..-+|++. ++.+-.+|++.++.+. ... | ..++|.| |++|+.|-|
T Consensus 44 ~PVlV~fWap-----~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vA----aqf-g-iqsIPtV~af~dGqpVdg 112 (304)
T COG3118 44 VPVLVDFWAP-----WCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVA----AQF-G-VQSIPTVYAFKDGQPVDG 112 (304)
T ss_pred CCeEEEecCC-----CCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHH----HHh-C-cCcCCeEEEeeCCcCccc
Confidence 3566666552 599999999988775 2445667777766543 445 6 8999988 899999988
Q ss_pred ch
Q 027825 142 VD 143 (218)
Q Consensus 142 ~d 143 (218)
|.
T Consensus 113 F~ 114 (304)
T COG3118 113 FQ 114 (304)
T ss_pred cC
Confidence 73
No 181
>PRK14280 chaperone protein DnaJ; Provisional
Probab=87.83 E-value=0.57 Score=43.69 Aligned_cols=49 Identities=35% Similarity=0.906 Sum_probs=35.0
Q ss_pred CcCCCCCCCcc------eeeCCCCCCCceeeecCC-------ceeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGAR------FVPCFDCGGSCKVVLANG-------DKQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~~-------~~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+ ...|..|+|+-.++.... ....|+.|+=.|-+ +|+.|.
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 207 (376)
T PRK14280 143 EETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCH 207 (376)
T ss_pred eccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCC
Confidence 45788888876 457999999876654321 25689999888854 588885
No 182
>PRK14293 chaperone protein DnaJ; Provisional
Probab=87.77 E-value=0.49 Score=44.03 Aligned_cols=49 Identities=39% Similarity=0.876 Sum_probs=36.0
Q ss_pred CcCCCCCCCcce------eeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGARF------VPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+. ..|..|+|+-.++..- + ...+|+.|+=.|-+ +|+.|.
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 207 (374)
T PRK14293 143 LETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACG 207 (374)
T ss_pred cccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCC
Confidence 457888887654 5699999997765432 1 25789999999976 788874
No 183
>PRK14292 chaperone protein DnaJ; Provisional
Probab=87.76 E-value=0.51 Score=43.78 Aligned_cols=49 Identities=33% Similarity=0.772 Sum_probs=36.4
Q ss_pred CcCCCCCCCcc-------eeeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGAR-------FVPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~r-------fv~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~ 217 (218)
...|+.|.|.+ ...|..|+|+-.+...- + ....|+.|+-.|.. +|+.|.
T Consensus 139 ~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 204 (371)
T PRK14292 139 LTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCR 204 (371)
T ss_pred eecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCC
Confidence 46799998876 46799999997665321 1 14689999999966 788885
No 184
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=87.25 E-value=1.4 Score=38.61 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=48.7
Q ss_pred CChHHHHHHHHHhhCCCcEE--EEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHH
Q 027825 85 TYEDCNRVRSTFEVNRVVTD--ERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNE 150 (218)
Q Consensus 85 tc~~C~~vr~iL~~~gV~~~--erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e 150 (218)
.|++|+++-..|..+++.|. .+|++.-+ ++++.++ . ...+|.|-.|++.+-..+.+.+..|
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp---~~f~~~s-p-~~~~P~l~~d~~~~tDs~~Ie~~Le 82 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKP---EWFLDIS-P-GGKPPVLKFDEKWVTDSDKIEEFLE 82 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCc---HHHHhhC-C-CCCCCeEEeCCceeccHHHHHHHHH
Confidence 59999999999999999865 55665544 4577777 4 7889999999999988888766544
No 185
>PRK14297 chaperone protein DnaJ; Provisional
Probab=87.23 E-value=0.56 Score=43.77 Aligned_cols=49 Identities=31% Similarity=0.838 Sum_probs=35.3
Q ss_pred CcCCCCCCCcce------eeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGARF------VPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+. ..|..|+|+-.++... + ...+|+.|+=.|.+ +|+.|.
T Consensus 148 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 212 (380)
T PRK14297 148 NENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCH 212 (380)
T ss_pred eccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCC
Confidence 557888888764 5799999997665321 1 26789999888855 688874
No 186
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=87.14 E-value=0.56 Score=48.25 Aligned_cols=55 Identities=27% Similarity=0.501 Sum_probs=35.1
Q ss_pred EEEecchhhHhHHHhCcHHHHHhhhhhhc---ccCCcCCCCCCCcce------------eeCCCCCCCcee
Q 027825 137 RYVGGVDELTELNESGKLGRMLRSARVEM---GIGRQACEGCGGARF------------VPCFDCGGSCKV 192 (218)
Q Consensus 137 ~~IGG~del~~l~e~G~L~~lL~~~~~~~---~~~~~~C~~Cgg~rf------------v~C~~C~Gs~k~ 192 (218)
.|+|-+|++++|..+-...+. .++...+ ...++.|+.|.|.++ |||+.|+|.+..
T Consensus 696 TYtg~Fd~IR~lFA~tpeAK~-rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn 765 (935)
T COG0178 696 TYTGVFDDIRELFAGTPEAKA-RGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYN 765 (935)
T ss_pred chhcchHHHHHHHhcChHHHH-cCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCcccc
Confidence 356678888877654333222 1221111 125689999999886 799999998653
No 187
>PRK10542 glutathionine S-transferase; Provisional
Probab=86.93 E-value=1.5 Score=35.94 Aligned_cols=67 Identities=9% Similarity=0.039 Sum_probs=45.6
Q ss_pred EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHH---HHHHHHHHhCCCcccccEEEE-CCEEEecchhhHhH
Q 027825 73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQ---FLNELKDLLGGETVTVPRVFI-KGRYVGGVDELTEL 148 (218)
Q Consensus 73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~---~r~eLk~~~~g~~~tvPqVFI-~G~~IGG~del~~l 148 (218)
.||.+. .+.+.+++-+|+.+||+|+.+.|+.... ..+++.++. ....+|.+.+ +|..|-....|.+.
T Consensus 2 ~l~~~~-------~s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~n--P~g~vPvL~~~~g~~l~eS~aI~~Y 72 (201)
T PRK10542 2 KLFYKP-------GACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAIN--PKGQVPALLLDDGTLLTEGVAIMQY 72 (201)
T ss_pred ceeecc-------cHHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhC--cCCCCCeEEeCCCcEeecHHHHHHH
Confidence 466655 2357788889999999999887765321 225677765 3778999987 56666655555543
No 188
>PRK14296 chaperone protein DnaJ; Provisional
Probab=86.89 E-value=0.63 Score=43.41 Aligned_cols=49 Identities=31% Similarity=0.815 Sum_probs=34.5
Q ss_pred CcCCCCCCCcce------eeCCCCCCCceeeecC--C-----ceeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGARF------VPCFDCGGSCKVVLAN--G-----DKQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~--~-----~~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+. ..|..|+|+-.++... + ....|+.|+=-|-+ +|+.|.
T Consensus 149 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~ 213 (372)
T PRK14296 149 LTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCK 213 (372)
T ss_pred eeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCC
Confidence 457888888764 5699999997665432 1 24588888887755 588884
No 189
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=86.75 E-value=1.9 Score=30.02 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=23.3
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECC
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVS 109 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs 109 (218)
|++|+.. .||+|..+...|+.. ++.+..+.+.
T Consensus 1 i~~f~d~------~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDP------LCPYCYLFEPELEKLLYADDGGVRVVYRPFP 38 (98)
T ss_pred CeEEECC------CCHhHHhhhHHHHHHHhhcCCcEEEEEeccc
Confidence 4566666 599999998888663 5667777664
No 190
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=86.65 E-value=2.4 Score=29.99 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhCCCcEEEEECCC--CHHHHHHHHHHhCCCc-ccccEEEEC-CEEEecchhhH
Q 027825 88 DCNRVRSTFEVNRVVTDERDVSL--HGQFLNELKDLLGGET-VTVPRVFIK-GRYVGGVDELT 146 (218)
Q Consensus 88 ~C~~vr~iL~~~gV~~~erDVs~--d~~~r~eLk~~~~g~~-~tvPqVFI~-G~~IGG~del~ 146 (218)
.+..++-+|+..|++|+.+.++. .....+++.+.. .. ..+|.+-++ |..+-..-.|.
T Consensus 11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~--p~~g~vP~l~~~~~~~l~es~AI~ 71 (76)
T PF02798_consen 11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAIN--PMFGKVPALEDGDGFVLTESNAIL 71 (76)
T ss_dssp TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHT--TTSSSSSEEEETTTEEEESHHHHH
T ss_pred chHHHHHHHHHhcccCceEEEecccccccchhhhhcc--cccceeeEEEECCCCEEEcHHHHH
Confidence 78999999999999999887654 333347777775 25 799999999 87776555443
No 191
>PRK14276 chaperone protein DnaJ; Provisional
Probab=86.55 E-value=0.68 Score=43.23 Aligned_cols=49 Identities=31% Similarity=0.794 Sum_probs=34.5
Q ss_pred CcCCCCCCCcce------eeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGARF------VPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+. ..|..|+|+-.+.... + ....|+.|+=.|-+ +|+.|.
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 210 (380)
T PRK14276 146 EATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCH 210 (380)
T ss_pred cccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCC
Confidence 557888888764 5799999987664432 1 15688888887754 588774
No 192
>PRK14278 chaperone protein DnaJ; Provisional
Probab=86.54 E-value=0.79 Score=42.80 Aligned_cols=49 Identities=33% Similarity=0.763 Sum_probs=33.6
Q ss_pred CcCCCCCCCcc------eeeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGAR------FVPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+ ...|+.|+|+-.++... + ....|+.|+=.|-+ +|+.|.
T Consensus 139 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 203 (378)
T PRK14278 139 AVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECA 203 (378)
T ss_pred eccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCC
Confidence 45788888766 45789999886654322 1 14678888888743 688774
No 193
>PRK14296 chaperone protein DnaJ; Provisional
Probab=86.38 E-value=0.71 Score=43.05 Aligned_cols=38 Identities=32% Similarity=0.781 Sum_probs=30.2
Q ss_pred CcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|+|.+.+ +|+.|+|.-++. ...|+.|+-.|.+
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 218 (372)
T PRK14296 166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII-----KNKCKNCKGKGKY 218 (372)
T ss_pred CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee-----cccccCCCCceEE
Confidence 4579999998764 799999998874 3559999988765
No 194
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=86.04 E-value=2.3 Score=31.19 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=34.2
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI 134 (218)
-+|.|+++| |+.|+.+...|+.. .+.+-.+|++.+. ..++.+.. + ...+|.+++
T Consensus 21 ~lv~f~a~w------C~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~-~-i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPW------CGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKY-G-VQGFPTLKV 80 (109)
T ss_pred EEEEEECCC------CHHHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHc-C-CCcCCEEEE
Confidence 466777774 99999887665443 3456667776521 12344445 5 788998854
No 195
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=85.59 E-value=2.1 Score=34.22 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=35.5
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE-E--CCEEE
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF-I--KGRYV 139 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF-I--~G~~I 139 (218)
||.|+++ .|+.|+.....|... .+.|..+|++.+. + .++.+.. + ...+|.++ + +|+.+
T Consensus 24 vV~F~A~------WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~-~~~~~~~-~-V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYAD------WCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-W-LPEIDRY-R-VDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECC------cCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-c-HHHHHHc-C-CCCCCEEEEECCCCCEE
Confidence 4455555 499999888776542 3557777776432 2 2333444 5 77899874 5 46544
No 196
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=85.59 E-value=0.68 Score=39.57 Aligned_cols=27 Identities=22% Similarity=0.652 Sum_probs=23.0
Q ss_pred CcCCCCCCCcceee-----CCCCCCCceeeec
Q 027825 169 RQACEGCGGARFVP-----CFDCGGSCKVVLA 195 (218)
Q Consensus 169 ~~~C~~Cgg~rfv~-----C~~C~Gs~k~~~~ 195 (218)
...|+.|+|.++++ |..|+|+-++-..
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~ 130 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPT 130 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeee
Confidence 67899999999985 9999999777543
No 197
>PRK14285 chaperone protein DnaJ; Provisional
Probab=85.35 E-value=0.85 Score=42.42 Aligned_cols=38 Identities=29% Similarity=0.744 Sum_probs=30.3
Q ss_pred CcCCCCCCCccee-----------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARFV-----------PCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rfv-----------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|.|.+.+ +|+.|+|.-++. ...|+.|+-.|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 211 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-----SNPCKSCKGKGSL 211 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCccccc-----CCCCCCCCCCCEE
Confidence 4579999998754 899999998774 3469999988865
No 198
>PRK14282 chaperone protein DnaJ; Provisional
Probab=85.27 E-value=0.99 Score=41.95 Aligned_cols=39 Identities=28% Similarity=0.740 Sum_probs=31.1
Q ss_pred CcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCccc
Q 027825 169 RQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLVH 212 (218)
Q Consensus 169 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~~ 212 (218)
...|..|.|.+.+ +|+.|+|+-++. ...|+.|+-.|.+.
T Consensus 169 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v~ 222 (369)
T PRK14282 169 YVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP-----GEYCHECGGSGRIR 222 (369)
T ss_pred CcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC-----CCCCCCCCCceeEE
Confidence 4579999999764 699999998773 35699999888653
No 199
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=84.95 E-value=2.9 Score=33.00 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=29.5
Q ss_pred ChHHHHHHHHH----hhC--CCcEEEEECCCCHHHH---HHHHHHhCCCcc-cccEEEE
Q 027825 86 YEDCNRVRSTF----EVN--RVVTDERDVSLHGQFL---NELKDLLGGETV-TVPRVFI 134 (218)
Q Consensus 86 c~~C~~vr~iL----~~~--gV~~~erDVs~d~~~r---~eLk~~~~g~~~-tvPqVFI 134 (218)
|+.|+.+.-+| ..+ ++.|..+|+...+.++ .++.... + .. .+|.+.+
T Consensus 40 C~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~-~-I~~~iPT~~~ 96 (119)
T cd02952 40 CPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP-K-LTTGVPTLLR 96 (119)
T ss_pred CHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc-C-cccCCCEEEE
Confidence 99999776544 444 4789999997643222 3344433 3 45 7898854
No 200
>PRK14277 chaperone protein DnaJ; Provisional
Probab=84.95 E-value=0.89 Score=42.56 Aligned_cols=49 Identities=29% Similarity=0.731 Sum_probs=33.0
Q ss_pred CcCCCCCCCcc------eeeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGAR------FVPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+ ...|..|+|+-.++... + ....|+.|+=.|.+ +|+.|.
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 219 (386)
T PRK14277 155 FEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCG 219 (386)
T ss_pred eccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCC
Confidence 45688887755 46788888886654322 1 14678888888855 577774
No 201
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=84.84 E-value=2.2 Score=30.83 Aligned_cols=58 Identities=17% Similarity=0.379 Sum_probs=34.7
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhh--------CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEE
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEV--------NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRY 138 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~--------~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~ 138 (218)
-+|.|+++| |+.|+++...|.. ..+.+-.+|++.+. -.++.... + ...+|.+ |-+|+.
T Consensus 20 ~~v~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~-~-i~~~Pt~~~~~~g~~ 87 (104)
T cd02997 20 VLVMFYAPW------CGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE--HDALKEEY-N-VKGFPTFKYFENGKF 87 (104)
T ss_pred EEEEEECCC------CHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc--cHHHHHhC-C-CccccEEEEEeCCCe
Confidence 367777775 9999988644422 23556677877621 12344445 5 6778877 445543
No 202
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=84.67 E-value=4.2 Score=33.52 Aligned_cols=74 Identities=20% Similarity=0.324 Sum_probs=54.8
Q ss_pred CCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCC---CcccccEEEECCEEEecc---
Q 027825 69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGG---ETVTVPRVFIKGRYVGGV--- 142 (218)
Q Consensus 69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g---~~~tvPqVFI~G~~IGG~--- 142 (218)
..++++|.++ +|.=|..--+.|+.+|+.+...+... ...||+++ | ...+-=...|+|.||=|-
T Consensus 25 ~~~~~vyksP------nCGCC~~w~~~mk~~Gf~Vk~~~~~d----~~alK~~~-gIp~e~~SCHT~VI~Gy~vEGHVPa 93 (149)
T COG3019 25 ATEMVVYKSP------NCGCCDEWAQHMKANGFEVKVVETDD----FLALKRRL-GIPYEMQSCHTAVINGYYVEGHVPA 93 (149)
T ss_pred eeeEEEEeCC------CCccHHHHHHHHHhCCcEEEEeecCc----HHHHHHhc-CCChhhccccEEEEcCEEEeccCCH
Confidence 4569999999 79999999999999998877766543 34566666 3 245667889999999875
Q ss_pred hhhHhHHHhCc
Q 027825 143 DELTELNESGK 153 (218)
Q Consensus 143 del~~l~e~G~ 153 (218)
++|.+|.+++.
T Consensus 94 ~aI~~ll~~~p 104 (149)
T COG3019 94 EAIARLLAEKP 104 (149)
T ss_pred HHHHHHHhCCC
Confidence 55555555444
No 203
>PRK14280 chaperone protein DnaJ; Provisional
Probab=84.62 E-value=0.87 Score=42.46 Aligned_cols=38 Identities=34% Similarity=0.946 Sum_probs=30.3
Q ss_pred CcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|.|.+.+ +|+.|+|+-++. ...|+.|+-.|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 212 (376)
T PRK14280 160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-----KEKCPTCHGKGKV 212 (376)
T ss_pred CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-----cCCCCCCCCceEE
Confidence 4579999998754 799999998774 3569999988865
No 204
>PRK14283 chaperone protein DnaJ; Provisional
Probab=84.38 E-value=1 Score=42.04 Aligned_cols=49 Identities=31% Similarity=0.822 Sum_probs=35.9
Q ss_pred CcCCCCCCCcc------eeeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGAR------FVPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+ ...|..|+|+-.++... + ....|+.|+-.|.. +|..|.
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 210 (378)
T PRK14283 146 TKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCH 210 (378)
T ss_pred eccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCC
Confidence 45788887754 46799999997765432 1 25789999999866 788885
No 205
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=84.35 E-value=2.4 Score=32.87 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=37.7
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCE
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGR 137 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~ 137 (218)
-+|.|+.+| |+.|+.+...|++. .+.+-.+|++.+.+. ..+.. + ..++|.+ |.+|+
T Consensus 32 vlV~FyA~W------C~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l---~~~~~-~-I~~~PTl~lf~~g~ 95 (113)
T cd03006 32 SLVMYYAPW------DAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGK---CRKQK-H-FFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEEECCC------CHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHH---HHHhc-C-CcccCEEEEEECCc
Confidence 477788886 99999988777654 256778888866543 22233 3 5667766 66765
No 206
>PRK14284 chaperone protein DnaJ; Provisional
Probab=84.25 E-value=0.94 Score=42.48 Aligned_cols=38 Identities=32% Similarity=0.904 Sum_probs=30.4
Q ss_pred CcCCCCCCCcce-----------eeCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARF-----------VPCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rf-----------v~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|+|.+. .+|+.|+|.-++. ...|+.|+-.|.+
T Consensus 175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 223 (391)
T PRK14284 175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI-----TDPCSVCRGQGRI 223 (391)
T ss_pred CeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc-----CCcCCCCCCccee
Confidence 467999999987 5899999997763 3469999888765
No 207
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=84.13 E-value=0.97 Score=43.01 Aligned_cols=49 Identities=33% Similarity=0.729 Sum_probs=33.2
Q ss_pred CcCCCCCCCcce-----eeCCCCCCCceeeecC--C-----ceeccCCcCcCCcc-----cCCCCC
Q 027825 169 RQACEGCGGARF-----VPCFDCGGSCKVVLAN--G-----DKQRCGVCNENGLV-----HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rf-----v~C~~C~Gs~k~~~~~--~-----~~~rC~~CnenGl~-----~C~~C~ 217 (218)
...|..|.|.+. ..|..|+|+-.++... + ....|+.|+=-|-+ +|+.|.
T Consensus 150 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~ 215 (421)
T PTZ00037 150 DVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCS 215 (421)
T ss_pred cccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCC
Confidence 456888877663 5799999886543211 1 24588888888865 588885
No 208
>PRK14288 chaperone protein DnaJ; Provisional
Probab=84.13 E-value=1.1 Score=41.81 Aligned_cols=38 Identities=29% Similarity=0.770 Sum_probs=30.4
Q ss_pred CcCCCCCCCccee-----------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARFV-----------PCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rfv-----------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|+|.+.+ +|+.|+|.-++. ...|+.|+-.|.+
T Consensus 156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 204 (369)
T PRK14288 156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-----KTPCQACKGKTYI 204 (369)
T ss_pred CcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-----cccCccCCCcceE
Confidence 4679999999865 699999998874 3459999988765
No 209
>PRK14301 chaperone protein DnaJ; Provisional
Probab=84.12 E-value=0.88 Score=42.44 Aligned_cols=38 Identities=37% Similarity=0.948 Sum_probs=30.1
Q ss_pred CcCCCCCCCcce-----------eeCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARF-----------VPCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rf-----------v~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|.|.+. .+|..|+|.-++. ...|+.|+-.|.+
T Consensus 161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 209 (373)
T PRK14301 161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI-----THPCPKCKGSGIV 209 (373)
T ss_pred CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec-----CCCCCCCCCCcee
Confidence 357999999875 4799999998874 3469999987765
No 210
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=84.02 E-value=3.9 Score=30.22 Aligned_cols=53 Identities=15% Similarity=0.289 Sum_probs=32.7
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhh----C---C--CcEEEEECCCCHHHHHHHHHHhCCCcccccEEE-ECC
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEV----N---R--VVTDERDVSLHGQFLNELKDLLGGETVTVPRVF-IKG 136 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~----~---g--V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF-I~G 136 (218)
++.|+++ .|+.|+.....|+. + + +.+...|++.... +.+.. + ..++|.++ ++|
T Consensus 19 lv~f~a~------wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~-~-I~~~Pt~~l~~~ 81 (104)
T cd03000 19 LVDFYAP------WCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS----IASEF-G-VRGYPTIKLLKG 81 (104)
T ss_pred EEEEECC------CCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh----HHhhc-C-CccccEEEEEcC
Confidence 4556666 49999977655533 2 3 5566677766543 34444 5 77889884 444
No 211
>PRK14281 chaperone protein DnaJ; Provisional
Probab=83.98 E-value=0.99 Score=42.44 Aligned_cols=49 Identities=37% Similarity=0.830 Sum_probs=33.5
Q ss_pred CcCCCCCCCcce-----eeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825 169 RQACEGCGGARF-----VPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rf-----v~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~ 217 (218)
...|..|.|.+. ..|..|+|+-.+.... + ....|+.|+-.|.+ +|+.|.
T Consensus 163 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 226 (397)
T PRK14281 163 QVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACY 226 (397)
T ss_pred eecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCC
Confidence 456888877664 4689999987654322 1 14678888888854 688774
No 212
>PRK14276 chaperone protein DnaJ; Provisional
Probab=83.77 E-value=1 Score=42.06 Aligned_cols=38 Identities=32% Similarity=0.725 Sum_probs=30.5
Q ss_pred CcCCCCCCCcce---------------eeCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARF---------------VPCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rf---------------v~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|.|.+. .+|+.|+|.-++. ..+|+.|+-.|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~~ 215 (380)
T PRK14276 163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI-----KEPCQTCHGTGHE 215 (380)
T ss_pred CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc-----cCCCCCCCCceEE
Confidence 457999999865 3799999998774 3569999988865
No 213
>PRK14279 chaperone protein DnaJ; Provisional
Probab=83.71 E-value=1.1 Score=42.20 Aligned_cols=38 Identities=29% Similarity=0.941 Sum_probs=30.8
Q ss_pred CcCCCCCCCccee-----------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARFV-----------PCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rfv-----------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|.|.+.+ +|+.|+|.-++. ...|+.|+-.|.+
T Consensus 190 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i-----~~~C~~C~G~g~v 238 (392)
T PRK14279 190 PKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII-----EDPCEECKGTGVT 238 (392)
T ss_pred CCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe-----CCcCCCCCCCeEE
Confidence 4679999998764 799999998874 3469999988765
No 214
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=83.62 E-value=6 Score=34.51 Aligned_cols=57 Identities=18% Similarity=0.277 Sum_probs=37.9
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhC----C--CcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEE
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN----R--VVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYV 139 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~----g--V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~I 139 (218)
-+|.|+++| |+.|+++...++.. . +.+..+|++.+. ++.+.. + ...+|.+ |-+|+.+
T Consensus 55 vlV~FyApW------C~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~----~l~~~~-~-I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 55 WFVKFYAPW------CSHCRKMAPAWERLAKALKGQVNVADLDATRAL----NLAKRF-A-IKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEEECCC------ChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH----HHHHHc-C-CCcCCEEEEEECCEEE
Confidence 356677775 99999988776543 2 556677776654 344555 5 7788877 4577654
No 215
>PRK10767 chaperone protein DnaJ; Provisional
Probab=83.57 E-value=1.1 Score=41.63 Aligned_cols=38 Identities=37% Similarity=0.824 Sum_probs=30.2
Q ss_pred CcCCCCCCCccee-----------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARFV-----------PCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rfv-----------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|.|.+.+ +|+.|+|.-+.. ..+|+.|+-.|.+
T Consensus 159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 207 (371)
T PRK10767 159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-----KDPCKKCHGQGRV 207 (371)
T ss_pred CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-----CCCCCCCCCCceE
Confidence 3579999998866 599999998773 3569999988865
No 216
>PRK14297 chaperone protein DnaJ; Provisional
Probab=83.57 E-value=1.1 Score=41.69 Aligned_cols=38 Identities=39% Similarity=0.993 Sum_probs=30.6
Q ss_pred CcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|.|.+.+ +|..|+|.-++. ...|+.|+-.|.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 217 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI-----EDPCNKCHGKGKV 217 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc-----CCCCCCCCCCeEE
Confidence 4579999999765 799999998774 3569999988865
No 217
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=83.45 E-value=5.4 Score=31.07 Aligned_cols=68 Identities=19% Similarity=0.142 Sum_probs=47.3
Q ss_pred CCCcEEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE--ECCEEE
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF--IKGRYV 139 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF--I~G~~I 139 (218)
...+++||-=|. +|+-+..|..-|+.. .+++..+||-.+...-.++.+.+ |-.-.-||++ -+|+.+
T Consensus 18 ~~~~~~iFKHSt-----~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~-~V~HeSPQ~ili~~g~~v 91 (105)
T PF11009_consen 18 KEKPVLIFKHST-----RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDF-GVKHESPQVILIKNGKVV 91 (105)
T ss_dssp --SEEEEEEE-T-----T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHH-T----SSEEEEEETTEEE
T ss_pred ccCcEEEEEeCC-----CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHh-CCCcCCCcEEEEECCEEE
Confidence 356799999886 699999988766553 28899999999999999999999 7677789985 478766
Q ss_pred ec
Q 027825 140 GG 141 (218)
Q Consensus 140 GG 141 (218)
-.
T Consensus 92 ~~ 93 (105)
T PF11009_consen 92 WH 93 (105)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 218
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=83.23 E-value=1 Score=28.34 Aligned_cols=28 Identities=29% Similarity=0.668 Sum_probs=21.8
Q ss_pred eeeCCCCCCCceeeec----CCceeccCCcCc
Q 027825 180 FVPCFDCGGSCKVVLA----NGDKQRCGVCNE 207 (218)
Q Consensus 180 fv~C~~C~Gs~k~~~~----~~~~~rC~~Cne 207 (218)
.+-|+.|+..-++-.+ .+..+||+.|.+
T Consensus 2 ~i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~ 33 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDKLPAGGRKVRCPKCGH 33 (37)
T ss_pred EEECCCCCceEEcCHHHcccCCcEEECCCCCc
Confidence 3679999999888654 345899999975
No 219
>PRK14277 chaperone protein DnaJ; Provisional
Probab=83.18 E-value=1.1 Score=41.97 Aligned_cols=38 Identities=29% Similarity=0.720 Sum_probs=30.7
Q ss_pred CcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|.|.+.+ +|+.|+|+-+... .+|..|+-.|.+
T Consensus 172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-----~~C~~C~G~g~v 224 (386)
T PRK14277 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT-----DPCNKCGGTGRI 224 (386)
T ss_pred CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc-----CCCCCCCCCcEE
Confidence 4579999999754 7999999988742 469999988875
No 220
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=83.04 E-value=5.6 Score=35.11 Aligned_cols=67 Identities=24% Similarity=0.322 Sum_probs=47.5
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCc--EEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEec----chh
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVV--TDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGG----VDE 144 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~--~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG----~de 144 (218)
.|.||+-- ||-.|...-+.|+++|.. ++.+|-+.... ..++. + .-++|.||+||+.+-+ .++
T Consensus 12 ~VkI~~Hk------tC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f--~~~~~---~-V~SvP~Vf~DGel~~~dpVdp~~ 79 (265)
T COG5494 12 EVKIFTHK------TCVSSYMLFEYLENKGLLGKVKIIDAELPPF--LAFEK---G-VISVPSVFIDGELVYADPVDPEE 79 (265)
T ss_pred EEEEEEec------chHHHHHHHHHHHhcCCCCCceEEEcCCChH--HHhhc---c-eeecceEEEcCeEEEcCCCCHHH
Confidence 58888887 899999999999998864 66666654432 12221 3 7899999999988632 355
Q ss_pred hHhHH
Q 027825 145 LTELN 149 (218)
Q Consensus 145 l~~l~ 149 (218)
+..+.
