Query 027826
Match_columns 218
No_of_seqs 167 out of 1206
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 15:47:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07279 DUF1442: Protein of u 100.0 1.8E-56 4E-61 381.3 19.8 214 1-218 1-218 (218)
2 PF01596 Methyltransf_3: O-met 100.0 1.3E-42 2.8E-47 296.3 12.9 159 21-187 25-205 (205)
3 COG4122 Predicted O-methyltran 100.0 8.4E-41 1.8E-45 287.5 18.4 171 9-187 10-218 (219)
4 PLN02589 caffeoyl-CoA O-methyl 100.0 2.2E-40 4.7E-45 289.8 17.7 156 24-187 62-246 (247)
5 PLN02476 O-methyltransferase 100.0 3.6E-39 7.7E-44 286.3 17.8 157 23-187 100-278 (278)
6 KOG1663 O-methyltransferase [S 100.0 3.7E-36 8.1E-41 258.7 15.5 157 22-186 54-236 (237)
7 PLN02781 Probable caffeoyl-CoA 100.0 1.1E-35 2.3E-40 257.6 17.5 157 23-187 50-233 (234)
8 PLN03075 nicotianamine synthas 99.6 1.6E-14 3.4E-19 129.7 12.1 123 25-156 108-240 (296)
9 PF13578 Methyltransf_24: Meth 99.5 1E-14 2.2E-19 110.4 1.0 98 46-148 1-106 (106)
10 PRK13942 protein-L-isoaspartat 99.4 6.3E-12 1.4E-16 107.2 13.0 115 24-146 59-175 (212)
11 PRK04457 spermidine synthase; 99.3 2.1E-11 4.5E-16 107.5 12.5 108 32-146 57-176 (262)
12 TIGR00080 pimt protein-L-isoas 99.3 2.9E-11 6.3E-16 102.8 12.7 115 24-146 60-176 (215)
13 PRK13944 protein-L-isoaspartat 99.3 7.5E-11 1.6E-15 99.9 12.8 115 26-148 57-174 (205)
14 PRK00312 pcm protein-L-isoaspa 99.3 9.3E-11 2E-15 99.2 12.7 145 24-182 61-211 (212)
15 COG2518 Pcm Protein-L-isoaspar 99.3 5E-11 1.1E-15 102.3 10.7 112 24-147 55-169 (209)
16 PRK08287 cobalt-precorrin-6Y C 99.2 1.8E-10 3.9E-15 95.6 13.1 117 25-150 15-134 (187)
17 TIGR00138 gidB 16S rRNA methyl 99.2 1.4E-10 3.1E-15 96.9 11.5 101 37-146 38-141 (181)
18 PRK07402 precorrin-6B methylas 99.2 3.5E-10 7.5E-15 94.7 12.9 119 23-149 22-144 (196)
19 TIGR02469 CbiT precorrin-6Y C5 99.2 5.2E-10 1.1E-14 85.0 12.4 101 39-146 17-121 (124)
20 PRK00107 gidB 16S rRNA methylt 99.2 5.8E-10 1.3E-14 94.0 13.3 97 41-146 45-144 (187)
21 PRK00377 cbiT cobalt-precorrin 99.2 5.3E-10 1.2E-14 93.9 12.5 121 24-150 22-148 (198)
22 PF12847 Methyltransf_18: Meth 99.2 3.2E-10 7E-15 85.3 9.9 98 42-146 2-110 (112)
23 PF01135 PCMT: Protein-L-isoas 99.2 1.5E-10 3.2E-15 99.4 8.9 118 24-149 55-174 (209)
24 COG2519 GCD14 tRNA(1-methylade 99.1 8.4E-10 1.8E-14 97.0 11.4 134 8-150 61-198 (256)
25 PRK00121 trmB tRNA (guanine-N( 99.1 2.8E-10 6.2E-15 96.3 7.8 126 11-145 7-154 (202)
26 COG2242 CobL Precorrin-6B meth 99.0 4.2E-09 9.1E-14 89.0 13.1 116 29-152 22-140 (187)
27 PRK01581 speE spermidine synth 99.0 8.6E-10 1.9E-14 101.8 9.6 105 36-147 145-268 (374)
28 PLN02366 spermidine synthase 99.0 4.6E-09 1E-13 95.0 11.0 112 27-145 72-204 (308)
29 PRK14902 16S rRNA methyltransf 99.0 2.4E-08 5.2E-13 93.9 16.1 121 24-150 233-382 (444)
30 PRK13943 protein-L-isoaspartat 98.9 1.2E-08 2.6E-13 92.8 12.4 112 26-145 65-178 (322)
31 PRK00811 spermidine synthase; 98.9 7.5E-09 1.6E-13 92.2 10.4 101 39-146 74-190 (283)
32 PRK15128 23S rRNA m(5)C1962 me 98.9 4E-09 8.6E-14 98.4 8.8 102 38-147 217-339 (396)
33 PF08704 GCD14: tRNA methyltra 98.9 2.9E-08 6.3E-13 87.3 13.1 128 12-146 11-145 (247)
34 PF13847 Methyltransf_31: Meth 98.9 1.3E-08 2.7E-13 81.6 9.7 103 40-149 2-112 (152)
35 PRK10909 rsmD 16S rRNA m(2)G96 98.9 3.9E-08 8.5E-13 83.7 11.9 107 31-146 43-158 (199)
36 PRK11783 rlmL 23S rRNA m(2)G24 98.8 1.5E-08 3.2E-13 100.6 10.1 109 34-150 531-659 (702)
37 TIGR00537 hemK_rel_arch HemK-r 98.8 3.4E-08 7.3E-13 81.4 10.6 83 28-121 6-89 (179)
38 PLN02823 spermine synthase 98.8 2.5E-08 5.5E-13 91.2 10.6 101 38-145 100-218 (336)
39 TIGR02752 MenG_heptapren 2-hep 98.8 4.5E-08 9.7E-13 83.2 11.4 102 38-145 42-149 (231)
40 PRK14901 16S rRNA methyltransf 98.8 1.4E-07 3E-12 88.6 15.6 155 25-187 236-431 (434)
41 PRK11036 putative S-adenosyl-L 98.7 8.4E-08 1.8E-12 83.4 11.0 107 28-145 33-147 (255)
42 PRK14903 16S rRNA methyltransf 98.7 1E-07 2.2E-12 89.6 12.1 123 24-152 220-371 (431)
43 PRK14904 16S rRNA methyltransf 98.7 1.2E-07 2.5E-12 89.4 12.2 119 24-149 233-379 (445)
44 TIGR03533 L3_gln_methyl protei 98.7 1.4E-07 3E-12 84.1 11.4 116 24-147 100-251 (284)
45 TIGR00417 speE spermidine synt 98.7 9.8E-08 2.1E-12 84.2 10.3 101 39-146 70-185 (270)
46 PRK10901 16S rRNA methyltransf 98.7 1.8E-07 4E-12 87.6 12.1 122 25-153 228-379 (427)
47 TIGR00446 nop2p NOL1/NOP2/sun 98.6 3.6E-07 7.7E-12 80.5 11.9 117 26-148 56-200 (264)
48 TIGR00091 tRNA (guanine-N(7)-) 98.6 2.2E-07 4.7E-12 78.0 9.7 98 40-144 15-129 (194)
49 PRK11873 arsM arsenite S-adeno 98.6 4.1E-07 8.8E-12 79.6 11.7 109 37-152 73-188 (272)
50 COG2226 UbiE Methylase involve 98.6 6.6E-07 1.4E-11 78.4 12.1 109 36-153 46-162 (238)
51 PF05175 MTS: Methyltransferas 98.6 5.3E-07 1.1E-11 74.2 11.0 105 31-143 21-136 (170)
52 PRK03612 spermidine synthase; 98.6 3.3E-07 7.2E-12 88.2 11.1 101 39-146 295-414 (521)
53 PRK04266 fibrillarin; Provisio 98.6 4.5E-07 9.8E-12 78.6 10.7 113 27-146 56-175 (226)
54 PLN02244 tocopherol O-methyltr 98.6 1.1E-06 2.4E-11 80.1 13.6 109 29-146 98-222 (340)
55 PF13659 Methyltransf_26: Meth 98.6 2.6E-07 5.6E-12 70.0 7.8 95 43-145 2-113 (117)
56 PRK11805 N5-glutamine S-adenos 98.6 6.4E-07 1.4E-11 80.9 11.4 114 25-146 113-262 (307)
57 PRK01683 trans-aconitate 2-met 98.6 1.4E-06 3E-11 75.4 13.0 97 38-146 28-129 (258)
58 TIGR00477 tehB tellurite resis 98.5 5.4E-07 1.2E-11 75.7 9.7 97 36-143 25-129 (195)
59 TIGR00095 RNA methyltransferas 98.5 7.7E-07 1.7E-11 74.9 10.6 109 31-147 39-159 (189)
60 TIGR03534 RF_mod_PrmC protein- 98.5 1.5E-06 3.3E-11 74.2 12.5 89 25-121 69-161 (251)
61 TIGR00563 rsmB ribosomal RNA s 98.5 9.5E-07 2.1E-11 82.7 12.2 119 25-150 222-371 (426)
62 PRK15451 tRNA cmo(5)U34 methyl 98.5 2.4E-06 5.2E-11 74.2 13.7 106 40-152 55-170 (247)
63 TIGR00740 methyltransferase, p 98.5 2.8E-06 6.1E-11 73.0 13.9 116 28-150 38-164 (239)
64 cd02440 AdoMet_MTases S-adenos 98.5 1.4E-06 3.1E-11 61.6 9.3 95 44-146 1-103 (107)
65 PRK14968 putative methyltransf 98.5 3.3E-06 7.2E-11 68.8 12.6 83 30-122 12-98 (188)
66 PF04989 CmcI: Cephalosporin h 98.5 8.4E-07 1.8E-11 76.2 9.3 123 24-150 15-150 (206)
67 PRK11207 tellurite resistance 98.5 1.2E-06 2.5E-11 73.8 10.1 95 39-143 28-130 (197)
68 PRK08317 hypothetical protein; 98.5 3.8E-06 8.2E-11 70.3 12.9 110 32-147 10-124 (241)
69 PRK00216 ubiE ubiquinone/menaq 98.5 3.9E-06 8.4E-11 70.7 13.1 99 41-145 51-156 (239)
70 PRK00517 prmA ribosomal protei 98.5 1E-06 2.2E-11 76.8 9.8 107 27-149 104-215 (250)
71 TIGR02716 C20_methyl_CrtF C-20 98.5 2E-06 4.3E-11 76.8 11.7 108 33-150 141-257 (306)
72 TIGR00536 hemK_fam HemK family 98.5 2.1E-06 4.6E-11 76.2 11.8 119 26-152 95-249 (284)
73 TIGR00406 prmA ribosomal prote 98.5 2.4E-06 5.1E-11 76.2 12.1 113 27-149 144-261 (288)
74 TIGR03587 Pse_Me-ase pseudamin 98.5 2.2E-06 4.7E-11 73.0 11.2 108 28-149 30-144 (204)
75 PRK14103 trans-aconitate 2-met 98.4 3.7E-06 8.1E-11 73.0 12.1 95 38-145 26-124 (255)
76 PRK01544 bifunctional N5-gluta 98.4 2.4E-06 5.3E-11 82.0 11.7 72 42-121 139-213 (506)
77 smart00828 PKS_MT Methyltransf 98.4 2.8E-06 6.1E-11 71.8 10.4 99 43-149 1-106 (224)
78 PTZ00098 phosphoethanolamine N 98.4 2.9E-06 6.2E-11 74.7 10.7 103 38-149 49-158 (263)
79 PRK12335 tellurite resistance 98.4 3.5E-06 7.5E-11 74.9 11.1 96 38-144 117-220 (287)
80 PF01209 Ubie_methyltran: ubiE 98.4 2E-06 4.4E-11 74.8 9.2 106 35-147 41-153 (233)
81 TIGR00479 rumA 23S rRNA (uraci 98.4 3.8E-06 8.2E-11 78.6 11.4 95 41-145 292-394 (431)
82 PLN02233 ubiquinone biosynthes 98.4 5.2E-06 1.1E-10 73.0 11.4 104 38-148 70-183 (261)
83 TIGR02072 BioC biotin biosynth 98.4 6.5E-06 1.4E-10 69.1 11.6 99 40-147 33-135 (240)
84 PRK14967 putative methyltransf 98.3 7.1E-06 1.5E-10 70.1 11.9 95 42-145 37-157 (223)
85 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 8.3E-06 1.8E-10 68.0 12.0 103 39-147 37-143 (223)
86 PRK14121 tRNA (guanine-N(7)-)- 98.3 4.6E-06 1E-10 77.9 11.4 99 40-145 121-233 (390)
87 PRK09328 N5-glutamine S-adenos 98.3 4.5E-06 9.7E-11 72.6 10.2 113 26-146 90-237 (275)
88 COG4123 Predicted O-methyltran 98.3 2.2E-06 4.7E-11 75.6 7.6 86 29-121 32-122 (248)
89 PRK03522 rumB 23S rRNA methylu 98.3 1.4E-05 3E-10 72.0 13.1 111 24-144 152-271 (315)
90 PRK05134 bifunctional 3-demeth 98.3 3.9E-06 8.5E-11 71.5 9.0 115 24-147 31-151 (233)
91 TIGR01177 conserved hypothetic 98.3 6.4E-06 1.4E-10 74.6 10.9 112 24-145 165-292 (329)
92 TIGR01983 UbiG ubiquinone bios 98.3 1.1E-05 2.4E-10 67.9 11.5 113 26-147 26-149 (224)
93 PRK10258 biotin biosynthesis p 98.3 4.7E-06 1E-10 72.0 8.8 109 26-147 27-140 (251)
94 PF13649 Methyltransf_25: Meth 98.2 2.4E-06 5.2E-11 63.8 5.7 91 45-141 1-101 (101)
95 COG0421 SpeE Spermidine syntha 98.2 9.6E-06 2.1E-10 72.7 10.4 109 30-147 66-190 (282)
96 PLN02396 hexaprenyldihydroxybe 98.2 4.3E-06 9.4E-11 76.1 8.2 99 41-148 131-236 (322)
97 PTZ00146 fibrillarin; Provisio 98.2 1.6E-05 3.4E-10 71.7 11.6 99 42-146 133-236 (293)
98 PRK13168 rumA 23S rRNA m(5)U19 98.2 2.2E-05 4.7E-10 74.0 12.9 111 25-145 277-398 (443)
99 PF08241 Methyltransf_11: Meth 98.2 5.2E-06 1.1E-10 59.5 6.4 89 46-145 1-95 (95)
100 PRK15068 tRNA mo(5)U34 methylt 98.2 1.8E-05 3.9E-10 71.8 11.3 155 40-214 121-297 (322)
101 PLN02336 phosphoethanolamine N 98.2 2.1E-05 4.6E-10 74.1 11.9 111 30-149 256-371 (475)
102 PF02353 CMAS: Mycolic acid cy 98.2 9.1E-06 2E-10 72.4 8.6 115 27-152 45-171 (273)
103 PF01564 Spermine_synth: Sperm 98.1 8.6E-06 1.9E-10 71.4 8.1 100 40-147 75-191 (246)
104 TIGR03704 PrmC_rel_meth putati 98.1 3.9E-05 8.4E-10 67.3 12.2 87 27-122 68-161 (251)
105 PRK14966 unknown domain/N5-glu 98.1 3.2E-05 7E-10 72.9 11.8 91 25-122 234-327 (423)
106 PRK11705 cyclopropane fatty ac 98.1 3E-05 6.6E-10 72.1 11.5 110 27-148 150-268 (383)
107 smart00650 rADc Ribosomal RNA 98.1 6E-05 1.3E-09 61.6 11.7 99 40-148 12-114 (169)
108 PRK06922 hypothetical protein; 98.1 4.2E-05 9E-10 75.6 12.4 113 30-150 407-541 (677)
109 PRK11088 rrmA 23S rRNA methylt 98.1 2.8E-05 6.2E-10 68.4 10.3 93 41-145 85-179 (272)
110 TIGR03840 TMPT_Se_Te thiopurin 98.1 3.6E-05 7.8E-10 66.1 10.6 94 41-145 34-150 (213)
111 PRK09489 rsmC 16S ribosomal RN 98.1 9E-05 1.9E-09 68.0 13.3 115 25-149 181-306 (342)
112 PRK15001 SAM-dependent 23S rib 98.1 5.3E-05 1.1E-09 70.6 11.8 115 25-148 213-342 (378)
113 PRK06202 hypothetical protein; 98.0 7.8E-05 1.7E-09 63.8 12.0 109 31-149 50-168 (232)
114 PF06325 PrmA: Ribosomal prote 98.0 1.4E-05 3.1E-10 72.0 7.3 115 26-150 145-262 (295)
115 PRK07580 Mg-protoporphyrin IX 98.0 0.00012 2.5E-09 61.9 12.2 102 31-145 51-163 (230)
