BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027826
(218 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B1XLW1|Y2658_SYNP2 PKHD-type hydroxylase SYNPCC7002_A2658 OS=Synechococcus sp. (strain
ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A2658 PE=3
SV=1
Length = 219
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 30 AELVSA-MAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA 88
AE V + AGW A+L+ E AT T+ L R + R ++ VH
Sbjct: 24 AEFVDGKLTAGWYAKLVKENQQLAKATPTAQALEEQVRQALQSNALFQTAIRPKT--VHT 81
Query: 89 LGEAGFSPQVITGEADDEELMDGL-VDIDFLVVDSRRKDF 127
L + + P + G D LM+G+ D+ F + + D+
Sbjct: 82 LLFSRYGPGMAYGRHTDNALMNGMRSDVSFTLFLNEPSDY 121
>sp|Q4ZSF3|XYLG_PSEU2 Xylose import ATP-binding protein XylG OS=Pseudomonas syringae pv.
syringae (strain B728a) GN=xylG PE=3 SV=1
Length = 518
Score = 34.3 bits (77), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 27 SGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV 86
+G ELVSA+ + R E W +G A T L S G VC+VP++R R +
Sbjct: 301 AGRTELVSALFGAYPGRYSGEVWLNGQAIDTRTPL--KSIRAG---VCMVPEDRKRQGII 355
Query: 87 HALG 90
LG
Sbjct: 356 PDLG 359
>sp|A3DHI6|Y2213_CLOTH UPF0316 protein Cthe_2213 OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=Cthe_2213 PE=3 SV=1
Length = 205
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 49 WSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEEL 108
++ G AT T VG+ + + G V V +++ E L ++GF V+ D +
Sbjct: 76 YAAGFATGTFVGIIIEEKLAIGTLVIRVIVDKNECELKERLSKSGFGVTVV-----DAKG 130
Query: 109 MDGLVDIDFLVVDSRRKDFARVLRLANLSSRGAVLVCKNAYSRNDSTFR 157
+G V I + ++ +RK+ V+R+ + A ++A N FR
Sbjct: 131 KNGDVKIIYTII--KRKELQEVVRIIEECNSKAFYSIEDARKVNQGIFR 177
>sp|Q9PJB8|END4_CHLMU Probable endonuclease 4 OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=nfo PE=3 SV=1
Length = 288
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 174 YLPVGKGLDIAHVATSGAVSSSAKGGSRWIKHFDRQSG 211
++PVG LD H+ +G SS +G + +KHFD G
Sbjct: 179 HIPVGVCLDTCHIFAAGYDISSPEGWEQVLKHFDEVIG 216
>sp|Q48J74|XYLG_PSE14 Xylose import ATP-binding protein XylG OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=xylG PE=3 SV=1
Length = 518
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 27 SGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV 86
+G ELVSA+ + R E W G T L S G +C+VP++R R +
Sbjct: 301 AGRTELVSALFGAYPGRYTGEVWLDGQPVDTRTPL--KSIRAG---LCMVPEDRKRQGII 355
Query: 87 HALG 90
LG
Sbjct: 356 PDLG 359
>sp|P47808|MYSH_ACACA High molecular weight form of myosin-1 OS=Acanthamoeba castellanii
PE=4 SV=1
Length = 1577
Score = 31.6 bits (70), Expect = 3.8, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 26 ESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGG 70
E VAEL++A+A G R TW H A ++G A+ + + G
Sbjct: 938 EELVAELLNALAVGMAMRTSETTWDHAAIDAHTLGSAIYAAESFG 982
>sp|O84630|END4_CHLTR Probable endonuclease 4 OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=nfo PE=3 SV=1
Length = 288
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 174 YLPVGKGLDIAHVATSGAVSSSAKGGSRWIKHFD 207
++P+G LD H+ +G SS G + +KHFD
Sbjct: 179 HIPIGVCLDTCHIFAAGYDISSVAGWEQVLKHFD 212
>sp|Q3KL70|END4_CHLTA Probable endonuclease 4 OS=Chlamydia trachomatis serovar A (strain
HAR-13 / ATCC VR-571B) GN=nfo PE=3 SV=1
Length = 288
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 174 YLPVGKGLDIAHVATSGAVSSSAKGGSRWIKHFD 207
++P+G LD H+ +G SS G + +KHFD
Sbjct: 179 HIPIGVCLDTCHIFAAGYDISSVAGWEQVLKHFD 212
>sp|B0BA79|END4_CHLTB Probable endonuclease 4 OS=Chlamydia trachomatis serovar L2b
(strain UCH-1/proctitis) GN=nfo PE=3 SV=1
Length = 288
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 175 LPVGKGLDIAHVATSGAVSSSAKGGSRWIKHFD 207
+P+G LD H+ +G SS G + +KHFD
Sbjct: 180 IPIGVCLDTCHIFAAGYDISSVAGWEQVLKHFD 212
>sp|B0B8K0|END4_CHLT2 Probable endonuclease 4 OS=Chlamydia trachomatis serovar L2 (strain
434/Bu / ATCC VR-902B) GN=nfo PE=3 SV=1
Length = 288
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 175 LPVGKGLDIAHVATSGAVSSSAKGGSRWIKHFD 207
+P+G LD H+ +G SS G + +KHFD
Sbjct: 180 IPIGVCLDTCHIFAAGYDISSVAGWEQVLKHFD 212
>sp|Q8F8F1|Y606_LEPIN UPF0316 protein LA_0606 OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601)
GN=LA_0606 PE=3 SV=2
Length = 199
Score = 30.4 bits (67), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 49 WSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEEL 108
++ G AT T +G+ + + G + + ++ SE L EAG+ ++ G
Sbjct: 79 YAGGFATGTFIGMILEEKLAIGFSLLRIISPQNGSEIADKLSEAGYRVTIMNGHGS---- 134
Query: 109 MDGLVDIDFLVVDSRRKDFARVLRLANLSSRGAVLVCKNAYSRNDSTF 156
G V I F V+ +RK + +++ +NA N +TF
Sbjct: 135 -RGPVKIVFTVL--KRKKIDQAMKIVQNVEPDVFYSIENARRTNTTTF 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,589,784
Number of Sequences: 539616
Number of extensions: 3259029
Number of successful extensions: 9114
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 9106
Number of HSP's gapped (non-prelim): 33
length of query: 218
length of database: 191,569,459
effective HSP length: 113
effective length of query: 105
effective length of database: 130,592,851
effective search space: 13712249355
effective search space used: 13712249355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)