T Consensus 80 ies~~ 84 (265)
T COG5494 80 IESIL 84 (265)
T ss_pred HHHHH
Confidence 55544
No 221
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=82.93 E-value=5.3 Score=32.59 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=35.7
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCC------CcEEEEECCCCHHHHHHHHHHhCCCcc-cccEE-EE-CCE
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNR------VVTDERDVSLHGQFLNELKDLLGGETV-TVPRV-FI-KGR 137 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~g------V~~~erDVs~d~~~r~eLk~~~~g~~~-tvPqV-FI-~G~ 137 (218)
||-|+.+| |+.|+.+--+|++.- +.+..+||+..+++.++ . + .. .+|.+ |. +|+
T Consensus 27 VvdF~A~W------CgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~----y-~-I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 27 VIRFGHDW------DETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTM----Y-E-LYDPCTVMFFFRNKH 89 (142)
T ss_pred EEEEECCC------ChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHH----c-C-ccCCCcEEEEEECCe
Confidence 45566775 999999988776642 45688999988765444 3 3 33 44666 44 554
No 222
>PRK14278 chaperone protein DnaJ; Provisional
Probab=82.82 E-value=1.1 Score=41.74 Aligned_cols=38 Identities=34% Similarity=0.806 Sum_probs=30.4
Q ss_pred CcCCCCCCCcce---------------eeCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARF---------------VPCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rf---------------v~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|.|.+. .+|+.|+|.-++.. ..|+.|+-.|.+
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-----~~C~~C~G~g~v 208 (378)
T PRK14278 156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP-----DPCHECAGDGRV 208 (378)
T ss_pred ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC-----CCCCCCCCceeE
Confidence 457999999874 47999999988742 459999988865
No 223
>PRK14286 chaperone protein DnaJ; Provisional
Probab=82.78 E-value=1.1 Score=41.79 Aligned_cols=39 Identities=31% Similarity=0.831 Sum_probs=30.7
Q ss_pred CcCCCCCCCccee-----------eCCCCCCCceeeecCCceeccCCcCcCCccc
Q 027825 169 RQACEGCGGARFV-----------PCFDCGGSCKVVLANGDKQRCGVCNENGLVH 212 (218)
Q Consensus 169 ~~~C~~Cgg~rfv-----------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~~ 212 (218)
...|..|.|.+.+ +|+.|+|.-++. ..+|+.|+-.|.+.
T Consensus 167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~~~ 216 (372)
T PRK14286 167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI-----SNPCKTCGGQGLQE 216 (372)
T ss_pred CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe-----cccCCCCCCCcEEe
Confidence 3579999998755 799999998774 24699999888764
No 224
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=82.74 E-value=4.1 Score=30.52 Aligned_cols=53 Identities=15% Similarity=0.276 Sum_probs=34.7
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhhC-------CCcEEEEECCC-CHHHHHHHHHHhCCCcccccEEE
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-------RVVTDERDVSL-HGQFLNELKDLLGGETVTVPRVF 133 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~-------gV~~~erDVs~-d~~~r~eLk~~~~g~~~tvPqVF 133 (218)
.-++.|+++| |+.|+++...|... ++.+-.+|++. +..+ ..+.. + ...+|.++
T Consensus 23 ~vlv~f~a~w------C~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~---~~~~~-~-v~~~Pti~ 83 (109)
T cd02993 23 STLVVLYAPW------CPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREF---AKEEL-Q-LKSFPTIL 83 (109)
T ss_pred CEEEEEECCC------CHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhh---HHhhc-C-CCcCCEEE
Confidence 3477788885 99999988776542 46677777765 2322 22334 4 77899874
No 225
>PRK14298 chaperone protein DnaJ; Provisional
Probab=82.71 E-value=1.3 Score=41.35 Aligned_cols=38 Identities=37% Similarity=0.878 Sum_probs=30.3
Q ss_pred CcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|.|.+.+ +|+.|+|.-+.. ..+|+.|+-.|.+
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 210 (377)
T PRK14298 158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-----ESPCPVCSGTGKV 210 (377)
T ss_pred CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-----CCCCCCCCCccEE
Confidence 3679999999854 799999997763 3469999988865
No 226
>PRK14300 chaperone protein DnaJ; Provisional
Probab=82.55 E-value=1.2 Score=41.37 Aligned_cols=38 Identities=26% Similarity=0.782 Sum_probs=29.1
Q ss_pred CcCCCCCCCccee-----------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARFV-----------PCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rfv-----------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|.|.+++ +|+.|+|.-+.. ...|+.|+-.|.+
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 210 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-----KNPCKKCHGMGRY 210 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-----CCCCCCCCCceEE
Confidence 4579999998765 689999887773 3568888887765
No 227
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.53 E-value=2 Score=40.83 Aligned_cols=63 Identities=22% Similarity=0.350 Sum_probs=44.4
Q ss_pred CCCcEEEEEeecCCCCCCChHHHHHHHHHhhCC-----CcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecc
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNR-----VVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGV 142 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~g-----V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~ 142 (218)
++=..--|.+- +|..|-.|.+.|.-+- |...-+| ..-|++|..++. ...+|.||.+|+..|.-
T Consensus 116 g~~~FETy~Sl------tC~nCPDVVQALN~msvlNp~I~H~~Id---Ga~Fq~Evear~---IMaVPtvflnGe~fg~G 183 (520)
T COG3634 116 GDFHFETYFSL------TCHNCPDVVQALNLMSVLNPRIKHTAID---GALFQDEVEARN---IMAVPTVFLNGEEFGQG 183 (520)
T ss_pred CceeEEEEEEe------eccCChHHHHHHHHHHhcCCCceeEEec---chhhHhHHHhcc---ceecceEEEcchhhccc
Confidence 44456677776 5777777777776553 3344444 356788888763 88999999999988754
No 228
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=81.51 E-value=4.2 Score=32.11 Aligned_cols=60 Identities=12% Similarity=0.141 Sum_probs=39.6
Q ss_pred CCcEEEEEeecCCCCCCChHHHHHHHHHhhC-----C-CcEEEEECCCCHHHHHHHHHHhCCCcccccE--EEECCEEE
Q 027825 69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----R-VVTDERDVSLHGQFLNELKDLLGGETVTVPR--VFIKGRYV 139 (218)
Q Consensus 69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~~-----g-V~~~erDVs~d~~~r~eLk~~~~g~~~tvPq--VFI~G~~I 139 (218)
...|||-++.- .|+.|+.+-.+|.+. + +.|-.+||+..+++.+++ + -...|. +|-+|+||
T Consensus 14 ~klVVVdF~a~-----WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y-----~-I~amPtfvffkngkh~ 81 (114)
T cd02986 14 EKVLVLRFGRD-----EDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYF-----D-ISYIPSTIFFFNGQHM 81 (114)
T ss_pred CCEEEEEEeCC-----CChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhc-----C-ceeCcEEEEEECCcEE
Confidence 34455544442 599999998888764 3 668899999877765443 2 333444 57789886
No 229
>PRK14294 chaperone protein DnaJ; Provisional
Probab=81.30 E-value=1.4 Score=40.94 Aligned_cols=38 Identities=37% Similarity=0.830 Sum_probs=29.6
Q ss_pred CcCCCCCCCccee-----------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARFV-----------PCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rfv-----------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|.|.+.+ +|+.|+|.-+.. ...|+.|+-.|.+
T Consensus 161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 209 (366)
T PRK14294 161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-----VSPCKTCHGQGRV 209 (366)
T ss_pred cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-----CcCCCCCCCceEe
Confidence 3579999998754 799999998874 3569999887765
No 230
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=81.29 E-value=1.5 Score=41.78 Aligned_cols=41 Identities=24% Similarity=0.696 Sum_probs=31.8
Q ss_pred CcCCCCCCCcce---------------eeCCCCCCCceeeecCCceeccCCcCcCCccc
Q 027825 169 RQACEGCGGARF---------------VPCFDCGGSCKVVLANGDKQRCGVCNENGLVH 212 (218)
Q Consensus 169 ~~~C~~Cgg~rf---------------v~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~~ 212 (218)
...|..|.|.+. .+|..|+|+-+++.. ..+|+.|+-.|.++
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~---~~~C~~C~G~g~v~ 221 (421)
T PTZ00037 166 FVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE---SKKCKNCSGKGVKK 221 (421)
T ss_pred CccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc---cccCCcCCCcceee
Confidence 457999999884 389999999877542 35699999888764
No 231
>PRK14295 chaperone protein DnaJ; Provisional
Probab=81.25 E-value=1.3 Score=41.47 Aligned_cols=38 Identities=32% Similarity=0.772 Sum_probs=30.3
Q ss_pred CcCCCCCCCcce-----------eeCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARF-----------VPCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rf-----------v~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|.|.+. .+|+.|+|.-++. ...|+.|+-.|.+
T Consensus 183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~~ 231 (389)
T PRK14295 183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA-----DDPCLVCKGSGRA 231 (389)
T ss_pred CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe-----ccCCCCCCCCceE
Confidence 467999999875 5899999998874 3569999988765
No 232
>PRK14290 chaperone protein DnaJ; Provisional
Probab=81.23 E-value=1.5 Score=40.75 Aligned_cols=38 Identities=32% Similarity=0.809 Sum_probs=30.0
Q ss_pred CcCCCCCCCcce---------------eeCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARF---------------VPCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rf---------------v~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|+|.+. .+|+.|+|.-+.. ...|+.|+-.|.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 217 (365)
T PRK14290 165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-----EEKCPRCNGTGTV 217 (365)
T ss_pred CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-----cCCCCCCCCceeE
Confidence 457999999884 4899999998762 4579999887765
No 233
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=80.98 E-value=1.6 Score=40.23 Aligned_cols=39 Identities=33% Similarity=0.877 Sum_probs=30.6
Q ss_pred CcCCCCCCCcce---------------eeCCCCCCCceeeecCCceeccCCcCcCCccc
Q 027825 169 RQACEGCGGARF---------------VPCFDCGGSCKVVLANGDKQRCGVCNENGLVH 212 (218)
Q Consensus 169 ~~~C~~Cgg~rf---------------v~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~~ 212 (218)
...|..|.|.+. .+|..|+|+-+... ..|+.|+-.|.+.
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-----~~C~~C~G~g~v~ 213 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK-----EPCSTCKGKGRVK 213 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC-----CCCCCCCCCcEec
Confidence 457999999764 47999999988743 3599999888764
No 234
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.97 E-value=1.6 Score=42.39 Aligned_cols=48 Identities=29% Similarity=0.622 Sum_probs=36.9
Q ss_pred CCcCCCCCCCcceeeCCCCCCCceeeecCCceeccCCcCcCC--cccCCCCCC
Q 027825 168 GRQACEGCGGARFVPCFDCGGSCKVVLANGDKQRCGVCNENG--LVHCPACSS 218 (218)
Q Consensus 168 ~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~rC~~CnenG--l~~C~~C~~ 218 (218)
+.-.|..||- -+.|+.|+++...+. +...++|..|+-.- -..||.|.+
T Consensus 212 ~~~~C~~Cg~--~~~C~~C~~~l~~h~-~~~~l~Ch~Cg~~~~~~~~Cp~C~s 261 (505)
T TIGR00595 212 KNLLCRSCGY--ILCCPNCDVSLTYHK-KEGKLRCHYCGYQEPIPKTCPQCGS 261 (505)
T ss_pred CeeEhhhCcC--ccCCCCCCCceEEec-CCCeEEcCCCcCcCCCCCCCCCCCC
Confidence 3457999997 467999999966644 45589999998765 457999964
No 235
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=80.96 E-value=3.8 Score=31.35 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=32.4
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhC---------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN---------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~---------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI 134 (218)
-|+.|+++| |+.|+.....++.. .+.+-.+|.+.+. -.++.+.. + ...+|++++
T Consensus 22 vvV~f~a~w------C~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~-~-i~~~Pt~~l 84 (114)
T cd02992 22 WLVEFYASW------CGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDF-G-VTGYPTLRY 84 (114)
T ss_pred EEEEEECCC------CHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhC-C-CCCCCEEEE
Confidence 355666775 99999887766442 1445555654332 23444445 5 778898854
No 236
>PRK14281 chaperone protein DnaJ; Provisional
Probab=80.94 E-value=1.6 Score=41.00 Aligned_cols=38 Identities=39% Similarity=0.924 Sum_probs=30.6
Q ss_pred CcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|+|.+.+ +|+.|+|.-++. ..+|+.|+-.|.+
T Consensus 179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 231 (397)
T PRK14281 179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-----KDRCPACYGEGIK 231 (397)
T ss_pred CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-----CCCCCCCCCCccE
Confidence 4579999998753 699999998874 2469999988876
No 237
>PRK14289 chaperone protein DnaJ; Provisional
Probab=80.89 E-value=1.6 Score=40.81 Aligned_cols=39 Identities=36% Similarity=0.949 Sum_probs=30.4
Q ss_pred CCcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 168 GRQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 168 ~~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
....|..|.|.+.+ +|+.|+|.-+.. ..+|+.|+-.|.+
T Consensus 170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 223 (386)
T PRK14289 170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-----KKKCKKCGGEGIV 223 (386)
T ss_pred CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-----CcCCCCCCCCcEE
Confidence 35679999997665 799999997663 3569999988865
No 238
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=80.48 E-value=4.6 Score=29.04 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=33.1
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhhC--------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVN--------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~--------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI 134 (218)
.-+|.|+++| |+.|+.....|+.. .+.+..+|.+.+ ++.... + ...+|.+++
T Consensus 20 ~~~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~-~-~~~~Pt~~~ 79 (104)
T cd02995 20 DVLVEFYAPW------CGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-----DVPSEF-V-VDGFPTILF 79 (104)
T ss_pred cEEEEEECCC------CHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-----hhhhhc-c-CCCCCEEEE
Confidence 3466777785 99999887766442 255666777654 233333 4 578898754
No 239
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=80.19 E-value=5.8 Score=33.68 Aligned_cols=57 Identities=12% Similarity=0.247 Sum_probs=37.4
Q ss_pred cEEEEEeecCCCCCCChHHHHH----HHHHhhCCCcEEEEECCCCH-----H----HHHHHHHHhCCC-cccccEEEE
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRV----RSTFEVNRVVTDERDVSLHG-----Q----FLNELKDLLGGE-TVTVPRVFI 134 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~v----r~iL~~~gV~~~erDVs~d~-----~----~r~eLk~~~~g~-~~tvPqVFI 134 (218)
++|+|..+| |++|++. +++-+++++.+.-+.++.+. - -...+.+.. |. ...+|..|+
T Consensus 72 ~lV~Fwasw------Cp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~-g~~~~~iPttfL 142 (181)
T PRK13728 72 KVVLFMQGH------CPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFF-PNIPVATPTTFL 142 (181)
T ss_pred eEEEEECCC------CHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHh-CCCCCCCCeEEE
Confidence 488999996 9999987 66667778887666654221 0 113344455 42 258999975
No 240
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=79.96 E-value=6.9 Score=30.14 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=37.5
Q ss_pred CCcEEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEE
Q 027825 69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRY 138 (218)
Q Consensus 69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~ 138 (218)
...|||++++. .|+.|+.+.-+++.+ .+.|-.+||+... ++.... + ...+|.+ |.+|+-
T Consensus 21 ~kliVvdF~a~-----wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~----~~~~~~-~-V~~~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 21 DKLVVVDFYAT-----WCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELE----EVAKEF-N-VKAMPTFVFYKGGEE 86 (106)
T ss_pred CCeEEEEEECC-----CCcchhhhhhHHHHHHHHCCCCEEEEEecccCH----hHHHhc-C-ceEeeEEEEEECCEE
Confidence 34566644443 499999998888765 3557788887632 233333 4 7888987 345543
No 241
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=79.77 E-value=2.2 Score=38.59 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhH
Q 027825 86 YEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELT 146 (218)
Q Consensus 86 c~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~ 146 (218)
-|+|.++-.+|+..+|+|+.+|-++- .++ ..-++|-|-.||++|-+.+-+.
T Consensus 61 SPfClKvEt~lR~~~IpYE~~~~~~~--------~rS--r~G~lPFIELNGe~iaDS~~I~ 111 (281)
T KOG4244|consen 61 SPFCLKVETFLRAYDIPYEIVDCSLK--------RRS--RNGTLPFIELNGEHIADSDLIE 111 (281)
T ss_pred ChHHHHHHHHHHHhCCCceeccccce--------eec--cCCCcceEEeCCeeccccHHHH
Confidence 58999999999999999999887642 222 2669999999999999998763
No 242
>PF15616 TerY-C: TerY-C metal binding domain
Probab=79.44 E-value=2.1 Score=34.67 Aligned_cols=38 Identities=29% Similarity=0.789 Sum_probs=29.5
Q ss_pred CcCCCCCCCc-ceeeCCCCCCCceeee-cCCceeccCCcCcCCc
Q 027825 169 RQACEGCGGA-RFVPCFDCGGSCKVVL-ANGDKQRCGVCNENGL 210 (218)
Q Consensus 169 ~~~C~~Cgg~-rfv~C~~C~Gs~k~~~-~~~~~~rC~~CnenGl 210 (218)
.-.|+.||.. .|+.| .|+ |++- .......||.|..+|-
T Consensus 77 ~PgCP~CGn~~~fa~C-~CG---kl~Ci~g~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 77 APGCPHCGNQYAFAVC-GCG---KLFCIDGEGEVTCPWCGNEGS 116 (131)
T ss_pred CCCCCCCcChhcEEEe-cCC---CEEEeCCCCCEECCCCCCeee
Confidence 4679999999 99999 676 5553 3345899999998874
No 243
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.32 E-value=5 Score=34.73 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=49.5
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhH
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELT 146 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~ 146 (218)
..|++-+.| ..++.+|.+|.-.|+.|++.-+++... -.+++..+ - ..++|.+-|||..|.-.-.+.
T Consensus 4 ykL~Yf~~R------G~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~-p-fgqlP~l~vDg~~i~QS~AI~ 69 (206)
T KOG1695|consen 4 YKLTYFNIR------GLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKM-P-FGQLPVLEVDGKKLVQSRAIL 69 (206)
T ss_pred eEEEecCcc------hhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccC-C-CCCCCEEeECCEeeccHHHHH
Confidence 345555643 589999999999999999999988754 34455544 2 778999999998887655443
No 244
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=79.10 E-value=2 Score=37.01 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=45.5
Q ss_pred CChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE-ECCEEEecchhhHhHH
Q 027825 85 TYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF-IKGRYVGGVDELTELN 149 (218)
Q Consensus 85 tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF-I~G~~IGG~del~~l~ 149 (218)
.||||.++|.++--++|+++..-+..|.+.- =..+. | ...||.+. -+|++++-.-++.+..
T Consensus 8 HCPfcvrarmi~Gl~nipve~~vL~nDDe~T--p~rmi-G-~KqVPiL~Kedg~~m~ESlDIV~y~ 69 (215)
T COG2999 8 HCPFCVRARMIFGLKNIPVELHVLLNDDEET--PIRMI-G-QKQVPILQKEDGRAMPESLDIVHYV 69 (215)
T ss_pred cChHHHHHHHHhhccCCChhhheeccCcccC--hhhhh-c-ccccceEEccccccchhhhHHHHHH
Confidence 6999999999999999999988776654321 11334 6 88999986 5788888776665554
No 245
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=78.32 E-value=18 Score=31.90 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=58.2
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchh---hH
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDE---LT 146 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~de---l~ 146 (218)
++=|.|.=.-++....=+|-++++..|+.+|+.+++.+++..+. +++...+.. .+.-||||-.. ++
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~--~~Ie~~l~~---------~d~IyVgGGNTF~LL~ 100 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPL--AAIENKLMK---------ADIIYVGGGNTFNLLQ 100 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCH--HHHHHhhhh---------ccEEEECCchHHHHHH
Confidence 44555655555666667899999999999999999999986542 444443311 45567777655 67
Q ss_pred hHHHhCcHHHHHhhhhh
Q 027825 147 ELNESGKLGRMLRSARV 163 (218)
Q Consensus 147 ~l~e~G~L~~lL~~~~~ 163 (218)
.|.|.|-++-+.+.+..
T Consensus 101 ~lke~gld~iIr~~vk~ 117 (224)
T COG3340 101 ELKETGLDDIIRERVKA 117 (224)
T ss_pred HHHHhCcHHHHHHHHHc
Confidence 88888877777766554
No 246
>PF13728 TraF: F plasmid transfer operon protein
Probab=78.16 E-value=7.4 Score=33.57 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=38.6
Q ss_pred CCcEEEEEeecCCCCCCChHHHHHHHHH----hhCCCcEEEEECCCC--HHH-----HHHHHHHhCCCcccccEEEE
Q 027825 69 SDGVVIYTTSLRGVRRTYEDCNRVRSTF----EVNRVVTDERDVSLH--GQF-----LNELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 69 ~~kVVlYttsl~giR~tc~~C~~vr~iL----~~~gV~~~erDVs~d--~~~-----r~eLk~~~~g~~~tvPqVFI 134 (218)
.-.+++|+.+ +|++|....-+| +.+|+.+..++++-. +.+ -..+.+.+ | ...+|.+|+
T Consensus 121 ~~gL~~F~~~------~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l-~-v~~~Pal~L 189 (215)
T PF13728_consen 121 KYGLFFFYRS------DCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRL-G-VKVTPALFL 189 (215)
T ss_pred CeEEEEEEcC------CCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHc-C-CCcCCEEEE
Confidence 3468888888 699998766655 456888877777521 011 13344556 6 779999986
No 247
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=78.15 E-value=9 Score=29.28 Aligned_cols=43 Identities=12% Similarity=0.052 Sum_probs=26.2
Q ss_pred CCcEEEEECCCCHH--HHHHHHHHhCCCcccccEEEECCEEEecc
Q 027825 100 RVVTDERDVSLHGQ--FLNELKDLLGGETVTVPRVFIKGRYVGGV 142 (218)
Q Consensus 100 gV~~~erDVs~d~~--~r~eLk~~~~g~~~tvPqVFI~G~~IGG~ 142 (218)
.+.|..+||....+ ..+++.++.-...--.|.|.|+|+.||.-
T Consensus 37 ~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~EG 81 (93)
T PF07315_consen 37 PFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAEG 81 (93)
T ss_dssp -EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEES
T ss_pred ceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEecC
Confidence 46689999975432 34444443314456679999999999843
No 248
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=78.04 E-value=2.3 Score=32.78 Aligned_cols=56 Identities=11% Similarity=0.088 Sum_probs=35.4
Q ss_pred HHHHHHhhCCCcEEEEECC-CCHHHHHHHHH------HhCCCcccccEEEECCEEEecchhhHhH
Q 027825 91 RVRSTFEVNRVVTDERDVS-LHGQFLNELKD------LLGGETVTVPRVFIKGRYVGGVDELTEL 148 (218)
Q Consensus 91 ~vr~iL~~~gV~~~erDVs-~d~~~r~eLk~------~~~g~~~tvPqVFI~G~~IGG~del~~l 148 (218)
.+..++...|+..++.+-. .+.++.+.+++ .. | ...+|.++|+|+.+-|+.....|
T Consensus 87 ~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-i~gtPt~~v~g~~~~G~~~~~~l 149 (154)
T cd03023 87 SLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARAL-G-ITGTPAFIIGDTVIPGAVPADTL 149 (154)
T ss_pred HHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHc-C-CCcCCeEEECCEEecCCCCHHHH
Confidence 4667788888775433211 12333333322 22 4 77899999999999999876544
No 249
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=77.80 E-value=15 Score=27.99 Aligned_cols=36 Identities=8% Similarity=-0.009 Sum_probs=21.2
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhh-------C--CCcEEEEECCCC
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEV-------N--RVVTDERDVSLH 111 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~-------~--gV~~~erDVs~d 111 (218)
.|+||.... .|+.|.+....|.+ . ++.+..++++.+
T Consensus 20 ~vll~Fwa~-----wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~ 64 (131)
T cd03009 20 TVGLYFSAS-----WCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRD 64 (131)
T ss_pred EEEEEEECC-----CChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCC
Confidence 366666553 59999976655532 1 455555555544
No 250
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=77.69 E-value=8.8 Score=30.30 Aligned_cols=64 Identities=13% Similarity=0.050 Sum_probs=38.3
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHH-HHhh--------CCCcEEEEECCCCHHHHHHHHH----HhCCCcccccEEE-E-
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRS-TFEV--------NRVVTDERDVSLHGQFLNELKD----LLGGETVTVPRVF-I- 134 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~-iL~~--------~gV~~~erDVs~d~~~r~eLk~----~~~g~~~tvPqVF-I- 134 (218)
..|+||+.+- .|++|+.+.. .+.. .++.+..+|++..++..+.+.+ .. | ...+|.+. +
T Consensus 16 KpVll~f~a~-----WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~-~-~~G~Pt~vfl~ 88 (124)
T cd02955 16 KPIFLSIGYS-----TCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMT-G-QGGWPLNVFLT 88 (124)
T ss_pred CeEEEEEccC-----CCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhc-C-CCCCCEEEEEC
Confidence 4466655443 5999998854 3322 2455677888766665443332 33 4 66788874 3
Q ss_pred -CCEEEe
Q 027825 135 -KGRYVG 140 (218)
Q Consensus 135 -~G~~IG 140 (218)
+|+.|-
T Consensus 89 ~~G~~~~ 95 (124)
T cd02955 89 PDLKPFF 95 (124)
T ss_pred CCCCEEe
Confidence 567763
No 251
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=77.24 E-value=7.3 Score=28.17 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=33.5
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcc--cccEEEE
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETV--TVPRVFI 134 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~--tvPqVFI 134 (218)
+++|.++ +|+.|+.++..|+.. .+.|..+|++.... +.+.. | -. .+|.+.+
T Consensus 16 ~~~f~~~------~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~----~~~~~-~-i~~~~~P~~~~ 74 (103)
T cd02982 16 LVLFYNK------DDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR----HLEYF-G-LKEEDLPVIAI 74 (103)
T ss_pred EEEEEcC------ChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH----HHHHc-C-CChhhCCEEEE
Confidence 5556555 489999999888663 35677777765443 33444 4 44 8999854
No 252
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=76.63 E-value=2 Score=26.01 Aligned_cols=24 Identities=33% Similarity=0.747 Sum_probs=13.9
Q ss_pred CCCCCCCceeeecCCceeccCCcCc
Q 027825 183 CFDCGGSCKVVLANGDKQRCGVCNE 207 (218)
Q Consensus 183 C~~C~Gs~k~~~~~~~~~rC~~Cne 207 (218)
|+.|.+..+. ...+..++|+.|+.
T Consensus 6 C~~CG~~t~~-~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 6 CGRCGAPTKP-APGGWARRCPSCGH 29 (32)
T ss_dssp -TTT--BEEE--SSSS-EEESSSS-
T ss_pred cCcCCccccC-CCCcCEeECCCCcC
Confidence 7888887766 34466899999973
No 253
>PRK14873 primosome assembly protein PriA; Provisional
Probab=76.50 E-value=2.9 Score=42.11 Aligned_cols=48 Identities=29% Similarity=0.673 Sum_probs=36.9
Q ss_pred CCcCCCCCCCcceeeCCCCCCCceeeecCCceeccCCcCcCC-cccCCCCCC
Q 027825 168 GRQACEGCGGARFVPCFDCGGSCKVVLANGDKQRCGVCNENG-LVHCPACSS 218 (218)
Q Consensus 168 ~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~rC~~CnenG-l~~C~~C~~ 218 (218)
+.-.|..||- .+-|+.|+++...+ .+...++|..|+-.- -.+||.|.+
T Consensus 382 p~l~C~~Cg~--~~~C~~C~~~L~~h-~~~~~l~Ch~CG~~~~p~~Cp~Cgs 430 (665)
T PRK14873 382 PSLACARCRT--PARCRHCTGPLGLP-SAGGTPRCRWCGRAAPDWRCPRCGS 430 (665)
T ss_pred CeeEhhhCcC--eeECCCCCCceeEe-cCCCeeECCCCcCCCcCccCCCCcC
Confidence 4558999996 57799999997764 345689999998643 458999964
No 254
>PRK14287 chaperone protein DnaJ; Provisional
Probab=76.49 E-value=2 Score=39.97 Aligned_cols=38 Identities=37% Similarity=0.984 Sum_probs=30.1
Q ss_pred CcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|.|.+.+ +|+.|+|+-++. ...|+.|+-.|.+
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 207 (371)
T PRK14287 155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII-----KQKCATCGGKGKV 207 (371)
T ss_pred CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc-----cccCCCCCCeeEE
Confidence 4579999999753 799999998874 3559999887765
No 255
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=76.44 E-value=2.2 Score=33.58 Aligned_cols=20 Identities=40% Similarity=0.901 Sum_probs=9.6
Q ss_pred CCCCCCCcceeeCCCCCCCc
Q 027825 171 ACEGCGGARFVPCFDCGGSC 190 (218)
Q Consensus 171 ~C~~Cgg~rfv~C~~C~Gs~ 190 (218)
.|..|.|.+.++|..|+|+.
T Consensus 77 ~C~~C~G~Gk~~C~~C~G~G 96 (111)
T PLN03165 77 KCINCDGAGSLTCTTCQGSG 96 (111)
T ss_pred ECCCCCCcceeeCCCCCCCE
Confidence 34444444444455554443
No 256
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=75.94 E-value=3.4 Score=33.50 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=35.4
Q ss_pred HHHHHHhhCCCcEEEEE-CCCCHHHHHHHHHHh-----CCCcccccEEEECCEEEecchhhHhH
Q 027825 91 RVRSTFEVNRVVTDERD-VSLHGQFLNELKDLL-----GGETVTVPRVFIKGRYVGGVDELTEL 148 (218)
Q Consensus 91 ~vr~iL~~~gV~~~erD-Vs~d~~~r~eLk~~~-----~g~~~tvPqVFI~G~~IGG~del~~l 148 (218)
.+..++.+.|+..++.. ...+.++++.+++-. .| ...+|.++|+|+++-|.+.+..+
T Consensus 125 ~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~g-i~gvPtfvv~g~~~~G~~~l~~~ 187 (192)
T cd03022 125 VLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIARG-VFGVPTFVVDGEMFWGQDRLDML 187 (192)
T ss_pred HHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CCcCCeEEECCeeecccccHHHH
Confidence 45566666666533221 123444554444321 14 78899999999999999987644
No 257
>PRK14291 chaperone protein DnaJ; Provisional
Probab=75.21 E-value=3.2 Score=38.83 Aligned_cols=37 Identities=38% Similarity=0.983 Sum_probs=28.6
Q ss_pred CcCCCCCCCccee-----------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARFV-----------PCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rfv-----------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|.|.+.+ +|+.|+|.-.+ ...|+.|+-.|.+
T Consensus 173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~------~~~C~~C~G~g~v 220 (382)
T PRK14291 173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL------REPCSKCNGRGLV 220 (382)
T ss_pred CccCCCCCCceEEEEecceEEEEecCCCCCCceEE------ccCCCCCCCCceE
Confidence 4579999998865 79999999842 3469999877764
No 258
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=74.70 E-value=5.5 Score=34.34 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=33.8
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhC----CCcEEE-----------EECCCCHHH---HHHHHHHhCCCcccccEEE
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN----RVVTDE-----------RDVSLHGQF---LNELKDLLGGETVTVPRVF 133 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~----gV~~~e-----------rDVs~d~~~---r~eLk~~~~g~~~tvPqVF 133 (218)
|-|||+. .|.-|=-+-++|.++ .|-.-. .|-...++| ++...+..+....-.||++
T Consensus 2 VELFTSQ------GCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~v 75 (202)
T PF06764_consen 2 VELFTSQ------GCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVV 75 (202)
T ss_dssp EEEEE-T------T-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEE
T ss_pred eeEecCC------CCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEE
Confidence 5688888 799998888877665 232111 333344444 3333344422245579999
Q ss_pred ECC-EEEecchh
Q 027825 134 IKG-RYVGGVDE 144 (218)
Q Consensus 134 I~G-~~IGG~de 144 (218)
||| .+.+|.+.