116 TIGR03438 probable methyltrans 98.0 7.2E-05 1.6E-09 67.1 11.4 115 27-147 44-177 (301)
117 PRK11188 rrmJ 23S rRNA methylt 98.0 3.6E-05 7.8E-10 65.7 8.8 97 40-152 50-168 (209)
118 TIGR02085 meth_trns_rumB 23S r 98.0 0.00011 2.4E-09 68.0 12.6 115 24-147 212-335 (374)
119 PLN02336 phosphoethanolamine N 98.0 5.5E-05 1.2E-09 71.3 10.8 103 38-150 34-146 (475)
120 COG0220 Predicted S-adenosylme 98.0 5.1E-05 1.1E-09 66.1 9.8 105 34-144 41-161 (227)
121 PRK13255 thiopurine S-methyltr 98.0 8.4E-05 1.8E-09 64.0 10.5 90 42-142 38-150 (218)
122 TIGR00438 rrmJ cell division p 97.9 8.3E-05 1.8E-09 61.7 10.0 98 35-146 26-145 (188)
123 TIGR00452 methyltransferase, p 97.9 0.00019 4.1E-09 65.3 13.1 120 24-152 99-230 (314)
124 PRK05031 tRNA (uracil-5-)-meth 97.9 9.6E-05 2.1E-09 68.1 10.9 101 25-134 187-309 (362)
125 KOG2904 Predicted methyltransf 97.9 0.00012 2.5E-09 65.8 10.7 118 24-148 125-286 (328)
126 PLN02490 MPBQ/MSBQ methyltrans 97.9 0.00012 2.6E-09 67.3 10.5 95 41-145 113-213 (340)
127 PRK11933 yebU rRNA (cytosine-C 97.9 0.00017 3.8E-09 68.9 11.9 122 25-152 95-247 (470)
128 PF03602 Cons_hypoth95: Conser 97.8 2.1E-05 4.5E-10 66.2 4.7 111 29-147 29-153 (183)
129 TIGR02143 trmA_only tRNA (urac 97.8 0.00023 5E-09 65.4 11.9 108 25-144 178-308 (353)
130 TIGR00308 TRM1 tRNA(guanine-26 97.8 0.00012 2.6E-09 68.0 10.1 107 33-146 33-146 (374)
131 COG2890 HemK Methylase of poly 97.8 9.7E-05 2.1E-09 66.0 9.0 87 25-120 92-182 (280)
132 PRK04338 N(2),N(2)-dimethylgua 97.8 0.00035 7.6E-09 65.1 12.3 96 43-146 59-157 (382)
133 KOG1661 Protein-L-isoaspartate 97.8 0.00037 8.1E-09 60.4 11.4 108 30-144 70-191 (237)
134 TIGR02021 BchM-ChlM magnesium 97.8 0.00039 8.5E-09 58.8 11.4 94 39-145 53-156 (219)
135 COG1092 Predicted SAM-dependen 97.8 6.8E-05 1.5E-09 70.2 7.2 112 34-153 210-342 (393)
136 COG2521 Predicted archaeal met 97.7 2.2E-05 4.9E-10 69.0 3.4 104 40-152 133-249 (287)
137 PRK14896 ksgA 16S ribosomal RN 97.7 0.0002 4.2E-09 62.9 9.4 85 24-120 12-97 (258)
138 COG0742 N6-adenine-specific me 97.7 0.00034 7.3E-09 59.4 10.4 112 29-148 30-155 (187)
139 COG2230 Cfa Cyclopropane fatty 97.7 0.00031 6.8E-09 63.1 10.7 117 25-152 53-181 (283)
140 PF05711 TylF: Macrocin-O-meth 97.7 9.5E-05 2.1E-09 65.3 6.6 122 24-152 53-217 (248)
141 PF02527 GidB: rRNA small subu 97.7 0.00025 5.4E-09 59.9 8.8 96 44-153 51-150 (184)
142 COG2264 PrmA Ribosomal protein 97.7 0.00018 4E-09 65.1 8.3 112 27-149 150-265 (300)
143 COG2227 UbiG 2-polyprenyl-3-me 97.7 9.2E-05 2E-09 65.0 6.2 116 25-149 40-163 (243)
144 KOG4300 Predicted methyltransf 97.6 0.00027 5.8E-09 61.4 8.5 128 41-185 76-214 (252)
145 PF09445 Methyltransf_15: RNA 97.6 0.00018 3.9E-09 59.8 6.9 73 43-124 1-79 (163)
146 PF02390 Methyltransf_4: Putat 97.6 0.00021 4.5E-09 60.6 6.9 93 44-143 20-129 (195)
147 PF13489 Methyltransf_23: Meth 97.6 0.00036 7.8E-09 54.9 7.6 106 28-150 8-118 (161)
148 PRK00274 ksgA 16S ribosomal RN 97.5 0.00063 1.4E-08 60.2 9.5 90 9-108 3-99 (272)
149 PF08003 Methyltransf_9: Prote 97.5 0.0009 1.9E-08 60.8 10.4 107 39-153 113-225 (315)
150 COG0357 GidB Predicted S-adeno 97.5 0.00057 1.2E-08 59.2 8.6 95 42-144 68-165 (215)
151 PF08242 Methyltransf_12: Meth 97.5 9.3E-05 2E-09 54.6 3.2 91 46-143 1-99 (99)
152 KOG2915 tRNA(1-methyladenosine 97.5 0.00069 1.5E-08 60.8 8.9 91 26-123 91-186 (314)
153 PTZ00338 dimethyladenosine tra 97.4 0.0005 1.1E-08 61.9 7.9 98 24-134 19-122 (294)
154 PF03848 TehB: Tellurite resis 97.4 0.0015 3.2E-08 55.7 9.8 108 27-145 17-131 (192)
155 PF10672 Methyltrans_SAM: S-ad 97.4 0.00021 4.5E-09 64.3 4.8 104 36-147 118-239 (286)
156 PF10294 Methyltransf_16: Puta 97.4 0.0032 7E-08 52.1 11.5 103 37-148 41-158 (173)
157 COG4106 Tam Trans-aconitate me 97.4 0.00066 1.4E-08 59.3 7.3 105 33-149 22-134 (257)
158 PF03059 NAS: Nicotianamine sy 97.4 0.00073 1.6E-08 60.6 7.8 100 41-146 120-229 (276)
159 smart00138 MeTrc Methyltransfe 97.3 0.0011 2.4E-08 58.5 8.4 104 41-147 99-242 (264)
160 KOG1709 Guanidinoacetate methy 97.2 0.0037 8.1E-08 54.7 10.2 139 4-153 56-212 (271)
161 COG2263 Predicted RNA methylas 97.2 0.0043 9.4E-08 53.0 10.2 88 24-122 25-116 (198)
162 PHA03412 putative methyltransf 97.1 0.0066 1.4E-07 53.5 11.4 115 27-152 37-168 (241)
163 PLN02585 magnesium protoporphy 97.1 0.0072 1.6E-07 55.0 12.0 92 41-146 144-249 (315)
164 PRK05785 hypothetical protein; 97.1 0.0047 1E-07 53.2 10.1 95 31-140 40-140 (226)
165 TIGR02081 metW methionine bios 97.1 0.0014 3E-08 54.6 6.5 70 41-123 13-84 (194)
166 COG2813 RsmC 16S RNA G1207 met 97.1 0.0062 1.3E-07 55.2 10.9 114 24-147 142-267 (300)
167 PLN02672 methionine S-methyltr 97.0 0.0031 6.7E-08 65.8 9.6 89 25-120 98-209 (1082)
168 PF05401 NodS: Nodulation prot 97.0 0.0021 4.5E-08 55.2 7.0 96 40-147 42-146 (201)
169 KOG1271 Methyltransferases [Ge 97.0 0.0042 9.2E-08 53.1 8.5 114 31-152 53-186 (227)
170 PRK11727 23S rRNA mA1618 methy 97.0 0.0089 1.9E-07 54.7 11.1 112 3-121 52-196 (321)
171 TIGR00755 ksgA dimethyladenosi 97.0 0.0026 5.7E-08 55.4 7.2 75 24-107 12-86 (253)
172 PF05185 PRMT5: PRMT5 arginine 96.9 0.0061 1.3E-07 58.1 9.7 113 30-148 171-298 (448)
173 KOG1540 Ubiquinone biosynthesi 96.8 0.01 2.2E-07 53.1 9.6 96 43-145 102-212 (296)
174 COG3963 Phospholipid N-methylt 96.8 0.0056 1.2E-07 51.6 7.5 112 26-144 33-153 (194)
175 PRK00536 speE spermidine synth 96.7 0.014 3E-07 52.0 10.0 97 36-147 67-171 (262)
176 PHA03411 putative methyltransf 96.7 0.0087 1.9E-07 53.8 8.4 75 38-123 61-135 (279)
177 PF00891 Methyltransf_2: O-met 96.7 0.0045 9.8E-08 53.1 6.2 104 34-152 93-205 (241)
178 COG3510 CmcI Cephalosporin hyd 96.6 0.03 6.4E-07 48.3 10.8 121 24-152 52-185 (237)
179 COG0030 KsgA Dimethyladenosine 96.6 0.0089 1.9E-07 53.2 7.5 87 25-121 14-102 (259)
180 PRK01747 mnmC bifunctional tRN 96.5 0.015 3.2E-07 57.4 9.4 102 41-146 57-205 (662)
181 PRK01544 bifunctional N5-gluta 96.4 0.022 4.7E-07 55.0 9.9 98 40-143 346-458 (506)
182 KOG3191 Predicted N6-DNA-methy 96.3 0.019 4.2E-07 49.0 7.9 77 38-121 40-117 (209)
183 PF05724 TPMT: Thiopurine S-me 96.3 0.028 6.1E-07 48.5 9.1 107 25-143 22-151 (218)
184 PRK13256 thiopurine S-methyltr 96.3 0.033 7.1E-07 48.6 9.2 97 42-149 44-165 (226)
185 PF07021 MetW: Methionine bios 96.1 0.022 4.7E-07 48.7 7.0 91 43-148 15-112 (193)
186 PRK04148 hypothetical protein; 96.1 0.024 5.1E-07 45.8 6.8 94 28-134 3-98 (134)
187 PRK00050 16S rRNA m(4)C1402 me 96.0 0.028 6.2E-07 50.9 8.0 80 42-128 20-104 (296)
188 PRK10742 putative methyltransf 96.0 0.02 4.4E-07 50.7 6.8 80 35-123 77-173 (250)
189 PF06080 DUF938: Protein of un 96.0 0.06 1.3E-06 46.4 9.5 116 29-151 11-145 (204)
190 PF02475 Met_10: Met-10+ like- 96.0 0.031 6.7E-07 47.8 7.6 96 39-143 99-198 (200)
191 KOG1270 Methyltransferases [Co 96.0 0.014 3.1E-07 52.2 5.6 130 3-148 47-196 (282)
192 PF00398 RrnaAD: Ribosomal RNA 95.5 0.057 1.2E-06 47.4 7.7 75 24-107 13-87 (262)
193 KOG1499 Protein arginine N-met 95.3 0.15 3.3E-06 47.1 9.9 98 39-148 58-168 (346)
194 KOG3010 Methyltransferase [Gen 95.2 0.064 1.4E-06 47.5 6.7 109 30-147 21-137 (261)
195 COG4262 Predicted spermidine s 95.0 0.14 3E-06 48.2 8.8 99 39-146 287-406 (508)
196 PF13679 Methyltransf_32: Meth 95.0 0.21 4.5E-06 39.7 8.7 72 29-103 9-91 (141)
197 KOG2361 Predicted methyltransf 94.9 0.064 1.4E-06 47.6 6.0 103 41-148 71-184 (264)
198 COG2520 Predicted methyltransf 94.9 0.3 6.4E-06 45.2 10.6 115 29-152 176-294 (341)
199 PF05958 tRNA_U5-meth_tr: tRNA 94.9 0.12 2.6E-06 47.5 8.1 102 24-134 176-299 (352)
200 PF12147 Methyltransf_20: Puta 94.9 0.61 1.3E-05 42.5 12.3 126 25-153 119-255 (311)
201 TIGR01444 fkbM_fam methyltrans 94.8 0.12 2.7E-06 40.1 6.8 55 44-103 1-57 (143)
202 COG1041 Predicted DNA modifica 94.7 0.34 7.5E-06 44.9 10.4 110 24-144 180-307 (347)
203 KOG2899 Predicted methyltransf 94.6 0.15 3.2E-06 45.5 7.4 52 33-89 49-101 (288)
204 COG2265 TrmA SAM-dependent met 94.5 0.42 9E-06 45.5 10.7 116 24-148 272-398 (432)
205 PF01189 Nol1_Nop2_Fmu: NOL1/N 94.2 0.14 3E-06 45.8 6.6 94 24-123 68-165 (283)
206 TIGR00478 tly hemolysin TlyA f 93.5 0.12 2.6E-06 45.0 4.7 74 41-124 75-153 (228)
207 COG3897 Predicted methyltransf 93.5 0.11 2.4E-06 44.9 4.3 101 39-153 77-182 (218)
208 PF01170 UPF0020: Putative RNA 93.5 0.42 9.1E-06 39.7 7.8 118 24-146 11-150 (179)
209 KOG0820 Ribosomal RNA adenine 93.4 0.35 7.7E-06 43.8 7.5 84 26-120 43-129 (315)
210 KOG2793 Putative N2,N2-dimethy 93.4 0.052 1.1E-06 48.1 2.2 15 41-55 86-100 (248)
211 PRK13699 putative methylase; P 92.9 0.099 2.1E-06 45.3 3.3 48 96-145 2-70 (227)
212 COG0144 Sun tRNA and rRNA cyto 92.7 0.95 2.1E-05 41.8 9.6 125 24-153 139-294 (355)
213 KOG2730 Methylase [General fun 92.5 0.19 4.2E-06 44.2 4.5 99 25-133 76-183 (263)
214 PF09243 Rsm22: Mitochondrial 92.5 1.1 2.3E-05 39.8 9.4 107 39-152 31-145 (274)
215 PHA01634 hypothetical protein 92.4 0.76 1.7E-05 37.4 7.4 83 40-134 27-110 (156)
216 COG4076 Predicted RNA methylas 92.0 0.41 8.8E-06 41.5 5.8 66 30-103 22-89 (252)
217 COG4976 Predicted methyltransf 92.0 0.042 9.1E-07 48.7 -0.2 104 30-147 111-225 (287)
218 KOG1562 Spermidine synthase [A 91.9 0.59 1.3E-05 42.8 7.0 102 35-145 115-234 (337)
219 PF01269 Fibrillarin: Fibrilla 91.9 1.7 3.7E-05 38.2 9.6 97 42-144 74-175 (229)
220 PF01728 FtsJ: FtsJ-like methy 91.7 0.27 5.9E-06 40.2 4.3 78 28-122 5-99 (181)
221 PLN02232 ubiquinone biosynthes 91.7 0.82 1.8E-05 37.0 7.1 70 76-148 3-82 (160)
222 PF12242 Eno-Rase_NADH_b: NAD( 91.3 0.6 1.3E-05 34.4 5.3 32 38-71 35-66 (78)
223 PF05430 Methyltransf_30: S-ad 91.1 0.1 2.2E-06 41.4 1.2 51 96-148 33-91 (124)
224 PF04445 SAM_MT: Putative SAM- 90.7 1.2 2.5E-05 39.3 7.5 71 44-123 78-160 (234)
225 PF04816 DUF633: Family of unk 90.5 1 2.3E-05 38.5 6.9 97 45-148 1-103 (205)
226 KOG3420 Predicted RNA methylas 90.3 0.74 1.6E-05 38.3 5.5 90 26-123 29-123 (185)
227 PF01861 DUF43: Protein of unk 89.6 1 2.2E-05 39.8 6.3 112 24-145 24-147 (243)
228 KOG0053 Cystathionine beta-lya 89.6 2.3 4.9E-05 40.4 8.9 123 24-152 74-204 (409)
229 PRK11524 putative methyltransf 89.0 0.33 7.1E-06 43.2 2.8 26 96-123 9-36 (284)
230 COG5459 Predicted rRNA methyla 88.7 0.63 1.4E-05 43.7 4.4 126 8-145 80-223 (484)
231 KOG1541 Predicted protein carb 87.7 2.3 4.9E-05 37.7 7.0 81 27-120 35-118 (270)
232 KOG3178 Hydroxyindole-O-methyl 87.5 3.7 8E-05 38.1 8.7 96 42-152 178-281 (342)
233 PF05891 Methyltransf_PK: AdoM 87.4 1.2 2.5E-05 38.9 5.1 117 28-153 37-168 (218)
234 KOG1500 Protein arginine N-met 86.9 1.5 3.2E-05 41.2 5.7 71 40-121 176-250 (517)