T Consensus 76 VnG~~~~~g~~~ 87 (202)
T PF06764_consen 76 VNGREHRVGSDR 87 (202)
T ss_dssp ETTTEEEETT-H
T ss_pred ECCeeeeeccCH
Confidence 999 55666663
No 259
>PRK14293 chaperone protein DnaJ; Provisional
Probab=74.46 E-value=3 Score=38.87 Aligned_cols=38 Identities=34% Similarity=0.893 Sum_probs=28.9
Q ss_pred CcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|.|.+.+ +|..|+|.-++. ...|..|+-.|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 212 (374)
T PRK14293 160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI-----EDPCDACGGQGVK 212 (374)
T ss_pred CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe-----ccCCCCCCCCccc
Confidence 4569999988763 699999998773 3469999877764
No 260
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=74.43 E-value=9 Score=32.46 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=37.0
Q ss_pred cEEE-EEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEe
Q 027825 71 GVVI-YTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVG 140 (218)
Q Consensus 71 kVVl-Yttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IG 140 (218)
.||| |+.+ +|+.|+.+..+|+.. .+.|..+|++.. .... + ...+|.+ |-+|+.++
T Consensus 104 ~VVV~Fya~------wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-------~~~~-~-i~~lPTlliyk~G~~v~ 166 (192)
T cd02988 104 WVVVHLYKD------GIPLCRLLNQHLSELARKFPDTKFVKIISTQC-------IPNY-P-DKNLPTILVYRNGDIVK 166 (192)
T ss_pred EEEEEEECC------CCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HhhC-C-CCCCCEEEEEECCEEEE
Confidence 4555 5556 499999988877654 467888887531 2344 4 7789987 56887654
No 261
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=74.32 E-value=2.3 Score=36.34 Aligned_cols=31 Identities=19% Similarity=0.515 Sum_probs=24.8
Q ss_pred ceeeCCCCCCCceeeecCCceeccCCcCcCCccc
Q 027825 179 RFVPCFDCGGSCKVVLANGDKQRCGVCNENGLVH 212 (218)
Q Consensus 179 rfv~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~~ 212 (218)
+-..|+.|+|+-++.... ..|+.|+-.|-++
T Consensus 98 ~~~~C~~C~G~G~~i~~~---~~C~~C~G~G~v~ 128 (186)
T TIGR02642 98 NSCKCPRCRGTGLIQRRQ---RECDTCAGTGRFR 128 (186)
T ss_pred cCCcCCCCCCeeEEecCC---CCCCCCCCccEEe
Confidence 488999999998885532 6899999888653
No 262
>PRK14283 chaperone protein DnaJ; Provisional
Probab=74.28 E-value=3.5 Score=38.47 Aligned_cols=38 Identities=39% Similarity=0.952 Sum_probs=27.7
Q ss_pred CcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|.|.+.+ +|..|+|.-+.. ...|..|+-.|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 215 (378)
T PRK14283 163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-----EKPCSNCHGKGVV 215 (378)
T ss_pred CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-----CCCCCCCCCceee
Confidence 4568888888664 588888887663 3558888877764
No 263
>PRK14292 chaperone protein DnaJ; Provisional
Probab=74.26 E-value=3.2 Score=38.49 Aligned_cols=38 Identities=34% Similarity=0.865 Sum_probs=29.5
Q ss_pred CcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 169 RQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 169 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
...|..|+|.+.+ +|..|+|.-+.. ...|+.|+-.|.+
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 209 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-----TDPCTVCRGRGRT 209 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-----CCCCCCCCCceEE
Confidence 4579999998754 599999997763 4679999887764
No 264
>PTZ00062 glutaredoxin; Provisional
Probab=74.11 E-value=11 Score=32.37 Aligned_cols=55 Identities=5% Similarity=0.073 Sum_probs=36.5
Q ss_pred CCcEEEEEeecCCCCCCChHHHHHHHHHhhCC-----CcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEec
Q 027825 69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNR-----VVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVGG 141 (218)
Q Consensus 69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~~g-----V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IGG 141 (218)
.+.+|+|+++. .|+.|+.+..+|...- +.|..+|.+ . + ...+|.+ |-+|+.|+-
T Consensus 17 ~g~~vl~f~a~-----w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d------------~-~-V~~vPtfv~~~~g~~i~r 77 (204)
T PTZ00062 17 TGKLVLYVKSS-----KEPEYEQLMDVCNALVEDFPSLEFYVVNLA------------D-A-NNEYGVFEFYQNSQLINS 77 (204)
T ss_pred CCcEEEEEeCC-----CCcchHHHHHHHHHHHHHCCCcEEEEEccc------------c-C-cccceEEEEEECCEEEee
Confidence 46677777443 5999999998887753 455555543 3 4 7778855 457777654
Q ss_pred c
Q 027825 142 V 142 (218)
Q Consensus 142 ~ 142 (218)
+
T Consensus 78 ~ 78 (204)
T PTZ00062 78 L 78 (204)
T ss_pred e
Confidence 3
No 265
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=74.01 E-value=21 Score=26.95 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=18.7
Q ss_pred CChHHHHHHHHHhhC----CCcEEEEECCCCHH
Q 027825 85 TYEDCNRVRSTFEVN----RVVTDERDVSLHGQ 113 (218)
Q Consensus 85 tc~~C~~vr~iL~~~----gV~~~erDVs~d~~ 113 (218)
.|+.|......|+.+ ++.+..+++..+.+
T Consensus 36 ~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~ 68 (127)
T cd03010 36 WCAPCREEHPVLMALARQGRVPIYGINYKDNPE 68 (127)
T ss_pred cCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHH
Confidence 599999877666443 46666666544433
No 266
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=73.95 E-value=3.1 Score=38.66 Aligned_cols=49 Identities=29% Similarity=0.641 Sum_probs=37.0
Q ss_pred CcCCCCCCCcce-----eeCCCCCCCceeeec-C-------CceeccCCcCcCCcc-----cCCCCC
Q 027825 169 RQACEGCGGARF-----VPCFDCGGSCKVVLA-N-------GDKQRCGVCNENGLV-----HCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~rf-----v~C~~C~Gs~k~~~~-~-------~~~~rC~~CnenGl~-----~C~~C~ 217 (218)
...|+.|-|.++ .+|+.|.|+.-.... . ...++|..||..|-+ +|+.|.
T Consensus 127 ~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~ 193 (337)
T KOG0712|consen 127 NFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCS 193 (337)
T ss_pred CccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccc
Confidence 457888866654 349999999554322 1 138999999999999 999996
No 267
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=73.45 E-value=12 Score=26.81 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHhhCCCc---EEEEECCCCHHHHHHHHHHhCCCcccccEEEE-CCEEEecchhhHhH
Q 027825 85 TYEDCNRVRSTFEVNRVV---TDERDVSLHGQFLNELKDLLGGETVTVPRVFI-KGRYVGGVDELTEL 148 (218)
Q Consensus 85 tc~~C~~vr~iL~~~gV~---~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI-~G~~IGG~del~~l 148 (218)
.-+.|-++..+|+-.+.+ |+.+-.+.. .+ .....+|.+.. +++.+.|+.+|.+.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~--------~~--Sptg~LP~L~~~~~~~vsg~~~Iv~y 70 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNP--------WL--SPTGELPALIDSGGTWVSGFRNIVEY 70 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCC--------Cc--CCCCCCCEEEECCCcEEECHHHHHHh
Confidence 468999999999999999 666554432 11 22668999999 99999999998765
No 268
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=73.27 E-value=3.7 Score=26.35 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=17.1
Q ss_pred eCCCCCCCceeeecCCceeccCCc
Q 027825 182 PCFDCGGSCKVVLANGDKQRCGVC 205 (218)
Q Consensus 182 ~C~~C~Gs~k~~~~~~~~~rC~~C 205 (218)
.|+.|+.+.-++....+..-|+.|
T Consensus 2 ~Cp~Cg~~~~~~D~~~g~~vC~~C 25 (43)
T PF08271_consen 2 KCPNCGSKEIVFDPERGELVCPNC 25 (43)
T ss_dssp SBTTTSSSEEEEETTTTEEEETTT
T ss_pred CCcCCcCCceEEcCCCCeEECCCC
Confidence 488888876344445678899998
No 269
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=73.00 E-value=1.4 Score=35.17 Aligned_cols=58 Identities=12% Similarity=0.199 Sum_probs=30.1
Q ss_pred CCCcEEEEEeecCCCCCCChHHHHHHH----HHhhC-CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCNRVRS----TFEVN-RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~~vr~----iL~~~-gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI 134 (218)
..-+|++++-+| |+||....- +++.. ++.+..+..+.+.+..+.+.. ++...+|.+++
T Consensus 41 ~~~~ilvi~e~W------CgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt---~g~~~IP~~I~ 103 (129)
T PF14595_consen 41 KPYNILVITETW------CGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT---NGGRSIPTFIF 103 (129)
T ss_dssp S-EEEEEE--TT-------HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT----SS--SSEEEE
T ss_pred CCcEEEEEECCC------chhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh---CCCeecCEEEE
Confidence 345799999997 999997654 44554 566655544434333322222 33889999854
No 270
>PRK05580 primosome assembly protein PriA; Validated
Probab=72.73 E-value=3.5 Score=41.43 Aligned_cols=48 Identities=27% Similarity=0.594 Sum_probs=36.1
Q ss_pred CCcCCCCCCCcceeeCCCCCCCceeeecCCceeccCCcCcCC--cccCCCCCC
Q 027825 168 GRQACEGCGGARFVPCFDCGGSCKVVLANGDKQRCGVCNENG--LVHCPACSS 218 (218)
Q Consensus 168 ~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~rC~~CnenG--l~~C~~C~~ 218 (218)
+...|..||-. +.|+.|+++... +.+...++|..|+-.- -.+||.|.+
T Consensus 380 ~~~~C~~Cg~~--~~C~~C~~~l~~-h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~ 429 (679)
T PRK05580 380 PFLLCRDCGWV--AECPHCDASLTL-HRFQRRLRCHHCGYQEPIPKACPECGS 429 (679)
T ss_pred CceEhhhCcCc--cCCCCCCCceeE-ECCCCeEECCCCcCCCCCCCCCCCCcC
Confidence 35579999974 569999998654 3445689999998765 457999953
No 271
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.33 E-value=4.3 Score=38.26 Aligned_cols=39 Identities=33% Similarity=0.860 Sum_probs=29.6
Q ss_pred CCcCCCCCCCcce-------------eeCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 168 GRQACEGCGGARF-------------VPCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 168 ~~~~C~~Cgg~rf-------------v~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
....|..|.|.+. ++|+.|+|+=++. .-.|+.|+=.|.+
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i-----~~pC~~C~G~G~v 209 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII-----KDPCGKCKGKGRV 209 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC-----CCCCCCCCCCCeE
Confidence 3558999988874 4799999987764 4678888877764
No 272
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=71.33 E-value=21 Score=27.43 Aligned_cols=36 Identities=8% Similarity=-0.006 Sum_probs=20.8
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhh-------C--CCcEEEEECCCC
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEV-------N--RVVTDERDVSLH 111 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~-------~--gV~~~erDVs~d 111 (218)
.|+||+.+. .|+.|......|++ . ++.+..+++..+
T Consensus 19 ~vll~F~at-----wC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~ 63 (132)
T cd02964 19 TVGLYFSAS-----WCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRS 63 (132)
T ss_pred EEEEEEECC-----CCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCC
Confidence 355655543 59999986555432 2 455555555543
No 273
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=70.57 E-value=8.1 Score=30.16 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=17.1
Q ss_pred cccccEEEECCEEEecchhhHh
Q 027825 126 TVTVPRVFIKGRYVGGVDELTE 147 (218)
Q Consensus 126 ~~tvPqVFI~G~~IGG~del~~ 147 (218)
...+|.+||||+++.|.-.+.+
T Consensus 134 i~~tPt~~inG~~~~~~~~~~~ 155 (162)
T PF13462_consen 134 ITGTPTFFINGKYVVGPYTIEE 155 (162)
T ss_dssp -SSSSEEEETTCEEETTTSHHH
T ss_pred CccccEEEECCEEeCCCCCHHH
Confidence 6789999999999987655543
No 274
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=70.36 E-value=13 Score=36.56 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=36.0
Q ss_pred cEEE-EEeecCCCCCCChHHHHHHHH-H------hh-CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825 71 GVVI-YTTSLRGVRRTYEDCNRVRST-F------EV-NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 71 kVVl-Yttsl~giR~tc~~C~~vr~i-L------~~-~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI 134 (218)
.|+| |+.+ .|+.|+..... + +. .++.+..+|++.+.+-..++.+.. + ...+|.+++
T Consensus 476 ~VlVdF~A~------WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~-~-v~g~Pt~~~ 540 (571)
T PRK00293 476 PVMLDLYAD------WCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHY-N-VLGLPTILF 540 (571)
T ss_pred cEEEEEECC------cCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHc-C-CCCCCEEEE
Confidence 4555 5555 59999987543 2 11 356788899986544445565666 5 788998843
No 275
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.19 E-value=9 Score=33.10 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=49.1
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCC---CHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSL---HGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE 147 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~---d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~ 147 (218)
+-+||+- | |..|. .+||-.|.-++|+|+.+-|+. ..++-.++++.. ...+||.+.|||..|-..-.+.+
T Consensus 5 KpiLYSY-W---rSSCs--wRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iN--Pm~kVP~L~i~g~tl~eS~AII~ 76 (217)
T KOG0868|consen 5 KPILYSY-W---RSSCS--WRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEIN--PMEKVPTLVIDGLTLTESLAIIE 76 (217)
T ss_pred cchhhhh-h---cccch--HHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcC--chhhCCeEEECCEEeehHHHHHH
Confidence 4555542 3 22465 477778888888888877753 244556888875 38899999999998876655555
Q ss_pred HHH
Q 027825 148 LNE 150 (218)
Q Consensus 148 l~e 150 (218)
..|
T Consensus 77 YLe 79 (217)
T KOG0868|consen 77 YLE 79 (217)
T ss_pred HHH
Confidence 443
No 276
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function.
Probab=70.13 E-value=2.4 Score=28.36 Aligned_cols=33 Identities=45% Similarity=0.823 Sum_probs=22.6
Q ss_pred CCcceeeCCCCCCCceee----e-c-CCceeccCCcCcC
Q 027825 176 GGARFVPCFDCGGSCKVV----L-A-NGDKQRCGVCNEN 208 (218)
Q Consensus 176 gg~rfv~C~~C~Gs~k~~----~-~-~~~~~rC~~Cnen 208 (218)
||.-||.|.+|.---.+. . . +...+||.+|.|-
T Consensus 2 GGAPFv~C~~C~~lLqlP~~~~~~~k~~~klrCGaCs~v 40 (46)
T PF11331_consen 2 GGAPFVVCSSCFELLQLPAKFSLSKKNQQKLRCGACSEV 40 (46)
T ss_pred CCCCEeECccHHHHHcCCCccCCCccceeEEeCCCCcee
Confidence 688999999997532222 1 1 2348999999873
No 277
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=69.98 E-value=11 Score=33.51 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=35.9
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHH----hhCCCcEEEEECCCCHH-------HHHHHHHHhCCCcccccEEEE
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTF----EVNRVVTDERDVSLHGQ-------FLNELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL----~~~gV~~~erDVs~d~~-------~r~eLk~~~~g~~~tvPqVFI 134 (218)
-.|+.|+.+| |+.|+...-+| +.+|+.+..++++.+.. .-..+.+.. | ...+|.+|+
T Consensus 168 ~~Lv~F~Asw------Cp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~-g-V~~vPtl~L 235 (271)
T TIGR02740 168 SGLFFFFKSD------CPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQL-K-IRTVPAVFL 235 (271)
T ss_pred eEEEEEECCC------CccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHc-C-CCcCCeEEE
Confidence 3466667774 99999876655 44677777777654210 012344555 5 788999964
No 278
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=69.37 E-value=5.7 Score=40.55 Aligned_cols=48 Identities=25% Similarity=0.620 Sum_probs=36.8
Q ss_pred CCcCCCCCCCcceeeCCCCCCCceeeecCCceeccCCcCcCCc--ccCCCCCC
Q 027825 168 GRQACEGCGGARFVPCFDCGGSCKVVLANGDKQRCGVCNENGL--VHCPACSS 218 (218)
Q Consensus 168 ~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~rC~~CnenGl--~~C~~C~~ 218 (218)
+.-.|..||=. .-|++|+.+. +++.....++|..|+-..- ..||.|-|
T Consensus 434 ~~l~C~~Cg~v--~~Cp~Cd~~l-t~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs 483 (730)
T COG1198 434 PLLLCRDCGYI--AECPNCDSPL-TLHKATGQLRCHYCGYQEPIPQSCPECGS 483 (730)
T ss_pred ceeecccCCCc--ccCCCCCcce-EEecCCCeeEeCCCCCCCCCCCCCCCCCC
Confidence 35579999863 5699999994 4455567999999998844 57999964
No 279
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=68.64 E-value=5.2 Score=27.75 Aligned_cols=34 Identities=18% Similarity=0.535 Sum_probs=26.1
Q ss_pred cceeeCCCCCCCceeeecCC-----ceeccCCcCcCCcc
Q 027825 178 ARFVPCFDCGGSCKVVLANG-----DKQRCGVCNENGLV 211 (218)
Q Consensus 178 ~rfv~C~~C~Gs~k~~~~~~-----~~~rC~~CnenGl~ 211 (218)
..++.|+.|++..++-.... +-+-||.|..--||
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~EtlI 40 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQETLI 40 (55)
T ss_pred CeEEECCCCCCccceeeecCceeccccccCCCCCceEEE
Confidence 36899999999988876653 46889999765544
No 280
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.46 E-value=2.7 Score=43.97 Aligned_cols=25 Identities=32% Similarity=0.717 Sum_probs=20.3
Q ss_pred CCcCCCCCCCccee------------eCCCCCCCcee
Q 027825 168 GRQACEGCGGARFV------------PCFDCGGSCKV 192 (218)
Q Consensus 168 ~~~~C~~Cgg~rfv------------~C~~C~Gs~k~ 192 (218)
+.+.|+.|.|.+++ +|+.|+|++..
T Consensus 735 ~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~ 771 (924)
T TIGR00630 735 KGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYN 771 (924)
T ss_pred CCCCCCCCccceEEEEEccCCCCcccCCCCcCCceeC
Confidence 46789999999854 79999998754
No 281
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=67.05 E-value=32 Score=28.34 Aligned_cols=29 Identities=7% Similarity=0.011 Sum_probs=19.6
Q ss_pred CChHHHHHHHHH---hhCCCcEEEEECCCCHH
Q 027825 85 TYEDCNRVRSTF---EVNRVVTDERDVSLHGQ 113 (218)
Q Consensus 85 tc~~C~~vr~iL---~~~gV~~~erDVs~d~~ 113 (218)
.|+.|.+..-.| ...++.+.-++++.+.+
T Consensus 79 wC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~ 110 (185)
T PRK15412 79 WCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQ 110 (185)
T ss_pred CCHHHHHHHHHHHHHHHcCCEEEEEECCCCHH
Confidence 599999765444 44578777777655543
No 282
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=66.71 E-value=5 Score=44.85 Aligned_cols=54 Identities=22% Similarity=0.413 Sum_probs=31.1
Q ss_pred EEecchhhHhHHHhCcHHHHHhhhhhhc---ccCCcCCCCCCCcce------------eeCCCCCCCcee
Q 027825 138 YVGGVDELTELNESGKLGRMLRSARVEM---GIGRQACEGCGGARF------------VPCFDCGGSCKV 192 (218)
Q Consensus 138 ~IGG~del~~l~e~G~L~~lL~~~~~~~---~~~~~~C~~Cgg~rf------------v~C~~C~Gs~k~ 192 (218)
|+|=+|+|++|..+=...+.- ++.+.. ..+.+.|+.|.|.+. ++|+.|+|++..
T Consensus 1574 Y~g~fd~IR~lFA~~~~ak~r-g~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~ 1642 (1809)
T PRK00635 1574 YFDIAPSLRNFYASLTQAKAL-NISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQ 1642 (1809)
T ss_pred hhhhHHHHHHHHhcCHHHHHc-CCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCC
Confidence 344457776665433322221 111111 114677999999985 489999998754
No 283
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=65.39 E-value=6 Score=31.51 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=32.8
Q ss_pred HHHHHHHhhCCCcEEEEEC-CCCHHHHHHHHH------HhCCCcccccEEEECCEEEecchhh
Q 027825 90 NRVRSTFEVNRVVTDERDV-SLHGQFLNELKD------LLGGETVTVPRVFIKGRYVGGVDEL 145 (218)
Q Consensus 90 ~~vr~iL~~~gV~~~erDV-s~d~~~r~eLk~------~~~g~~~tvPqVFI~G~~IGG~del 145 (218)
..+.+++...|+..++.+- ..+.++.+.+++ .. | ...+|.++|+|+++-+...+
T Consensus 100 ~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~-g-i~gTPt~iInG~~~~~~~~~ 160 (178)
T cd03019 100 DDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKY-K-ITGVPAFVVNGKYVVNPSAI 160 (178)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc-C-CCCCCeEEECCEEEEChhhc
Confidence 4677888888886443221 123333333322 22 4 77899999999987665543
No 284
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=65.33 E-value=35 Score=27.72 Aligned_cols=35 Identities=9% Similarity=-0.004 Sum_probs=22.3
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhh---CCCcEEEEECCC
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEV---NRVVTDERDVSL 110 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~---~gV~~~erDVs~ 110 (218)
.|+||+.+- .|+.|++....|+. .++.+..+++..
T Consensus 65 ~vll~F~a~-----wC~~C~~~~p~l~~l~~~~~~vi~V~~~~ 102 (173)
T TIGR00385 65 PVLLNVWAS-----WCPPCRAEHPYLNELAKDGLPIVGVDYKD 102 (173)
T ss_pred EEEEEEECC-----cCHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 355555442 59999987655544 467777777643
No 285
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=65.11 E-value=4.6 Score=25.04 Aligned_cols=25 Identities=28% Similarity=0.697 Sum_probs=13.2
Q ss_pred CCCCCCCceeeec--CCceeccCCcCc
Q 027825 183 CFDCGGSCKVVLA--NGDKQRCGVCNE 207 (218)
Q Consensus 183 C~~C~Gs~k~~~~--~~~~~rC~~Cne 207 (218)
|.+|+-.--++.. ++....||+|..
T Consensus 8 C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (41)
T smart00834 8 CEDCGHTFEVLQKISDDPLATCPECGG 34 (41)
T ss_pred cCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence 5555543333221 234677888876
No 286
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=64.59 E-value=4.2 Score=25.45 Aligned_cols=27 Identities=26% Similarity=0.705 Sum_probs=19.7
Q ss_pred eeCCCCCCCceeeec----CCceeccCCcCc
Q 027825 181 VPCFDCGGSCKVVLA----NGDKQRCGVCNE 207 (218)
Q Consensus 181 v~C~~C~Gs~k~~~~----~~~~~rC~~Cne 207 (218)
+.|+.|+-.-.+-.+ ++..++|+.|.+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGH 33 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCC
Confidence 678899887666433 345899999975
No 287
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=63.79 E-value=25 Score=24.85 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=29.9
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhh---------CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEV---------NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~---------~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI 134 (218)
..|+||.++- .|++|+...+.+-+ .++-+..+|++...... .+.. ..+|.++|
T Consensus 18 kpvlv~f~a~-----wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~-~~~~------~~~P~~~~ 79 (82)
T PF13899_consen 18 KPVLVDFGAD-----WCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA-QFDR------QGYPTFFF 79 (82)
T ss_dssp SEEEEEEETT-----TTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH-HHHH------CSSSEEEE
T ss_pred CCEEEEEECC-----CCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH-HhCC------ccCCEEEE
Confidence 3455555543 69999987765422 34556777775443221 2211 22888865
No 288
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=63.78 E-value=5.5 Score=27.06 Aligned_cols=27 Identities=30% Similarity=0.667 Sum_probs=18.4
Q ss_pred eeeCCCCCCCceeeecCC--------ceeccCCcCc
Q 027825 180 FVPCFDCGGSCKVVLANG--------DKQRCGVCNE 207 (218)
Q Consensus 180 fv~C~~C~Gs~k~~~~~~--------~~~rC~~Cne 207 (218)
..||+.| |+..+..... .++.|..|.-
T Consensus 3 LkPCPFC-G~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 3 LKPCPFC-GSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred CcCCCCC-CCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 4589999 7766655431 4678888865
No 289
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=62.41 E-value=5.5 Score=39.61 Aligned_cols=130 Identities=18% Similarity=0.273 Sum_probs=78.3
Q ss_pred EEEEeecCCCCCCChHHHHHHHHHhhCCCc--EEEEECCCC----HHH-------HHHHHHHhC-------CCcccccEE
Q 027825 73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVV--TDERDVSLH----GQF-------LNELKDLLG-------GETVTVPRV 132 (218)
Q Consensus 73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~--~~erDVs~d----~~~-------r~eLk~~~~-------g~~~tvPqV 132 (218)
||+...++ .++-|..++++|.+..-. |...|+..+ .+. |+.|+.+-+ .....+++-
T Consensus 384 Vl~~WDf~----~y~Vs~~a~~~L~~ir~~Pl~~~q~ln~~Ly~~~~~L~~v~~lR~qL~~m~~~l~~Cr~a~~~~~~~~ 459 (580)
T KOG1829|consen 384 VLHNWDFT----KYPVSNFAKQFLDEIREQPLFNLQDLNPDLYSKVKALAEVKELRQQLQHIEGYLKTCRFASLKLLRQR 459 (580)
T ss_pred ceecccCc----ccccchhHHHHHHHHhccchhhhcccChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 67777764 588899999999987543 444555322 111 222211110 112445666
Q ss_pred EECCEEEecchhhHhH-----HHhCcHHHHHhhhhhhcccCCcCCCCCCCcceeeCCCCCCCceeeec-CCceeccCCcC
Q 027825 133 FIKGRYVGGVDELTEL-----NESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLA-NGDKQRCGVCN 206 (218)
Q Consensus 133 FI~G~~IGG~del~~l-----~e~G~L~~lL~~~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~-~~~~~rC~~Cn 206 (218)
+..-+|+---.++..| .++|.|...|+++-+..-..-..|.-|-+.+| +|..|....-+|-- .....||..|+
T Consensus 460 ~~~~~yL~e~~~~~Sl~DL~~i~~g~L~~~l~~~~k~~~~HV~~C~lC~~~gf-iCe~Cq~~~iiyPF~~~~~~rC~~C~ 538 (580)
T KOG1829|consen 460 LAVRRYLTESPHLFSLKDLQDIQDGALLRLLNELTKLSSKHVKECDLCTGKGF-ICELCQHNDIIYPFETRNTRRCSTCL 538 (580)
T ss_pred hhhhhhhccCchhhhhhhHHHhhcccHHHHHHHHHHHhhhhhhhchhhccCee-eeeeccCCCcccccccccceeHHHHH
Confidence 6655565443333222 36788888888776554223456999999998 49999766655533 34578888775
Q ss_pred c
Q 027825 207 E 207 (218)
Q Consensus 207 e 207 (218)
-
T Consensus 539 a 539 (580)
T KOG1829|consen 539 A 539 (580)
T ss_pred H
Confidence 3
No 290
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=62.03 E-value=22 Score=34.43 Aligned_cols=56 Identities=14% Similarity=0.120 Sum_probs=36.3
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhC-------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECC
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN-------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKG 136 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~-------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G 136 (218)
-||.|+.+| |+.|+.+..+|+.. ++.+-.+|++.+.. +...+.. + ...+|.| |.+|
T Consensus 374 VLV~FyApW------C~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~-~-I~~~PTii~Fk~g 438 (463)
T TIGR00424 374 WLVVLYAPW------CPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQEL-Q-LGSFPTILFFPKH 438 (463)
T ss_pred EEEEEECCC------ChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHc-C-CCccceEEEEECC
Confidence 366678885 99999888776442 46778888876531 1222334 4 6788887 4455
No 291
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=61.15 E-value=40 Score=27.42 Aligned_cols=23 Identities=4% Similarity=0.242 Sum_probs=16.8
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhh
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEV 98 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~ 98 (218)
.|+||+... .|+.|++..-.|..
T Consensus 27 ~vlL~FwAs-----WCppCr~e~P~L~~ 49 (146)
T cd03008 27 VLLLFFGAV-----VSPQCQLFAPKLKD 49 (146)
T ss_pred EEEEEEECC-----CChhHHHHHHHHHH
Confidence 467777664 69999988876654
No 292
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=60.75 E-value=8.9 Score=30.09 Aligned_cols=24 Identities=17% Similarity=0.559 Sum_probs=13.7
Q ss_pred CcCCCCCCCc------ceeeCCCCCCCcee
Q 027825 169 RQACEGCGGA------RFVPCFDCGGSCKV 192 (218)
Q Consensus 169 ~~~C~~Cgg~------rfv~C~~C~Gs~k~ 192 (218)
...|..||-. .|..|+.|++....