235 PRK05703 flhF flagellar biosyn 86.5 6.2 0.00013 37.4 9.9 92 30-123 200-308 (424)
236 PF02005 TRM: N2,N2-dimethylgu 86.5 2.4 5.2E-05 39.7 7.0 101 41-148 49-155 (377)
237 TIGR03499 FlhF flagellar biosy 86.3 3.2 7E-05 36.9 7.5 80 42-123 194-281 (282)
238 PF03141 Methyltransf_29: Puta 85.8 0.98 2.1E-05 43.8 4.1 96 40-149 116-221 (506)
239 COG1867 TRM1 N2,N2-dimethylgua 85.8 5.1 0.00011 37.7 8.6 103 42-152 53-162 (380)
240 PF02254 TrkA_N: TrkA-N domain 85.7 2.1 4.5E-05 32.0 5.2 66 51-125 5-73 (116)
241 PF01053 Cys_Met_Meta_PP: Cys/ 85.6 2.6 5.7E-05 39.4 6.8 122 24-152 52-183 (386)
242 PRK08247 cystathionine gamma-s 85.5 8.2 0.00018 35.2 9.9 121 24-150 49-176 (366)
243 PRK11760 putative 23S rRNA C24 85.4 5.8 0.00012 37.0 8.8 96 24-134 184-289 (357)
244 PF07015 VirC1: VirC1 protein; 85.2 1.6 3.4E-05 38.4 4.8 71 51-124 12-93 (231)
245 PRK05720 mtnA methylthioribose 85.1 4.2 9.2E-05 37.6 7.8 76 44-123 149-234 (344)
246 COG1889 NOP1 Fibrillarin-like 84.6 12 0.00027 32.7 9.9 100 39-145 74-179 (231)
247 PRK11783 rlmL 23S rRNA m(2)G24 84.2 15 0.00032 37.0 11.9 95 24-121 172-310 (702)
248 PF08123 DOT1: Histone methyla 83.9 5 0.00011 34.4 7.2 107 37-150 38-161 (205)
249 PRK06176 cystathionine gamma-s 83.9 6.9 0.00015 36.2 8.8 123 24-152 47-176 (380)
250 TIGR02987 met_A_Alw26 type II 82.8 7.9 0.00017 37.3 9.0 91 26-120 9-118 (524)
251 TIGR01627 A_thal_3515 uncharac 82.8 16 0.00034 32.0 9.8 71 8-85 5-76 (225)
252 PF02384 N6_Mtase: N-6 DNA Met 82.7 4.3 9.3E-05 36.0 6.7 92 25-121 30-132 (311)
253 TIGR00006 S-adenosyl-methyltra 82.1 7.8 0.00017 35.3 8.2 80 41-127 20-105 (305)
254 PRK08064 cystathionine beta-ly 81.4 8.9 0.00019 35.5 8.5 122 24-152 51-180 (390)
255 PRK07810 O-succinylhomoserine 81.2 12 0.00026 34.9 9.3 123 24-152 67-197 (403)
256 TIGR01324 cysta_beta_ly_B cyst 81.2 21 0.00046 33.0 10.9 123 24-152 47-177 (377)
257 COG1189 Predicted rRNA methyla 80.9 6.8 0.00015 34.8 7.0 110 25-145 60-176 (245)
258 PRK08114 cystathionine beta-ly 80.3 38 0.00083 31.8 12.3 125 22-152 57-191 (395)
259 PRK05939 hypothetical protein; 80.0 19 0.00042 33.5 10.2 123 24-152 44-173 (397)
260 PRK07671 cystathionine beta-ly 79.7 14 0.00029 34.2 9.1 124 24-152 47-176 (377)
261 PRK13656 trans-2-enoyl-CoA red 79.6 8.2 0.00018 36.6 7.6 84 40-125 39-142 (398)
262 PRK10611 chemotaxis methyltran 79.3 9.8 0.00021 34.3 7.8 119 26-147 99-262 (287)
263 TIGR01007 eps_fam capsular exo 78.9 16 0.00034 30.2 8.5 43 39-82 14-58 (204)
264 PRK06194 hypothetical protein; 78.7 8.3 0.00018 33.1 7.0 80 41-124 5-93 (287)
265 COG0293 FtsJ 23S rRNA methylas 78.3 3.7 8E-05 35.5 4.5 97 40-150 44-162 (205)
266 PRK05967 cystathionine beta-ly 78.2 27 0.00057 32.8 10.6 123 24-152 61-191 (395)
267 TIGR01329 cysta_beta_ly_E cyst 78.2 12 0.00026 34.5 8.2 123 24-152 44-173 (378)
268 PRK07269 cystathionine gamma-s 78.2 19 0.00041 33.1 9.5 123 24-152 51-178 (364)
269 PRK09291 short chain dehydroge 77.3 7.5 0.00016 32.6 6.2 78 43-123 3-82 (257)
270 PRK07050 cystathionine beta-ly 77.1 36 0.00079 31.5 11.2 124 23-152 61-192 (394)
271 COG0626 MetC Cystathionine bet 76.7 16 0.00035 34.5 8.7 124 24-152 60-191 (396)
272 cd00315 Cyt_C5_DNA_methylase C 76.2 21 0.00046 31.5 8.9 92 44-149 2-113 (275)
273 KOG2187 tRNA uracil-5-methyltr 76.2 2.7 5.8E-05 41.1 3.4 101 25-134 363-476 (534)
274 PF00106 adh_short: short chai 75.5 7.3 0.00016 30.3 5.3 78 43-123 1-89 (167)
275 PRK05772 translation initiatio 75.0 10 0.00022 35.5 6.8 77 44-123 169-255 (363)
276 PF03291 Pox_MCEL: mRNA cappin 74.5 16 0.00035 33.5 7.9 110 31-145 48-184 (331)
277 TIGR03590 PseG pseudaminic aci 74.4 13 0.00029 32.7 7.2 87 57-149 19-113 (279)
278 KOG1371 UDP-glucose 4-epimeras 74.0 8.2 0.00018 35.8 5.8 79 41-122 1-85 (343)
279 PRK06371 translation initiatio 74.0 12 0.00025 34.7 6.8 66 56-123 155-224 (329)
280 COG2384 Predicted SAM-dependen 73.6 35 0.00076 30.0 9.3 99 43-148 18-122 (226)
281 PRK13512 coenzyme A disulfide 73.6 67 0.0015 30.0 12.0 112 29-149 135-265 (438)
282 PRK08574 cystathionine gamma-s 73.3 24 0.00052 32.7 8.9 123 24-152 50-179 (385)
283 PRK06702 O-acetylhomoserine am 73.0 31 0.00067 32.8 9.7 119 24-149 58-186 (432)
284 KOG2940 Predicted methyltransf 72.3 3.6 7.8E-05 36.8 2.9 100 42-153 73-178 (325)
285 KOG1122 tRNA and rRNA cytosine 71.7 31 0.00068 33.2 9.2 78 43-126 243-324 (460)
286 PRK09496 trkA potassium transp 71.1 33 0.00071 31.8 9.3 92 44-144 2-97 (453)
287 TIGR00524 eIF-2B_rel eIF-2B al 71.1 14 0.0003 33.6 6.6 77 43-123 120-206 (303)
288 TIGR00512 salvage_mtnA S-methy 71.1 25 0.00055 32.4 8.3 65 56-123 165-234 (331)
289 TIGR03439 methyl_EasF probable 70.9 46 0.001 30.5 10.0 105 36-144 70-195 (319)
290 COG1893 ApbA Ketopantoate redu 70.9 16 0.00036 33.0 7.0 92 44-144 2-98 (307)
291 PRK08249 cystathionine gamma-s 70.6 27 0.00059 32.5 8.6 120 24-152 61-191 (398)
292 PLN02427 UDP-apiose/xylose syn 70.6 9.3 0.0002 34.7 5.4 78 40-123 12-95 (386)
293 PRK07503 methionine gamma-lyas 70.0 32 0.00068 32.0 8.9 123 24-152 62-192 (403)
294 PRK08248 O-acetylhomoserine am 69.5 36 0.00077 32.2 9.2 124 23-152 60-191 (431)
295 PRK06434 cystathionine gamma-l 69.3 53 0.0012 30.6 10.2 119 23-149 60-185 (384)
296 PLN02509 cystathionine beta-ly 69.0 51 0.0011 31.6 10.3 122 25-152 131-259 (464)
297 PF07942 N2227: N2227-like pro 69.0 4.6 0.0001 36.2 3.0 46 96-144 146-199 (270)
298 PF08351 DUF1726: Domain of un 68.6 7.5 0.00016 29.1 3.6 32 114-145 11-43 (92)
299 PRK05876 short chain dehydroge 68.5 21 0.00046 30.8 7.1 81 40-123 4-92 (275)
300 cd05292 LDH_2 A subgroup of L- 68.4 75 0.0016 28.5 10.7 72 44-124 2-77 (308)
301 PF00072 Response_reg: Respons 67.8 10 0.00022 27.2 4.2 68 75-145 3-77 (112)
302 PRK06172 short chain dehydroge 67.6 25 0.00055 29.4 7.2 79 41-123 6-93 (253)
303 PRK06139 short chain dehydroge 67.1 20 0.00043 32.4 6.8 79 41-123 6-93 (330)
304 cd01339 LDH-like_MDH L-lactate 67.1 26 0.00057 31.1 7.5 90 48-147 4-116 (300)
305 PTZ00082 L-lactate dehydrogena 66.7 42 0.00091 30.5 8.8 99 39-148 3-130 (321)
306 PRK12826 3-ketoacyl-(acyl-carr 66.4 27 0.00059 28.8 7.1 81 40-124 4-93 (251)
307 PRK07109 short chain dehydroge 66.3 23 0.0005 31.8 7.0 80 40-123 6-94 (334)
308 PRK05968 hypothetical protein; 66.2 95 0.0021 28.6 11.2 123 24-152 60-189 (389)
309 cd02037 MRP-like MRP (Multiple 66.2 7.7 0.00017 31.1 3.5 88 51-146 10-99 (169)
310 PRK08861 cystathionine gamma-s 65.8 43 0.00093 31.2 8.9 123 24-152 50-180 (388)
311 PRK07582 cystathionine gamma-l 65.2 64 0.0014 29.5 9.8 119 24-150 48-172 (366)
312 COG0500 SmtA SAM-dependent met 65.1 44 0.00095 23.2 12.8 105 37-149 43-157 (257)
313 PRK09496 trkA potassium transp 65.0 28 0.00061 32.2 7.5 74 42-123 231-306 (453)
314 PF05971 Methyltransf_10: Prot 64.7 1E+02 0.0022 28.1 10.8 112 3-120 43-183 (299)
315 PRK06249 2-dehydropantoate 2-r 64.6 30 0.00065 30.8 7.4 92 43-144 6-103 (313)
316 TIGR01326 OAH_OAS_sulfhy OAH/O 64.2 55 0.0012 30.6 9.3 125 22-152 52-184 (418)
317 PRK09028 cystathionine beta-ly 64.1 86 0.0019 29.4 10.5 123 24-152 58-188 (394)
318 PRK08133 O-succinylhomoserine 64.0 59 0.0013 30.0 9.4 123 24-152 58-188 (390)
319 COG3007 Uncharacterized paraqu 63.7 27 0.00059 32.3 6.8 80 39-122 38-139 (398)
320 PRK08045 cystathionine gamma-s 63.6 39 0.00085 31.3 8.1 123 24-152 49-179 (386)
321 COG1748 LYS9 Saccharopine dehy 63.6 40 0.00087 31.9 8.2 86 43-134 2-88 (389)
322 PRK07504 O-succinylhomoserine 63.5 33 0.00072 31.8 7.7 122 24-152 62-192 (398)
323 PRK12727 flagellar biosynthesi 63.4 46 0.00099 33.0 8.8 95 29-125 328-439 (559)
324 COG0116 Predicted N6-adenine-s 63.0 56 0.0012 30.9 9.0 74 73-148 257-347 (381)
325 PRK05613 O-acetylhomoserine am 62.8 94 0.002 29.5 10.7 123 24-152 66-197 (437)
326 PRK09880 L-idonate 5-dehydroge 62.6 63 0.0014 28.7 9.1 92 42-147 170-266 (343)
327 PF02636 Methyltransf_28: Puta 62.3 28 0.0006 30.1 6.6 44 42-88 19-68 (252)
328 PRK06234 methionine gamma-lyas 62.3 1.1E+02 0.0023 28.4 10.8 124 24-152 61-193 (400)
329 PRK05650 short chain dehydroge 62.0 34 0.00074 29.1 7.0 77 43-123 1-86 (270)
330 PRK12823 benD 1,6-dihydroxycyc 62.0 38 0.00082 28.4 7.2 80 40-123 6-93 (260)
331 PLN02989 cinnamyl-alcohol dehy 61.9 25 0.00055 30.8 6.3 78 42-123 5-86 (325)
332 PRK07812 O-acetylhomoserine am 61.9 81 0.0018 29.9 10.1 124 23-152 65-197 (436)
333 PRK05866 short chain dehydroge 61.8 29 0.00063 30.4 6.7 77 42-122 40-125 (293)
334 PRK08339 short chain dehydroge 61.4 31 0.00067 29.5 6.6 79 41-123 7-94 (263)
335 PRK07523 gluconate 5-dehydroge 61.3 31 0.00067 28.9 6.6 79 41-123 9-96 (255)
336 PRK06124 gluconate 5-dehydroge 61.2 35 0.00076 28.6 6.8 78 41-122 10-96 (256)
337 PRK06522 2-dehydropantoate 2-r 61.2 43 0.00092 29.1 7.6 91 44-144 2-97 (304)
338 PF04378 RsmJ: Ribosomal RNA s 60.9 9.5 0.00021 33.8 3.4 99 25-134 42-148 (245)
339 PRK05867 short chain dehydroge 60.9 33 0.00071 28.8 6.7 79 41-123 8-95 (253)
340 PRK07904 short chain dehydroge 60.6 27 0.00058 29.8 6.1 80 39-122 5-95 (253)
341 TIGR03029 EpsG chain length de 60.6 47 0.001 28.7 7.7 30 114-144 212-242 (274)
342 PRK07478 short chain dehydroge 60.4 43 0.00093 28.0 7.3 79 41-123 5-92 (254)
343 cd00614 CGS_like CGS_like: Cys 60.3 52 0.0011 29.9 8.3 123 24-152 37-167 (369)
344 COG0569 TrkA K+ transport syst 59.7 24 0.00052 30.3 5.6 96 45-148 3-103 (225)
345 PRK12939 short chain dehydroge 59.6 40 0.00087 27.8 6.9 78 41-122 6-92 (250)
346 PRK06223 malate dehydrogenase; 59.5 86 0.0019 27.7 9.3 96 43-147 3-120 (307)
347 PRK08226 short chain dehydroge 59.3 47 0.001 27.9 7.4 79 41-123 5-91 (263)
348 PRK07049 methionine gamma-lyas 59.2 91 0.002 29.3 9.9 120 24-150 80-220 (427)
349 PLN02662 cinnamyl-alcohol dehy 59.2 34 0.00073 29.8 6.6 77 43-123 5-85 (322)
350 COG1419 FlhF Flagellar GTP-bin 58.9 13 0.00027 35.4 4.0 86 42-128 203-295 (407)
351 PRK07063 short chain dehydroge 58.8 47 0.001 27.9 7.2 79 41-123 6-95 (260)
352 PRK06460 hypothetical protein; 58.8 78 0.0017 29.1 9.2 123 24-152 42-172 (376)
353 PRK12921 2-dehydropantoate 2-r 58.7 39 0.00084 29.5 6.9 33 113-145 67-100 (305)
354 PRK06914 short chain dehydroge 58.6 65 0.0014 27.4 8.2 77 43-123 4-90 (280)
355 PRK06036 translation initiatio 58.6 46 0.001 30.8 7.6 65 56-123 166-235 (339)
356 PRK08277 D-mannonate oxidoredu 58.5 40 0.00086 28.8 6.8 79 41-123 9-96 (278)
357 cd00300 LDH_like L-lactate deh 58.5 89 0.0019 27.9 9.3 71 48-126 4-78 (300)
358 PRK06113 7-alpha-hydroxysteroi 58.5 52 0.0011 27.6 7.5 78 42-123 11-97 (255)
359 PRK10669 putative cation:proto 58.5 17 0.00036 35.3 4.9 66 50-123 423-490 (558)
360 TIGR02080 O_succ_thio_ly O-suc 58.1 79 0.0017 29.2 9.1 124 23-152 47-178 (382)
361 COG1064 AdhP Zn-dependent alco 58.1 60 0.0013 30.1 8.2 94 40-148 165-261 (339)
362 PF12692 Methyltransf_17: S-ad 57.8 6.6 0.00014 32.6 1.7 98 42-151 29-138 (160)
363 KOG1501 Arginine N-methyltrans 57.6 17 0.00036 35.5 4.5 61 44-110 69-132 (636)
364 PRK07102 short chain dehydroge 57.0 38 0.00083 28.1 6.4 76 43-122 2-84 (243)
365 KOG3201 Uncharacterized conser 56.7 5.1 0.00011 34.0 0.9 96 40-144 28-138 (201)
366 PRK07454 short chain dehydroge 56.7 46 0.001 27.5 6.8 78 42-123 6-92 (241)
367 TIGR01963 PHB_DH 3-hydroxybuty 56.5 55 0.0012 27.1 7.2 76 43-122 2-86 (255)
368 PRK07024 short chain dehydroge 56.5 41 0.00088 28.4 6.5 76 43-123 3-87 (257)
369 PRK11889 flhF flagellar biosyn 56.5 28 0.00061 33.4 5.9 83 41-127 240-333 (436)
370 PRK08589 short chain dehydroge 56.3 53 0.0012 28.1 7.3 79 41-123 5-91 (272)
371 PRK05599 hypothetical protein; 56.3 51 0.0011 27.8 7.1 75 44-123 2-86 (246)
372 KOG2798 Putative trehalase [Ca 56.2 10 0.00022 35.2 2.8 46 96-144 240-293 (369)
373 TIGR01389 recQ ATP-dependent D 56.0 90 0.002 30.5 9.5 119 24-148 13-136 (591)
374 PRK06084 O-acetylhomoserine am 55.8 55 0.0012 30.8 7.8 122 24-152 55-185 (425)
375 KOG1975 mRNA cap methyltransfe 55.8 82 0.0018 29.6 8.5 106 35-145 109-235 (389)
376 PRK08134 O-acetylhomoserine am 55.8 1E+02 0.0022 29.2 9.6 122 24-152 61-191 (433)
377 TIGR02415 23BDH acetoin reduct 55.7 51 0.0011 27.4 6.9 76 43-122 1-85 (254)
378 PRK07688 thiamine/molybdopteri 55.6 90 0.002 28.6 9.0 79 41-123 23-125 (339)
379 PRK07806 short chain dehydroge 55.2 1.1E+02 0.0024 25.3 8.9 81 40-123 4-93 (248)
380 PRK06935 2-deoxy-D-gluconate 3 55.2 44 0.00094 28.1 6.5 78 41-122 14-99 (258)
381 PRK06720 hypothetical protein; 55.0 83 0.0018 25.6 7.9 80 41-123 15-102 (169)
382 PRK08335 translation initiatio 54.9 50 0.0011 29.7 7.0 72 43-123 111-186 (275)
383 TIGR01328 met_gam_lyase methio 54.9 62 0.0013 29.9 7.9 124 24-152 56-186 (391)
384 PRK08643 acetoin reductase; Va 54.8 55 0.0012 27.3 7.0 76 43-122 3-87 (256)
385 COG0300 DltE Short-chain dehyd 54.7 39 0.00084 30.3 6.2 87 40-130 4-100 (265)
386 PRK08340 glucose-1-dehydrogena 54.5 43 0.00094 28.2 6.3 74 44-122 2-84 (259)
387 PRK12726 flagellar biosynthesi 54.4 34 0.00073 32.6 6.0 90 41-134 205-307 (407)
388 PRK08334 translation initiatio 54.2 30 0.00065 32.3 5.6 66 55-123 177-247 (356)
389 PRK08217 fabG 3-ketoacyl-(acyl 54.1 64 0.0014 26.6 7.2 78 41-122 4-90 (253)
390 PRK08535 translation initiatio 54.0 58 0.0012 29.5 7.3 71 43-123 122-197 (310)
391 PLN02986 cinnamyl-alcohol dehy 53.9 42 0.00092 29.4 6.4 78 43-123 6-86 (322)
392 PRK00771 signal recognition pa 53.6 56 0.0012 31.2 7.5 106 41-149 94-217 (437)
393 PRK06197 short chain dehydroge 53.5 46 0.001 29.0 6.5 79 41-123 15-104 (306)
394 PRK08213 gluconate 5-dehydroge 53.5 58 0.0013 27.3 7.0 79 41-123 11-98 (259)
395 COG0275 Predicted S-adenosylme 53.4 43 0.00093 30.8 6.3 81 43-127 25-109 (314)
396 PRK05855 short chain dehydroge 53.2 51 0.0011 30.9 7.2 80 40-123 313-401 (582)
397 TIGR03576 pyridox_MJ0158 pyrid 53.1 1.7E+02 0.0037 26.6 10.3 118 27-152 54-180 (346)
398 PRK08945 putative oxoacyl-(acy 53.0 51 0.0011 27.5 6.5 80 39-122 9-100 (247)
399 PLN00198 anthocyanidin reducta 53.0 45 0.00098 29.5 6.4 78 43-123 10-89 (338)
400 COG1565 Uncharacterized conser 52.9 53 0.0011 30.9 7.0 43 43-88 79-127 (370)
401 PRK06138 short chain dehydroge 52.9 61 0.0013 26.8 6.9 78 41-123 4-90 (252)
402 PRK08085 gluconate 5-dehydroge 52.8 56 0.0012 27.3 6.8 80 40-123 7-95 (254)
403 PHA02518 ParA-like protein; Pr 52.5 24 0.00052 28.8 4.3 72 51-125 11-87 (211)
404 PRK10867 signal recognition pa 52.5 51 0.0011 31.5 7.0 102 42-148 100-224 (433)
405 PRK07097 gluconate 5-dehydroge 52.3 60 0.0013 27.4 6.9 79 41-123 9-96 (265)
406 TIGR03206 benzo_BadH 2-hydroxy 52.2 61 0.0013 26.8 6.8 77 43-123 4-89 (250)
407 TIGR01425 SRP54_euk signal rec 52.2 60 0.0013 31.1 7.4 102 42-148 100-223 (429)
408 PRK08416 7-alpha-hydroxysteroi 52.2 68 0.0015 27.1 7.2 80 40-122 6-95 (260)
409 PF03807 F420_oxidored: NADP o 52.1 27 0.00058 25.0 4.1 82 51-144 6-91 (96)
410 PRK06949 short chain dehydroge 51.9 66 0.0014 26.8 7.0 79 41-123 8-95 (258)
411 PRK09242 tropinone reductase; 51.9 65 0.0014 27.0 7.0 78 42-123 9-97 (257)
412 PRK12429 3-hydroxybutyrate deh 51.8 73 0.0016 26.4 7.2 79 41-123 3-90 (258)
413 PRK15181 Vi polysaccharide bio 51.8 46 0.00099 29.8 6.3 78 42-123 15-99 (348)
414 PLN02896 cinnamyl-alcohol dehy 51.5 42 0.00092 30.0 6.1 77 41-122 9-87 (353)
415 PRK03659 glutathione-regulated 51.5 29 0.00062 34.3 5.3 71 44-124 402-474 (601)
416 PRK06731 flhF flagellar biosyn 51.3 1.4E+02 0.003 26.7 9.2 90 42-134 75-176 (270)
417 PF04672 Methyltransf_19: S-ad 51.2 1.2E+02 0.0026 27.2 8.8 123 29-153 52-196 (267)
418 PLN02650 dihydroflavonol-4-red 51.2 30 0.00064 30.9 5.0 78 42-123 5-86 (351)
419 PRK07890 short chain dehydroge 51.1 71 0.0015 26.6 7.1 80 41-124 4-92 (258)
420 PRK12723 flagellar biosynthesi 51.1 24 0.00053 33.2 4.5 85 41-127 173-267 (388)
421 PRK07791 short chain dehydroge 51.0 74 0.0016 27.6 7.4 80 40-122 4-100 (286)
422 TIGR00511 ribulose_e2b2 ribose 50.8 70 0.0015 28.9 7.4 72 42-123 116-192 (301)
423 PRK07814 short chain dehydroge 50.7 70 0.0015 27.1 7.1 79 41-123 9-96 (263)
424 PRK02362 ski2-like helicase; P 50.4 1.6E+02 0.0036 29.6 10.6 118 24-149 23-147 (737)
425 PTZ00117 malate dehydrogenase; 50.0 2E+02 0.0043 26.0 10.3 98 40-147 3-123 (319)
426 PRK05854 short chain dehydroge 49.2 78 0.0017 28.0 7.4 79 41-123 13-102 (313)
427 COG0287 TyrA Prephenate dehydr 49.2 68 0.0015 28.7 6.9 98 43-152 4-102 (279)
428 PRK03562 glutathione-regulated 49.0 31 0.00067 34.3 5.1 72 43-124 401-474 (621)
429 PRK05994 O-acetylhomoserine am 48.9 1.6E+02 0.0034 27.7 9.6 122 24-152 60-190 (427)
430 TIGR01005 eps_transp_fam exopo 48.6 49 0.0011 33.3 6.5 30 114-145 655-685 (754)
431 PRK12829 short chain dehydroge 48.5 84 0.0018 26.2 7.1 81 37-123 6-95 (264)
432 PRK08303 short chain dehydroge 48.0 93 0.002 27.5 7.7 78 41-122 7-103 (305)
433 PRK12475 thiamine/molybdopteri 47.9 1.1E+02 0.0024 28.0 8.3 78 41-123 23-125 (338)
434 PRK01625 sspH acid-soluble spo 47.7 8.2 0.00018 27.0 0.6 19 198-216 22-40 (59)
435 PRK10458 DNA cytosine methylas 47.5 2.7E+02 0.0059 26.9 11.2 34 44-83 90-123 (467)
436 PRK07201 short chain dehydroge 47.4 55 0.0012 31.8 6.5 64 51-119 8-82 (657)
437 TIGR02622 CDP_4_6_dhtase CDP-g 47.4 44 0.00096 29.8 5.5 76 43-123 5-84 (349)
438 PF13460 NAD_binding_10: NADH( 47.3 36 0.00079 26.9 4.5 63 51-123 6-69 (183)
439 PRK08251 short chain dehydroge 47.0 80 0.0017 26.2 6.7 77 43-123 3-90 (248)
440 KOG2651 rRNA adenine N-6-methy 46.7 56 0.0012 31.3 6.1 55 29-89 141-195 (476)
441 PRK10309 galactitol-1-phosphat 46.6 1.3E+02 0.0029 26.5 8.5 95 41-146 160-259 (347)
442 TIGR02861 SASP_H small acid-so 46.6 9.2 0.0002 26.6 0.7 19 197-215 21-39 (58)
443 PRK11658 UDP-4-amino-4-deoxy-L 46.5 2.3E+02 0.005 25.8 13.3 137 8-152 14-160 (379)
444 TIGR01325 O_suc_HS_sulf O-succ 46.5 1.3E+02 0.0028 27.6 8.6 123 24-152 51-181 (380)
445 PF02310 B12-binding: B12 bind 46.5 28 0.00062 25.9 3.6 64 84-147 19-88 (121)
446 PRK12937 short chain dehydroge 46.0 1.2E+02 0.0027 24.8 7.7 80 41-123 4-92 (245)
447 TIGR00620 sporelyase spore pho 45.6 25 0.00053 30.3 3.4 76 40-134 21-111 (199)
448 PRK07231 fabG 3-ketoacyl-(acyl 45.4 1E+02 0.0022 25.3 7.1 78 41-123 4-90 (251)
449 PRK06181 short chain dehydroge 45.4 94 0.002 26.0 7.0 77 43-123 2-87 (263)
450 PRK09841 cryptic autophosphory 45.3 55 0.0012 33.1 6.3 41 40-81 529-571 (726)
451 PRK10416 signal recognition pa 45.3 50 0.0011 30.1 5.5 83 42-127 114-209 (318)
452 PRK14493 putative bifunctional 45.2 35 0.00076 30.5 4.4 72 50-126 10-99 (274)
453 PRK06767 methionine gamma-lyas 45.0 1.1E+02 0.0023 28.2 7.8 123 24-152 58-188 (386)
454 KOG0822 Protein kinase inhibit 44.9 58 0.0013 32.5 6.1 99 42-144 368-475 (649)
455 PRK05565 fabG 3-ketoacyl-(acyl 44.9 67 0.0015 26.3 5.9 78 43-123 6-92 (247)
456 cd08283 FDH_like_1 Glutathione 44.9 83 0.0018 28.6 7.0 45 38-87 181-226 (386)
457 PRK06114 short chain dehydroge 44.8 99 0.0021 25.9 7.1 80 41-123 7-95 (254)
458 PRK05786 fabG 3-ketoacyl-(acyl 44.5 1.2E+02 0.0025 24.9 7.3 78 41-123 4-90 (238)
459 PRK06947 glucose-1-dehydrogena 44.3 1.4E+02 0.003 24.7 7.8 78 43-123 3-89 (248)
460 PLN02827 Alcohol dehydrogenase 43.9 1.2E+02 0.0025 27.7 7.8 93 40-145 192-293 (378)
461 PRK12744 short chain dehydroge 43.7 97 0.0021 26.0 6.8 78 43-123 9-98 (257)
462 PLN02242 methionine gamma-lyas 43.6 1.7E+02 0.0038 27.4 9.1 119 24-151 73-204 (418)
463 PRK08267 short chain dehydroge 43.3 85 0.0018 26.3 6.4 75 43-123 2-86 (260)
464 PRK07811 cystathionine gamma-s 43.2 1.2E+02 0.0027 27.9 7.9 123 24-152 58-188 (388)
465 COG1087 GalE UDP-glucose 4-epi 43.2 30 0.00066 31.9 3.7 73 44-125 2-78 (329)
466 PRK05808 3-hydroxybutyryl-CoA 42.8 25 0.00055 30.7 3.1 95 43-149 4-119 (282)
467 PRK07576 short chain dehydroge 42.6 1E+02 0.0022 26.2 6.8 78 41-122 8-94 (264)
468 PRK12743 oxidoreductase; Provi 42.3 1.4E+02 0.0031 25.0 7.6 78 43-123 3-89 (256)
469 COG4098 comFA Superfamily II D 42.2 60 0.0013 30.8 5.5 105 24-134 97-225 (441)
470 PRK08278 short chain dehydroge 42.1 1.3E+02 0.0029 25.6 7.5 78 42-123 6-99 (273)
471 TIGR00959 ffh signal recogniti 42.1 71 0.0015 30.4 6.2 104 42-148 99-223 (428)
472 cd03143 A4_beta-galactosidase_ 41.8 68 0.0015 25.2 5.3 53 87-146 33-86 (154)
473 PF08532 Glyco_hydro_42M: Beta 41.8 35 0.00075 28.7 3.7 53 87-146 37-90 (207)
474 PRK05708 2-dehydropantoate 2-r 41.6 1.4E+02 0.0031 26.5 7.9 38 112-149 68-107 (305)
475 cd08230 glucose_DH Glucose deh 41.6 2.4E+02 0.0052 25.0 9.4 92 41-145 172-267 (355)
476 PRK06128 oxidoreductase; Provi 41.4 1.1E+02 0.0024 26.6 7.0 79 41-123 54-143 (300)
477 PRK13394 3-hydroxybutyrate deh 41.3 1.2E+02 0.0025 25.3 6.9 77 42-122 7-92 (262)
478 PRK07774 short chain dehydroge 41.3 1.2E+02 0.0026 25.0 7.0 77 43-123 7-92 (250)
479 PLN02214 cinnamoyl-CoA reducta 41.3 89 0.0019 28.0 6.5 77 43-123 11-90 (342)
480 PRK07062 short chain dehydroge 41.1 1.1E+02 0.0023 25.8 6.7 79 41-123 7-96 (265)
481 PRK12935 acetoacetyl-CoA reduc 41.0 1.6E+02 0.0036 24.2 7.7 81 41-124 5-94 (247)
482 PRK12481 2-deoxy-D-gluconate 3 40.9 1E+02 0.0023 25.9 6.6 78 41-123 7-92 (251)
483 TIGR01763 MalateDH_bact malate 40.9 2.7E+02 0.0058 25.0 10.1 71 44-124 3-79 (305)