T Consensus 71 ~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 71 ELECKDCSHVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred EEEhhhCCCccccCCccCCcCcCCCCCceE
Confidence 5567777732 23347777765433
No 293
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=60.59 E-value=19 Score=28.42 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=38.5
Q ss_pred CCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECC
Q 027825 82 VRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKG 136 (218)
Q Consensus 82 iR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G 136 (218)
.|-.|++|..+--+|..+ .+++..+|...- |.++.++++....++|++..++
T Consensus 20 ~~f~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP---R~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 20 QRFYCPHCAAIEGLLASFPDLRERLDVRRVDFPRP---RQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ceEECCchHHHHhHHhhChhhhhcccEEEeCCCCc---hHHHHHHhChhccCCCEEEeCC
Confidence 344699999999999886 455666666544 6777888833378899998766
No 294
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=60.34 E-value=4.9 Score=32.50 Aligned_cols=58 Identities=24% Similarity=0.255 Sum_probs=35.5
Q ss_pred HHHHHHHhhCCCcEEEEEC-CCCHHHHHHHHHHh-----CCCcccccEEEECCE-EEecchhhHhH
Q 027825 90 NRVRSTFEVNRVVTDERDV-SLHGQFLNELKDLL-----GGETVTVPRVFIKGR-YVGGVDELTEL 148 (218)
Q Consensus 90 ~~vr~iL~~~gV~~~erDV-s~d~~~r~eLk~~~-----~g~~~tvPqVFI~G~-~IGG~del~~l 148 (218)
..+..++.+.|+.-++.+- -.+.+.++++++.. -| ...+|.++|+|+ .+-|.+.+..|
T Consensus 124 ~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~g-v~GvP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 124 DVLAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLG-VFGVPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp HHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTT-CSSSSEEEETTTEEEESCSSHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcC-CcccCEEEECCEEEEECCCCHHHH
Confidence 4466777777775444332 23345554444321 15 788999999999 78898877544
No 295
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=58.94 E-value=7.7 Score=38.86 Aligned_cols=42 Identities=29% Similarity=0.582 Sum_probs=29.8
Q ss_pred CcCCCCCCCccee----eCCCCCCCceeeecCC---cee-----ccCCcCcCCc
Q 027825 169 RQACEGCGGARFV----PCFDCGGSCKVVLANG---DKQ-----RCGVCNENGL 210 (218)
Q Consensus 169 ~~~C~~Cgg~rfv----~C~~C~Gs~k~~~~~~---~~~-----rC~~CnenGl 210 (218)
...|.-|.|.+-| .|+.|+|+-|++.-+. .+. -|++|-.|+-
T Consensus 53 ~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~c~~cG~~~~~~~~~lc~~c~~~~~ 106 (715)
T COG1107 53 EIPCPKCRGKGTVTVYDTCPECGGTGKVLTCDICGDIIVPWEEGLCPECRRKPK 106 (715)
T ss_pred CCCCCeeccceeEEEEeecccCCCceeEEeeccccceecCcccccChhHhhCCc
Confidence 5589999998866 5999999988875431 122 4777766654
No 296
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=58.40 E-value=9 Score=23.62 Aligned_cols=27 Identities=44% Similarity=0.934 Sum_probs=18.1
Q ss_pred eeCCCCCCCceeeec----CCceeccCCcCc
Q 027825 181 VPCFDCGGSCKVVLA----NGDKQRCGVCNE 207 (218)
Q Consensus 181 v~C~~C~Gs~k~~~~----~~~~~rC~~Cne 207 (218)
+.|+.|+..-++-.+ ++..++||.|..
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~ 33 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGH 33 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCC
Confidence 568888887666432 234688888865
No 297
>PLN02309 5'-adenylylsulfate reductase
Probab=58.06 E-value=20 Score=34.65 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=35.3
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhhC-------CCcEEEEECC-CCHHHHHHHHHHhCCCcccccEEE
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-------RVVTDERDVS-LHGQFLNELKDLLGGETVTVPRVF 133 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~-------gV~~~erDVs-~d~~~r~eLk~~~~g~~~tvPqVF 133 (218)
.-||.|+++| |++|+.+...|+.. +|.|-.+|++ .+.++ .++.. + ...+|.|+
T Consensus 367 ~vlV~FyApW------C~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~l---a~~~~-~-I~~~PTil 427 (457)
T PLN02309 367 PWLVVLYAPW------CPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEF---AKQEL-Q-LGSFPTIL 427 (457)
T ss_pred eEEEEEECCC------ChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHH---HHhhC-C-CceeeEEE
Confidence 3577888886 99999888766443 4667777777 43332 22234 4 77889884
No 298
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=58.02 E-value=46 Score=26.31 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=17.0
Q ss_pred CChHHHHHHHHH-------hhCCCcEEEEECCCCH
Q 027825 85 TYEDCNRVRSTF-------EVNRVVTDERDVSLHG 112 (218)
Q Consensus 85 tc~~C~~vr~iL-------~~~gV~~~erDVs~d~ 112 (218)
.|+.|.+....| ...++.+..++.+.+.
T Consensus 72 ~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~ 106 (173)
T PRK03147 72 WCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETE 106 (173)
T ss_pred cCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCH
Confidence 599999754433 2234666666665443
No 299
>PTZ00102 disulphide isomerase; Provisional
Probab=57.72 E-value=31 Score=32.16 Aligned_cols=56 Identities=20% Similarity=0.351 Sum_probs=36.3
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHH-------hhC--CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCE
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTF-------EVN--RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGR 137 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL-------~~~--gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~ 137 (218)
.-+|.|+++| |+.|+++...+ ... .|.+-.+|.+.+.+ +.+.. + ...+|.+ |-+|.
T Consensus 51 ~~lv~f~a~w------C~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~----l~~~~-~-i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 51 IVLVKFYAPW------CGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME----LAQEF-G-VRGYPTIKFFNKGN 117 (477)
T ss_pred cEEEEEECCC------CHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH----HHHhc-C-CCcccEEEEEECCc
Confidence 3577777775 99999776433 222 37788888877654 33444 4 6778877 34554
No 300
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=57.29 E-value=33 Score=29.41 Aligned_cols=69 Identities=14% Similarity=0.002 Sum_probs=51.8
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCC--CHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSL--HGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE 147 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~--d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~ 147 (218)
++++|+... -+.|.++.-.++..|+.|+.+.|+. ......|+.++. ...++|.+.-+|-.+-....|..
T Consensus 2 ~~~ly~~~~------s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~n--P~~kVP~l~d~~~~l~eS~AI~~ 72 (226)
T KOG0867|consen 2 KLKLYGHLG------SPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLN--PLGKVPALEDGGLTLWESHAILR 72 (226)
T ss_pred CceEeecCC------CcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcC--cCCCCCeEecCCeEEeeHHHHHH
Confidence 467888884 6789999999999999999986643 344556666665 27799999888877766655543
No 301
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.27 E-value=38 Score=26.21 Aligned_cols=69 Identities=9% Similarity=0.165 Sum_probs=41.8
Q ss_pred CCCcEEEEEeecCCCCCCChHHH------HHHH----HHhh----CCCcEEEEECCCC--HHHHHHHHHHhCCCcccccE
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCN------RVRS----TFEV----NRVVTDERDVSLH--GQFLNELKDLLGGETVTVPR 131 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~------~vr~----iL~~----~gV~~~erDVs~d--~~~r~eLk~~~~g~~~tvPq 131 (218)
.+.++++|.... .|..|- .+-. +|.. +...|..+||..+ .+.-.++.+..-....-.|.
T Consensus 3 ~~~~l~VyGae~-----iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPl 77 (106)
T COG4837 3 NEAKLVVYGAEV-----ICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPL 77 (106)
T ss_pred ceeEEEEecchh-----hhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceE
Confidence 345688888774 566664 2222 2222 2345889999643 34444554443233556799
Q ss_pred EEECCEEEec
Q 027825 132 VFIKGRYVGG 141 (218)
Q Consensus 132 VFI~G~~IGG 141 (218)
|.|++++|+.
T Consensus 78 ivvedeiVae 87 (106)
T COG4837 78 IVVEDEIVAE 87 (106)
T ss_pred EEEcceEeec
Confidence 9999999974
No 302
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=57.11 E-value=26 Score=28.04 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=34.8
Q ss_pred HHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHHhCcHHHHHhhh
Q 027825 89 CNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161 (218)
Q Consensus 89 C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e~G~L~~lL~~~ 161 (218)
=+++++.|+++|+.++.+|+...... ++.+.+ .+.-.||+.| |....+.+..++-.|.+.|..+
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~~--~~~~~i----~~ad~I~~~G---G~~~~l~~~l~~t~l~~~i~~~ 65 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRNDA--DILEAI----READAIFLGG---GDTFRLLRQLKETGLDEAIREA 65 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGHH--HHHHHH----HHSSEEEE-----S-HHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeccCCChH--HHHHHH----HhCCEEEECC---CCHHHHHHHHHhCCHHHHHHHH
Confidence 36789999999999999998763211 222221 1223566555 3333334444445566666554
No 303
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=57.05 E-value=34 Score=31.35 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=37.3
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHh-------hCC--CcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEE
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFE-------VNR--VVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRY 138 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~-------~~g--V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~ 138 (218)
-+|.|+++| |+.|+++...+. ..+ |.+-.+|.+.+. ++.+.. + ...+|.+ |-+|+.
T Consensus 21 ~~v~f~a~w------C~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~----~l~~~~-~-i~~~Pt~~~~~~g~~ 87 (462)
T TIGR01130 21 VLVEFYAPW------CGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK----DLAQKY-G-VSGYPTLKIFRNGED 87 (462)
T ss_pred EEEEEECCC------CHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH----HHHHhC-C-CccccEEEEEeCCcc
Confidence 367777885 999998765443 334 778888887664 344445 5 7778887 445654
No 304
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=56.45 E-value=15 Score=31.04 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=30.7
Q ss_pred HHHHHHHhhCCCcEEEEECC-CCHHHHHHHH------HHhCCCcccccEEEECCEEEecchh
Q 027825 90 NRVRSTFEVNRVVTDERDVS-LHGQFLNELK------DLLGGETVTVPRVFIKGRYVGGVDE 144 (218)
Q Consensus 90 ~~vr~iL~~~gV~~~erDVs-~d~~~r~eLk------~~~~g~~~tvPqVFI~G~~IGG~de 144 (218)
..++.++...|+.-++.+-. .+..+.+.+. ... | ...+|.++|||+|+-+...
T Consensus 124 ~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~-g-I~gtPtfiInGky~v~~~~ 183 (207)
T PRK10954 124 ADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADL-Q-LRGVPAMFVNGKYMVNNQG 183 (207)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc-C-CCCCCEEEECCEEEEcccc
Confidence 34666677777754332211 1222332222 223 4 7889999999999776554
No 305
>TIGR03601 B_an_ocin probable heterocycle-containing bacteriocin, BA_2677 family. Numerous bacteria encode systems for producing bacteriocins by extensive modification of ribosomally produced precursors. These proteins are recognizable in part by proximity to the modification proteins, and in part by small size, with leader peptide-like N-terminal sequence followed by low-complexity sequence rich in Cys, Gly, and/or Ser. This protein family represents a probable member of the class, though previously unrecognized because it is not encoded adjacent to its modification proteins.
Probab=56.36 E-value=19 Score=26.27 Aligned_cols=10 Identities=50% Similarity=0.677 Sum_probs=8.0
Q ss_pred HHHHHHHHHh
Q 027825 113 QFLNELKDLL 122 (218)
Q Consensus 113 ~~r~eLk~~~ 122 (218)
+|++||+++.
T Consensus 3 ~FqqELq~L~ 12 (79)
T TIGR03601 3 QFQQELQSLS 12 (79)
T ss_pred HHHHHHHhcc
Confidence 6888998875
No 306
>PRK04023 DNA polymerase II large subunit; Validated
Probab=55.88 E-value=11 Score=40.04 Aligned_cols=44 Identities=30% Similarity=0.697 Sum_probs=31.4
Q ss_pred CCcCCCCCCCc-ceeeCCCCCCCceeeecCCceeccCCcCcCCc-ccCCCCC
Q 027825 168 GRQACEGCGGA-RFVPCFDCGGSCKVVLANGDKQRCGVCNENGL-VHCPACS 217 (218)
Q Consensus 168 ~~~~C~~Cgg~-rfv~C~~C~Gs~k~~~~~~~~~rC~~CnenGl-~~C~~C~ 217 (218)
....|..||-. -+..|+.|+.. .....+||.|-...- -.||.|-
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~------Te~i~fCP~CG~~~~~y~CPKCG 670 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTH------TEPVYRCPRCGIEVEEDECEKCG 670 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCC------CCcceeCccccCcCCCCcCCCCC
Confidence 46789999966 34589999876 223678999866543 5688884
No 307
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=55.21 E-value=6.4 Score=35.25 Aligned_cols=62 Identities=24% Similarity=0.496 Sum_probs=29.9
Q ss_pred hhhHhHHHhCcHHHHHhhhhhh--------cccCCcCCCCCC--------------CcceeeCCCCCCCceeeecCCcee
Q 027825 143 DELTELNESGKLGRMLRSARVE--------MGIGRQACEGCG--------------GARFVPCFDCGGSCKVVLANGDKQ 200 (218)
Q Consensus 143 del~~l~e~G~L~~lL~~~~~~--------~~~~~~~C~~Cg--------------g~rfv~C~~C~Gs~k~~~~~~~~~ 200 (218)
+.+..+.-..-|+..+..+... .+...+.|.-|| |.||.-|+.|+-.-+. ...
T Consensus 138 ~~~l~~~~~aaL~~~~~~~a~~l~~~~~~~~~w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~-----~R~ 212 (290)
T PF04216_consen 138 PEALAFFLWAALQPFLAALAAALDAALLPPEGWQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF-----VRI 212 (290)
T ss_dssp -GGGHHHHHHHHHHHHHHHHHT--TTSSS---TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE-------TT
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccccccccCCccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee-----cCC
Confidence 3344444445565555544331 112357899996 5699999999877544 256
Q ss_pred ccCCcCcCC
Q 027825 201 RCGVCNENG 209 (218)
Q Consensus 201 rC~~CnenG 209 (218)
+||.|.+..
T Consensus 213 ~Cp~Cg~~~ 221 (290)
T PF04216_consen 213 KCPYCGNTD 221 (290)
T ss_dssp S-TTT---S
T ss_pred CCcCCCCCC
Confidence 788886543
No 308
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=54.98 E-value=11 Score=29.50 Aligned_cols=28 Identities=25% Similarity=0.642 Sum_probs=20.6
Q ss_pred ceeeCCCCCCCceeeec-CC-ceeccCCcC
Q 027825 179 RFVPCFDCGGSCKVVLA-NG-DKQRCGVCN 206 (218)
Q Consensus 179 rfv~C~~C~Gs~k~~~~-~~-~~~rC~~Cn 206 (218)
.||.|+.|+-.--.+.. ++ .+++|-+|.
T Consensus 79 ~yVlC~~C~spdT~l~k~~r~~~l~C~aCG 108 (110)
T smart00653 79 EYVLCPECGSPDTELIKENRLFFLKCEACG 108 (110)
T ss_pred hcEECCCCCCCCcEEEEeCCeEEEEccccC
Confidence 48999999988554443 33 389999995
No 309
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=54.79 E-value=14 Score=33.99 Aligned_cols=37 Identities=35% Similarity=0.872 Sum_probs=25.5
Q ss_pred CCcCCCCCC--------------CcceeeCCCCCCCceeeecCCceeccCCcCcCC
Q 027825 168 GRQACEGCG--------------GARFVPCFDCGGSCKVVLANGDKQRCGVCNENG 209 (218)
Q Consensus 168 ~~~~C~~Cg--------------g~rfv~C~~C~Gs~k~~~~~~~~~rC~~CnenG 209 (218)
....|..|| |.||.-|+.|+..-.. ...+|+.|.+.+
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~-----~R~~C~~Cg~~~ 236 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV-----VRVKCSNCEQSG 236 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccc-----cCccCCCCCCCC
Confidence 467899996 4588888888765333 256777777543
No 310
>PHA00626 hypothetical protein
Probab=54.36 E-value=9.6 Score=26.68 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=9.3
Q ss_pred CCCCCCcceeeCCCCCC
Q 027825 172 CEGCGGARFVPCFDCGG 188 (218)
Q Consensus 172 C~~Cgg~rfv~C~~C~G 188 (218)
|+.||-.-.+-|..|.+
T Consensus 3 CP~CGS~~Ivrcg~cr~ 19 (59)
T PHA00626 3 CPKCGSGNIAKEKTMRG 19 (59)
T ss_pred CCCCCCceeeeeceecc
Confidence 56666555555555544
No 311
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=54.04 E-value=24 Score=27.47 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=28.3
Q ss_pred CCCCCcEEEEEeecCCCCCCChHHHHHHH----HHhhC----CCcEEEEECCCCHH
Q 027825 66 PGGSDGVVIYTTSLRGVRRTYEDCNRVRS----TFEVN----RVVTDERDVSLHGQ 113 (218)
Q Consensus 66 p~~~~kVVlYttsl~giR~tc~~C~~vr~----iL~~~----gV~~~erDVs~d~~ 113 (218)
|.+...|++|+.- .||+|.++-. +++.+ .|.|..+++..+..
T Consensus 10 ~~a~~~v~~f~d~------~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~ 59 (162)
T PF13462_consen 10 PDAPITVTEFFDF------QCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKH 59 (162)
T ss_dssp TTTSEEEEEEE-T------TSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHH
T ss_pred CCCCeEEEEEECC------CCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccch
Confidence 3455567778777 6999997744 33443 67799999866544
No 312
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=53.63 E-value=7.7 Score=23.98 Aligned_cols=24 Identities=33% Similarity=0.800 Sum_probs=12.5
Q ss_pred eCCCCCCCceeeecCCceeccCCcC
Q 027825 182 PCFDCGGSCKVVLANGDKQRCGVCN 206 (218)
Q Consensus 182 ~C~~C~Gs~k~~~~~~~~~rC~~Cn 206 (218)
.|+.|++.. ++..+.+.+.|+.|.
T Consensus 5 ~C~~C~~~~-i~~~~~~~~~C~~Cg 28 (33)
T PF08792_consen 5 KCSKCGGNG-IVNKEDDYEVCIFCG 28 (33)
T ss_pred EcCCCCCCe-EEEecCCeEEcccCC
Confidence 355555553 333444566676664
No 313
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=52.77 E-value=8.5 Score=30.77 Aligned_cols=43 Identities=21% Similarity=0.493 Sum_probs=30.0
Q ss_pred HhCcHHHHHhhhhhhcccCCcCCCCCCCcceeeCCCCCCCceeeecCC--ceeccCCcCc
Q 027825 150 ESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLANG--DKQRCGVCNE 207 (218)
Q Consensus 150 e~G~L~~lL~~~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~--~~~rC~~Cne 207 (218)
....|+.+|..+=. .||.|+.|+..--.+..++ .+++|-+|..
T Consensus 78 ~~~~i~~~L~~fI~---------------~yVlC~~C~spdT~l~k~~r~~~l~C~aCGa 122 (125)
T PF01873_consen 78 SSKQIQDLLDKFIK---------------EYVLCPECGSPDTELIKEGRLIFLKCKACGA 122 (125)
T ss_dssp SCCHHHHHHHHHHC---------------HHSSCTSTSSSSEEEEEETTCCEEEETTTSC
T ss_pred CHHHHHHHHHHHHH---------------HEEEcCCCCCCccEEEEcCCEEEEEecccCC
Confidence 45667777766543 4788999998855554333 4999999975
No 314
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=52.47 E-value=11 Score=30.77 Aligned_cols=13 Identities=38% Similarity=0.629 Sum_probs=7.8
Q ss_pred eeCCCCCCCceee
Q 027825 181 VPCFDCGGSCKVV 193 (218)
Q Consensus 181 v~C~~C~Gs~k~~ 193 (218)
.+|..|.|.+.++
T Consensus 100 ~~C~~Cgg~rfv~ 112 (147)
T cd03031 100 GVCEGCGGARFVP 112 (147)
T ss_pred CCCCCCCCcCeEE
Confidence 3477777765443
No 315
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=52.44 E-value=16 Score=23.73 Aligned_cols=24 Identities=29% Similarity=0.750 Sum_probs=14.4
Q ss_pred CCCCCCCceeeecCCceeccCCcC
Q 027825 183 CFDCGGSCKVVLANGDKQRCGVCN 206 (218)
Q Consensus 183 C~~C~Gs~k~~~~~~~~~rC~~Cn 206 (218)
|+.|+..+-........-+|.+|.
T Consensus 21 CP~Cg~~~~~~~~~~~~~~C~~C~ 44 (46)
T PF12760_consen 21 CPHCGSTKHYRLKTRGRYRCKACR 44 (46)
T ss_pred CCCCCCeeeEEeCCCCeEECCCCC
Confidence 777776622233444677787775
No 316
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=52.38 E-value=16 Score=29.68 Aligned_cols=33 Identities=21% Similarity=0.533 Sum_probs=23.3
Q ss_pred ceeeCCCCCCCceeeecC-C-ceeccCCcCcCCcc
Q 027825 179 RFVPCFDCGGSCKVVLAN-G-DKQRCGVCNENGLV 211 (218)
Q Consensus 179 rfv~C~~C~Gs~k~~~~~-~-~~~rC~~CnenGl~ 211 (218)
.||.|+.|+-.--.+..+ + .+++|-+|....-|
T Consensus 101 ~yVlC~~C~spdT~l~k~~r~~~l~C~ACGa~~~V 135 (138)
T PRK03988 101 EYVICPECGSPDTKLIKEGRIWVLKCEACGAETPV 135 (138)
T ss_pred hcEECCCCCCCCcEEEEcCCeEEEEcccCCCCCcC
Confidence 489999999885544433 3 39999999865443
No 317
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=52.25 E-value=11 Score=40.63 Aligned_cols=43 Identities=35% Similarity=0.837 Sum_probs=30.3
Q ss_pred CcCCCCCCCcc-eeeCCCCCCCceeeecCCceeccCCcCc------CCcccCCCCC
Q 027825 169 RQACEGCGGAR-FVPCFDCGGSCKVVLANGDKQRCGVCNE------NGLVHCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg~r-fv~C~~C~Gs~k~~~~~~~~~rC~~Cne------nGl~~C~~C~ 217 (218)
...|..||..- ..-|+.|+.+... ...|+.|+- ++-..||.|-
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~------vy~CPsCGaev~~des~a~~CP~CG 716 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEP------VYVCPDCGAEVPPDESGRVECPRCD 716 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCC------ceeCccCCCccCCCccccccCCCCC
Confidence 56899999743 2479999988533 338888865 3345788884
No 318
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=51.89 E-value=25 Score=30.96 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=22.7
Q ss_pred CCCcEEEEEeecCCCCCCChHHHHHHHHHhh----CCCcEEEEEC
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEV----NRVVTDERDV 108 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~----~gV~~~erDV 108 (218)
+...|++||=. .||||++.-+-+.. -.|.+..+.+
T Consensus 117 ak~~I~vFtDp------~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 117 APRIVYVFADP------NCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred CCeEEEEEECC------CChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 34456666666 79999998665542 2366666554
No 319
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=50.12 E-value=19 Score=29.09 Aligned_cols=32 Identities=16% Similarity=0.547 Sum_probs=22.5
Q ss_pred ceeeCCCCCCCceeeecC-C-ceeccCCcCcCCc
Q 027825 179 RFVPCFDCGGSCKVVLAN-G-DKQRCGVCNENGL 210 (218)
Q Consensus 179 rfv~C~~C~Gs~k~~~~~-~-~~~rC~~CnenGl 210 (218)
.||.|+.|+-.--.+..+ + .+++|-+|..-.-
T Consensus 96 ~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~ 129 (133)
T TIGR00311 96 KYVICRECNRPDTRIIKEGRVSLLKCEACGAKAP 129 (133)
T ss_pred heEECCCCCCCCcEEEEeCCeEEEecccCCCCCc
Confidence 489999999885444433 3 2789999976543
No 320
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=49.61 E-value=80 Score=25.70 Aligned_cols=35 Identities=9% Similarity=0.128 Sum_probs=24.4
Q ss_pred CCcEEEEEeecCCCCCCChHHHHHHHHHh----hCCCcEEEEECC
Q 027825 69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFE----VNRVVTDERDVS 109 (218)
Q Consensus 69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~----~~gV~~~erDVs 109 (218)
+.+++.|..+| |+.|++..-.|+ ++++.+.-++++
T Consensus 51 ~~~lvnFWAsW------CppCr~e~P~L~~l~~~~~~~Vi~Vs~d 89 (153)
T TIGR02738 51 DYALVFFYQST------CPYCHQFAPVLKRFSQQFGLPVYAFSLD 89 (153)
T ss_pred CCEEEEEECCC------ChhHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 34588888885 999997766554 456666665554
No 321
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=49.42 E-value=1e+02 Score=23.41 Aligned_cols=45 Identities=7% Similarity=-0.053 Sum_probs=24.4
Q ss_pred CChHHHHHHHH-------HhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE
Q 027825 85 TYEDCNRVRST-------FEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF 133 (218)
Q Consensus 85 tc~~C~~vr~i-------L~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF 133 (218)
.|+.|..-... +...++.+.-+..+...... .+.+.. ..++|.+.
T Consensus 35 ~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~-~~~~~~---~~~~p~~~ 86 (149)
T cd02970 35 GCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLE-AFDKGK---FLPFPVYA 86 (149)
T ss_pred CChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHH-HHHHhc---CCCCeEEE
Confidence 59999974433 33456766666655433332 333332 45677544
No 322
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=48.87 E-value=25 Score=26.84 Aligned_cols=37 Identities=14% Similarity=0.203 Sum_probs=24.9
Q ss_pred CCCCcEEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECC
Q 027825 67 GGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVS 109 (218)
Q Consensus 67 ~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs 109 (218)
.+.-.|++|+.. .||+|.+....|+.. .+.+..+++.
T Consensus 4 ~a~~~i~~f~D~------~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p 45 (154)
T cd03023 4 NGDVTIVEFFDY------NCGYCKKLAPELEKLLKEDPDVRVVFKEFP 45 (154)
T ss_pred CCCEEEEEEECC------CChhHHHhhHHHHHHHHHCCCceEEEEeCC
Confidence 344567777766 699999887666552 2567777764
No 323
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=48.73 E-value=29 Score=31.02 Aligned_cols=59 Identities=10% Similarity=0.121 Sum_probs=38.9
Q ss_pred CCCcEEEEEeecCCCCCCChHHHHHHHHH----hhCCCcEEEEECCCC--HHHH-----HHHHHHhCCCcccccEEEE
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTF----EVNRVVTDERDVSLH--GQFL-----NELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL----~~~gV~~~erDVs~d--~~~r-----~eLk~~~~g~~~tvPqVFI 134 (218)
.+-.+++|+.+ .|++|.+.--+| +.+|+.+..++++-. +++. ..+.+.+ | ...+|.+|+
T Consensus 150 ~~~gL~fFy~~------~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l-~-v~~~Pal~L 219 (256)
T TIGR02739 150 QSYGLFFFYRG------KSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHL-G-VKYFPALYL 219 (256)
T ss_pred hceeEEEEECC------CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhc-C-CccCceEEE
Confidence 34568888888 699999866655 567888777777532 1111 2234445 5 677999985
No 324
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=48.17 E-value=12 Score=33.30 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=24.4
Q ss_pred CCcCCCCCCCcceeeCCCCCCCceeeecC
Q 027825 168 GRQACEGCGGARFVPCFDCGGSCKVVLAN 196 (218)
Q Consensus 168 ~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~ 196 (218)
....|..-.|..+++|+.|.|+-++..+.
T Consensus 26 ~~~py~e~~g~~~vtCPTCqGtGrIP~eq 54 (238)
T PF07092_consen 26 SSFPYVEFTGRDSVTCPTCQGTGRIPREQ 54 (238)
T ss_pred ccCccccccCCCCCcCCCCcCCccCCccc
Confidence 45678888999999999999999987654
No 325
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=47.98 E-value=15 Score=23.42 Aligned_cols=29 Identities=34% Similarity=0.649 Sum_probs=17.1
Q ss_pred ceeeCCCCCCC-ceeeecCC--ceeccCCcCc
Q 027825 179 RFVPCFDCGGS-CKVVLANG--DKQRCGVCNE 207 (218)
Q Consensus 179 rfv~C~~C~Gs-~k~~~~~~--~~~rC~~Cne 207 (218)
+-+||+.|.|+ ++.+.+.. +.--|..|+.
T Consensus 2 ~~~pCP~CGG~DrFr~~d~~g~G~~~C~~Cg~ 33 (37)
T smart00778 2 RHGPCPNCGGSDRFRFDDKDGRGTWFCSVCGA 33 (37)
T ss_pred CccCCCCCCCccccccccCCCCcCEEeCCCCC
Confidence 35789999887 44444321 3455666654
No 326
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=47.85 E-value=35 Score=25.58 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=33.7
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHH-HHhhCCCc--------EEEEECCCCHHHHHHHHHHhCCCcccccEE-EEC
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRS-TFEVNRVV--------TDERDVSLHGQFLNELKDLLGGETVTVPRV-FIK 135 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~-iL~~~gV~--------~~erDVs~d~~~r~eLk~~~~g~~~tvPqV-FI~ 135 (218)
..++||..+- .|++|+...+ +|....|. +-..|+... +. .+|.... + ...+|.+ ||+
T Consensus 18 K~llv~~~~~-----~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~-e~-~~~~~~~-~-~~~~P~~~~i~ 84 (114)
T cd02958 18 KWLLVYLQSE-----DEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS-EG-QRFLQSY-K-VDKYPHIAIID 84 (114)
T ss_pred ceEEEEEecC-----CcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc-cH-HHHHHHh-C-ccCCCeEEEEe
Confidence 4477777774 6999987643 44433222 344566542 32 3455666 5 7788988 553
No 327
>PRK12495 hypothetical protein; Provisional
Probab=47.77 E-value=28 Score=30.67 Aligned_cols=27 Identities=22% Similarity=0.721 Sum_probs=18.5
Q ss_pred CCcCCCCCCCcceeeCCCCCCCceeeecCCceeccCCcCcC
Q 027825 168 GRQACEGCGGARFVPCFDCGGSCKVVLANGDKQRCGVCNEN 208 (218)
Q Consensus 168 ~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~rC~~Cnen 208 (218)
....|..||..-| .-.+..+|+.|.+.
T Consensus 41 sa~hC~~CG~PIp--------------a~pG~~~Cp~CQ~~ 67 (226)
T PRK12495 41 TNAHCDECGDPIF--------------RHDGQEFCPTCQQP 67 (226)
T ss_pred chhhcccccCccc--------------CCCCeeECCCCCCc
Confidence 4678999998776 12456777777653
No 328
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=47.63 E-value=9.7 Score=40.01 Aligned_cols=25 Identities=36% Similarity=0.713 Sum_probs=20.0
Q ss_pred CCcCCCCCCCcce------------eeCCCCCCCcee
Q 027825 168 GRQACEGCGGARF------------VPCFDCGGSCKV 192 (218)
Q Consensus 168 ~~~~C~~Cgg~rf------------v~C~~C~Gs~k~ 192 (218)
+.+.|+.|.|.++ ++|+.|+|.+..