484 PRK12938 acetyacetyl-CoA reduc 40.7 1.2E+02 0.0026 25.1 6.8 79 42-123 3-90 (246)
485 PRK01172 ski2-like helicase; P 40.6 2.1E+02 0.0046 28.4 9.6 103 12-121 10-118 (674)
486 cd08254 hydroxyacyl_CoA_DH 6-h 40.5 1.3E+02 0.0028 26.0 7.2 93 40-145 164-261 (338)
487 PRK11524 putative methyltransf 40.4 48 0.001 29.3 4.5 51 30-87 195-247 (284)
488 PLN03209 translocon at the inn 40.3 92 0.002 31.0 6.8 80 40-123 78-168 (576)
489 PF03686 UPF0146: Uncharacteri 40.1 41 0.00088 27.0 3.6 85 31-134 3-91 (127)
490 PRK08776 cystathionine gamma-s 39.7 2E+02 0.0044 26.8 8.8 123 24-152 57-187 (405)
491 PRK08628 short chain dehydroge 39.7 1.1E+02 0.0024 25.5 6.6 78 42-123 7-92 (258)
492 PRK14722 flhF flagellar biosyn 39.6 40 0.00087 31.6 4.1 78 44-124 139-225 (374)
493 PRK08862 short chain dehydroge 39.6 1.1E+02 0.0024 25.7 6.5 77 42-122 5-91 (227)
494 PRK10037 cell division protein 39.5 72 0.0016 27.3 5.4 14 113-126 116-129 (250)
495 TIGR01968 minD_bact septum sit 39.1 1.1E+02 0.0024 25.7 6.4 17 114-130 111-127 (261)
496 PRK07326 short chain dehydroge 39.0 1.4E+02 0.003 24.4 7.0 76 42-122 6-90 (237)
497 PF08141 SspH: Small acid-solu 38.8 13 0.00029 25.7 0.6 19 197-215 21-39 (58)
498 PRK09186 flagellin modificatio 38.7 1.4E+02 0.0031 24.7 7.0 77 42-122 4-91 (256)
499 PF03141 Methyltransf_29: Puta 38.7 55 0.0012 32.0 4.9 105 32-148 356-469 (506)
500 PRK12827 short chain dehydroge 38.6 1.3E+02 0.0028 24.7 6.7 79 41-122 5-95 (249)
No 1
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=100.00 E-value=1.8e-56 Score=381.25 Aligned_cols=214 Identities=63% Similarity=1.072 Sum_probs=199.0
Q ss_pred CccccChhhhHHHHHHhhhccCCCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCc
Q 027826 1 MKLVWSPETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDER 80 (218)
Q Consensus 1 ~~~~~~~~~a~~ayl~~l~~~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~ 80 (218)
||+.||||+|++|||+||++|+...+|++++||+.|++.++||.|+|+.+..|.+.|+||||.|+.+|+|++||+++..+
T Consensus 1 mkl~WSpe~AtkAYl~Tvk~c~~~~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~ 80 (218)
T PF07279_consen 1 MKLVWSPENATKAYLDTVKMCKKFKEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQ 80 (218)
T ss_pred CcceeChhHHHHHHHHHHHHhhhcCCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChh
Confidence 99999999999999999999999999999999999999999999999998887777999999999999999999999988
Q ss_pred cHHHHHHHHhhCCCc--eEEEEcCCCch-hhcCCCCCccEEEEeCCccCcH-HHHHHhcCCCCCeEEEEeCCCCCCccch
Q 027826 81 SRSEYVHALGEAGFS--PQVITGEADDE-ELMDGLVDIDFLVVDSRRKDFA-RVLRLANLSSRGAVLVCKNAYSRNDSTF 156 (218)
Q Consensus 81 ~~~~~a~~~~~agl~--i~~i~GdA~~~-e~L~~l~~fDfVFIDa~K~~Y~-~~~~~~~L~~~GgvIV~DNvl~~G~~~~ 156 (218)
++.++.+.+..+|+. ++|+.|++ . ++++++..+||++|||..++|. ++|+.+++.|+|+|||++|++.++...+
T Consensus 81 ~~~~~~~~l~~~~~~~~vEfvvg~~--~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV~~Na~~r~~~~~ 158 (218)
T PF07279_consen 81 SLSEYKKALGEAGLSDVVEFVVGEA--PEEVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVVCYNAFSRSTNGF 158 (218)
T ss_pred hHHHHHHHHhhccccccceEEecCC--HHHHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceEEEEeccccCCcCCc
Confidence 888888899999987 89999996 5 5899999999999999999999 9999999988899999999998776677
Q ss_pred hhhhhhccCCCCCeEEEEeecCCcEEEEEEeecCCccCCCCCCCCceEeccccccccccccC
Q 027826 157 RWKNVLDGRSRRLVRSVYLPVGKGLDIAHVATSGAVSSSAKGGSRWIKHFDRQSGEEHVIRK 218 (218)
Q Consensus 157 ~~~~~~~~~~~~~~~s~~lPiGDGl~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (218)
.|...+++. +.++|++||||.||+|++++.+++..++++++||||+|||+||||||||||
T Consensus 159 ~w~~~~~~~--r~Vrsv~LPIG~GleVt~ig~~~~~~~~~~~~srWi~~vD~~sGEeHv~R~ 218 (218)
T PF07279_consen 159 SWRSVLRGR--RVVRSVFLPIGKGLEVTRIGASGGSNSSRRKKSRWIKHVDQCSGEEHVFRR 218 (218)
T ss_pred cHHHhcCCC--CceeEEEeccCCCeEEEEEeecCCCCCCCCCCccceEeeccCCCceeeecC
Confidence 888777553 789999999999999999999998877888999999999999999999997
No 2
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=100.00 E-value=1.3e-42 Score=296.28 Aligned_cols=159 Identities=22% Similarity=0.393 Sum_probs=137.2
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eE
Q 027826 21 CELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQ 97 (218)
Q Consensus 21 ~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~ 97 (218)
..+.++|++|+||.+|+++.+||+||||||++|| ||+|||.++++ +|+ |+|+|.++++.+.|+ ++.++|+. |+
T Consensus 25 ~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~Gy--Sal~la~~l~~-~g~-i~tiE~~~~~~~~A~~~~~~ag~~~~I~ 100 (205)
T PF01596_consen 25 PQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGY--SALWLAEALPE-DGK-ITTIEIDPERAEIARENFRKAGLDDRIE 100 (205)
T ss_dssp GGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSH--HHHHHHHTSTT-TSE-EEEEESSHHHHHHHHHHHHHTTGGGGEE
T ss_pred CCCccCHHHHHHHHHHHHhcCCceEEEecccccc--HHHHHHHhhcc-cce-EEEecCcHHHHHHHHHHHHhcCCCCcEE
Confidence 3568899999999999999999999999999999 99999999876 789 777889999888776 45799997 99
Q ss_pred EEEcCCCchhhcCCC------CCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc---c--------chh-h
Q 027826 98 VITGEADDEELMDGL------VDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRND---S--------TFR-W 158 (218)
Q Consensus 98 ~i~GdA~~~e~L~~l------~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~---~--------~~~-~ 158 (218)
+++||| .++|+++ .+||||||||+|.+|++||+.+ +++++||+||+||++|+|. + .++ |
T Consensus 101 ~~~gda--~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f 178 (205)
T PF01596_consen 101 VIEGDA--LEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREF 178 (205)
T ss_dssp EEES-H--HHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHH
T ss_pred EEEecc--HhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHH
Confidence 999999 9999876 2699999999999999999999 6666699999999999995 1 122 6
Q ss_pred hhhhccCCCCCeEEEEeecCCcEEEEEEe
Q 027826 159 KNVLDGRSRRLVRSVYLPVGKGLDIAHVA 187 (218)
Q Consensus 159 ~~~~~~~~~~~~~s~~lPiGDGl~v~r~~ 187 (218)
++.+.++ |+|++++||+||||+|+||+
T Consensus 179 ~~~i~~d--~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 179 NEYIAND--PRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp HHHHHH---TTEEEEEECSTTEEEEEEE-
T ss_pred HHHHHhC--CCeeEEEEEeCCeeEEEEEC
Confidence 7766665 89999999999999999984
No 3
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=100.00 E-value=8.4e-41 Score=287.55 Aligned_cols=171 Identities=21% Similarity=0.338 Sum_probs=145.2
Q ss_pred hhHHHHHHhhhcc-C----------------CCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcE
Q 027826 9 TASKAYIDTVKSC-E----------------LSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGR 71 (218)
Q Consensus 9 ~a~~ayl~~l~~~-~----------------~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~ 71 (218)
+.+.+|+.+.... . .++.|++|+||++|+++.+||+||||||+.|| |++|||.++++ +|+
T Consensus 10 ~~l~~y~~~~~~~~~~~~~~~~~e~a~~~~~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~Gy--Sal~mA~~l~~-~g~ 86 (219)
T COG4122 10 EDLYDYLEALIPGEPPALLAELEEFARENGVPIIDPETGALLRLLARLSGPKRILEIGTAIGY--SALWMALALPD-DGR 86 (219)
T ss_pred HHHHHHHHhhcccCCchHHHHHHHHhHhcCCCCCChhHHHHHHHHHHhcCCceEEEeecccCH--HHHHHHhhCCC-CCe
Confidence 3566777766654 1 15669999999999999999999999999999 99999999987 788
Q ss_pred EEEEEcCCccHHHHHH-HHhhCCCc--eEEEE-cCCCchhhcCC-C-CCccEEEEeCCccCcHHHHHHh-cCCCCCeEEE
Q 027826 72 HVCLVPDERSRSEYVH-ALGEAGFS--PQVIT-GEADDEELMDG-L-VDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 72 vitt~e~~~~~~~~a~-~~~~agl~--i~~i~-GdA~~~e~L~~-l-~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV 144 (218)
++|+|.++++...|+ +|+++|+. |+++. ||| +++|.. + ++||||||||+|.+|++||+.+ +|+++||+||
T Consensus 87 -l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda--l~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv 163 (219)
T COG4122 87 -LTTIERDEERAEIARENLAEAGVDDRIELLLGGDA--LDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIV 163 (219)
T ss_pred -EEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH--HHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEE
Confidence 677789999887765 66899999 88999 699 999997 3 4999999999999999999999 7777799999
Q ss_pred EeCCCCCCc---cc----------hh-hhhhhccCCCCCeEEEEeecCCcEEEEEEe
Q 027826 145 CKNAYSRND---ST----------FR-WKNVLDGRSRRLVRSVYLPVGKGLDIAHVA 187 (218)
Q Consensus 145 ~DNvl~~G~---~~----------~~-~~~~~~~~~~~~~~s~~lPiGDGl~v~r~~ 187 (218)
+|||+|+|. +. .+ |+..+.++ |+++++++|+|||++|++|.
T Consensus 164 ~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~t~~lP~gDGl~v~~k~ 218 (219)
T COG4122 164 ADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLED--PRYDTVLLPLGDGLLLSRKR 218 (219)
T ss_pred EeecccCCccCCccchhHHHHHHHHHHHHHHHhhC--cCceeEEEecCCceEEEeec
Confidence 999999995 21 12 55555554 89999999999999999985
No 4
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=2.2e-40 Score=289.82 Aligned_cols=156 Identities=17% Similarity=0.270 Sum_probs=137.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEEEE
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVIT 100 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~i~ 100 (218)
.++|++|+||.+|++..+|++||||||++|| ||+|||.++++ +|+ ++|+|.++++...|+ +|.++|+. |++++
T Consensus 62 ~~~~~~g~lL~~l~~~~~ak~iLEiGT~~Gy--Sal~la~al~~-~g~-v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~ 137 (247)
T PLN02589 62 TTSADEGQFLNMLLKLINAKNTMEIGVYTGY--SLLATALALPE-DGK-ILAMDINRENYELGLPVIQKAGVAHKIDFRE 137 (247)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEEeChhhH--HHHHHHhhCCC-CCE-EEEEeCCHHHHHHHHHHHHHCCCCCceEEEe
Confidence 5689999999999999999999999999999 99999999875 789 667788888877775 56799998 99999
Q ss_pred cCCCchhhcCCC-------CCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc---c------c--------
Q 027826 101 GEADDEELMDGL-------VDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRND---S------T-------- 155 (218)
Q Consensus 101 GdA~~~e~L~~l-------~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~---~------~-------- 155 (218)
|+| +++|++| ++||||||||+|.+|++||+++ +++++||+||+||++|+|. + .
T Consensus 138 G~a--~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ 215 (247)
T PLN02589 138 GPA--LPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDF 215 (247)
T ss_pred ccH--HHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHH
Confidence 999 9999986 3899999999999999999998 7777799999999999995 1 0
Q ss_pred h-hhhhhhccCCCCCeEEEEeecCCcEEEEEEe
Q 027826 156 F-RWKNVLDGRSRRLVRSVYLPVGKGLDIAHVA 187 (218)
Q Consensus 156 ~-~~~~~~~~~~~~~~~s~~lPiGDGl~v~r~~ 187 (218)
+ .|++.+.++ ++|+++++|+|||++|++|.