T Consensus 737 ~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~ 773 (943)
T PRK00349 737 KGGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYN 773 (943)
T ss_pred CCCCCCcccccceEEEEeccCCCccccCccccCcccc
Confidence 4677999999865 579999998765
No 329
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=45.54 E-value=15 Score=27.43 Aligned_cols=14 Identities=14% Similarity=0.083 Sum_probs=10.2
Q ss_pred CChHHHHHHHHHhh
Q 027825 85 TYEDCNRVRSTFEV 98 (218)
Q Consensus 85 tc~~C~~vr~iL~~ 98 (218)
.|+.|......|..
T Consensus 31 ~C~~C~~~~~~l~~ 44 (123)
T cd03011 31 WCPVCRFTSPTVNQ 44 (123)
T ss_pred cChhhhhhChHHHH
Confidence 59999987655544
No 330
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=44.95 E-value=61 Score=24.17 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=40.7
Q ss_pred CChHHHHHHHHHhhCCC--cEEEEECCCCHHH--HHHHHHHhCCCcccccEEEECCE-EEecchhhHhHHHhCc
Q 027825 85 TYEDCNRVRSTFEVNRV--VTDERDVSLHGQF--LNELKDLLGGETVTVPRVFIKGR-YVGGVDELTELNESGK 153 (218)
Q Consensus 85 tc~~C~~vr~iL~~~gV--~~~erDVs~d~~~--r~eLk~~~~g~~~tvPqVFI~G~-~IGG~del~~l~e~G~ 153 (218)
.|+.|....+.+..+.. .+..+|+..+.+. .+.. .+......+.-.+.-+|+ ...|.+.+.++...-.
T Consensus 6 ~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~~~ 78 (114)
T PF04134_consen 6 DCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASY-GISPEDADSRLHLIDDGERVYRGSDAVLRLLRRLP 78 (114)
T ss_pred CCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhc-CcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHHcC
Confidence 49999999999999864 5888888443322 1111 000000122233323776 8899999887776633
No 331
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=44.42 E-value=39 Score=26.71 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=23.3
Q ss_pred CCCcEEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECC
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVS 109 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs 109 (218)
+.-.|++|+.- .||+|..+-..+... +|.|..+.+.
T Consensus 15 ~~~~i~~f~D~------~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 15 GKPEVIEFFSY------GCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CCcEEEEEECC------CCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 44456666665 699999877655432 4566666654
No 332
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=44.29 E-value=1.1e+02 Score=25.94 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=49.5
Q ss_pred CCcEEEEEeecCCCCCCChHHHHHHHHHhhC-CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825 69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE 147 (218)
Q Consensus 69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~~-gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~ 147 (218)
..+=++|..+-+..+ =++-..+++.|+.. |+.+...++..+++..+.|.+. =.||+.| |....+++
T Consensus 30 ~~~~i~~IptAs~~~--~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~a--------d~I~l~G---G~~~~~~~ 96 (212)
T cd03146 30 ARPKVLFVPTASGDR--DEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEA--------DVIYVGG---GNTFNLLA 96 (212)
T ss_pred CCCeEEEECCCCCCH--HHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcC--------CEEEECC---chHHHHHH
Confidence 333445554433322 25678899999999 9998888875554444555433 2577777 55555544
Q ss_pred HHHhCcHHHHHhhh
Q 027825 148 LNESGKLGRMLRSA 161 (218)
Q Consensus 148 l~e~G~L~~lL~~~ 161 (218)
..+.-.|.++|+.+
T Consensus 97 ~l~~~~l~~~l~~~ 110 (212)
T cd03146 97 QWREHGLDAILKAA 110 (212)
T ss_pred HHHHcCHHHHHHHH
Confidence 44444677777765
No 333
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=43.62 E-value=18 Score=23.37 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=5.8
Q ss_pred eeccCCcCc
Q 027825 199 KQRCGVCNE 207 (218)
Q Consensus 199 ~~rC~~Cne 207 (218)
..+||.|+.
T Consensus 21 ~~~Cp~CG~ 29 (46)
T PRK00398 21 GVRCPYCGY 29 (46)
T ss_pred ceECCCCCC
Confidence 566776654
No 334
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=42.94 E-value=30 Score=23.61 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=27.4
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECC
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKG 136 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G 136 (218)
+.||++. .--....++.+|++.||.+..+|-.+..- .-. . | ....+.|+|..
T Consensus 1 ~~l~~~~------~~~ea~~i~~~L~~~gI~~~v~~~~~~~~----~g~-~-g-~~~~~~v~V~~ 52 (67)
T PF09413_consen 1 KKLYTAG------DPIEAELIKGLLEENGIPAFVKNEHMSGY----AGE-P-G-TGGQVEVYVPE 52 (67)
T ss_dssp EEEEEE--------HHHHHHHHHHHHHTT--EE--S----SS--------S----SSSEEEEEEG
T ss_pred CEEEEcC------CHHHHHHHHHHHHhCCCcEEEECCccchh----hcc-c-C-ccCceEEEECH
Confidence 3567777 34678999999999999998877653321 001 2 3 33348888876
No 335
>PF09369 DUF1998: Domain of unknown function (DUF1998); InterPro: IPR018973 This entry represents a family of DEAD/DEAH-box-containing family of helicases. It includes Hrq1 from Saccharomyces, a putative RecQ helicase []. RecQ helicases are involved in maintaining genomic integrity.
Probab=41.91 E-value=17 Score=26.18 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=33.0
Q ss_pred cccccEEEECCEEEecchhhHhHHHhCcHHHHHhhhhhh
Q 027825 126 TVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVE 164 (218)
Q Consensus 126 ~~tvPqVFI~G~~IGG~del~~l~e~G~L~~lL~~~~~~ 164 (218)
....|.||+-+..-||.--..++.+...+.++|+.+-..
T Consensus 32 ~~~~~~i~lyD~~~GG~G~~~~l~~~~~~~~ll~~A~~~ 70 (84)
T PF09369_consen 32 RQGPPRIFLYDTVPGGAGYAERLFERERFEELLRRALEL 70 (84)
T ss_pred CCCccEEEEEECCCCchhhHhhhcChhHHHHHHHHHHHH
Confidence 356799999999999999999998888899999876654
No 336
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=41.88 E-value=1.3e+02 Score=21.79 Aligned_cols=14 Identities=14% Similarity=0.335 Sum_probs=10.2
Q ss_pred CChHHHHHHHHHhh
Q 027825 85 TYEDCNRVRSTFEV 98 (218)
Q Consensus 85 tc~~C~~vr~iL~~ 98 (218)
+|+.|......|++
T Consensus 32 wC~~C~~~~p~l~~ 45 (114)
T cd02967 32 TCPVCKKLLPVIRS 45 (114)
T ss_pred CCcchHhHhHHHHH
Confidence 59999977655544
No 337
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=41.78 E-value=30 Score=26.97 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=12.6
Q ss_pred CCcCCCCCCCc------ceeeCCCCCCC
Q 027825 168 GRQACEGCGGA------RFVPCFDCGGS 189 (218)
Q Consensus 168 ~~~~C~~Cgg~------rfv~C~~C~Gs 189 (218)
....|..||-. .+..|+.|++.
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 96 (114)
T PRK03681 69 AECWCETCQQYVTLLTQRVRRCPQCHGD 96 (114)
T ss_pred cEEEcccCCCeeecCCccCCcCcCcCCC
Confidence 35568888642 22456666654
No 338
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=41.45 E-value=29 Score=29.74 Aligned_cols=32 Identities=22% Similarity=0.525 Sum_probs=21.8
Q ss_pred ceeeCCCCCCCceeeec-CC-ceeccCCcCcCCc
Q 027825 179 RFVPCFDCGGSCKVVLA-NG-DKQRCGVCNENGL 210 (218)
Q Consensus 179 rfv~C~~C~Gs~k~~~~-~~-~~~rC~~CnenGl 210 (218)
.||.|..|+-.--.+.. ++ .+++|-+|..-.-
T Consensus 97 ~yV~C~~C~~pdT~l~k~~~~~~l~C~aCGa~~~ 130 (201)
T PRK12336 97 EYVICSECGLPDTRLVKEDRVLMLRCDACGAHRP 130 (201)
T ss_pred heEECCCCCCCCcEEEEcCCeEEEEcccCCCCcc
Confidence 48899999887444443 33 3889999976543
No 339
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=40.93 E-value=29 Score=22.72 Aligned_cols=26 Identities=27% Similarity=0.579 Sum_probs=14.4
Q ss_pred eCCCCCCCceeeecCCceeccCCcCcCC
Q 027825 182 PCFDCGGSCKVVLANGDKQRCGVCNENG 209 (218)
Q Consensus 182 ~C~~C~Gs~k~~~~~~~~~rC~~CnenG 209 (218)
.|..|+..-. ....+.+|||.|.-.=
T Consensus 4 ~C~~Cg~~~~--~~~~~~irC~~CG~rI 29 (44)
T smart00659 4 ICGECGRENE--IKSKDVVRCRECGYRI 29 (44)
T ss_pred ECCCCCCEee--cCCCCceECCCCCceE
Confidence 3666655322 2234578888886543
No 340
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=39.98 E-value=1.4e+02 Score=26.18 Aligned_cols=77 Identities=10% Similarity=0.051 Sum_probs=43.1
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHHh
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNES 151 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e~ 151 (218)
-|+|.-.-+.....=.+-..+++.|+..|+.+..+++..+ ..+.| . . .=.|||.| |..-.+.+....
T Consensus 33 ~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d--~~~~l---~-~----ad~I~v~G---Gnt~~l~~~l~~ 99 (233)
T PRK05282 33 KAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVAD--PVAAI---E-N----AEAIFVGG---GNTFQLLKQLYE 99 (233)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchh--hHHHH---h-c----CCEEEECC---ccHHHHHHHHHH
Confidence 3555544443333345678899999999999888887633 22222 2 1 11455554 333334444444
Q ss_pred CcHHHHHhhh
Q 027825 152 GKLGRMLRSA 161 (218)
Q Consensus 152 G~L~~lL~~~ 161 (218)
-.|.+.|++.
T Consensus 100 ~gl~~~l~~~ 109 (233)
T PRK05282 100 RGLLAPIREA 109 (233)
T ss_pred CCcHHHHHHH
Confidence 4566666554
No 341
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=39.84 E-value=90 Score=21.99 Aligned_cols=14 Identities=7% Similarity=0.181 Sum_probs=10.3
Q ss_pred CChHHHHHHHHHhh
Q 027825 85 TYEDCNRVRSTFEV 98 (218)
Q Consensus 85 tc~~C~~vr~iL~~ 98 (218)
.|+.|......|.+
T Consensus 12 ~c~~c~~~~~~l~~ 25 (95)
T PF13905_consen 12 WCPPCKKELPKLKE 25 (95)
T ss_dssp TSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 59999987766643
No 342
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=39.59 E-value=10 Score=35.92 Aligned_cols=55 Identities=22% Similarity=0.414 Sum_probs=38.8
Q ss_pred CCEEEecchhhHhHHHhCcHHHHHh--hhhhhcccCCcCCCCCCC-----------cceeeCCCCCCCce
Q 027825 135 KGRYVGGVDELTELNESGKLGRMLR--SARVEMGIGRQACEGCGG-----------ARFVPCFDCGGSCK 191 (218)
Q Consensus 135 ~G~~IGG~del~~l~e~G~L~~lL~--~~~~~~~~~~~~C~~Cgg-----------~rfv~C~~C~Gs~k 191 (218)
+|..+-|.+++.+..+.|..+.||- .+...+ ....|..|+- ..+..|+.|++...
T Consensus 290 ~G~avyG~~eV~~ALe~GAVetLLV~d~l~~~r--~~~r~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 357 (409)
T TIGR00108 290 DGLACYGEDEVLKALDLGAVETLIVSEDLEYIR--VTYKCAECGEVIEKTVRELKDKKFAICPACGQEMD 357 (409)
T ss_pred CCcEEeCHHHHHHHHHhCCCcEEEEecccccee--EEEEcCCCCceeecccccccccccccCcccCcccc
Confidence 4788999999999999999988863 233222 3467888873 23346888887753
No 343
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=39.53 E-value=1.3e+02 Score=20.88 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=21.1
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHH----hhC---CCcEEEEECCCC
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTF----EVN---RVVTDERDVSLH 111 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL----~~~---gV~~~erDVs~d 111 (218)
++.|..+ +|+.|......| +.+ ++.+.-++++.+
T Consensus 23 ll~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 23 LVNFWAS------WCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred EEEeecc------cChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 4555555 599999655444 333 566777777764
No 344
>smart00594 UAS UAS domain.
Probab=39.08 E-value=1.2e+02 Score=23.17 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=32.1
Q ss_pred cEEEEEeecCCCCCCChHHHHH----------HHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRV----------RSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~v----------r~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI 134 (218)
.++||..+= .|++|... +++|+. ..-+-..|+..... .+|...+ + ..++|.+.|
T Consensus 29 ~~lv~~~~~-----~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg--~~l~~~~-~-~~~~P~~~~ 92 (122)
T smart00594 29 LLWLYLHSQ-----DSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEG--QRVSQFY-K-LDSFPYVAI 92 (122)
T ss_pred CEEEEEeCC-----CCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhH--HHHHHhc-C-cCCCCEEEE
Confidence 355665552 59999863 334443 23344578776554 3566666 5 778898843
No 345
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=38.80 E-value=91 Score=28.55 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=33.5
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhhC---------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVN---------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~---------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI 134 (218)
.-+|.|+++| |+.|+.....++.. ++.+-.+|++.+. +.. . + ...+|.+++
T Consensus 366 ~vlv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-----~~~-~-~-i~~~Pt~~~ 425 (462)
T TIGR01130 366 DVLVEFYAPW------CGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-----VPP-F-E-VEGFPTIKF 425 (462)
T ss_pred eEEEEEECCC------CHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-----cCC-C-C-ccccCEEEE
Confidence 3456677775 99999877666441 4667888887653 222 3 3 677898854
No 346
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=38.50 E-value=1.4e+02 Score=21.76 Aligned_cols=46 Identities=11% Similarity=-0.013 Sum_probs=24.9
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHH-------hhCCCcEEEEECCCCHHHHHHHH
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTF-------EVNRVVTDERDVSLHGQFLNELK 119 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL-------~~~gV~~~erDVs~d~~~r~eLk 119 (218)
..++||+.+.. .|+.|.....-| +..++.+..+..+...+.++.++
T Consensus 26 k~~vl~f~~~~----~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~ 78 (124)
T PF00578_consen 26 KPVVLFFWPTA----WCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLE 78 (124)
T ss_dssp SEEEEEEESTT----TSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHH
T ss_pred CcEEEEEeCcc----CccccccchhHHHHHhhhhccceEEeeecccccccchhhhhh
Confidence 34555544421 499997544332 34467777777755444433333
No 347
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=38.45 E-value=1.7e+02 Score=22.39 Aligned_cols=44 Identities=16% Similarity=0.052 Sum_probs=28.4
Q ss_pred EEEEEeecCCCCCCChHHHHHH----HH---HhhCCCcEEEEECCCCHHHHHHHHH
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVR----ST---FEVNRVVTDERDVSLHGQFLNELKD 120 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr----~i---L~~~gV~~~erDVs~d~~~r~eLk~ 120 (218)
||.|..+. .|+.|..-. ++ +...++.+..+.+..+...++.+.+
T Consensus 32 vv~f~~~~-----~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~ 82 (146)
T PF08534_consen 32 VVNFWASA-----WCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK 82 (146)
T ss_dssp EEEEESTT-----TSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH
T ss_pred EEEEEccC-----CCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh
Confidence 44555551 399998544 22 3456788888888888775555544
No 348
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=38.25 E-value=28 Score=39.20 Aligned_cols=54 Identities=26% Similarity=0.445 Sum_probs=31.9
Q ss_pred EEecchhhHhHHHhCcHHHHHhhhhhhc---ccCCcCCCCCCCcce---------eeCCCCCCCcee
Q 027825 138 YVGGVDELTELNESGKLGRMLRSARVEM---GIGRQACEGCGGARF---------VPCFDCGGSCKV 192 (218)
Q Consensus 138 ~IGG~del~~l~e~G~L~~lL~~~~~~~---~~~~~~C~~Cgg~rf---------v~C~~C~Gs~k~ 192 (218)
|+|=+|++++|...=...+... ++... ..+.+.|+.|.|.+. ++|+.|+|.+..
T Consensus 687 Y~g~fd~IR~lFA~~~~ak~~g-~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 687 YIKAFDDLRELFAEQPRSKRLG-LTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred ehhhhHHHHHHHhhChHHHHcC-CCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 4445667776654433333221 21110 114678999999875 589999997654
No 349
>PRK00420 hypothetical protein; Validated
Probab=38.16 E-value=41 Score=26.53 Aligned_cols=12 Identities=33% Similarity=0.750 Sum_probs=8.3
Q ss_pred CcCCCCCCCcce
Q 027825 169 RQACEGCGGARF 180 (218)
Q Consensus 169 ~~~C~~Cgg~rf 180 (218)
...|+.||..-|
T Consensus 23 ~~~CP~Cg~pLf 34 (112)
T PRK00420 23 SKHCPVCGLPLF 34 (112)
T ss_pred cCCCCCCCCcce
Confidence 467888886554
No 350
>PLN02189 cellulose synthase
Probab=38.14 E-value=18 Score=38.43 Aligned_cols=39 Identities=36% Similarity=0.769 Sum_probs=26.6
Q ss_pred CCcCCCCCCCc--------ceeeCCCCCCC----ceeeecCCceeccCCcC
Q 027825 168 GRQACEGCGGA--------RFVPCFDCGGS----CKVVLANGDKQRCGVCN 206 (218)
Q Consensus 168 ~~~~C~~Cgg~--------rfv~C~~C~Gs----~k~~~~~~~~~rC~~Cn 206 (218)
....|.-||+. -||.|..|+=. |--+.++++...||.|+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCk 83 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCK 83 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccC
Confidence 46789999987 79999998533 33334445566666665
No 351
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=37.96 E-value=94 Score=25.71 Aligned_cols=25 Identities=4% Similarity=0.042 Sum_probs=15.1
Q ss_pred CChHHHHHHHHH----hhCCCcEEEEECC
Q 027825 85 TYEDCNRVRSTF----EVNRVVTDERDVS 109 (218)
Q Consensus 85 tc~~C~~vr~iL----~~~gV~~~erDVs 109 (218)
+|+.|++....| +..++.+.-+..+
T Consensus 85 wCp~C~~~lp~l~~~~~~~~~~vv~Is~~ 113 (189)
T TIGR02661 85 SCPVCDKLFPIIKSIARAEETDVVMISDG 113 (189)
T ss_pred CChhHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 699998754433 4456665555433
No 352
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=37.94 E-value=22 Score=23.26 Aligned_cols=26 Identities=23% Similarity=0.638 Sum_probs=13.4
Q ss_pred CCCCCCCceeee--cCCceeccCCcCcC
Q 027825 183 CFDCGGSCKVVL--ANGDKQRCGVCNEN 208 (218)
Q Consensus 183 C~~C~Gs~k~~~--~~~~~~rC~~Cnen 208 (218)
|.+|+-.--++. .+.....||.|...
T Consensus 8 C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~ 35 (52)
T TIGR02605 8 CTACGHRFEVLQKMSDDPLATCPECGGE 35 (52)
T ss_pred eCCCCCEeEEEEecCCCCCCCCCCCCCC
Confidence 555554323322 12345678888863
No 353
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=37.36 E-value=95 Score=25.17 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=16.9
Q ss_pred cccccEEEECCEE-EecchhhHh
Q 027825 126 TVTVPRVFIKGRY-VGGVDELTE 147 (218)
Q Consensus 126 ~~tvPqVFI~G~~-IGG~del~~ 147 (218)
...+|.++|+|++ +.|+.....
T Consensus 173 v~G~Pt~vv~g~~~~~G~~~~~~ 195 (201)
T cd03024 173 ISGVPFFVFNGKYAVSGAQPPEV 195 (201)
T ss_pred CCcCCEEEECCeEeecCCCCHHH
Confidence 7789999999885 577765543
No 354
>PTZ00102 disulphide isomerase; Provisional
Probab=37.27 E-value=55 Score=30.52 Aligned_cols=51 Identities=4% Similarity=0.137 Sum_probs=31.6
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhC--------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN--------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF 133 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~--------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF 133 (218)
-+|.|+++| |+.|+.....|+.. .+.+-.+|.+.+... .+.. + ...+|.++
T Consensus 378 vlv~f~a~w------C~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~----~~~~-~-v~~~Pt~~ 436 (477)
T PTZ00102 378 VLLEIYAPW------CGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETP----LEEF-S-WSAFPTIL 436 (477)
T ss_pred EEEEEECCC------CHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccc----hhcC-C-CcccCeEE
Confidence 345555564 99999888777543 245667787765432 2223 3 66788874
No 355
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=37.03 E-value=1.8e+02 Score=23.58 Aligned_cols=67 Identities=10% Similarity=-0.005 Sum_probs=37.5
Q ss_pred CCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhC-CC--------cccccEEEECCE
Q 027825 69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLG-GE--------TVTVPRVFIKGR 137 (218)
Q Consensus 69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~-g~--------~~tvPqVFI~G~ 137 (218)
..+++|..|.-...-.....-..+-+.++..||.+..+=|.. .-..+|.++.. ++ ..-.|++||+++
T Consensus 109 ~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~--~~~~~L~~IA~~~~~~~~~~~~~~l~~~~~~~~~ 184 (186)
T cd01480 109 ENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS--QNEEPLSRIACDGKSALYRENFAELLWSFFIDDE 184 (186)
T ss_pred CceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc--cchHHHHHHHcCCcchhhhcchhhhccccccccc
Confidence 345555555521111112234455567889999988887765 23445666652 11 123588888875
No 356
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.66 E-value=25 Score=33.46 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=21.1
Q ss_pred ceeeCCCCCCCceeeecCC-ceeccCCcCcCCccc
Q 027825 179 RFVPCFDCGGSCKVVLANG-DKQRCGVCNENGLVH 212 (218)
Q Consensus 179 rfv~C~~C~Gs~k~~~~~~-~~~rC~~CnenGl~~ 212 (218)
....|+.|+=|+.+-.-+. .-..||+||||-|..
T Consensus 226 ~l~~C~~C~~s~n~e~~~~sk~~~Cp~C~~~~L~~ 260 (457)
T KOG2324|consen 226 TLMSCPSCGYSKNSEDLDLSKIASCPKCNEGRLTK 260 (457)
T ss_pred ceeecCcCCccCchhhhcCCccccCCcccCCCccc
Confidence 4456777775544422122 247899999987754
No 357
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=36.46 E-value=15 Score=34.64 Aligned_cols=34 Identities=26% Similarity=0.649 Sum_probs=25.0
Q ss_pred CcCCCCCCC------cceeeCCCCCCCceeeecCCceecc
Q 027825 169 RQACEGCGG------ARFVPCFDCGGSCKVVLANGDKQRC 202 (218)
Q Consensus 169 ~~~C~~Cgg------~rfv~C~~C~Gs~k~~~~~~~~~rC 202 (218)
+.-|..||+ ++.+.|..|.|=-|..+.|...-+|
T Consensus 15 ~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC 54 (475)
T KOG4218|consen 15 GELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTC 54 (475)
T ss_pred ccccccccCccccceeeeeehhhhhhHHHHHhhcCcceec
Confidence 567999997 5789999999987766655433333
No 358
>PF03691 UPF0167: Uncharacterised protein family (UPF0167); InterPro: IPR005363 The proteins in this family are about 200 amino acids long and each contain 3 CXXC motifs.
Probab=36.07 E-value=45 Score=28.28 Aligned_cols=89 Identities=21% Similarity=0.168 Sum_probs=56.2
Q ss_pred CCCcEEEEEeecC---CCCCCChHHHHHHHHHhhCCCcE-EEEE---CCCCHHHHHHHHHHhCCCcccc-----------
Q 027825 68 GSDGVVIYTTSLR---GVRRTYEDCNRVRSTFEVNRVVT-DERD---VSLHGQFLNELKDLLGGETVTV----------- 129 (218)
Q Consensus 68 ~~~kVVlYttsl~---giR~tc~~C~~vr~iL~~~gV~~-~erD---Vs~d~~~r~eLk~~~~g~~~tv----------- 129 (218)
+..+-.+|+.+.= -|...||+|..==+.-+++.-.| +..+ +..+.+..+||-.+++| ..+.
T Consensus 31 gk~~~~~Y~~~~Y~~~dv~~lCPwCIAdG~AA~kfdg~F~d~~~~~~~~~~~~~~~El~~RTPG-y~sWQqe~Wl~hC~D 109 (176)
T PF03691_consen 31 GKARGYYYTGPFYSEEDVEYLCPWCIADGSAAKKFDGEFQDDADLEGVGIDPEKLEELFHRTPG-YSSWQQEYWLAHCDD 109 (176)
T ss_pred CCCceeEecCCceecCCccccCHhHhcCcHhHHhcCeEeecchhcccccCCHHHHHHHHhcCCC-CcccccchhhhhcCC
Confidence 4445556665532 34556999987666666655443 2233 33678999999999976 4443
Q ss_pred cEEEECCEEEecchhhHhHHHhCcHHHHHhhhh
Q 027825 130 PRVFIKGRYVGGVDELTELNESGKLGRMLRSAR 162 (218)
Q Consensus 130 PqVFI~G~~IGG~del~~l~e~G~L~~lL~~~~ 162 (218)
+.-||+-. |.+||.+| .+.|+++++...
T Consensus 110 ~CaFlG~v---g~~El~~~--~~~~~~~~~~~~ 137 (176)
T PF03691_consen 110 YCAFLGYV---GWEELKAM--PEELEEVLEDYE 137 (176)
T ss_pred HHHhcCCC---CHHHHHHH--HHHHHHHHHHHh
Confidence 33455442 67788777 466777777665
No 359
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=35.90 E-value=23 Score=33.11 Aligned_cols=14 Identities=29% Similarity=0.712 Sum_probs=8.8
Q ss_pred CceeccCCcCcCCc
Q 027825 197 GDKQRCGVCNENGL 210 (218)
Q Consensus 197 ~~~~rC~~CnenGl 210 (218)
++...|..|.-.|-
T Consensus 254 rG~k~C~TC~gtgs 267 (406)
T KOG2813|consen 254 RGKKPCTTCSGTGS 267 (406)
T ss_pred CCCcccccccCccc
Confidence 35667777766553
No 360
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=35.85 E-value=37 Score=26.40 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=14.3
Q ss_pred CCcCCCCCCC-----cceeeCCCCCCCc
Q 027825 168 GRQACEGCGG-----ARFVPCFDCGGSC 190 (218)
Q Consensus 168 ~~~~C~~Cgg-----~rfv~C~~C~Gs~ 190 (218)
....|..||. ..+..|+.|++..
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 69 AQAWCWDCSQVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred cEEEcccCCCEEecCCcCccCcCCCCCC
Confidence 3567888874 2344477777553
No 361
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=35.78 E-value=15 Score=32.52 Aligned_cols=19 Identities=53% Similarity=1.358 Sum_probs=16.1
Q ss_pred eeccCCcCc--------CCcccCCCCC
Q 027825 199 KQRCGVCNE--------NGLVHCPACS 217 (218)
Q Consensus 199 ~~rC~~Cne--------nGl~~C~~C~ 217 (218)
.++|.+||| |.|.|||.|.
T Consensus 170 RV~CgHC~~tFLfnt~tnaLArCPHCr 196 (275)
T KOG4684|consen 170 RVKCGHCNETFLFNTLTNALARCPHCR 196 (275)
T ss_pred EEEecCccceeehhhHHHHHhcCCccc
Confidence 688999987 6888999984
No 362
>KOG2767 consensus Translation initiation factor 5 (eIF-5) [Translation, ribosomal structure and biogenesis]
Probab=35.77 E-value=34 Score=32.28 Aligned_cols=57 Identities=23% Similarity=0.464 Sum_probs=38.5
Q ss_pred CCEEEecchhhHhHHHhCcHHHHHhhhhhhcccCCcCCCCCCCcceeeCCCCCCCc-eeeecC--CceeccCCcCcCCcc
Q 027825 135 KGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSC-KVVLAN--GDKQRCGVCNENGLV 211 (218)
Q Consensus 135 ~G~~IGG~del~~l~e~G~L~~lL~~~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~-k~~~~~--~~~~rC~~CnenGl~ 211 (218)
+|+||..- .|+.++|+.+|..|=. .||.|..|.-.- ..+... .-...|-+|---|.+
T Consensus 71 n~ryiVNG-----~Hd~~KLqdlLdgFIk---------------KFVlC~~C~NPETel~itk~q~i~~~CkACG~r~~~ 130 (400)
T KOG2767|consen 71 NGRYIVNG-----AHEASKLQDLLDGFIK---------------KFVLCPSCENPETELIITKKQTISLKCKACGFRSDM 130 (400)
T ss_pred CCeeeecc-----cccHHHHHHHHHHHHH---------------HheeCcCCCCCceeEEecccchhhhHHHHcCCcccc
Confidence 56665333 3788999999987754 588888887763 333332 237889888776655
No 363
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=35.49 E-value=23 Score=21.73 Aligned_cols=24 Identities=38% Similarity=0.913 Sum_probs=12.6
Q ss_pred CCCCCCCceeeecCCceeccCCcCcC
Q 027825 183 CFDCGGSCKVVLANGDKQRCGVCNEN 208 (218)
Q Consensus 183 C~~C~Gs~k~~~~~~~~~rC~~Cnen 208 (218)
|..|+-.-. +.....+||+.|.-.
T Consensus 3 C~~Cg~~~~--~~~~~~irC~~CG~R 26 (32)
T PF03604_consen 3 CGECGAEVE--LKPGDPIRCPECGHR 26 (32)
T ss_dssp ESSSSSSE---BSTSSTSSBSSSS-S
T ss_pred CCcCCCeeE--cCCCCcEECCcCCCe
Confidence 555554433 333456788887543
No 364
>COG4332 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.29 E-value=27 Score=30.04 Aligned_cols=37 Identities=30% Similarity=0.706 Sum_probs=26.3
Q ss_pred CCcCCCCCCCcceeeCCCCCCCceeeecCCc------eeccCCcCcC
Q 027825 168 GRQACEGCGGARFVPCFDCGGSCKVVLANGD------KQRCGVCNEN 208 (218)
Q Consensus 168 ~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~------~~rC~~Cnen 208 (218)
+...|.+||+.+-- .|+|.-++ .+++. --||..||-.