T Consensus 216 ir~fn~~v~~d--~~~~~~llPigDGl~l~~k~ 246 (247)
T PLN02589 216 VLELNKALAAD--PRIEICMLPVGDGITLCRRI 246 (247)
T ss_pred HHHHHHHHHhC--CCEEEEEEEeCCccEEEEEe
Confidence 1 155556654 89999999999999999986
No 5
>PLN02476 O-methyltransferase
Probab=100.00 E-value=3.6e-39 Score=286.27 Aligned_cols=157 Identities=21% Similarity=0.302 Sum_probs=138.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEEE
Q 027826 23 LSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVI 99 (218)
Q Consensus 23 ~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~i 99 (218)
++++|++|+||++|+++.+||+||||||++|| |+++||.++++ +|+ |+++|.++++.+.|+ +++++|++ |+++
T Consensus 100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGy--Sal~lA~al~~-~G~-V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li 175 (278)
T PLN02476 100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGY--SSLAVALVLPE-SGC-LVACERDSNSLEVAKRYYELAGVSHKVNVK 175 (278)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEecCCCCH--HHHHHHHhCCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 37899999999999999999999999999999 99999999875 788 777789898877765 56799998 9999
Q ss_pred EcCCCchhhcCCC------CCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc---c--------chh-hhh
Q 027826 100 TGEADDEELMDGL------VDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRND---S--------TFR-WKN 160 (218)
Q Consensus 100 ~GdA~~~e~L~~l------~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~---~--------~~~-~~~ 160 (218)
.||| .++|+++ ++||||||||+|.+|++||+++ +++++||+||+||++|+|. + .++ |++
T Consensus 176 ~GdA--~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~ 253 (278)
T PLN02476 176 HGLA--AESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNK 253 (278)
T ss_pred EcCH--HHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHH
Confidence 9999 9999876 3899999999999999999998 7777799999999999996 1 122 777
Q ss_pred hhccCCCCCeEEEEeecCCcEEEEEEe
Q 027826 161 VLDGRSRRLVRSVYLPVGKGLDIAHVA 187 (218)
Q Consensus 161 ~~~~~~~~~~~s~~lPiGDGl~v~r~~ 187 (218)
.+.++ ++|+++++|+|||++|++|+
T Consensus 254 ~v~~d--~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 254 KLMDD--KRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred HHhhC--CCEEEEEEEeCCeeEEEEEC
Confidence 66665 89999999999999999974
No 6
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.7e-36 Score=258.67 Aligned_cols=157 Identities=22% Similarity=0.277 Sum_probs=136.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEE
Q 027826 22 ELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQV 98 (218)
Q Consensus 22 ~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~ 98 (218)
.+.++|++|+|+.+|++..+||++||||+|+|| |++++|.++++ +|+ |+++|.|++.++... ..+.||+. |++
T Consensus 54 ~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGy--SaL~~Alalp~-dGr-v~a~eid~~~~~~~~~~~k~agv~~KI~~ 129 (237)
T KOG1663|consen 54 EMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGY--SALAVALALPE-DGR-VVAIEIDADAYEIGLELVKLAGVDHKITF 129 (237)
T ss_pred ceecChHHHHHHHHHHHHhCCceEEEEecccCH--HHHHHHHhcCC-Cce-EEEEecChHHHHHhHHHHHhccccceeee
Confidence 357999999999999999999999999999999 99999999987 899 666788887766664 45799998 999
Q ss_pred EEcCCCchhhcCCC----C--CccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc---cc---------h---
Q 027826 99 ITGEADDEELMDGL----V--DIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRND---ST---------F--- 156 (218)
Q Consensus 99 i~GdA~~~e~L~~l----~--~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~---~~---------~--- 156 (218)
++|+| ++.|++| + +|||+|+||||.+|..|++.+ +|+++||||++||++|+|. ++ +
T Consensus 130 i~g~a--~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~~r~~ 207 (237)
T KOG1663|consen 130 IEGPA--LESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRSIREA 207 (237)
T ss_pred eecch--hhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEeccccCCcccCcccCCCcchhhhhhh
Confidence 99999 9988875 2 899999999999999999998 8888899999999999993 11 1
Q ss_pred -hhhhhhccCCCCCeEEEEeecCCcEEEEEE
Q 027826 157 -RWKNVLDGRSRRLVRSVYLPVGKGLDIAHV 186 (218)
Q Consensus 157 -~~~~~~~~~~~~~~~s~~lPiGDGl~v~r~ 186 (218)
.+|..+..+ +++..+++|+|||+.++++
T Consensus 208 ~~~n~~l~~D--~rV~~s~~~igdG~~i~~k 236 (237)
T KOG1663|consen 208 LNLNKKLARD--PRVYISLLPIGDGITICRK 236 (237)
T ss_pred hhhhhHhccC--cceeeEeeeccCceeeecc
Confidence 144556655 8999999999999999886
No 7
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=1.1e-35 Score=257.59 Aligned_cols=157 Identities=17% Similarity=0.240 Sum_probs=136.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEEE
Q 027826 23 LSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVI 99 (218)
Q Consensus 23 ~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~i 99 (218)
+.++|++|+||++|+++.+|++||||||++|| |+++||.++++ +|+ ++++|.++++.+.++ ++.++|+. |+++
T Consensus 50 ~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~--s~l~la~~~~~-~g~-v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~ 125 (234)
T PLN02781 50 MEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGY--SLLTTALALPE-DGR-ITAIDIDKEAYEVGLEFIKKAGVDHKINFI 125 (234)
T ss_pred cccCHHHHHHHHHHHHHhCCCEEEEecCcccH--HHHHHHHhCCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 36799999999999999999999999999999 99999999865 678 777889998877665 55799997 9999
Q ss_pred EcCCCchhhcCCC------CCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc---c-------------ch
Q 027826 100 TGEADDEELMDGL------VDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRND---S-------------TF 156 (218)
Q Consensus 100 ~GdA~~~e~L~~l------~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~---~-------------~~ 156 (218)
.||| .+.|+++ ++|||||+|++|.+|++||+.+ +++++||+|++||++|+|. + .+
T Consensus 126 ~gda--~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~i 203 (234)
T PLN02781 126 QSDA--LSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKAL 203 (234)
T ss_pred EccH--HHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHH
Confidence 9999 9998875 3899999999999999999998 7777799999999999994 1 01
Q ss_pred -hhhhhhccCCCCCeEEEEeecCCcEEEEEEe
Q 027826 157 -RWKNVLDGRSRRLVRSVYLPVGKGLDIAHVA 187 (218)
Q Consensus 157 -~~~~~~~~~~~~~~~s~~lPiGDGl~v~r~~ 187 (218)
.|++.+.++ ++++++++|+|||+++++|.
T Consensus 204 r~~~~~i~~~--~~~~~~~lp~gdG~~i~~k~ 233 (234)
T PLN02781 204 LEFNKLLASD--PRVEISQISIGDGVTLCRRL 233 (234)
T ss_pred HHHHHHHhhC--CCeEEEEEEeCCccEEEEEe
Confidence 156656654 89999999999999999974
No 8
>PLN03075 nicotianamine synthase; Provisional
Probab=99.58 E-value=1.6e-14 Score=129.74 Aligned_cols=123 Identities=15% Similarity=0.136 Sum_probs=103.0
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcC-cchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh--hCCCc--eEEE
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSH-GGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG--EAGFS--PQVI 99 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~-~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~--~agl~--i~~i 99 (218)
..+.++++|+.+... +|++|+||||| .|| |++.|+.++.+ +++ ++.+|.++++.+.|+.+. +.|+. ++|+
T Consensus 108 L~~lE~~~L~~~~~~-~p~~VldIGcGpgpl--taiilaa~~~p-~~~-~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~ 182 (296)
T PLN03075 108 LSKLEFDLLSQHVNG-VPTKVAFVGSGPLPL--TSIVLAKHHLP-TTS-FHNFDIDPSANDVARRLVSSDPDLSKRMFFH 182 (296)
T ss_pred HHHHHHHHHHHhhcC-CCCEEEEECCCCcHH--HHHHHHHhcCC-CCE-EEEEeCCHHHHHHHHHHhhhccCccCCcEEE
Confidence 578899999999988 99999999999 778 99988877654 678 777789999888887654 48887 9999
Q ss_pred EcCCCchhhcCCCCCccEEEEeC----CccCcHHHHHHh-cCCCCCeEEEEeCCCCCCccch
Q 027826 100 TGEADDEELMDGLVDIDFLVVDS----RRKDFARVLRLA-NLSSRGAVLVCKNAYSRNDSTF 156 (218)
Q Consensus 100 ~GdA~~~e~L~~l~~fDfVFIDa----~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~~~~ 156 (218)
.||+ .+..+.+..||+||++| +|+.+.++|+.+ +.+++||+++.=. .+|...+
T Consensus 183 ~~Da--~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~--~~G~r~~ 240 (296)
T PLN03075 183 TADV--MDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS--AHGARAF 240 (296)
T ss_pred ECch--hhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec--ccchHhh
Confidence 9999 88765677999999998 799999999999 6566699999887 3665333
No 9
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.47 E-value=1e-14 Score=110.37 Aligned_cols=98 Identities=24% Similarity=0.358 Sum_probs=41.8
Q ss_pred EEeCcCcchHHHHHHHHHhcCCCC-cEEEEEEcCCccHHHHHHHHhhCCCc--eEEEEcCCCchhhcCCCC--CccEEEE
Q 027826 46 VETWSHGGATATSVGLAVASRHTG-GRHVCLVPDERSRSEYVHALGEAGFS--PQVITGEADDEELMDGLV--DIDFLVV 120 (218)
Q Consensus 46 LEiGt~~GyiGsaiglA~a~~~~~-G~vitt~e~~~~~~~~a~~~~~agl~--i~~i~GdA~~~e~L~~l~--~fDfVFI 120 (218)
|||||+.|+ |+++|++++++.+ ++ +++++..+.....++.+++.++. ++++.|+. .+.++++. +|||+||
T Consensus 1 lEiG~~~G~--st~~l~~~~~~~~~~~-~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s--~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGY--STLWLASALRDNGRGK-LYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDS--PDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp -----------------------------EEEESS------------GGG-BTEEEEES-T--HHHHHHHHH--EEEEEE
T ss_pred Ccccccccc--ccccccccccccccCC-EEEEECCCcccccchhhhhcCCCCeEEEEEcCc--HHHHHHcCCCCEEEEEE
Confidence 799999999 9999999988744 36 55556666422233444456665 99999999 99998875 9999999
Q ss_pred eCCc--cCcHHHHHHh-cCCCCCeEEEEeCC
Q 027826 121 DSRR--KDFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 121 Da~K--~~Y~~~~~~~-~L~~~GgvIV~DNv 148 (218)
|++. +.....|+.+ +.+++||+||+||+
T Consensus 76 Dg~H~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 76 DGDHSYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp ES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 9972 4444555555 44455999999985
No 10
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.39 E-value=6.3e-12 Score=107.19 Aligned_cols=115 Identities=15% Similarity=0.183 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
+..|....++..++......+|||||||+|| .+..||..+.. +|+ |+++|.++++.+.++ ++.+.|+. ++++.|
T Consensus 59 ~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~--~t~~la~~~~~-~~~-V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g 134 (212)
T PRK13942 59 ISAIHMVAIMCELLDLKEGMKVLEIGTGSGY--HAAVVAEIVGK-SGK-VVTIERIPELAEKAKKTLKKLGYDNVEVIVG 134 (212)
T ss_pred eCcHHHHHHHHHHcCCCCcCEEEEECCcccH--HHHHHHHhcCC-CCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 5678888888888888888999999999999 77778877643 578 777889998887765 45688887 999999
Q ss_pred CCCchhhcCCCCCccEEEEeCCccCcHHHHHHhcCCCCCeEEEEe
Q 027826 102 EADDEELMDGLVDIDFLVVDSRRKDFARVLRLANLSSRGAVLVCK 146 (218)
Q Consensus 102 dA~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~~L~~~GgvIV~D 146 (218)
|+ .+..+...+||.||+++...++++- +...+++||.+++.
T Consensus 135 d~--~~~~~~~~~fD~I~~~~~~~~~~~~--l~~~LkpgG~lvi~ 175 (212)
T PRK13942 135 DG--TLGYEENAPYDRIYVTAAGPDIPKP--LIEQLKDGGIMVIP 175 (212)
T ss_pred Cc--ccCCCcCCCcCEEEECCCcccchHH--HHHhhCCCcEEEEE
Confidence 99 7766555699999999998877652 23344559988774
No 11
>PRK04457 spermidine synthase; Provisional
Probab=99.32 E-value=2.1e-11 Score=107.50 Aligned_cols=108 Identities=13% Similarity=0.038 Sum_probs=83.3
Q ss_pred HHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCC-c-eEEEEcCCCchhh
Q 027826 32 LVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGF-S-PQVITGEADDEEL 108 (218)
Q Consensus 32 fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl-~-i~~i~GdA~~~e~ 108 (218)
++..|....++++|||||+|+|+ .+..++...+ +.+ ++.+|.+++..+.++.+. ..+. . +++++||+ .+.
T Consensus 57 m~~~l~~~~~~~~vL~IG~G~G~--l~~~l~~~~p--~~~-v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da--~~~ 129 (262)
T PRK04457 57 MMGFLLFNPRPQHILQIGLGGGS--LAKFIYTYLP--DTR-QTAVEINPQVIAVARNHFELPENGERFEVIEADG--AEY 129 (262)
T ss_pred HHHHHhcCCCCCEEEEECCCHhH--HHHHHHHhCC--CCe-EEEEECCHHHHHHHHHHcCCCCCCCceEEEECCH--HHH
Confidence 44444545689999999999999 7777777654 567 788899999888877553 3333 3 99999999 999
Q ss_pred cCCCC-CccEEEEeCCccC-------cHHHHHHh-cCCCCCeEEEEe
Q 027826 109 MDGLV-DIDFLVVDSRRKD-------FARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 109 L~~l~-~fDfVFIDa~K~~-------Y~~~~~~~-~L~~~GgvIV~D 146 (218)
+++.+ +||+||+|+.... ..++|+.+ ..+++||++++.
T Consensus 130 l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 130 IAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 98775 8999999996543 26888888 555569999884
No 12
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.31 E-value=2.9e-11 Score=102.81 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=88.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
+..|...+.+..++......+|||||||+|| .++.||..... +|+ |+.+|.++++.+.++ ++.+.|+. ++++.|
T Consensus 60 ~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~--~a~~la~~~~~-~g~-V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~ 135 (215)
T TIGR00080 60 ISAPHMVAMMTELLELKPGMKVLEIGTGSGY--QAAVLAEIVGR-DGL-VVSIERIPELAEKAERRLRKLGLDNVIVIVG 135 (215)
T ss_pred echHHHHHHHHHHhCCCCcCEEEEECCCccH--HHHHHHHHhCC-CCE-EEEEeCCHHHHHHHHHHHHHCCCCCeEEEEC
Confidence 3456665666666677788899999999999 77778887553 578 667788888877776 45688887 999999
Q ss_pred CCCchhhcCCCCCccEEEEeCCccCcHHHHHHhcCCCCCeEEEEe
Q 027826 102 EADDEELMDGLVDIDFLVVDSRRKDFARVLRLANLSSRGAVLVCK 146 (218)
Q Consensus 102 dA~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~~L~~~GgvIV~D 146 (218)
|+ .+.++...+||+|++|+....+++.+ ...+++||.+++.
T Consensus 136 d~--~~~~~~~~~fD~Ii~~~~~~~~~~~~--~~~L~~gG~lv~~ 176 (215)
T TIGR00080 136 DG--TQGWEPLAPYDRIYVTAAGPKIPEAL--IDQLKEGGILVMP 176 (215)
T ss_pred Cc--ccCCcccCCCCEEEEcCCcccccHHH--HHhcCcCcEEEEE
Confidence 99 87766666999999999877776542 3444559998875
No 13
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.27 E-value=7.5e-11 Score=99.89 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEEEEcC
Q 027826 26 ESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVITGE 102 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~i~Gd 102 (218)
.|..-..+..++......+|||||||+|| .+..||..+.. +|+ |+.+|.++++.+.++ ++.+.|+. ++++.||
T Consensus 57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~--~~~~la~~~~~-~g~-V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d 132 (205)
T PRK13944 57 APHMVAMMCELIEPRPGMKILEVGTGSGY--QAAVCAEAIER-RGK-VYTVEIVKELAIYAAQNIERLGYWGVVEVYHGD 132 (205)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECcCccH--HHHHHHHhcCC-CCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECC
Confidence 34333333333333444699999999999 77778887653 577 777889888877665 55678875 8999999
Q ss_pred CCchhhcCCCCCccEEEEeCCccCcHHHHHHhcCCCCCeEEEEeCC
Q 027826 103 ADDEELMDGLVDIDFLVVDSRRKDFARVLRLANLSSRGAVLVCKNA 148 (218)
Q Consensus 103 A~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~~L~~~GgvIV~DNv 148 (218)
+ .+.++...+||.||+++....+++ ++...+++||.+++...
T Consensus 133 ~--~~~~~~~~~fD~Ii~~~~~~~~~~--~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 133 G--KRGLEKHAPFDAIIVTAAASTIPS--ALVRQLKDGGVLVIPVE 174 (205)
T ss_pred c--ccCCccCCCccEEEEccCcchhhH--HHHHhcCcCcEEEEEEc
Confidence 9 877766569999999998776664 33344555999988754
No 14
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.26 E-value=9.3e-11 Score=99.15 Aligned_cols=145 Identities=16% Similarity=0.161 Sum_probs=100.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
+..|.....+..++...+..+|||||||+|| .+..|+... ++ ++++|.++++...++ ++.+.|+. ++++.|
T Consensus 61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~--~t~~la~~~----~~-v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~ 133 (212)
T PRK00312 61 ISQPYMVARMTELLELKPGDRVLEIGTGSGY--QAAVLAHLV----RR-VFSVERIKTLQWEAKRRLKQLGLHNVSVRHG 133 (212)
T ss_pred eCcHHHHHHHHHhcCCCCCCEEEEECCCccH--HHHHHHHHh----CE-EEEEeCCHHHHHHHHHHHHHCCCCceEEEEC
Confidence 4578888888888888888999999999999 666666652 46 667788888776665 55688887 999999
Q ss_pred CCCchhhcCCCCCccEEEEeCCccCcHHHHHHhcCCCCCeEEEEeCCCCCCccch-hhhh---hhccCCCCCeEEEEeec
Q 027826 102 EADDEELMDGLVDIDFLVVDSRRKDFARVLRLANLSSRGAVLVCKNAYSRNDSTF-RWKN---VLDGRSRRLVRSVYLPV 177 (218)
Q Consensus 102 dA~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~~L~~~GgvIV~DNvl~~G~~~~-~~~~---~~~~~~~~~~~s~~lPi 177 (218)
|+ .+.++...+||+|++++....+++.+ ..++++||.+++.=. ..+.... .+.+ ..... .-+.+.+.|+
T Consensus 134 d~--~~~~~~~~~fD~I~~~~~~~~~~~~l--~~~L~~gG~lv~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~ 206 (212)
T PRK00312 134 DG--WKGWPAYAPFDRILVTAAAPEIPRAL--LEQLKEGGILVAPVG-GEEQQLLTRVRKRGGRFERE--VLEEVRFVPL 206 (212)
T ss_pred Cc--ccCCCcCCCcCEEEEccCchhhhHHH--HHhcCCCcEEEEEEc-CCCceEEEEEEEcCCeEEEE--EEccEEEEec
Confidence 99 77776666999999999887776532 344555998887522 1111111 1211 01111 3467778899
Q ss_pred CCcEE
Q 027826 178 GKGLD 182 (218)
Q Consensus 178 GDGl~ 182 (218)
.+|++
T Consensus 207 ~~~~~ 211 (212)
T PRK00312 207 VKGEL 211 (212)
T ss_pred CCCCC
Confidence 88864
No 15
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=5e-11 Score=102.29 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
+..|..-..+..++......+||||||++|| .|--||+-. |+ |+++|..++..+.|+ ++...|+. |.+++|
T Consensus 55 is~P~~vA~m~~~L~~~~g~~VLEIGtGsGY--~aAvla~l~----~~-V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g 127 (209)
T COG2518 55 ISAPHMVARMLQLLELKPGDRVLEIGTGSGY--QAAVLARLV----GR-VVSIERIEELAEQARRNLETLGYENVTVRHG 127 (209)
T ss_pred ecCcHHHHHHHHHhCCCCCCeEEEECCCchH--HHHHHHHHh----Ce-EEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence 6778787888888889999999999999999 665677753 46 888899999887775 56799997 999999
Q ss_pred CCCchhhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 102 EADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 102 dA~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
|. ..-.+...+||-|++-|.-..-|+-| + +|.+ ||.+|+-=
T Consensus 128 DG--~~G~~~~aPyD~I~Vtaaa~~vP~~L--l~QL~~-gGrlv~Pv 169 (209)
T COG2518 128 DG--SKGWPEEAPYDRIIVTAAAPEVPEAL--LDQLKP-GGRLVIPV 169 (209)
T ss_pred Cc--ccCCCCCCCcCEEEEeeccCCCCHHH--HHhccc-CCEEEEEE
Confidence 99 88888878999999999977776532 3 4444 88887653
No 16
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.24 E-value=1.8e-10 Score=95.63 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc-eEEEEcC
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS-PQVITGE 102 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~-i~~i~Gd 102 (218)
..++..+++-..+...+..+|||||||+|+ .++.++...+ +++ ++.+|.++++.+.++. ..+.++. ++++.||
T Consensus 15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~--~~~~la~~~~--~~~-v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d 89 (187)
T PRK08287 15 TKEEVRALALSKLELHRAKHLIDVGAGTGS--VSIEAALQFP--SLQ-VTAIERNPDALRLIKENRQRFGCGNIDIIPGE 89 (187)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCcCCH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHHHHHhCCCCeEEEecC
Confidence 344455555555566688999999999999 7777777643 467 6677888887766654 4567776 9999999
Q ss_pred CCchhhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 103 ADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 103 A~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
+ ...++ ++||+||+++....+.++++.+ +++++||.+++..+..
T Consensus 90 ~--~~~~~--~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~ 134 (187)
T PRK08287 90 A--PIELP--GKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILL 134 (187)
T ss_pred c--hhhcC--cCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecH
Confidence 9 65443 3899999999888888999987 6666699999976543
No 17
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.21 E-value=1.4e-10 Score=96.91 Aligned_cols=101 Identities=18% Similarity=0.335 Sum_probs=78.4
Q ss_pred HHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCCCC
Q 027826 37 AAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGLVD 114 (218)
Q Consensus 37 ~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l~~ 114 (218)
+...+.++|||||||+|+ .++.+|...+ +++ ++.+|.++++.+.++.+ ++.|+. ++++.||+ .+. +.-++
T Consensus 38 ~~~~~~~~vLDiGcGtG~--~s~~la~~~~--~~~-V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~--~~~-~~~~~ 109 (181)
T TIGR00138 38 LEYLDGKKVIDIGSGAGF--PGIPLAIARP--ELK-LTLLESNHKKVAFLREVKAELGLNNVEIVNGRA--EDF-QHEEQ 109 (181)
T ss_pred HHhcCCCeEEEecCCCCc--cHHHHHHHCC--CCe-EEEEeCcHHHHHHHHHHHHHhCCCCeEEEecch--hhc-cccCC
Confidence 445678999999999999 7777775432 577 67778888877766544 577887 99999999 774 32348
Q ss_pred ccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEe
Q 027826 115 IDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 115 fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
||+|+.++ ..++.++++.+ +++++||.+++-
T Consensus 110 fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 110 FDVITSRA-LASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence 99999999 67888999987 666669998854
No 18
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.19 E-value=3.5e-10 Score=94.67 Aligned_cols=119 Identities=16% Similarity=0.187 Sum_probs=90.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc-eEEEE
Q 027826 23 LSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS-PQVIT 100 (218)
Q Consensus 23 ~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~-i~~i~ 100 (218)
.+..++..+++...+......+|||+|||+|+ .++.+|...+ +++ ++.+|.++++.+.++. ..+.++. ++++.
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~--~~~~la~~~~--~~~-V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~ 96 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGT--IPVEAGLLCP--KGR-VIAIERDEEVVNLIRRNCDRFGVKNVEVIE 96 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCH--HHHHHHHHCC--CCE-EEEEeCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 35567777777666676667899999999999 7777776533 467 6677888888777654 4577877 99999
Q ss_pred cCCCchhhcCCCC-CccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 101 GEADDEELMDGLV-DIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 101 GdA~~~e~L~~l~-~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
||+ .+.++.+. .+|.+|+|+. ....++++.+ +++++||.+++....
T Consensus 97 ~d~--~~~~~~~~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 97 GSA--PECLAQLAPAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred Cch--HHHHhhCCCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 999 88777664 6899999975 4567888887 556669998888654
No 19
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.19 E-value=5.2e-10 Score=85.01 Aligned_cols=101 Identities=14% Similarity=0.172 Sum_probs=78.1
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCC-CCc
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGL-VDI 115 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l-~~f 115 (218)
....++|||+|||+|+ .++-++...+ +++ ++.+|.++.+.+.++.+ ...++. ++++.+|+ .+.++.. ++|
T Consensus 17 ~~~~~~vldlG~G~G~--~~~~l~~~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 89 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGS--ITIEAARLVP--NGR-VYAIERNPEALRLIERNARRFGVSNIVIVEGDA--PEALEDSLPEP 89 (124)
T ss_pred CCCCCEEEEeCCCCCH--HHHHHHHHCC--Cce-EEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc--cccChhhcCCC
Confidence 3445799999999999 7777777654 367 66678888777766544 567776 99999999 7655544 489
Q ss_pred cEEEEeCCccCcHHHHHHh-cCCCCCeEEEEe
Q 027826 116 DFLVVDSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 116 DfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
|+|+++.....+.++++.+ +++++||.+++.
T Consensus 90 D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 90 DRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence 9999999888899999998 666669998864
No 20
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.17 E-value=5.8e-10 Score=94.03 Aligned_cols=97 Identities=20% Similarity=0.300 Sum_probs=76.3
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCCCCccEE
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGLVDIDFL 118 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l~~fDfV 118 (218)
..++|||||||+|+ .++.+|.+.+ +++ |+.+|.++++.+.++.. .+.++. ++++.+|+ .+.-. -++||+|
T Consensus 45 ~g~~VLDiGcGtG~--~al~la~~~~--~~~-V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~--~~~~~-~~~fDlV 116 (187)
T PRK00107 45 GGERVLDVGSGAGF--PGIPLAIARP--ELK-VTLVDSLGKKIAFLREVAAELGLKNVTVVHGRA--EEFGQ-EEKFDVV 116 (187)
T ss_pred CCCeEEEEcCCCCH--HHHHHHHHCC--CCe-EEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccH--hhCCC-CCCccEE
Confidence 36899999999999 7877777543 567 66678888887776654 578887 99999999 77433 3489999
Q ss_pred EEeCCccCcHHHHHHh-cCCCCCeEEEEe
Q 027826 119 VVDSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 119 FIDa~K~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
|.++. .++..+++.+ +++++||.+++-
T Consensus 117 ~~~~~-~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 117 TSRAV-ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred EEccc-cCHHHHHHHHHHhcCCCeEEEEE
Confidence 99984 6788999988 666668888765
No 21
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.16 E-value=5.3e-10 Score=93.91 Aligned_cols=121 Identities=12% Similarity=0.197 Sum_probs=89.6
Q ss_pred CCCHHHHHHHH-HHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCC-c-eEEE
Q 027826 24 SHESGVAELVS-AMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGF-S-PQVI 99 (218)
Q Consensus 24 ~i~p~~g~fL~-~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl-~-i~~i 99 (218)
.++++.-..+. .........+|||+|||+|+ -++.+|..+.+ +++ ++.+|.++++.+.++.+ ...|+ . ++++
T Consensus 22 ~~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~--~s~~~a~~~~~-~~~-v~avD~~~~~~~~a~~n~~~~g~~~~v~~~ 97 (198)
T PRK00377 22 PMTKEEIRALALSKLRLRKGDMILDIGCGTGS--VTVEASLLVGE-TGK-VYAVDKDEKAINLTRRNAEKFGVLNNIVLI 97 (198)
T ss_pred CCCHHHHHHHHHHHcCCCCcCEEEEeCCcCCH--HHHHHHHHhCC-CCE-EEEEECCHHHHHHHHHHHHHhCCCCCeEEE
Confidence 45544444333 22234455799999999999 66667766543 567 66778888887776644 57775 3 8999
Q ss_pred EcCCCchhhcCCCC-CccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 100 TGEADDEELMDGLV-DIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 100 ~GdA~~~e~L~~l~-~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
.||+ .+.++.+. .||.||+......+.++++.+ +++++||.++++....
T Consensus 98 ~~d~--~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 98 KGEA--PEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILL 148 (198)
T ss_pred Eech--hhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecH
Confidence 9999 88888774 899999988778899999998 6666699999987754
No 22
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.16 E-value=3.2e-10 Score=85.33 Aligned_cols=98 Identities=24% Similarity=0.209 Sum_probs=74.0
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCc--eEEEEcCCCchhhcCCCCCccEE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFS--PQVITGEADDEELMDGLVDIDFL 118 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~--i~~i~GdA~~~e~L~~l~~fDfV 118 (218)
-.+||||||++|. .++.+++..+ +.+ ++.+|.++++.+.++... +.+.. |+++++|+ .......++||+|
T Consensus 2 ~~~vLDlGcG~G~--~~~~l~~~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~--~~~~~~~~~~D~v 74 (112)
T PF12847_consen 2 GGRVLDLGCGTGR--LSIALARLFP--GAR-VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA--EFDPDFLEPFDLV 74 (112)
T ss_dssp TCEEEEETTTTSH--HHHHHHHHHT--TSE-EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC--HGGTTTSSCEEEE
T ss_pred CCEEEEEcCcCCH--HHHHHHhcCC--CCE-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc--ccCcccCCCCCEE
Confidence 4689999999999 8887887433 678 777789999888776553 55555 99999999 6666666699999
Q ss_pred EEeC-CccCcHH------HHHHh-cCCCCCeEEEEe
Q 027826 119 VVDS-RRKDFAR------VLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 119 FIDa-~K~~Y~~------~~~~~-~L~~~GgvIV~D 146 (218)
+++. .-..|.. +++.+ ++++|||+++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 75 ICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp EECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 9999 4444544 47777 555559999875
No 23
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.15 E-value=1.5e-10 Score=99.37 Aligned_cols=118 Identities=17% Similarity=0.141 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
+..|..-..+..++....-.+|||||||+|| .|--||....+ .|+ |+++|.+++..+.|+ ++.+.|+. |++++|
T Consensus 55 is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY--~aAlla~lvg~-~g~-Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~g 130 (209)
T PF01135_consen 55 ISAPSMVARMLEALDLKPGDRVLEIGTGSGY--QAALLAHLVGP-VGR-VVSVERDPELAERARRNLARLGIDNVEVVVG 130 (209)
T ss_dssp E--HHHHHHHHHHTTC-TT-EEEEES-TTSH--HHHHHHHHHST-TEE-EEEEESBHHHHHHHHHHHHHHTTHSEEEEES
T ss_pred chHHHHHHHHHHHHhcCCCCEEEEecCCCcH--HHHHHHHhcCc-cce-EEEECccHHHHHHHHHHHHHhccCceeEEEc
Confidence 4557655555555667788899999999999 66556766554 577 667899998877665 56788997 999999
Q ss_pred CCCchhhcCCCCCccEEEEeCCccCcHHHHHHhcCCCCCeEEEEeCCC
Q 027826 102 EADDEELMDGLVDIDFLVVDSRRKDFARVLRLANLSSRGAVLVCKNAY 149 (218)
Q Consensus 102 dA~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~~L~~~GgvIV~DNvl 149 (218)
|+ .+-++...+||.|++.+.-..-+.- ++..+++||.+|+---.
T Consensus 131 dg--~~g~~~~apfD~I~v~~a~~~ip~~--l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 131 DG--SEGWPEEAPFDRIIVTAAVPEIPEA--LLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp -G--GGTTGGG-SEEEEEESSBBSS--HH--HHHTEEEEEEEEEEESS
T ss_pred ch--hhccccCCCcCEEEEeeccchHHHH--HHHhcCCCcEEEEEEcc
Confidence 99 8877766699999999987665532 34223459999986544
No 24
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=8.4e-10 Score=97.04 Aligned_cols=134 Identities=20% Similarity=0.162 Sum_probs=106.6
Q ss_pred hhhHHHHHHhhhccCCCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH
Q 027826 8 ETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH 87 (218)
Q Consensus 8 ~~a~~ayl~~l~~~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~ 87 (218)
++....|+..++-...+|-|--+.++-+.+.+..-.+|||.|||+|. -+..||.+..+ .|+ |++.|..++.++.|+
T Consensus 61 ~p~~~d~~~~~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~--lt~~La~~vg~-~G~-v~tyE~r~d~~k~A~ 136 (256)
T COG2519 61 KPTPEDYLLSMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGA--LTAYLARAVGP-EGH-VTTYEIREDFAKTAR 136 (256)
T ss_pred CCCHHHHHHhCcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchH--HHHHHHHhhCC-Cce-EEEEEecHHHHHHHH
Confidence 45566778776666668888888888899999999999999999998 56567877765 589 777888888888775
Q ss_pred -HHhhCCCc--eEEEEcCCCchhhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 88 -ALGEAGFS--PQVITGEADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 88 -~~~~agl~--i~~i~GdA~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
++.++|+. |++..||. .+.+... .||.||+|-- +=-++++.+ .++++||.+++-+-..