T Consensus 16 ~~k~C~~Cg~kr~f---~cSg~fRv-NAq~K~LDvWlIYkC~~Cd~t 58 (203)
T COG4332 16 PAKRCNSCGVKRAF---TCSGKFRV-NAQGKVLDVWLIYKCTHCDYT 58 (203)
T ss_pred hhhhCcccCCccee---eecCcEEE-cCCCcEEEEEEEEEeeccCCc
Confidence 45679999999875 45677665 44442 5799999864
No 365
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=35.26 E-value=39 Score=23.69 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=12.6
Q ss_pred EEECCEEEecchhhH
Q 027825 132 VFIKGRYVGGVDELT 146 (218)
Q Consensus 132 VFI~G~~IGG~del~ 146 (218)
||+||..||=.++-.
T Consensus 1 VFlNG~~iG~~~~p~ 15 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPE 15 (63)
T ss_dssp EEETTEEEEEESSHH
T ss_pred CEECCEEEEEEcCHH
Confidence 799999999887643
No 366
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=35.17 E-value=43 Score=21.60 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=13.6
Q ss_pred ceeeCCCCCCC-cee-eecC--CceeccCCcC
Q 027825 179 RFVPCFDCGGS-CKV-VLAN--GDKQRCGVCN 206 (218)
Q Consensus 179 rfv~C~~C~Gs-~k~-~~~~--~~~~rC~~Cn 206 (218)
+-.||+.|.|+ ++. +.++ .+.--|..|.
T Consensus 2 ~h~pCP~CGG~DrFri~~d~~~~G~~~C~~C~ 33 (40)
T PF08273_consen 2 KHGPCPICGGKDRFRIFDDKDGRGTWICRQCG 33 (40)
T ss_dssp EEE--TTTT-TTTEEEETT----S-EEETTTT
T ss_pred CCCCCCCCcCccccccCcCcccCCCEECCCCC
Confidence 45789999998 333 3332 2456677773
No 367
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=35.06 E-value=27 Score=23.48 Aligned_cols=23 Identities=30% Similarity=0.774 Sum_probs=13.3
Q ss_pred eCCCCCCCceeeecCCceeccCCcC
Q 027825 182 PCFDCGGSCKVVLANGDKQRCGVCN 206 (218)
Q Consensus 182 ~C~~C~Gs~k~~~~~~~~~rC~~Cn 206 (218)
-|+.|+.. .+..+.....|+.|.
T Consensus 22 fCP~Cg~~--~m~~~~~r~~C~~Cg 44 (50)
T PRK00432 22 FCPRCGSG--FMAEHLDRWHCGKCG 44 (50)
T ss_pred cCcCCCcc--hheccCCcEECCCcC
Confidence 46666443 344445677787774
No 368
>PRK04023 DNA polymerase II large subunit; Validated
Probab=34.95 E-value=26 Score=37.20 Aligned_cols=15 Identities=20% Similarity=0.076 Sum_probs=10.8
Q ss_pred HHHHHHhhCCCcEEE
Q 027825 91 RVRSTFEVNRVVTDE 105 (218)
Q Consensus 91 ~vr~iL~~~gV~~~e 105 (218)
.+|.+|+.++|....
T Consensus 506 ~~k~~LE~L~v~H~~ 520 (1121)
T PRK04023 506 GVKRILEKLGVPHRV 520 (1121)
T ss_pred HHHHHHHHhCCceEe
Confidence 678888888876443
No 369
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=34.53 E-value=1.6e+02 Score=22.95 Aligned_cols=43 Identities=12% Similarity=0.058 Sum_probs=23.9
Q ss_pred cEEEEEee-cCCCCCCChHHHH-------HHHHHhhCCCcEEEEECCCCHHHHHHH
Q 027825 71 GVVIYTTS-LRGVRRTYEDCNR-------VRSTFEVNRVVTDERDVSLHGQFLNEL 118 (218)
Q Consensus 71 kVVlYtts-l~giR~tc~~C~~-------vr~iL~~~gV~~~erDVs~d~~~r~eL 118 (218)
.++||+.. + .|+.|.. ..+-|...++.+.-+.++...+.++.+
T Consensus 32 ~~ll~f~~~~-----~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~ 82 (154)
T PRK09437 32 RVLVYFYPKA-----MTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFA 82 (154)
T ss_pred CEEEEEECCC-----CCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 46666543 2 3788853 444455667777666665444444333
No 370
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=34.28 E-value=1.2e+02 Score=24.47 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=45.1
Q ss_pred ccCccccCCCCCCCCCCCcEEEEEeecCCCCCCChHHHHHHHH----HhhCC---CcEEEEECCCCHHHHHHHHHHhCCC
Q 027825 53 IRDLLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRST----FEVNR---VVTDERDVSLHGQFLNELKDLLGGE 125 (218)
Q Consensus 53 ~~~~~~~~~~~~pp~~~~kVVlYttsl~giR~tc~~C~~vr~i----L~~~g---V~~~erDVs~d~~~r~eLk~~~~g~ 125 (218)
+.+.+..|... .+..|||.++= +. .++....+--+ .++++ +.+-.+|++.+++ |.... |
T Consensus 23 ~~~~~~~~~~~-----~~~~vl~~~gd-p~--r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~----LA~~f-g- 88 (132)
T PRK11509 23 SESRLDDWLTQ-----APDGVVLLSSD-PK--RTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA----IGDRF-G- 88 (132)
T ss_pred ccccHHHHHhC-----CCcEEEEeCCC-CC--cCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH----HHHHc-C-
Confidence 34555666632 22355555541 22 34555444333 34433 6688888887754 55555 6
Q ss_pred cccccEE--EECCEEEecch
Q 027825 126 TVTVPRV--FIKGRYVGGVD 143 (218)
Q Consensus 126 ~~tvPqV--FI~G~~IGG~d 143 (218)
..++|.+ |-||+++|-..
T Consensus 89 V~siPTLl~FkdGk~v~~i~ 108 (132)
T PRK11509 89 VFRFPATLVFTGGNYRGVLN 108 (132)
T ss_pred CccCCEEEEEECCEEEEEEe
Confidence 8889987 67999887553
No 371
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=34.19 E-value=2.6e+02 Score=23.72 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=30.5
Q ss_pred CCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCc-EEEEECC-----CCHHHHHHHH
Q 027825 69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVV-TDERDVS-----LHGQFLNELK 119 (218)
Q Consensus 69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~-~~erDVs-----~d~~~r~eLk 119 (218)
..+|++-.|.. +. ...++....++|+++|+. ....++. .++++.+.|.
T Consensus 29 ~~~i~~iptA~-~~--~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~ 82 (217)
T cd03145 29 GARIVVIPAAS-EE--PAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLR 82 (217)
T ss_pred CCcEEEEeCCC-cC--hhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHH
Confidence 34566555553 21 367789999999999985 5666665 3444444443
No 372
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=33.87 E-value=82 Score=25.95 Aligned_cols=38 Identities=21% Similarity=0.107 Sum_probs=27.0
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG 112 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~ 112 (218)
+|.|.+-|.+ --+.+++++.+|+.+||.|+.+=++.|.
T Consensus 2 ~V~Ii~gs~S----D~~~~~~a~~~L~~~gi~~~~~V~saHR 39 (150)
T PF00731_consen 2 KVAIIMGSTS----DLPIAEEAAKTLEEFGIPYEVRVASAHR 39 (150)
T ss_dssp EEEEEESSGG----GHHHHHHHHHHHHHTT-EEEEEE--TTT
T ss_pred eEEEEeCCHH----HHHHHHHHHHHHHHcCCCEEEEEEeccC
Confidence 3555555532 4678999999999999999998888764
No 373
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=33.78 E-value=25 Score=31.33 Aligned_cols=59 Identities=8% Similarity=0.081 Sum_probs=37.1
Q ss_pred CCCcEEEEEeecCCCCCCChHHHHHHHHH----hhCCCcEEEEECCC--CHHHH-----HHHHHHhCCCcccccEEEE
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTF----EVNRVVTDERDVSL--HGQFL-----NELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL----~~~gV~~~erDVs~--d~~~r-----~eLk~~~~g~~~tvPqVFI 134 (218)
....+++|+.+ .|++|.+.--+| +.+|+.+.-+.++- .+++. ....+.+ | ...+|.+|+
T Consensus 143 ~~~GL~fFy~s------~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l-~-v~~~PAl~L 212 (248)
T PRK13703 143 EHYGLMFFYRG------QDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRL-G-VKYFPALML 212 (248)
T ss_pred hcceEEEEECC------CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhc-C-CcccceEEE
Confidence 34568888888 799999765555 55788776666642 11110 1122344 5 678899986
No 374
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.75 E-value=29 Score=33.71 Aligned_cols=34 Identities=21% Similarity=0.584 Sum_probs=18.5
Q ss_pred CcCCCCCC-------CcceeeCCCCCCCceeeecCCceeccCCcCcC
Q 027825 169 RQACEGCG-------GARFVPCFDCGGSCKVVLANGDKQRCGVCNEN 208 (218)
Q Consensus 169 ~~~C~~Cg-------g~rfv~C~~C~Gs~k~~~~~~~~~rC~~Cnen 208 (218)
...|..|. ..+.+.|..|+-+... ..+||.|...
T Consensus 222 ~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~------~~~Cp~C~s~ 262 (505)
T TIGR00595 222 ILCCPNCDVSLTYHKKEGKLRCHYCGYQEPI------PKTCPQCGSE 262 (505)
T ss_pred ccCCCCCCCceEEecCCCeEEcCCCcCcCCC------CCCCCCCCCC
Confidence 44566665 3344566666644332 3466666554
No 375
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=33.70 E-value=1.9e+02 Score=21.75 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=23.2
Q ss_pred cEEEEEe-ecCCCCCCChHHHHH-------HHHHhhCCCcEEEEECCCCHHHHHHH
Q 027825 71 GVVIYTT-SLRGVRRTYEDCNRV-------RSTFEVNRVVTDERDVSLHGQFLNEL 118 (218)
Q Consensus 71 kVVlYtt-sl~giR~tc~~C~~v-------r~iL~~~gV~~~erDVs~d~~~r~eL 118 (218)
.++|++. ++ .|+.|... .+-|...++.+.-+.++.....++.+
T Consensus 25 ~~ll~f~~~~-----~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~ 75 (140)
T cd03017 25 PVVLYFYPKD-----DTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFA 75 (140)
T ss_pred cEEEEEeCCC-----CCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 3555554 32 48889753 23345557776666665444444333
No 376
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=33.59 E-value=1.5e+02 Score=29.20 Aligned_cols=14 Identities=14% Similarity=-0.099 Sum_probs=10.6
Q ss_pred CChHHHHHHHHHhh
Q 027825 85 TYEDCNRVRSTFEV 98 (218)
Q Consensus 85 tc~~C~~vr~iL~~ 98 (218)
.|+.|+.....|++
T Consensus 67 WCppCk~emP~L~e 80 (521)
T PRK14018 67 WCPLCLSELGETEK 80 (521)
T ss_pred CCHHHHHHHHHHHH
Confidence 59999997666643
No 377
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=33.06 E-value=43 Score=26.47 Aligned_cols=7 Identities=43% Similarity=1.298 Sum_probs=3.5
Q ss_pred CcCCCCCC
Q 027825 169 RQACEGCG 176 (218)
Q Consensus 169 ~~~C~~Cg 176 (218)
...| .||
T Consensus 70 ~~~C-~Cg 76 (124)
T PRK00762 70 EIEC-ECG 76 (124)
T ss_pred eEEe-eCc
Confidence 3445 555
No 378
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=32.98 E-value=24 Score=31.73 Aligned_cols=19 Identities=42% Similarity=1.142 Sum_probs=12.0
Q ss_pred eeccCCcCc---------CCcccCCCCC
Q 027825 199 KQRCGVCNE---------NGLVHCPACS 217 (218)
Q Consensus 199 ~~rC~~Cne---------nGl~~C~~C~ 217 (218)
.++|.+|++ |.|.|||.|.
T Consensus 157 rv~CghC~~~Fl~~~~~~~tlARCPHCr 184 (256)
T PF09788_consen 157 RVICGHCSNTFLFNTLTSNTLARCPHCR 184 (256)
T ss_pred eEECCCCCCcEeccCCCCCccccCCCCc
Confidence 456666653 5677777774
No 379
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.81 E-value=49 Score=28.06 Aligned_cols=71 Identities=13% Similarity=0.218 Sum_probs=39.6
Q ss_pred ccCCCCCCCCCCCcEEEEEeecCCCCCCChHHHHHHHHHhhC---------CCcEEEEECCCCH------------HHHH
Q 027825 58 SDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN---------RVVTDERDVSLHG------------QFLN 116 (218)
Q Consensus 58 ~~~~~~~pp~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~---------gV~~~erDVs~d~------------~~r~ 116 (218)
.++..+- |.+.--+++|.+. +|++|.+.+.-+... ++.+.++|++... .--+
T Consensus 33 ~d~ksi~-~~~Kylllmfes~------~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ 105 (182)
T COG2143 33 DDNKSIS-PNDKYLLLMFESN------GCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTE 105 (182)
T ss_pred HHHHhcC-ccCcEEEEEEcCC------CChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHH
Confidence 3444333 3333446677776 799999877644221 1334555554221 1135
Q ss_pred HHHHHhCCCcccccEE-EECCE
Q 027825 117 ELKDLLGGETVTVPRV-FIKGR 137 (218)
Q Consensus 117 eLk~~~~g~~~tvPqV-FI~G~ 137 (218)
||.+.. + .++.|.+ |.|++
T Consensus 106 ELa~kf-~-vrstPtfvFfdk~ 125 (182)
T COG2143 106 ELAQKF-A-VRSTPTFVFFDKT 125 (182)
T ss_pred HHHHHh-c-cccCceEEEEcCC
Confidence 777777 5 7777776 55553
No 380
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=32.33 E-value=1e+02 Score=31.23 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=49.9
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECC----CCHHHHHHHHHHhCCCcccccEEEECCEEEecchh-
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVS----LHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDE- 144 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs----~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~de- 144 (218)
.+|.|.+++. ....|.++-+.|++.||..+.+|+. .|.+....+.+. .-..|.+.+..+||+-.
T Consensus 545 ~dvtIva~G~-----~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~------~~~vVt~Ee~~~GG~Gs~ 613 (641)
T PLN02234 545 ERVALLGYGS-----AVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKS------HEVLITVEEGSIGGFGSH 613 (641)
T ss_pred CCEEEEEecH-----HHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHh------CCEEEEECCCCCCcHHHH
Confidence 3577777774 4678999999999999999999985 455544333322 11345566666798844
Q ss_pred -hHhHHHhCcHHHHH
Q 027825 145 -LTELNESGKLGRML 158 (218)
Q Consensus 145 -l~~l~e~G~L~~lL 158 (218)
...|.++|-+++.+
T Consensus 614 Va~~l~e~~~~~~~~ 628 (641)
T PLN02234 614 VVQFLALDGLLDGKL 628 (641)
T ss_pred HHHHHHHcCCCCCCc
Confidence 23344555544443
No 381
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=31.82 E-value=33 Score=21.68 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=15.8
Q ss_pred eeCCCCCCCceeeec------CC---ceeccCCcCc
Q 027825 181 VPCFDCGGSCKVVLA------NG---DKQRCGVCNE 207 (218)
Q Consensus 181 v~C~~C~Gs~k~~~~------~~---~~~rC~~Cne 207 (218)
+.|+.|+...-++.. ++ .+-+|.+|+.
T Consensus 1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~ 36 (39)
T PF01096_consen 1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGH 36 (39)
T ss_dssp S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTE
T ss_pred CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCC
Confidence 368888877666542 22 2888999875
No 382
>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing. It also plays an essential role in several cellular processes in DNA metabolism including replication, recombination and repair of DNA []. Replication factor-A protein is also known as Replication protein A 70 kDa DNA-binding subunit. This entry is found at the C terminus of Replication factor A.; PDB: 1L1O_F 3U50_C.
Probab=31.77 E-value=34 Score=27.14 Aligned_cols=29 Identities=28% Similarity=0.580 Sum_probs=18.4
Q ss_pred cceeeCC--CCCCCceeeecCCceeccCCcCcC
Q 027825 178 ARFVPCF--DCGGSCKVVLANGDKQRCGVCNEN 208 (218)
Q Consensus 178 ~rfv~C~--~C~Gs~k~~~~~~~~~rC~~Cnen 208 (218)
.-+.-|+ .|+. |+.....+.-+|+.|+.+
T Consensus 16 ~~Y~aC~~~~C~k--Kv~~~~~~~y~C~~C~~~ 46 (146)
T PF08646_consen 16 WYYPACPNEKCNK--KVTENGDGSYRCEKCNKT 46 (146)
T ss_dssp TEEEE-TSTTTS---B-EEETTTEEEETTTTEE
T ss_pred cEECCCCCccCCC--EeecCCCcEEECCCCCCc
Confidence 4567788 8884 454444467899999876
No 383
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=31.20 E-value=2.1e+02 Score=20.76 Aligned_cols=47 Identities=9% Similarity=0.008 Sum_probs=37.3
Q ss_pred CCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825 69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL 122 (218)
Q Consensus 69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~ 122 (218)
.++++||+.+ ...+..+...|+..+..+....=+++...+.++.+..
T Consensus 28 ~~~~lvf~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 74 (131)
T cd00079 28 GGKVLIFCPS-------KKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDF 74 (131)
T ss_pred CCcEEEEeCc-------HHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHH
Confidence 4679999888 5789999999998888888887777777677666554
No 384
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=31.03 E-value=1.7e+02 Score=23.85 Aligned_cols=67 Identities=15% Similarity=0.098 Sum_probs=37.7
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhhC--CCcEEEEECCCCHHHHHHHHHHhCCCccccc--EEEE-CCEEEecchh
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVN--RVVTDERDVSLHGQFLNELKDLLGGETVTVP--RVFI-KGRYVGGVDE 144 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~--gV~~~erDVs~d~~~r~eLk~~~~g~~~tvP--qVFI-~G~~IGG~de 144 (218)
..||+|-.. |+.|.....+|..+ +-.|...++..... ..+.+.. |.....+ .+|+ +|+..-|.|.
T Consensus 9 ~~vvlyDG~-------C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g--~~~l~~~-~l~~~~~~s~~~~~~g~~~~~sdA 78 (137)
T COG3011 9 DLVVLYDGV-------CPLCDGWVRFLIRRDQGGRIRFAALQSEPG--QALLEAA-GLDPEDVDSVLLVEAGQLLVGSDA 78 (137)
T ss_pred CEEEEECCc-------chhHHHHHHHHHHhccCCcEEEEeccCchh--hhHHhhc-CCChhhhheeeEecCCceEeccHH
Confidence 446666665 99999988888775 44466666643322 3343444 3233322 2344 4455566665
Q ss_pred hH
Q 027825 145 LT 146 (218)
Q Consensus 145 l~ 146 (218)
+.
T Consensus 79 ~~ 80 (137)
T COG3011 79 AI 80 (137)
T ss_pred HH
Confidence 43
No 385
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=30.96 E-value=50 Score=25.71 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=14.7
Q ss_pred CCcCCCCCCCc-----ceeeCCCCCCCc
Q 027825 168 GRQACEGCGGA-----RFVPCFDCGGSC 190 (218)
Q Consensus 168 ~~~~C~~Cgg~-----rfv~C~~C~Gs~ 190 (218)
....|..||-. .+..|+.|++..
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (115)
T TIGR00100 69 VECECEDCSEEVSPEIDLYRCPKCHGIM 96 (115)
T ss_pred cEEEcccCCCEEecCCcCccCcCCcCCC
Confidence 35678888742 244588887664
No 386
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=30.74 E-value=32 Score=26.67 Aligned_cols=23 Identities=30% Similarity=0.678 Sum_probs=12.1
Q ss_pred CcCCCCCCCcc-----eeeCCCCCCCce
Q 027825 169 RQACEGCGGAR-----FVPCFDCGGSCK 191 (218)
Q Consensus 169 ~~~C~~Cgg~r-----fv~C~~C~Gs~k 191 (218)
...|..||-.- ...|+.|++...
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PF01155_consen 70 RARCRDCGHEFEPDEFDFSCPRCGSPDV 97 (113)
T ss_dssp EEEETTTS-EEECHHCCHH-SSSSSS-E
T ss_pred cEECCCCCCEEecCCCCCCCcCCcCCCc
Confidence 55688886532 245777776643
No 387
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=30.66 E-value=30 Score=24.34 Aligned_cols=18 Identities=33% Similarity=0.728 Sum_probs=9.1
Q ss_pred eeccCCcCcCCcccCCCC
Q 027825 199 KQRCGVCNENGLVHCPAC 216 (218)
Q Consensus 199 ~~rC~~CnenGl~~C~~C 216 (218)
.-.||.|.|--+.||..|
T Consensus 25 ~F~CPnCG~~~I~RC~~C 42 (59)
T PRK14890 25 KFLCPNCGEVIIYRCEKC 42 (59)
T ss_pred EeeCCCCCCeeEeechhH
Confidence 445555555445555444
No 388
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=30.07 E-value=8.4 Score=32.77 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHHhCcHHHHH
Q 027825 87 EDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNESGKLGRML 158 (218)
Q Consensus 87 ~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e~G~L~~lL 158 (218)
..=.+|.++|+..+|+|.-+.-+ .|.+.|++.. ...-||-|||.-.+|++-|-+.-..-+.|...|
T Consensus 73 ~HFeqV~eilq~RnI~~~~i~as---rYa~~l~~~~---rt~EPqrliD~Livga~IEARScERfa~Laphl 138 (203)
T COG4445 73 HHFEQVLEILQARNIPYVPIPAS---RYAKGLLAAV---RTHEPQRLIDKLIVGAYIEARSCERFAALAPHL 138 (203)
T ss_pred HHHHHHHHHHHHcCCccccCCcc---HHHHHHHHHH---HhcCcHHHHHHHHHHHHHhhhhHHHHHhhcccc
Confidence 45568889999999988765443 5667777765 566799999998889987776665555554444
No 389
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=29.96 E-value=83 Score=20.44 Aligned_cols=35 Identities=26% Similarity=0.562 Sum_probs=24.3
Q ss_pred ceeeCCCCCCCceeeecCC--ceeccCCcCcCCcccCC
Q 027825 179 RFVPCFDCGGSCKVVLANG--DKQRCGVCNENGLVHCP 214 (218)
Q Consensus 179 rfv~C~~C~Gs~k~~~~~~--~~~rC~~CnenGl~~C~ 214 (218)
+.+-|..|+.........+ ...+|...++.+. .|+
T Consensus 4 g~l~C~~CG~~m~~~~~~~~~~yy~C~~~~~~~~-~C~ 40 (58)
T PF13408_consen 4 GLLRCGHCGSKMTRRKRKGKYRYYRCSNRRRKGK-GCP 40 (58)
T ss_pred CcEEcccCCcEeEEEECCCCceEEEcCCCcCCCC-CCC
Confidence 5677888887765554432 4789999998886 355
No 390
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=29.79 E-value=30 Score=27.84 Aligned_cols=46 Identities=22% Similarity=0.430 Sum_probs=24.9
Q ss_pred cHHHHHhhhhhhcccCCcCCCCCCCcceeeCCCCCCCceeeecC--------------CceeccCCcCc
Q 027825 153 KLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLAN--------------GDKQRCGVCNE 207 (218)
Q Consensus 153 ~L~~lL~~~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~--------------~~~~rC~~Cne 207 (218)
.|.++++.++..- --..-|.-|..|||.-..+..+ ..|-+|+.|..
T Consensus 73 QL~ev~~~~~l~~---------~~~~~~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~k 132 (147)
T PF01927_consen 73 QLREVLERFGLKL---------RLDPIFSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGK 132 (147)
T ss_pred HHHHHHHHcCCcc---------ccCCCCCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCC
Confidence 3566666655432 0123356677777753332211 23889999974
No 391
>PLN02436 cellulose synthase A
Probab=29.77 E-value=30 Score=36.94 Aligned_cols=39 Identities=31% Similarity=0.717 Sum_probs=26.6
Q ss_pred CCcCCCCCCCc--------ceeeCCCCCCC----ceeeecCCceeccCCcC
Q 027825 168 GRQACEGCGGA--------RFVPCFDCGGS----CKVVLANGDKQRCGVCN 206 (218)
Q Consensus 168 ~~~~C~~Cgg~--------rfv~C~~C~Gs----~k~~~~~~~~~rC~~Cn 206 (218)
....|.-||+. =||.|-.|+=. |--+.++++...||.|+
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqck 85 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCK 85 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccC
Confidence 46789999987 79999999643 22333444566666665
No 392
>PF04236 Transp_Tc5_C: Tc5 transposase C-terminal domain; InterPro: IPR007350 This domain corresponds to a C-terminal cysteine rich region that probably binds to a metal ion and could be DNA-binding. It is found in association with the DDE superfamily (IPR004875 from INTERPRO) and the Tc5 transposase family (IPR004906 from INTERPRO). More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=29.50 E-value=32 Score=24.37 Aligned_cols=20 Identities=25% Similarity=0.901 Sum_probs=13.9
Q ss_pred ceeccCC--cCcCCcccCCCCC
Q 027825 198 DKQRCGV--CNENGLVHCPACS 217 (218)
Q Consensus 198 ~~~rC~~--CnenGl~~C~~C~ 217 (218)
....|.. |++.+.|+|+-|.
T Consensus 26 ~~~~C~~~gC~~~s~I~C~~Ck 47 (63)
T PF04236_consen 26 VAGDCDITGCNNTSFIRCAYCK 47 (63)
T ss_pred CcCcCCCCCCCCcCEEEccccC
Confidence 3566766 7777777777763
No 393
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=29.15 E-value=56 Score=23.09 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=20.9
Q ss_pred eeeCCCCCCCceeeecCCceeccCCcCcC
Q 027825 180 FVPCFDCGGSCKVVLANGDKQRCGVCNEN 208 (218)
Q Consensus 180 fv~C~~C~Gs~k~~~~~~~~~rC~~Cnen 208 (218)
.+.|+.|+|. -++.+....+-|+.|+.-
T Consensus 8 iLaCP~~kg~-L~~~~~~~~L~c~~~~~a 35 (60)
T COG2835 8 ILACPVCKGP-LVYDEEKQELICPRCKLA 35 (60)
T ss_pred eeeccCcCCc-ceEeccCCEEEecccCce
Confidence 4678999998 444556668999999863
No 394
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=29.14 E-value=1.2e+02 Score=20.46 Aligned_cols=36 Identities=14% Similarity=0.053 Sum_probs=25.6
Q ss_pred CChHHHHHHHHHhhC------CCcEEEEECC-CCHHHHHHHHH
Q 027825 85 TYEDCNRVRSTFEVN------RVVTDERDVS-LHGQFLNELKD 120 (218)
Q Consensus 85 tc~~C~~vr~iL~~~------gV~~~erDVs-~d~~~r~eLk~ 120 (218)
.|+.|+.+...|... .+.+..+|+. .+....+.+..
T Consensus 43 ~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (127)
T COG0526 43 WCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV 85 (127)
T ss_pred cCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh
Confidence 499999987666543 3678888886 66666666553
No 395
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=29.01 E-value=1.1e+02 Score=28.84 Aligned_cols=63 Identities=16% Similarity=0.066 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhh-CCCcEEEEECCC-CHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHHhC
Q 027825 87 EDCNRVRSTFEV-NRVVTDERDVSL-HGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNESG 152 (218)
Q Consensus 87 ~~C~~vr~iL~~-~gV~~~erDVs~-d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e~G 152 (218)
.+=.++..+++. .+++|..+|++. |.++.-++-+.. ...+|.++|=.--|...+..++|.+.|
T Consensus 108 ~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~i---k~~~P~~~vIaGNV~T~e~a~~Li~aG 172 (346)
T PRK05096 108 ADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKA---REAWPDKTICAGNVVTGEMVEELILSG 172 (346)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHH---HHhCCCCcEEEecccCHHHHHHHHHcC
Confidence 445677777774 799999999976 445555544444 446677765444566666666666554
No 396
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=28.93 E-value=24 Score=33.44 Aligned_cols=55 Identities=24% Similarity=0.363 Sum_probs=39.9
Q ss_pred CCEEEecchhhHhHHHhCcHHHHHh--hhhhhcccCCcCCCCCCCcce-----------eeCCCCCCCce
Q 027825 135 KGRYVGGVDELTELNESGKLGRMLR--SARVEMGIGRQACEGCGGARF-----------VPCFDCGGSCK 191 (218)
Q Consensus 135 ~G~~IGG~del~~l~e~G~L~~lL~--~~~~~~~~~~~~C~~Cgg~rf-----------v~C~~C~Gs~k 191 (218)
+|..+-|.+++.+..+.|.++.||- .+...+ ....|..||...- -.|+.|++...
T Consensus 286 ~g~avyG~~eV~~ALe~GAVetLLV~d~l~~~r--~~~rc~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (403)
T TIGR03676 286 GGLAAYGEEEVRKALEMGAVDTLLISEDLRKIR--VTFKCPNCGYEEEKTVKPEEGDKSEACPKCGSELE 353 (403)
T ss_pred CCcEEEcHHHHHHHHHhCCCcEEEEEcccccee--EEEEcCCCCcceeeecccccccccccCcccCcccc
Confidence 4788999999999999999999863 333333 3467888987543 13888888744
No 397
>PRK02935 hypothetical protein; Provisional
Probab=28.92 E-value=37 Score=26.71 Aligned_cols=26 Identities=31% Similarity=0.635 Sum_probs=19.7
Q ss_pred eeeCCCCCCCceeeecCCceeccCCcCcC
Q 027825 180 FVPCFDCGGSCKVVLANGDKQRCGVCNEN 208 (218)
Q Consensus 180 fv~C~~C~Gs~k~~~~~~~~~rC~~Cnen 208 (218)
-|.|++|+--.|.. +..-.|..|||.
T Consensus 70 qV~CP~C~K~TKmL---GrvD~CM~C~~P 95 (110)
T PRK02935 70 QVICPSCEKPTKML---GRVDACMHCNQP 95 (110)
T ss_pred eeECCCCCchhhhc---cceeecCcCCCc
Confidence 36799998877773 346789999985
No 398
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=28.83 E-value=27 Score=33.51 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=79.8
Q ss_pred hcccccccccccCccccCCCCCCCCCCCcEEEEEeecCCCCCCChH-HHHHHHHHhhCCCcEEEEECCC---CHHHHHH-
Q 027825 43 EGKQAKYEKLIRDLLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYED-CNRVRSTFEVNRVVTDERDVSL---HGQFLNE- 117 (218)
Q Consensus 43 ~g~~~~~~~~~~~~~~~~~~~~pp~~~~kVVlYttsl~giR~tc~~-C~~vr~iL~~~gV~~~erDVs~---d~~~r~e- 117 (218)
+....+..|.+-|....++ ..||.+.+.|..=... .++. =.++.+++...-+.+...+.+. |..+...
T Consensus 186 d~~~~p~tfdnvD~~~~~~-~i~P~t~~PVl~GIRg------~~p~~l~~a~~~i~~e~~e~~~if~TNqatD~hl~~~~ 258 (421)
T COG1571 186 DKETFPFTFDNVDVQNLYP-LIPPHTPNPVLYGIRG------AVPEVLLKAMSLIKRELVERSAIFETNQATDDHLVDKG 258 (421)
T ss_pred HhccCCeeEeeeecccccc-ccCCCCCCCEEEEEec------CCHHHHHHHHHHHhccCcceEEEEeccchhhhhccccc
Confidence 4444555666666555666 4677777777654444 4554 3355566666666666666643 3333322
Q ss_pred -HHHHhC-------CCcccccEEEECCEEEecch------hhHhHHHhCcHHHHHhhhhhhcccCCcCCCCCC-------
Q 027825 118 -LKDLLG-------GETVTVPRVFIKGRYVGGVD------ELTELNESGKLGRMLRSARVEMGIGRQACEGCG------- 176 (218)
Q Consensus 118 -Lk~~~~-------g~~~tvPqVFI~G~~IGG~d------el~~l~e~G~L~~lL~~~~~~~~~~~~~C~~Cg------- 176 (218)
|.++.+ |....-|+...+|..|.-.. ...+.....++..+...+.... .-..+.+=.
T Consensus 259 ~l~d~~~~~~~~v~g~v~~~p~~ieGghv~v~i~d~~G~I~~~A~eptk~fr~~a~~L~pGD--~i~~~G~~~~~~~n~e 336 (421)
T COG1571 259 KLNDIEDYSKYRVVGRVEAEPRAIEGGHVVVEITDGEGEIGAVAFEPTKEFRELARKLIPGD--EITVYGSVKPGTLNLE 336 (421)
T ss_pred hhhhhhhccceEEEEEEecccEEeeCCEEEEEecCCCceEEEEEecccccchHHHHhcCCCC--EEEEecCccccceeEE
Confidence 544432 21234588777776654331 1233344455555444332211 111111100
Q ss_pred ----------CcceeeCCCCCCCceeeecCCceeccCCcCc
Q 027825 177 ----------GARFVPCFDCGGSCKVVLANGDKQRCGVCNE 207 (218)
Q Consensus 177 ----------g~rfv~C~~C~Gs~k~~~~~~~~~rC~~Cne 207 (218)
-..--.|+.|+|+.||-=.+ -.||+.|-.
T Consensus 337 k~~v~~l~~~~~~~p~Cp~Cg~~m~S~G~~--g~rC~kCg~ 375 (421)
T COG1571 337 KFQVLKLARYERVNPVCPRCGGRMKSAGRN--GFRCKKCGT 375 (421)
T ss_pred EEEEEEeeeeEEcCCCCCccCCchhhcCCC--Ccccccccc
Confidence 01123699999999994444 578998864
No 399
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=28.63 E-value=28 Score=24.50 Aligned_cols=19 Identities=32% Similarity=0.948 Sum_probs=13.3
Q ss_pred eeccCCcCcCCcc-cCCCCC
Q 027825 199 KQRCGVCNENGLV-HCPACS 217 (218)
Q Consensus 199 ~~rC~~CnenGl~-~C~~C~ 217 (218)
.++|++|.+--|- .||.|-
T Consensus 5 ~rkC~~cg~YTLke~Cp~CG 24 (59)
T COG2260 5 IRKCPKCGRYTLKEKCPVCG 24 (59)
T ss_pred hhcCcCCCceeecccCCCCC
Confidence 3567777777777 777773
No 400
>KOG3217 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=28.36 E-value=79 Score=26.40 Aligned_cols=71 Identities=23% Similarity=0.258 Sum_probs=45.5
Q ss_pred CCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCc------------EEEEE--CCCCHHHHHHHHHHhC-----------
Q 027825 69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVV------------TDERD--VSLHGQFLNELKDLLG----------- 123 (218)
Q Consensus 69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~------------~~erD--Vs~d~~~r~eLk~~~~----------- 123 (218)
+..+.=|-+.- -|+ .++.++|+.+||. |.+.| +.||++..++|..+.+
T Consensus 44 Sagt~~yh~G~------~PD-~R~~s~lK~hGI~~~H~aRqit~~DF~~FDYI~~MDesN~~dL~~~a~~~~~~~kakV~ 116 (159)
T KOG3217|consen 44 SAGTSGYHTGR------SPD-PRTLSILKKHGIKIDHLARQITTSDFREFDYILAMDESNLRDLLRKASNQPKGSKAKVL 116 (159)
T ss_pred cccccccccCC------CCC-hHHHHHHHHcCCcchhhcccccHhHhhhcceeEEecHHHHHHHHHHhccCCCCcceEEE
Confidence 33445566652 233 3567799999987 55667 4799998888887531
Q ss_pred --CCcccccEEEECCEEEecchhhH
Q 027825 124 --GETVTVPRVFIKGRYVGGVDELT 146 (218)
Q Consensus 124 --g~~~tvPqVFI~G~~IGG~del~ 146 (218)
|.+.+-=+.||++=|-||...+.
T Consensus 117 Llgsy~~~~~~~I~DPyYg~~~~Fe 141 (159)
T KOG3217|consen 117 LLGSYDKNGQKIIEDPYYGGDSKFE 141 (159)
T ss_pred EeeccCCCCCeecCCCCCCccccHH
Confidence 22222237788887777766543
No 401
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=27.84 E-value=30 Score=36.96 Aligned_cols=39 Identities=33% Similarity=0.719 Sum_probs=26.5
Q ss_pred CCcCCCCCCCc--------ceeeCCCCCCC----ceeeecCCceeccCCcC
Q 027825 168 GRQACEGCGGA--------RFVPCFDCGGS----CKVVLANGDKQRCGVCN 206 (218)
Q Consensus 168 ~~~~C~~Cgg~--------rfv~C~~C~Gs----~k~~~~~~~~~rC~~Cn 206 (218)
.+..|.-||+. =||.|-+|.=. |--+.++++..-||.|+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCk 66 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCK 66 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccC
Confidence 46789999987 89999999643 22333445566666665
No 402
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=27.69 E-value=1.6e+02 Score=24.51 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=23.8
Q ss_pred cEEEEEeecCCCCCCChHHHHH-------HHHHhhCCCcEEEEECCCCH
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRV-------RSTFEVNRVVTDERDVSLHG 112 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~v-------r~iL~~~gV~~~erDVs~d~ 112 (218)
-|.+|++.- .|+.|+.- -..+++.+-+|+.+=||.|.
T Consensus 35 vV~lyFsA~-----wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~ 78 (157)
T KOG2501|consen 35 VVGLYFSAH-----WCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR 78 (157)
T ss_pred EEEEEEEEE-----ECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC
Confidence 366777764 69999853 23344445567777777654
No 403
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=27.66 E-value=3.6e+02 Score=22.44 Aligned_cols=80 Identities=20% Similarity=0.187 Sum_probs=48.5
Q ss_pred CCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECC---CCHHHHHHHHHHhCCCcccccEEEECCEEEecchh-
Q 027825 69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVS---LHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDE- 144 (218)
Q Consensus 69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs---~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~de- 144 (218)
..+|++-.|... . ...+....++.|+..|+...+..+. .+++..+.|.+. -.||+.| |....
T Consensus 29 ~~~i~~iptA~~-~--~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~a--------d~I~~~G---G~~~~~ 94 (210)
T cd03129 29 GARVLFIPTASG-D--RDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEA--------DGIFVGG---GNQLRL 94 (210)
T ss_pred CCeEEEEeCCCC-C--hHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhC--------CEEEEcC---CcHHHH
Confidence 455666656532 2 3467888999999999998877764 234444434332 3455555 33322
Q ss_pred hHhHHHhCcHHHHHhhhh
Q 027825 145 LTELNESGKLGRMLRSAR 162 (218)
Q Consensus 145 l~~l~e~G~L~~lL~~~~ 162 (218)
+..|.+.+-++.+++.+.
T Consensus 95 ~~~l~~t~~~~~i~~~~~ 112 (210)
T cd03129 95 LSVLRETPLLDAILKRVA 112 (210)
T ss_pred HHHHHhCChHHHHHHHHH
Confidence 455666667777776654
No 404
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=27.62 E-value=58 Score=26.09 Aligned_cols=11 Identities=18% Similarity=0.549 Sum_probs=7.2
Q ss_pred ceeccCCcCcC
Q 027825 198 DKQRCGVCNEN 208 (218)
Q Consensus 198 ~~~rC~~Cnen 208 (218)
.+.+||.|...
T Consensus 106 ~~~~CP~Cgs~ 116 (135)
T PRK03824 106 AFLKCPKCGSR 116 (135)
T ss_pred cCcCCcCCCCC
Confidence 35678888654
No 405
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=27.26 E-value=21 Score=37.23 Aligned_cols=43 Identities=33% Similarity=0.823 Sum_probs=0.0
Q ss_pred CCcCCCCCCCcce-eeCCCCCCCceeeecCCceeccCCcCcC-CcccCCCC
Q 027825 168 GRQACEGCGGARF-VPCFDCGGSCKVVLANGDKQRCGVCNEN-GLVHCPAC 216 (218)
Q Consensus 168 ~~~~C~~Cgg~rf-v~C~~C~Gs~k~~~~~~~~~rC~~Cnen-Gl~~C~~C 216 (218)
+...|..||-..| ..|+.|++.... ..+||.|+.. .--.||.|
T Consensus 654 ~~r~Cp~Cg~~t~~~~Cp~CG~~T~~------~~~Cp~C~~~~~~~~C~~C 698 (900)
T PF03833_consen 654 GRRRCPKCGKETFYNRCPECGSHTEP------VYVCPDCGIEVEEDECPKC 698 (900)
T ss_dssp ---------------------------------------------------
T ss_pred ecccCcccCCcchhhcCcccCCcccc------ceeccccccccCccccccc
Confidence 3567999987665 568899877443 4667777643 12266666
No 406
>PLN02790 transketolase
Probab=27.20 E-value=1.9e+02 Score=29.05 Aligned_cols=86 Identities=10% Similarity=0.115 Sum_probs=52.3
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHH----HHHHhCCCcccccEEEECCEEEecchhh
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNE----LKDLLGGETVTVPRVFIKGRYVGGVDEL 145 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~e----Lk~~~~g~~~tvPqVFI~G~~IGG~del 145 (218)
.+|+|..+.. .-..+.++.++|++.||....+|+..-.-+-++ .++.. + ...-+.|.|....++|+.+.
T Consensus 541 ~dv~iia~G~-----~v~~Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~-~-~~~~~vvtiE~~~~~G~~~~ 613 (654)
T PLN02790 541 PDLILIGTGS-----ELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVL-P-SSVTARVSVEAGSTFGWEKY 613 (654)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhh-c-cccceEEEecCccchhHHHh
Confidence 5688887774 567899999999999999999998543222222 22333 2 22335566666555654332
Q ss_pred ----------HhHHHhCcHHHHHhhhh
Q 027825 146 ----------TELNESGKLGRMLRSAR 162 (218)
Q Consensus 146 ----------~~l~e~G~L~~lL~~~~ 162 (218)
...-++|..+++++.++
T Consensus 614 ~~~~~~~igvd~Fg~sg~~~~l~~~~G 640 (654)
T PLN02790 614 VGSKGKVIGVDRFGASAPAGILYKEFG 640 (654)
T ss_pred cCCCceEEEeCCCcCcCCHHHHHHHhC
Confidence 12345566666665544
No 407
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=27.13 E-value=52 Score=20.42 Aligned_cols=25 Identities=24% Similarity=0.713 Sum_probs=11.7
Q ss_pred CCCCCCCceeeec---CCceeccCCcCc
Q 027825 183 CFDCGGSCKVVLA---NGDKQRCGVCNE 207 (218)
Q Consensus 183 C~~C~Gs~k~~~~---~~~~~rC~~Cne 207 (218)
|+.|.+.-....- +.....|++|..
T Consensus 3 C~~CG~~l~~~ip~gd~r~R~vC~~Cg~ 30 (34)
T PF14803_consen 3 CPQCGGPLERRIPEGDDRERLVCPACGF 30 (34)
T ss_dssp -TTT--B-EEE--TT-SS-EEEETTTTE
T ss_pred cccccChhhhhcCCCCCccceECCCCCC
Confidence 7777777433322 234788888863
No 408
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=27.00 E-value=1.5e+02 Score=27.30 Aligned_cols=26 Identities=23% Similarity=0.057 Sum_probs=20.0
Q ss_pred ChHHHHHHHHHhhC-----CCcEEEEECCCC
Q 027825 86 YEDCNRVRSTFEVN-----RVVTDERDVSLH 111 (218)
Q Consensus 86 c~~C~~vr~iL~~~-----gV~~~erDVs~d 111 (218)
|..+.+++-+|+.. .+.|.-+|||.+
T Consensus 85 sG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~ 115 (319)
T TIGR03439 85 SGNLRKVGILLEALERQKKSVDYYALDVSRS 115 (319)
T ss_pred CCchHHHHHHHHHHHhcCCCceEEEEECCHH
Confidence 56899999888765 366999999843
No 409
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=26.54 E-value=53 Score=28.22 Aligned_cols=28 Identities=21% Similarity=0.635 Sum_probs=20.8
Q ss_pred CcceeeCCCCCCCceeeecCCceeccCCcCc
Q 027825 177 GARFVPCFDCGGSCKVVLANGDKQRCGVCNE 207 (218)
Q Consensus 177 g~rfv~C~~C~Gs~k~~~~~~~~~rC~~Cne 207 (218)
|.=|..|+.|.+-... .+..++||.|.-
T Consensus 146 GVI~A~CsrC~~~L~~---~~~~l~Cp~Cg~ 173 (188)
T COG1096 146 GVIYARCSRCRAPLVK---KGNMLKCPNCGN 173 (188)
T ss_pred eEEEEEccCCCcceEE---cCcEEECCCCCC
Confidence 6677788888776443 566899999974
No 410
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=26.25 E-value=4e+02 Score=23.35 Aligned_cols=38 Identities=24% Similarity=0.129 Sum_probs=26.6
Q ss_pred CCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCc-EEEEECC
Q 027825 69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVV-TDERDVS 109 (218)
Q Consensus 69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~-~~erDVs 109 (218)
..+|++..|.. + ..=.+....+++|+++|+. +...|+.
T Consensus 28 ~~rI~~iptAS-~--~~~~~~~~~~~~~~~lG~~~v~~l~i~ 66 (250)
T TIGR02069 28 DAIIVIITSAS-E--EPREVGERYITIFSRLGVKEVKILDVR 66 (250)
T ss_pred CceEEEEeCCC-C--ChHHHHHHHHHHHHHcCCceeEEEecC
Confidence 34677666642 1 2235688899999999995 7888885
No 411
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=26.23 E-value=72 Score=22.80 Aligned_cols=28 Identities=29% Similarity=0.621 Sum_probs=15.5
Q ss_pred eeCCCCCCCceeeecCCc--eeccCCcCcC
Q 027825 181 VPCFDCGGSCKVVLANGD--KQRCGVCNEN 208 (218)
Q Consensus 181 v~C~~C~Gs~k~~~~~~~--~~rC~~Cnen 208 (218)
-||+.|..-.-.+...++ ...|..|..-
T Consensus 7 KPCPFCG~~~~~v~~~~g~~~v~C~~CgA~ 36 (64)
T PRK09710 7 KPCPFCGCPSVTVKAISGYYRAKCNGCESR 36 (64)
T ss_pred cCCCCCCCceeEEEecCceEEEEcCCCCcC
Confidence 366666665444444332 5667777654
No 412
>PLN02412 probable glutathione peroxidase
Probab=26.23 E-value=2.3e+02 Score=22.87 Aligned_cols=54 Identities=6% Similarity=-0.042 Sum_probs=26.5
Q ss_pred cEEE-EEeecCCCCCCChHHHHH-------HHHHhhCCCcEEEEECC--------CCHHHHHHHHHHhCCCcccccEEE
Q 027825 71 GVVI-YTTSLRGVRRTYEDCNRV-------RSTFEVNRVVTDERDVS--------LHGQFLNELKDLLGGETVTVPRVF 133 (218)
Q Consensus 71 kVVl-Yttsl~giR~tc~~C~~v-------r~iL~~~gV~~~erDVs--------~d~~~r~eLk~~~~g~~~tvPqVF 133 (218)
.|+| |..+ +|+.|.+- .+-+...|+.+.-+... ...+.++.+.+.. ..++|.+.
T Consensus 31 ~vlv~f~a~------~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~---~~~fpvl~ 100 (167)
T PLN02412 31 VLLIVNVAS------KCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRF---KAEFPIFD 100 (167)
T ss_pred EEEEEEeCC------CCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHcc---CCCCceEe
Confidence 3555 4455 49999852 22233345555554432 1123344443333 45677764
No 413
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=26.12 E-value=37 Score=26.16 Aligned_cols=8 Identities=38% Similarity=1.086 Sum_probs=4.3
Q ss_pred eeeCCCCC
Q 027825 180 FVPCFDCG 187 (218)
Q Consensus 180 fv~C~~C~ 187 (218)
++.|+.|+
T Consensus 21 ~f~CP~Cg 28 (99)
T PRK14892 21 IFECPRCG 28 (99)
T ss_pred EeECCCCC
Confidence 44555555
No 414
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=26.06 E-value=25 Score=24.02 Aligned_cols=8 Identities=25% Similarity=0.924 Sum_probs=4.2
Q ss_pred eeccCCcC
Q 027825 199 KQRCGVCN 206 (218)
Q Consensus 199 ~~rC~~Cn 206 (218)
..+||.|.
T Consensus 24 eIKCpRC~ 31 (51)
T PF10122_consen 24 EIKCPRCK 31 (51)
T ss_pred EEECCCCC
Confidence 45555553
No 415
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=25.54 E-value=35 Score=27.09 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=20.1
Q ss_pred ceeeCCCCCCCceeeecCCceeccCCcCcCC
Q 027825 179 RFVPCFDCGGSCKVVLANGDKQRCGVCNENG 209 (218)
Q Consensus 179 rfv~C~~C~Gs~k~~~~~~~~~rC~~CnenG 209 (218)
--|.|++|+--.|..- ..-+|..|++.-
T Consensus 68 v~V~CP~C~K~TKmLG---r~D~CM~C~~pL 95 (114)
T PF11023_consen 68 VQVECPNCGKQTKMLG---RVDACMHCKEPL 95 (114)
T ss_pred eeeECCCCCChHhhhc---hhhccCcCCCcC
Confidence 4567899987777643 346999999853
No 416
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=25.52 E-value=68 Score=20.33 Aligned_cols=26 Identities=23% Similarity=0.579 Sum_probs=17.1
Q ss_pred eCCCCCCCceeeec------CC---ceeccCCcCc
Q 027825 182 PCFDCGGSCKVVLA------NG---DKQRCGVCNE 207 (218)
Q Consensus 182 ~C~~C~Gs~k~~~~------~~---~~~rC~~Cne 207 (218)
+|+.|+...-++.. ++ .+-.|..|+.
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~ 36 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGH 36 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCC
Confidence 68888766555532 22 2889999874
No 417
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=25.51 E-value=2.6e+02 Score=20.98 Aligned_cols=21 Identities=10% Similarity=0.059 Sum_probs=12.6
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHH
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTF 96 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL 96 (218)
.++||+.+. .|+.|.+....|
T Consensus 25 ~vvl~F~a~-----~C~~C~~~~p~l 45 (126)
T cd03012 25 VVLLDFWTY-----CCINCLHTLPYL 45 (126)
T ss_pred EEEEEEECC-----CCccHHHHHHHH
Confidence 355555443 599998764444
No 418
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=25.37 E-value=1.2e+02 Score=28.92 Aligned_cols=15 Identities=7% Similarity=0.036 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhCCCc
Q 027825 88 DCNRVRSTFEVNRVV 102 (218)
Q Consensus 88 ~C~~vr~iL~~~gV~ 102 (218)
.-.+++.|.++..++
T Consensus 312 NleAa~EIaRQlRLR 326 (414)
T TIGR00757 312 NLEAAKEIARQLRLR 326 (414)
T ss_pred HHHHHHHHHHHHhhc
Confidence 345677777776544
No 419
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=25.28 E-value=69 Score=21.33 Aligned_cols=29 Identities=28% Similarity=0.630 Sum_probs=16.6
Q ss_pred eeCCCCCCCceeee---cC-C--ceeccCCcCcCC
Q 027825 181 VPCFDCGGSCKVVL---AN-G--DKQRCGVCNENG 209 (218)
Q Consensus 181 v~C~~C~Gs~k~~~---~~-~--~~~rC~~CnenG 209 (218)
.||+.|+|--+.+. .+ . ....|..|.--|
T Consensus 2 kPCPfCGg~~~~~~~~~~~~~~~~~~~C~~Cga~~ 36 (53)
T TIGR03655 2 KPCPFCGGADVYLRRGFDPLDLSHYFECSTCGASG 36 (53)
T ss_pred CCCCCCCCcceeeEeccCCCCCEEEEECCCCCCCc
Confidence 47888877655333 11 1 234788886544
No 420
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=25.19 E-value=3.6e+02 Score=23.36 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=51.0
Q ss_pred CCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHH-------------------HHHHHHHHhCCCccc
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQ-------------------FLNELKDLLGGETVT 128 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~-------------------~r~eLk~~~~g~~~t 128 (218)
..++|+||.--- .--.+..++|+..+..+-.+|++.+++ ..++.-+.+ + ...
T Consensus 2 sagrVivYGGkG-------ALGSacv~~FkannywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL-~-gek 72 (236)
T KOG4022|consen 2 SAGRVIVYGGKG-------ALGSACVEFFKANNYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSL-Q-GEK 72 (236)
T ss_pred CCceEEEEcCcc-------hHhHHHHHHHHhcCeEEEEEeecccccccceEEecCCcchhHHHHHHHHHHHHhh-c-ccc
Confidence 357899997651 234455678999998888888764321 223333334 3 334
Q ss_pred ccE-EEECCEEEecchhhHhHHHhCcH
Q 027825 129 VPR-VFIKGRYVGGVDELTELNESGKL 154 (218)
Q Consensus 129 vPq-VFI~G~~IGG~del~~l~e~G~L 154 (218)
+-- +-|.|-.-||...-+.|.++-+|
T Consensus 73 vDav~CVAGGWAGGnAksKdl~KNaDL 99 (236)
T KOG4022|consen 73 VDAVFCVAGGWAGGNAKSKDLVKNADL 99 (236)
T ss_pred cceEEEeeccccCCCcchhhhhhchhh
Confidence 444 45888899998887888887776
No 421
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=25.08 E-value=60 Score=32.80 Aligned_cols=12 Identities=42% Similarity=1.043 Sum_probs=6.3
Q ss_pred eeCCCCCCCcee
Q 027825 181 VPCFDCGGSCKV 192 (218)
Q Consensus 181 v~C~~C~Gs~k~ 192 (218)
+||+.|.|.-++
T Consensus 54 ~pc~~c~gkG~V 65 (715)
T COG1107 54 IPCPKCRGKGTV 65 (715)
T ss_pred CCCCeeccceeE
Confidence 455555555444
No 422
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=25.00 E-value=82 Score=32.82 Aligned_cols=51 Identities=27% Similarity=0.626 Sum_probs=38.1
Q ss_pred CCcCCCCCCC---cceeeCCCCCCCceeeecCC------ceeccCCcCcCCcc-------cCCCCCC
Q 027825 168 GRQACEGCGG---ARFVPCFDCGGSCKVVLANG------DKQRCGVCNENGLV-------HCPACSS 218 (218)
Q Consensus 168 ~~~~C~~Cgg---~rfv~C~~C~Gs~k~~~~~~------~~~rC~~CnenGl~-------~C~~C~~ 218 (218)
+.-.|..||+ .--..|++|++.--+-.+.+ .|--||.|..-.++ -||.|.+
T Consensus 1116 ~~vdc~~cg~~i~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~y~~CPLCHs 1182 (1189)
T KOG2041|consen 1116 AKVDCSVCGAKIDPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISKYNCCPLCHS 1182 (1189)
T ss_pred cceeeeecCCcCCccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccccccCccccC
Confidence 4567999988 45677999999877665544 37889999877665 4898864
No 423
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=24.93 E-value=1.3e+02 Score=26.91 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=29.8
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHH
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDL 121 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~ 121 (218)
-+|+|-.+.- -|+..+.-+|+..++.++....-+....+....++
T Consensus 61 ~kiaVA~SGG-------~DSsas~iilR~~g~~v~p~t~~Lp~~ir~n~~~l 105 (255)
T COG1365 61 PKIAVAYSGG-------VDSSASAIILRWAGFTVDPGTAILPDHIRRNKEEL 105 (255)
T ss_pred ceEEEEecCC-------cchHHHHHHHHhhceeeccccccCCHHHhHHHHHH
Confidence 4555555551 47788888999999777776666666665544433
No 424
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=24.59 E-value=2.7e+02 Score=23.82 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=42.7
Q ss_pred CCCCCCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825 64 CPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL 122 (218)
Q Consensus 64 ~pp~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~ 122 (218)
.|+-+...|++.+.|+...-+. +-..+.+.|.+.+|++..+-++..-..-++|-+.+
T Consensus 96 ~p~~~srEIlvi~gSl~t~Dp~--di~~ti~~l~~~~IrvsvI~laaEv~I~k~i~~~T 152 (193)
T PF04056_consen 96 MPSHGSREILVIFGSLTTCDPG--DIHETIESLKKENIRVSVISLAAEVYICKKICKET 152 (193)
T ss_pred CccccceEEEEEEeecccCCch--hHHHHHHHHHHcCCEEEEEEEhHHHHHHHHHHHhh
Confidence 4555677888888887633322 34578889999999999998887767778888888
No 425
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=24.51 E-value=93 Score=26.23 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=27.4
Q ss_pred HHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825 90 NRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL 122 (218)
Q Consensus 90 ~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~ 122 (218)
.+++=||+.+|+...+-+++.|+++.-|+.++.
T Consensus 73 ~RA~Yilkl~g~e~~sne~stDpe~Lmevle~~ 105 (168)
T KOG3192|consen 73 ARARYLLKLKGQEQTSNELSTDPEFLMEVLEYH 105 (168)
T ss_pred HHHHHHHHHhCCCCchhhhccCHHHHHHHHHHH
Confidence 356668889999999999999999988887764
No 426
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=24.36 E-value=1.4e+02 Score=23.88 Aligned_cols=37 Identities=11% Similarity=0.022 Sum_probs=25.3
Q ss_pred cEEEEEeecCCCCCCChHHHHHHH----HHhhC-CCcEEEEECCCCHH
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRS----TFEVN-RVVTDERDVSLHGQ 113 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~----iL~~~-gV~~~erDVs~d~~ 113 (218)
+|++|+.- .||||..... +++.+ ++.++.+-+.....
T Consensus 1 ~i~~~~D~------~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 1 TIEFFFDF------ICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEEEBT------TBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred CEEEEEeC------CCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 36677766 6999986654 44555 78888877765443
No 427
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=24.29 E-value=4.8e+02 Score=22.71 Aligned_cols=38 Identities=8% Similarity=-0.040 Sum_probs=26.6
Q ss_pred cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEEC
Q 027825 71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDV 108 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDV 108 (218)
++.|+..+.+|....-..-.+++.+|+++++.|.....
T Consensus 3 ~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t 40 (293)
T TIGR00147 3 EAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVT 40 (293)
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEe
Confidence 57777777666544445566788899999988776544
No 428
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=24.21 E-value=88 Score=23.74 Aligned_cols=15 Identities=47% Similarity=0.826 Sum_probs=13.2
Q ss_pred cEEEEEeecCCCCCCChHHHH
Q 027825 71 GVVIYTTSLRGVRRTYEDCNR 91 (218)
Q Consensus 71 kVVlYttsl~giR~tc~~C~~ 91 (218)
+|.||+-|+ ||+|++
T Consensus 2 ~v~vyyESl------CPd~~~ 16 (108)
T PF03227_consen 2 NVEVYYESL------CPDCRR 16 (108)
T ss_pred EEEEEEEec------CHhHHH
Confidence 488999996 999986
No 429
>PLN02400 cellulose synthase
Probab=24.07 E-value=50 Score=35.36 Aligned_cols=39 Identities=31% Similarity=0.686 Sum_probs=26.2
Q ss_pred CCcCCCCCCCc--------ceeeCCCCCCC----ceeeecCCceeccCCcC
Q 027825 168 GRQACEGCGGA--------RFVPCFDCGGS----CKVVLANGDKQRCGVCN 206 (218)
Q Consensus 168 ~~~~C~~Cgg~--------rfv~C~~C~Gs----~k~~~~~~~~~rC~~Cn 206 (218)
.+..|.-||+. =||.|-+|.=. |--|.++++..-||.|+
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCk 85 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCK 85 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccC
Confidence 46789999987 89999999643 22333444556666665
No 430
>PRK04011 peptide chain release factor 1; Provisional
Probab=23.81 E-value=34 Score=32.49 Aligned_cols=56 Identities=25% Similarity=0.432 Sum_probs=37.1
Q ss_pred CCEEEecchhhHhHHHhCcHHHHHh--hhhhhcccCCcCCCCCCCcce-----------eeCCCCCCCcee
Q 027825 135 KGRYVGGVDELTELNESGKLGRMLR--SARVEMGIGRQACEGCGGARF-----------VPCFDCGGSCKV 192 (218)
Q Consensus 135 ~G~~IGG~del~~l~e~G~L~~lL~--~~~~~~~~~~~~C~~Cgg~rf-----------v~C~~C~Gs~k~ 192 (218)
+|..+-|.+++.+..+.|..+.||- .+...+ ....|..||-..- -.|+.|++...+
T Consensus 294 ~g~avyG~~~V~~Ale~GAVetLLV~d~l~~~r--~~~~c~~c~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 362 (411)
T PRK04011 294 GGLAVYGEEEVRKALEMGAVDTLLISEDLRKDR--VTYKCPNCGYEEEKTVKRREELPEKTCPKCGSELEI 362 (411)
T ss_pred CCcEEEcHHHHHHHHHcCCceEEEEecccccee--EEEEcCCCCcceeeecccccccccccCcccCccccc
Confidence 4678899999999999999988863 333332 3455777765432 256666666433
No 431
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=23.79 E-value=1.9e+02 Score=28.21 Aligned_cols=51 Identities=10% Similarity=0.191 Sum_probs=34.6
Q ss_pred EEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825 72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI 134 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI 134 (218)
+++|+.+ .|++|..++++|++. .|.+++.|...+.+. .+.+ + ....|.+-|
T Consensus 370 l~~~~~~------~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~----~~~~-~-v~~~P~~~i 425 (555)
T TIGR03143 370 LLLFLDG------SNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPES----ETLP-K-ITKLPTVAL 425 (555)
T ss_pred EEEEECC------CchhhHHHHHHHHHHHhcCCcEEEEEeccccchhh----Hhhc-C-CCcCCEEEE
Confidence 3446555 488999999999874 577888887666433 2334 4 445688765
No 432
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=23.78 E-value=1.7e+02 Score=22.90 Aligned_cols=8 Identities=0% Similarity=-0.234 Sum_probs=5.5
Q ss_pred CChHHHHHH
Q 027825 85 TYEDCNRVR 93 (218)
Q Consensus 85 tc~~C~~vr 93 (218)
+|+ |..-.
T Consensus 33 wC~-C~~e~ 40 (152)
T cd00340 33 KCG-FTPQY 40 (152)
T ss_pred CCC-chHHH
Confidence 588 88643
No 433
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=23.72 E-value=62 Score=29.09 Aligned_cols=35 Identities=31% Similarity=0.562 Sum_probs=22.6
Q ss_pred CCcceeeCCCCCCCceeeec-CCceeccCCcCcCCc
Q 027825 176 GGARFVPCFDCGGSCKVVLA-NGDKQRCGVCNENGL 210 (218)
Q Consensus 176 gg~rfv~C~~C~Gs~k~~~~-~~~~~rC~~CnenGl 210 (218)
++...|.|..|+-.=-+-.. +.-+++|+.|||---
T Consensus 61 ~~~p~v~CrVCq~~I~i~gk~~QhVVkC~~CnEATP 96 (256)
T PF09788_consen 61 GGAPVVTCRVCQSLIDIEGKMHQHVVKCSVCNEATP 96 (256)
T ss_pred CCCceEEeecCCceecccCccceeeEECCCCCcccc
Confidence 46778888888765333211 123899999999643
No 434
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=23.52 E-value=64 Score=29.65 Aligned_cols=36 Identities=28% Similarity=0.803 Sum_probs=24.4
Q ss_pred CCcCCCCCCC---------------cceeeCCCCCCCceeeecCCceeccCCcCcC
Q 027825 168 GRQACEGCGG---------------ARFVPCFDCGGSCKVVLANGDKQRCGVCNEN 208 (218)
Q Consensus 168 ~~~~C~~Cgg---------------~rfv~C~~C~Gs~k~~~~~~~~~rC~~Cnen 208 (218)
..+.|..||+ .||.-|+.|+..-.. ...+|+.|.+.
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~-----~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY-----VRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccc-----cCccCCCCCCC
Confidence 4568999963 478888888765333 25677777654
No 435
>PRK07220 DNA topoisomerase I; Validated
Probab=23.27 E-value=95 Score=31.76 Aligned_cols=48 Identities=31% Similarity=0.701 Sum_probs=28.5
Q ss_pred CcCCCCCCC----------cceeeCCC---CCCCceeeecCC----ceeccCCcCcC-------C----cccCCCCC
Q 027825 169 RQACEGCGG----------ARFVPCFD---CGGSCKVVLANG----DKQRCGVCNEN-------G----LVHCPACS 217 (218)
Q Consensus 169 ~~~C~~Cgg----------~rfv~C~~---C~Gs~k~~~~~~----~~~rC~~Cnen-------G----l~~C~~C~ 217 (218)
...|+.||+ ..|+-|+. |.-..... .++ ....||.|+.+ | -+.||.|.
T Consensus 589 ~~~CP~Cg~~l~~r~~r~g~~f~gCs~yp~C~~~~~l~-~~g~~~~~~~~Cp~Cg~~~~k~~~~g~~~~~~~Cp~C~ 664 (740)
T PRK07220 589 IGKCPLCGSDLMVRRSKRGSRFIGCEGYPECTFSLPLP-KSGQIIVTDKVCEAHGLNHIRIINGGKRPWDLGCPQCN 664 (740)
T ss_pred ccccccCCCeeeEEecCCCceEEEcCCCCCCCceeeCC-CCCccccCCCCCCCCCCceEEEEecCCccceeeCCCCC
Confidence 357999984 34888865 65333221 111 23579999741 2 35788885
No 436
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=23.19 E-value=88 Score=21.98 Aligned_cols=27 Identities=37% Similarity=0.687 Sum_probs=19.5
Q ss_pred eeCCCCCCCceeeecCCceeccCCcCc
Q 027825 181 VPCFDCGGSCKVVLANGDKQRCGVCNE 207 (218)
Q Consensus 181 v~C~~C~Gs~k~~~~~~~~~rC~~Cne 207 (218)
|-|+.|.--.-+|......++|..|..
T Consensus 12 VkCp~C~n~q~vFsha~t~V~C~~Cg~ 38 (59)
T PRK00415 12 VKCPDCGNEQVVFSHASTVVRCLVCGK 38 (59)
T ss_pred EECCCCCCeEEEEecCCcEEECcccCC
Confidence 567777777667666667888888864
No 437
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=23.15 E-value=51 Score=21.34 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=9.9
Q ss_pred HHHhhhhhhcccCCcCCCCCCCc
Q 027825 156 RMLRSARVEMGIGRQACEGCGGA 178 (218)
Q Consensus 156 ~lL~~~~~~~~~~~~~C~~Cgg~ 178 (218)
.+|+++.-. ...|+.||..
T Consensus 8 ~LL~G~~ML----~~~Cp~C~~P 26 (41)
T PF06677_consen 8 YLLQGWTML----DEHCPDCGTP 26 (41)
T ss_pred HHHHhHhHh----cCccCCCCCe
Confidence 355555443 3566666543
No 438
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=23.10 E-value=2.2e+02 Score=25.03 Aligned_cols=31 Identities=3% Similarity=-0.036 Sum_probs=18.1
Q ss_pred EEEEEeecCCCCCCChHHHHH-------HHHHhhCCCcEEEEEC
Q 027825 72 VVIYTTSLRGVRRTYEDCNRV-------RSTFEVNRVVTDERDV 108 (218)
Q Consensus 72 VVlYttsl~giR~tc~~C~~v-------r~iL~~~gV~~~erDV 108 (218)
|+.|.++ +|+.|..- .+-+...|+.+.-+..
T Consensus 103 vl~FwAs------wCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~ 140 (236)
T PLN02399 103 LIVNVAS------KCGLTSSNYSELSHLYEKYKTQGFEILAFPC 140 (236)
T ss_pred EEEEEcC------CCcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 4455555 59999753 2333445677666664
No 439
>PF09633 DUF2023: Protein of unknown function (DUF2023); InterPro: IPR018594 This protein of approx.120 residues consists of three beta strands and five alpha helices, thought to fold into a homo-dimer. ; PDB: 2GUK_B.
Probab=22.78 E-value=2.6e+02 Score=21.76 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=33.2
Q ss_pred CCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC--------HHHHHHHHHHh
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--------GQFLNELKDLL 122 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d--------~~~r~eLk~~~ 122 (218)
+-...||||++- .+...+.+-|+..+|.|....+..+ ++..+.++...
T Consensus 13 GvR~LvL~T~~~-------~~~~~~~~rL~~~~I~y~iq~v~~~~iNlFFG~~~Ci~~ir~i~ 68 (101)
T PF09633_consen 13 GVRQLVLHTLPK-------RYEEFAIARLERQGIDYFIQPVGNGKINLFFGRKECIEVIRSIV 68 (101)
T ss_dssp TS-SEEEEEEEG-------GGHHHHHHHHHHTT--EEEEE-TSSEEEEEEE-HHHHHHHHHHH
T ss_pred hhhhHhhhhCCH-------hhHHHHHHHHHHCCCCEEEEEcCCCCEEEEECCHHHHHHHHHHh
Confidence 445789999994 6888999999999999998888653 45555555543
No 440
>PF12132 DUF3587: Protein of unknown function (DUF3587); InterPro: IPR021982 This entry is represented by Hyposoter fugitivus ichnovirus, Gp7; it is a family of uncharacterised viral proteins.
Probab=22.74 E-value=88 Score=27.08 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=52.2
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEE---ecchhh-
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYV---GGVDEL- 145 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~I---GG~del- 145 (218)
-+|++|.+..= .+.+.+...+.|.-.| ..+..+++.|++++ ..++-..|+||+.+ -.+|.-
T Consensus 18 ~diilyms~fl----~f~dy~~fi~alwPn~--------~e~~~i~~~Lw~lS---t~~~~ttF~NGK~L~IeYnfDp~R 82 (199)
T PF12132_consen 18 LDIILYMSKFL----NFEDYRNFIRALWPNG--------DEDDIIREKLWRLS---THKITTTFLNGKPLEIEYNFDPSR 82 (199)
T ss_pred cchhhhHHHhc----cHHHHHHHHHhhCCCC--------CcCHHHHHHHHhcc---cceEEEEEECCcEEEEEEecCCCC
Confidence 35889988753 4677777777776665 23567888898876 88999999999765 334332
Q ss_pred ----HhHHHhCcHHHHHhhh
Q 027825 146 ----TELNESGKLGRMLRSA 161 (218)
Q Consensus 146 ----~~l~e~G~L~~lL~~~ 161 (218)
+=|..-..|..++.++
T Consensus 83 ~~edrILInvdsLlPvFGgi 102 (199)
T PF12132_consen 83 TEEDRILINVDSLLPVFGGI 102 (199)
T ss_pred CccccEEEEccccchhhCCC
Confidence 2244556666666664
No 441
>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.
Probab=22.62 E-value=62 Score=22.76 Aligned_cols=29 Identities=21% Similarity=0.568 Sum_probs=13.8
Q ss_pred cceeeCCCCCCCceeeecCCceeccCCcCc
Q 027825 178 ARFVPCFDCGGSCKVVLANGDKQRCGVCNE 207 (218)
Q Consensus 178 ~rfv~C~~C~Gs~k~~~~~~~~~rC~~Cne 207 (218)
.-.+.|-.|+....+.... .-++|+.|..
T Consensus 28 ~v~IlCNDC~~~s~v~fH~-lg~KC~~C~S 56 (61)
T PF14599_consen 28 KVWILCNDCNAKSEVPFHF-LGHKCSHCGS 56 (61)
T ss_dssp EEEEEESSS--EEEEE--T-T----TTTS-
T ss_pred EEEEECCCCCCccceeeeH-hhhcCCCCCC
Confidence 3578899998866554332 2588988863
No 442
>PHA03075 glutaredoxin-like protein; Provisional
Probab=22.33 E-value=1.2e+02 Score=24.40 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=25.0
Q ss_pred CcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEE
Q 027825 70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDER 106 (218)
Q Consensus 70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~er 106 (218)
..++||.+++ |+-|+.+..+|....=+|+..
T Consensus 3 ~tLILfGKP~------C~vCe~~s~~l~~ledeY~il 33 (123)
T PHA03075 3 KTLILFGKPL------CSVCESISEALKELEDEYDIL 33 (123)
T ss_pred ceEEEeCCcc------cHHHHHHHHHHHHhhccccEE
Confidence 4689999996 999999999998876555543
No 443
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=22.28 E-value=61 Score=35.40 Aligned_cols=38 Identities=24% Similarity=0.670 Sum_probs=25.0
Q ss_pred CcCCCCCCCcc--eeeCCCCCCCceeeecCCceeccCCcCcC
Q 027825 169 RQACEGCGGAR--FVPCFDCGGSCKVVLANGDKQRCGVCNEN 208 (218)
Q Consensus 169 ~~~C~~Cgg~r--fv~C~~C~Gs~k~~~~~~~~~rC~~Cnen 208 (218)
...|..||..- -..|+.|+..-- ....+..+||.|+-+
T Consensus 679 ~~fCP~CGs~te~vy~CPsCGaev~--~des~a~~CP~CGtp 718 (1337)
T PRK14714 679 ENRCPDCGTHTEPVYVCPDCGAEVP--PDESGRVECPRCDVE 718 (1337)
T ss_pred cccCcccCCcCCCceeCccCCCccC--CCccccccCCCCCCc
Confidence 45799999875 346999987522 122237789999854
No 444
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=22.18 E-value=48 Score=28.52 Aligned_cols=43 Identities=21% Similarity=0.557 Sum_probs=24.8
Q ss_pred CCcCCCCCCCcce-------eeCCCCCCC-ceeeecCCceeccCCcCcCCcc
Q 027825 168 GRQACEGCGGARF-------VPCFDCGGS-CKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 168 ~~~~C~~Cgg~rf-------v~C~~C~Gs-~k~~~~~~~~~rC~~CnenGl~ 211 (218)
....|..||..+- ++|..|+-. +++ ..--....|..|+|+|-+
T Consensus 59 ~~~~C~nCg~~GH~~~DCP~~iC~~C~~~~H~s-~~C~~~~~C~~Cg~~GH~ 109 (190)
T COG5082 59 ENPVCFNCGQNGHLRRDCPHSICYNCSWDGHRS-NHCPKPKKCYNCGETGHL 109 (190)
T ss_pred cccccchhcccCcccccCChhHhhhcCCCCccc-ccCCcccccccccccCcc
Confidence 4566777775543 456688211 221 111124789999999865
No 445
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=21.98 E-value=1.5e+02 Score=23.46 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=31.6
Q ss_pred CCcEEEEEeecCC--CCCCChHHHHHHHHH----hhC--CCcEEEEECCCCHHHHH---HHHH--HhCCCcccccEEEE
Q 027825 69 SDGVVIYTTSLRG--VRRTYEDCNRVRSTF----EVN--RVVTDERDVSLHGQFLN---ELKD--LLGGETVTVPRVFI 134 (218)
Q Consensus 69 ~~kVVlYttsl~g--iR~tc~~C~~vr~iL----~~~--gV~~~erDVs~d~~~r~---eLk~--~~~g~~~tvPqVFI 134 (218)
..++.||+++..- =+..||+|.++.-++ ... +..+.+..|...+.+++ .++. .. . -..+|.|+-
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~-~-l~~IPTLi~ 95 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDL-K-LKGIPTLIR 95 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC-----SSSEEEE
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEccee-e-eeecceEEE
Confidence 4566666665432 344699999988544 432 45677778864443332 2333 12 2 556898863
No 446
>PTZ00056 glutathione peroxidase; Provisional
Probab=21.88 E-value=3e+02 Score=23.03 Aligned_cols=24 Identities=0% Similarity=-0.260 Sum_probs=13.4
Q ss_pred CChHHHHH----HHHH---hhCCCcEEEEEC
Q 027825 85 TYEDCNRV----RSTF---EVNRVVTDERDV 108 (218)
Q Consensus 85 tc~~C~~v----r~iL---~~~gV~~~erDV 108 (218)
.|+.|.+- .++. ...|+.+.-+.+
T Consensus 50 wC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 50 KCGLTKKHVDQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred CCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 59999852 2232 334666655543
No 447
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=21.61 E-value=1.4e+02 Score=22.76 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=33.8
Q ss_pred CCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECC----CCHHHHHH
Q 027825 69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVS----LHGQFLNE 117 (218)
Q Consensus 69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs----~d~~~r~e 117 (218)
..+|+|.++.. ....+.++.+.|++.|+...-+|+. .|.+...+
T Consensus 9 g~di~iia~G~-----~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~ 56 (124)
T PF02780_consen 9 GADITIIAYGS-----MVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLE 56 (124)
T ss_dssp SSSEEEEEETT-----HHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHH
T ss_pred CCCEEEEeehH-----HHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHH
Confidence 34678888775 5789999999999999998888873 46555444
No 448
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=21.53 E-value=58 Score=28.92 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=9.4
Q ss_pred EEEECCEEEecc
Q 027825 131 RVFIKGRYVGGV 142 (218)
Q Consensus 131 qVFI~G~~IGG~ 142 (218)
.|+||...||..
T Consensus 72 ~~~vdq~pi~~~ 83 (261)
T cd03271 72 VIVIDQSPIGRT 83 (261)
T ss_pred eEEecCCcCCCC
Confidence 568888888775
No 449
>PF14369 zf-RING_3: zinc-finger
Probab=21.47 E-value=79 Score=19.60 Aligned_cols=8 Identities=25% Similarity=0.791 Sum_probs=5.0
Q ss_pred eeccCCcC
Q 027825 199 KQRCGVCN 206 (218)
Q Consensus 199 ~~rC~~Cn 206 (218)
...||.|+
T Consensus 21 ~~~CP~C~ 28 (35)
T PF14369_consen 21 DVACPRCH 28 (35)
T ss_pred CcCCcCCC
Confidence 34577776
No 450
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=21.45 E-value=2.7e+02 Score=24.15 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=34.6
Q ss_pred cEEEEEee-cCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHh
Q 027825 71 GVVIYTTS-LRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLL 122 (218)
Q Consensus 71 kVVlYtts-l~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~ 122 (218)
.|.+|.+. +-. ..-+.=..++.+|+.+ +|.|+.+|...+++..++..+..
T Consensus 28 ~i~~~~s~~l~~--~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~ 84 (271)
T PF09822_consen 28 TITVYFSRELPP--ELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEY 84 (271)
T ss_pred EEEEEECCCcch--hhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhc
Confidence 46667666 100 1245677889999887 79999999977777766655554
No 451
>KOG4623 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.18 E-value=40 Score=33.32 Aligned_cols=28 Identities=21% Similarity=0.522 Sum_probs=24.8
Q ss_pred ceeeCCCCCCCceeeecCCceeccCCcC
Q 027825 179 RFVPCFDCGGSCKVVLANGDKQRCGVCN 206 (218)
Q Consensus 179 rfv~C~~C~Gs~k~~~~~~~~~rC~~Cn 206 (218)
--|.|.-||++.++...++.--+||.|-
T Consensus 27 t~VnCwFCnk~t~vpyq~rNswTCpsCE 54 (611)
T KOG4623|consen 27 TTVNCWFCNKKTEVPYQGRNSWTCPSCE 54 (611)
T ss_pred ceEEEEEecCcceeccCCCCCCcCCcHH
Confidence 4589999999999998888888999995
No 452
>PTZ00256 glutathione peroxidase; Provisional
Probab=20.99 E-value=2.9e+02 Score=22.58 Aligned_cols=24 Identities=0% Similarity=-0.188 Sum_probs=14.2
Q ss_pred CChHHHHH----HHHH---hhCCCcEEEEEC
Q 027825 85 TYEDCNRV----RSTF---EVNRVVTDERDV 108 (218)
Q Consensus 85 tc~~C~~v----r~iL---~~~gV~~~erDV 108 (218)
.|+.|.+- .++. +..|+.+.-+.+
T Consensus 52 wCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~ 82 (183)
T PTZ00256 52 KCGLTSDHYTQLVELYKQYKSQGLEILAFPC 82 (183)
T ss_pred CCCchHHHHHHHHHHHHHHhhCCcEEEEEec
Confidence 49999963 3332 345676666654
No 453
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=20.84 E-value=41 Score=20.21 Aligned_cols=16 Identities=38% Similarity=1.101 Sum_probs=9.7
Q ss_pred ccCCcCcCCcccCCCC
Q 027825 201 RCGVCNENGLVHCPAC 216 (218)
Q Consensus 201 rC~~CnenGl~~C~~C 216 (218)
.|..|+..+.-+||.|
T Consensus 4 ~C~vC~~~~kY~Cp~C 19 (30)
T PF04438_consen 4 LCSVCGNPAKYRCPRC 19 (30)
T ss_dssp EETSSSSEESEE-TTT
T ss_pred CCccCcCCCEEECCCc
Confidence 4666666666666666
No 454
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=20.72 E-value=51 Score=28.23 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=28.3
Q ss_pred HHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcc--cccEEEECCEEEe
Q 027825 91 RVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETV--TVPRVFIKGRYVG 140 (218)
Q Consensus 91 ~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~--tvPqVFI~G~~IG 140 (218)
++++||+.+||++-.--+..+++-..+..+.+ |... .=|||..+|+--+
T Consensus 6 qaK~ll~~~gi~vp~g~~a~s~eea~~~~~~l-~~~~~VvKaQvl~GgRGK~ 56 (202)
T PF08442_consen 6 QAKELLRKYGIPVPRGVVATSPEEAREAAKEL-GGKPLVVKAQVLAGGRGKA 56 (202)
T ss_dssp HHHHHHHCTT----SEEEESSHHHHHHHHHHH-TTSSEEEEE-SSSSTTTTT
T ss_pred HHHHHHHHcCCCCCCeeecCCHHHHHHHHHHh-CCCcEEEEEeEeecCcccC
Confidence 57899999999987777665555444444445 4232 3388888886443
No 455
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=20.68 E-value=85 Score=25.73 Aligned_cols=34 Identities=18% Similarity=0.476 Sum_probs=15.4
Q ss_pred CcceeeCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825 177 GARFVPCFDCGGSCKVVLANGDKQRCGVCNENGLV 211 (218)
Q Consensus 177 g~rfv~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~ 211 (218)
|.|...|..|+-..-... -..-..||.|+-+.-.
T Consensus 109 g~G~l~C~~Cg~~~~~~~-~~~l~~Cp~C~~~~F~ 142 (146)
T PF07295_consen 109 GPGTLVCENCGHEVELTH-PERLPPCPKCGHTEFT 142 (146)
T ss_pred cCceEecccCCCEEEecC-CCcCCCCCCCCCCeee
Confidence 444555555544433322 1234556666554433
No 456
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=20.63 E-value=3.5e+02 Score=20.55 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=14.7
Q ss_pred CChHHHHHHHHH-------hhCCCcEEEEECCC
Q 027825 85 TYEDCNRVRSTF-------EVNRVVTDERDVSL 110 (218)
Q Consensus 85 tc~~C~~vr~iL-------~~~gV~~~erDVs~ 110 (218)
.|+.|.+....| .+.++.+.-+.++.
T Consensus 40 ~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 72 (149)
T cd03018 40 FTPVCTKELCALRDSLELFEAAGAEVLGISVDS 72 (149)
T ss_pred CCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 489998543322 33466666665543
No 457
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=20.47 E-value=3.6e+02 Score=20.10 Aligned_cols=35 Identities=14% Similarity=0.046 Sum_probs=19.1
Q ss_pred CcEEEEEe-ecCCCCCCChHHHHHHHHH-------hhCCCcEEEEECC
Q 027825 70 DGVVIYTT-SLRGVRRTYEDCNRVRSTF-------EVNRVVTDERDVS 109 (218)
Q Consensus 70 ~kVVlYtt-sl~giR~tc~~C~~vr~iL-------~~~gV~~~erDVs 109 (218)
+.++||+. +. .|+.|.....-| +..++.+..+.++
T Consensus 23 k~~ll~f~~~~-----~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d 65 (140)
T cd02971 23 KWVVLFFYPKD-----FTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD 65 (140)
T ss_pred CeEEEEEeCCC-----CCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34555554 32 488887643322 3356777666654
No 458
>PF14949 ARF7EP_C: ARF7 effector protein C-terminus
Probab=20.35 E-value=58 Score=25.34 Aligned_cols=18 Identities=39% Similarity=1.115 Sum_probs=13.6
Q ss_pred CcCCCCCCCcceeeCCCCCCCc
Q 027825 169 RQACEGCGGARFVPCFDCGGSC 190 (218)
Q Consensus 169 ~~~C~~Cgg~rfv~C~~C~Gs~ 190 (218)
...|.|| |-||+.|+..+
T Consensus 67 ~~~C~GC----~~PC~~C~S~K 84 (103)
T PF14949_consen 67 DEDCPGC----HYPCPKCGSRK 84 (103)
T ss_pred CCCCCCc----cccCCCCCCCc
Confidence 3458888 78999998763
No 459
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.35 E-value=2.3e+02 Score=25.24 Aligned_cols=75 Identities=15% Similarity=0.271 Sum_probs=53.6
Q ss_pred CCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825 68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE 147 (218)
Q Consensus 68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~ 147 (218)
....|.+|-.+ .|-.|+.+|+-..++|.++--.. .++ +++| ..+|.|-|+-..+.+++-|.+
T Consensus 25 e~eQiLl~d~a---------scLAVqtfLrMcnLPf~v~~~~N-aef------mSP~--G~vPllr~g~~~~aef~pIV~ 86 (257)
T KOG3027|consen 25 EAEQILLPDNA---------SCLAVQTFLRMCNLPFNVRQRAN-AEF------MSPG--GKVPLLRIGKTLFAEFEPIVD 86 (257)
T ss_pred cccccccccch---------hHHHHHHHHHHcCCCceeeecCC-ccc------cCCC--CCCceeeecchhhhhhhHHHH
Confidence 34557777665 89999999999999998865432 221 2223 389999999999999999888
Q ss_pred HHHhC--cHHHHHhh
Q 027825 148 LNESG--KLGRMLRS 160 (218)
Q Consensus 148 l~e~G--~L~~lL~~ 160 (218)
..+.. .|..+|.+
T Consensus 87 fVeak~~~l~s~lsE 101 (257)
T KOG3027|consen 87 FVEAKGVTLTSWLSE 101 (257)
T ss_pred HHHHhccchhhhhhh
Confidence 77654 34445444
No 460
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=20.20 E-value=2.5e+02 Score=24.48 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=26.5
Q ss_pred EEEEECCCC----HHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHHhC
Q 027825 103 TDERDVSLH----GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNESG 152 (218)
Q Consensus 103 ~~erDVs~d----~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e~G 152 (218)
.-..||-|. -++++.|.+. ..++|.|||-|+ |+.-...+.-+.|
T Consensus 51 clllDvrMPg~sGlelq~~L~~~----~~~~PVIfiTGh--gDIpmaV~AmK~G 98 (202)
T COG4566 51 CLLLDVRMPGMSGLELQDRLAER----GIRLPVIFLTGH--GDIPMAVQAMKAG 98 (202)
T ss_pred eEEEecCCCCCchHHHHHHHHhc----CCCCCEEEEeCC--CChHHHHHHHHcc
Confidence 456777653 4555555543 789999999996 4443333333344
No 461
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=20.18 E-value=56 Score=34.88 Aligned_cols=39 Identities=36% Similarity=0.799 Sum_probs=26.7
Q ss_pred CCcCCCCCCCc--------ceeeCCCCCCC-ce---eeecCCceeccCCcC
Q 027825 168 GRQACEGCGGA--------RFVPCFDCGGS-CK---VVLANGDKQRCGVCN 206 (218)
Q Consensus 168 ~~~~C~~Cgg~--------rfv~C~~C~Gs-~k---~~~~~~~~~rC~~Cn 206 (218)
....|.-||+. =||.|-+|+=. || .+.++++..-||.|+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~ 64 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCN 64 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccC
Confidence 57789999987 89999998643 22 333444566666665
No 462
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=20.17 E-value=67 Score=31.12 Aligned_cols=39 Identities=18% Similarity=0.547 Sum_probs=30.7
Q ss_pred cHHHHHhhhhhhcccCCcCCCCCCC---------cceeeCCCCCCCceee
Q 027825 153 KLGRMLRSARVEMGIGRQACEGCGG---------ARFVPCFDCGGSCKVV 193 (218)
Q Consensus 153 ~L~~lL~~~~~~~~~~~~~C~~Cgg---------~rfv~C~~C~Gs~k~~ 193 (218)
++..+++.+.... ....|.-||. +++-+|..|++.|+.+
T Consensus 9 d~~~vfkkLRs~~--~NKvCFDCgAknPtWaSVTYGIFLCiDCSAvHRnL 56 (454)
T KOG0706|consen 9 DIQTVFKKLRSQS--ENKVCFDCGAKNPTWASVTYGIFLCIDCSAVHRNL 56 (454)
T ss_pred hHHHHHHHHhcCC--CCceecccCCCCCCceeecceEEEEEecchhhhcc
Confidence 4556666666655 5779999986 6899999999999986
No 463
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding fun
Probab=20.09 E-value=74 Score=25.71 Aligned_cols=31 Identities=29% Similarity=0.557 Sum_probs=19.0
Q ss_pred CcceeeCCCCCCCceeeecCCceeccCCcCcCC
Q 027825 177 GARFVPCFDCGGSCKVVLANGDKQRCGVCNENG 209 (218)
Q Consensus 177 g~rfv~C~~C~Gs~k~~~~~~~~~rC~~CnenG 209 (218)
+.-+.-|+.|+. |+...+.+.-+|+.||.+-
T Consensus 31 ~~~Y~aC~~C~k--kv~~~~~~~~~C~~C~~~~ 61 (166)
T cd04476 31 NWWYPACPGCNK--KVVEEGNGTYRCEKCNKSV 61 (166)
T ss_pred CeEEccccccCc--ccEeCCCCcEECCCCCCcC
Confidence 345666777754 4433332678888888763
No 464
>PRK11827 hypothetical protein; Provisional
Probab=20.09 E-value=1.1e+02 Score=21.56 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=16.9
Q ss_pred eeeCCCCCCCceeeecCCceeccCCcCc
Q 027825 180 FVPCFDCGGSCKVVLANGDKQRCGVCNE 207 (218)
Q Consensus 180 fv~C~~C~Gs~k~~~~~~~~~rC~~Cne 207 (218)
.+.|+.|+|.-. +..+...+.|..|+-
T Consensus 8 ILaCP~ckg~L~-~~~~~~~Lic~~~~l 34 (60)
T PRK11827 8 IIACPVCNGKLW-YNQEKQELICKLDNL 34 (60)
T ss_pred heECCCCCCcCe-EcCCCCeEECCccCe
Confidence 356888888644 233445677888763
Done!