T Consensus 137 ~Nl~~~~l~d~v~~~~~Dv--~~~~~~~-~vDav~LDmp--~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 137 ENLSEFGLGDRVTLKLGDV--REGIDEE-DVDAVFLDLP--DPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred HHHHHhccccceEEEeccc--ccccccc-ccCEEEEcCC--ChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 55688998 89999999 8866655 9999999985 556788888 6666699998876543
No 25
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.09 E-value=2.8e-10 Score=96.26 Aligned_cols=126 Identities=13% Similarity=0.100 Sum_probs=94.9
Q ss_pred HHHHHHhhhccCC-----CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHH
Q 027826 11 SKAYIDTVKSCEL-----SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY 85 (218)
Q Consensus 11 ~~ayl~~l~~~~~-----~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~ 85 (218)
+.-|++.++.... +++|.++.+++++.. ...+|||||||+|+ .++.||...+ +++ ++.+|.++++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~VLDiGcGtG~--~~~~la~~~p--~~~-v~gVD~s~~~i~~ 79 (202)
T PRK00121 7 RRGRLTKGQQRAIEELWPRLSPAPLDWAELFGN--DAPIHLEIGFGKGE--FLVEMAKANP--DIN-FIGIEVHEPGVGK 79 (202)
T ss_pred hccccccchhhhhcccchhhcCCCCCHHHHcCC--CCCeEEEEccCCCH--HHHHHHHHCC--Ccc-EEEEEechHHHHH
Confidence 4567777776554 688999999999999 78899999999999 7777877643 456 6667888888776
Q ss_pred HHH-HhhCCCc-eEEEEcCCCchhhcCC-CC--CccEEEEeC---Cc--------cCcHHHHHHh-cCCCCCeEEEE
Q 027826 86 VHA-LGEAGFS-PQVITGEADDEELMDG-LV--DIDFLVVDS---RR--------KDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 86 a~~-~~~agl~-i~~i~GdA~~~e~L~~-l~--~fDfVFIDa---~K--------~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
++. ....++. ++++.+|+ .+.++. +. +||.|++.. +. ..+..+++.+ +++++||++++
T Consensus 80 a~~~~~~~~~~~v~~~~~d~--~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 80 ALKKIEEEGLTNLRLLCGDA--VEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred HHHHHHHcCCCCEEEEecCH--HHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 654 4567776 99999999 877763 42 799999842 21 1368889888 66666888765
No 26
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.05 E-value=4.2e-09 Score=88.97 Aligned_cols=116 Identities=17% Similarity=0.243 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEcCCCch
Q 027826 29 VAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITGEADDE 106 (218)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~GdA~~~ 106 (218)
.-.+.-.-.+..+-.++++|||++|- -+|=+|.+. +.|+ ++.+|.++++.+.-+ +..+.|++ ++++.|+| -
T Consensus 22 IRal~ls~L~~~~g~~l~DIGaGtGs--i~iE~a~~~--p~~~-v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p 94 (187)
T COG2242 22 IRALTLSKLRPRPGDRLWDIGAGTGS--ITIEWALAG--PSGR-VIAIERDEEALELIERNAARFGVDNLEVVEGDA--P 94 (187)
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCccH--HHHHHHHhC--CCce-EEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc--h
Confidence 33333344556677899999999998 566566433 3689 667788888877655 44689988 99999999 9
Q ss_pred hhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 107 ELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 107 e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
+.|++++.||-|||=+. .++...++.+ ..+++||-||++=+....
T Consensus 95 ~~L~~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 95 EALPDLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred HhhcCCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 99999989999999999 9999999999 444559999998776543
No 27
>PRK01581 speE spermidine synthase; Validated
Probab=99.05 E-value=8.6e-10 Score=101.84 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=76.4
Q ss_pred HHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH------hhCCCc---eEEEEcCCCch
Q 027826 36 MAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL------GEAGFS---PQVITGEADDE 106 (218)
Q Consensus 36 L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~------~~agl~---i~~i~GdA~~~ 106 (218)
++...+|++||+||+|+|+ ++-.+.+. .+..+ |+.+|.++++.+.|+.+ .+..+. ++++.+|| .
T Consensus 145 m~~h~~PkrVLIIGgGdG~--tlrelLk~--~~v~~-It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da--~ 217 (374)
T PRK01581 145 MSKVIDPKRVLILGGGDGL--ALREVLKY--ETVLH-VDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDA--K 217 (374)
T ss_pred HHhCCCCCEEEEECCCHHH--HHHHHHhc--CCCCe-EEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcH--H
Confidence 4557899999999999998 55333331 22346 88889999988887752 122332 99999999 9
Q ss_pred hhcCCCC-CccEEEEeCCcc-------Cc-HHHHHHh-cCCCCCeEEEEeC
Q 027826 107 ELMDGLV-DIDFLVVDSRRK-------DF-ARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 107 e~L~~l~-~fDfVFIDa~K~-------~Y-~~~~~~~-~L~~~GgvIV~DN 147 (218)
+.|+..+ .||+||+|.... .| .++|+.+ +.+++||++|+-.
T Consensus 218 ~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 218 EFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred HHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9998775 899999996432 44 6688888 5555599987753
No 28
>PLN02366 spermidine synthase
Probab=98.97 E-value=4.6e-09 Score=94.97 Aligned_cols=112 Identities=11% Similarity=0.119 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHH-----hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hh--CCCc---
Q 027826 27 SGVAELVSAMAA-----GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GE--AGFS--- 95 (218)
Q Consensus 27 p~~g~fL~~L~~-----~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~--agl~--- 95 (218)
++...+-.+|+. ..+|++||.||+|.|. ++-.+++. ++..+ |+.+|.+++..+.++.+ .. .+++
T Consensus 72 ~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~--~~rellk~--~~v~~-V~~VEiD~~Vi~~ar~~f~~~~~~~~dpR 146 (308)
T PLN02366 72 RDECAYQEMITHLPLCSIPNPKKVLVVGGGDGG--VLREIARH--SSVEQ-IDICEIDKMVIDVSKKFFPDLAVGFDDPR 146 (308)
T ss_pred ccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccH--HHHHHHhC--CCCCe-EEEEECCHHHHHHHHHhhhhhccccCCCc
Confidence 444444445443 3689999999999998 66666653 22345 77889999887777654 33 2343
Q ss_pred eEEEEcCCCchhhcCCC-C-CccEEEEeCCccC-------cHHHHHHh-cCCCCCeEEEE
Q 027826 96 PQVITGEADDEELMDGL-V-DIDFLVVDSRRKD-------FARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 96 i~~i~GdA~~~e~L~~l-~-~fDfVFIDa~K~~-------Y~~~~~~~-~L~~~GgvIV~ 145 (218)
++++.||| .+.+.+. + +||+||+|+.... +.++|+.+ +.+++||+++.
T Consensus 147 v~vi~~Da--~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 147 VNLHIGDG--VEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred eEEEEChH--HHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 99999999 9999877 3 8999999987642 45678888 55556999865
No 29
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.97 E-value=2.4e-08 Score=93.89 Aligned_cols=121 Identities=12% Similarity=0.202 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
.+..+..+++..++...+.++|||+||++|. .++.+|..+.+ +|+ |+.+|.++++...++ ++.+.|+. |+++++
T Consensus 233 ~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~--~t~~la~~~~~-~~~-v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~ 308 (444)
T PRK14902 233 TIQDESSMLVAPALDPKGGDTVLDACAAPGG--KTTHIAELLKN-TGK-VVALDIHEHKLKLIEENAKRLGLTNIETKAL 308 (444)
T ss_pred EEEChHHHHHHHHhCCCCCCEEEEeCCCCCH--HHHHHHHHhCC-CCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 4556677888877777777899999999999 78788887643 577 667788888776655 55688988 999999
Q ss_pred CCCchhhcCCCC-CccEEEEeCCccC-------------------------cHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 102 EADDEELMDGLV-DIDFLVVDSRRKD-------------------------FARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 102 dA~~~e~L~~l~-~fDfVFIDa~K~~-------------------------Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
|+ .+.++.+. +||+||+|+.-.. ..++++.+ +++++||.+|.-..-+
T Consensus 309 D~--~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 309 DA--RKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred Cc--ccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 99 77665554 8999999985221 12355555 6666799998766543
No 30
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.93 E-value=1.2e-08 Score=92.82 Aligned_cols=112 Identities=12% Similarity=0.097 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc-eEEEEcCC
Q 027826 26 ESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS-PQVITGEA 103 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~-i~~i~GdA 103 (218)
.|..-..+...+...+..+|||||||+|| .++.+|..... .|+ |+.+|.++++.+.++. +.+.|+. ++++.||+
T Consensus 65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~--~a~~LA~~~~~-~g~-VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~ 140 (322)
T PRK13943 65 QPSLMALFMEWVGLDKGMRVLEIGGGTGY--NAAVMSRVVGE-KGL-VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDG 140 (322)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEEeCCccH--HHHHHHHhcCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCh
Confidence 44433333333334556799999999999 77778876543 467 6667888888776654 5678887 99999999
Q ss_pred CchhhcCCCCCccEEEEeCCccCcHHHHHHhcCCCCCeEEEE
Q 027826 104 DDEELMDGLVDIDFLVVDSRRKDFARVLRLANLSSRGAVLVC 145 (218)
Q Consensus 104 ~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~~L~~~GgvIV~ 145 (218)
.+.++...+||.|++++...+-++. +.+.+++||.+++
T Consensus 141 --~~~~~~~~~fD~Ii~~~g~~~ip~~--~~~~LkpgG~Lvv 178 (322)
T PRK13943 141 --YYGVPEFAPYDVIFVTVGVDEVPET--WFTQLKEGGRVIV 178 (322)
T ss_pred --hhcccccCCccEEEECCchHHhHHH--HHHhcCCCCEEEE
Confidence 8877776789999999876554432 2334444777665
No 31
>PRK00811 spermidine synthase; Provisional
Probab=98.92 E-value=7.5e-09 Score=92.17 Aligned_cols=101 Identities=14% Similarity=0.176 Sum_probs=73.2
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hh--CCC----ceEEEEcCCCchhhcCC
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GE--AGF----SPQVITGEADDEELMDG 111 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~--agl----~i~~i~GdA~~~e~L~~ 111 (218)
..+|++||+||+|.|+ ++..+++. ....+ |+.+|.+++..+.++.+ .. .+. .++++.||| .+.++.
T Consensus 74 ~~~p~~VL~iG~G~G~--~~~~~l~~--~~~~~-V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da--~~~l~~ 146 (283)
T PRK00811 74 HPNPKRVLIIGGGDGG--TLREVLKH--PSVEK-ITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDG--IKFVAE 146 (283)
T ss_pred CCCCCEEEEEecCchH--HHHHHHcC--CCCCE-EEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECch--HHHHhh
Confidence 3589999999999998 66555432 22346 88889999988877654 32 233 289999999 999887
Q ss_pred CC-CccEEEEeCCcc------Cc-HHHHHHh-cCCCCCeEEEEe
Q 027826 112 LV-DIDFLVVDSRRK------DF-ARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 112 l~-~fDfVFIDa~K~------~Y-~~~~~~~-~L~~~GgvIV~D 146 (218)
.+ +||+|++|+... .| .++|+.+ +.+++||++++-
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 54 899999997422 23 4567777 555669999873
No 32
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.92 E-value=4e-09 Score=98.35 Aligned_cols=102 Identities=14% Similarity=0.219 Sum_probs=75.3
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc---eEEEEcCCCchhhcCCC-
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS---PQVITGEADDEELMDGL- 112 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~---i~~i~GdA~~~e~L~~l- 112 (218)
+..+.++|||+||++|+ .++ +.+... ..+ |+.+|.++...+.++.+ ...|+. ++++.||+ .+.|+++
T Consensus 217 ~~~~g~rVLDlfsgtG~--~~l--~aa~~g-a~~-V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~--~~~l~~~~ 288 (396)
T PRK15128 217 RYVENKRVLNCFSYTGG--FAV--SALMGG-CSQ-VVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDV--FKLLRTYR 288 (396)
T ss_pred HhcCCCeEEEeccCCCH--HHH--HHHhCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccH--HHHHHHHH
Confidence 55678999999999998 444 333322 235 77789999887777654 567773 89999999 9988764
Q ss_pred ---CCccEEEEeCCc------------cCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 113 ---VDIDFLVVDSRR------------KDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 113 ---~~fDfVFIDa~K------------~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
.+||+||+|... ..|.++++.+ +++++||++++=+
T Consensus 289 ~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 289 DRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred hcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 289999999542 3588888887 6666699887543
No 33
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.90 E-value=2.9e-08 Score=87.32 Aligned_cols=128 Identities=16% Similarity=0.099 Sum_probs=86.8
Q ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHh
Q 027826 12 KAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALG 90 (218)
Q Consensus 12 ~ayl~~l~~~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~ 90 (218)
+.|...+.-...|+=|--..++-+.+.+..=.+|||.|||+|. -++.||+++.+ .|+ |+|.|..+++++.|+ ++.
T Consensus 11 e~~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~--lt~~l~r~v~p-~G~-v~t~E~~~~~~~~A~~n~~ 86 (247)
T PF08704_consen 11 ELWTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGS--LTHALARAVGP-TGH-VYTYEFREDRAEKARKNFE 86 (247)
T ss_dssp HHHHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSH--HHHHHHHHHTT-TSE-EEEEESSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHH--HHHHHHHHhCC-CeE-EEccccCHHHHHHHHHHHH
Confidence 4566666555557878888888888899999999999999999 88889998876 689 777888888887765 667
Q ss_pred hCCCc--eEEEEcCCCchh-hcC-CCC-CccEEEEeCCc-cCcHHHHHHhcCCCCCeEEEEe
Q 027826 91 EAGFS--PQVITGEADDEE-LMD-GLV-DIDFLVVDSRR-KDFARVLRLANLSSRGAVLVCK 146 (218)
Q Consensus 91 ~agl~--i~~i~GdA~~~e-~L~-~l~-~fDfVFIDa~K-~~Y~~~~~~~~L~~~GgvIV~D 146 (218)
+.|+. |++.++|. .+ -.+ .++ .+|-||+|--. -++.+....+. .++||.|++=
T Consensus 87 ~~gl~~~v~~~~~Dv--~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L-~~~gG~i~~f 145 (247)
T PF08704_consen 87 RHGLDDNVTVHHRDV--CEEGFDEELESDFDAVFLDLPDPWEAIPHAKRAL-KKPGGRICCF 145 (247)
T ss_dssp HTTCCTTEEEEES-G--GCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE--EEEEEEEEE
T ss_pred HcCCCCCceeEecce--ecccccccccCcccEEEEeCCCHHHHHHHHHHHH-hcCCceEEEE
Confidence 89997 99999998 64 232 343 89999999763 34555544443 3569998764
No 34
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.89 E-value=1.3e-08 Score=81.61 Aligned_cols=103 Identities=19% Similarity=0.268 Sum_probs=76.2
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCC--CCc
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGL--VDI 115 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l--~~f 115 (218)
.+-.+||++|||+|+ .++.|+....+ +++ ++-++.++++.+.++.. .+.++. ++++++|+ .+ +++. .+|
T Consensus 2 ~~~~~iLDlGcG~G~--~~~~l~~~~~~-~~~-i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~--~~-l~~~~~~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGR--LLIQLAKELNP-GAK-IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDI--ED-LPQELEEKF 74 (152)
T ss_dssp TTTSEEEEET-TTSH--HHHHHHHHSTT-TSE-EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBT--TC-GCGCSSTTE
T ss_pred CCCCEEEEecCcCcH--HHHHHHHhcCC-CCE-EEEEECcHHHHHHhhcccccccccccceEEeeh--hc-cccccCCCe
Confidence 356899999999999 78888864443 678 77778999998887765 588998 99999999 88 7653 699
Q ss_pred cEEEEeCCcc---CcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 116 DFLVVDSRRK---DFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 116 DfVFIDa~K~---~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
|+|+....-. +-...++.+ +++++||++++-...
T Consensus 75 D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999997532 223456665 555557877765554
No 35
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.85 E-value=3.9e-08 Score=83.75 Aligned_cols=107 Identities=13% Similarity=0.149 Sum_probs=76.9
Q ss_pred HHHHHHHHhcCCCeEEEeCcCcchHHHHHH-HHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEcCCCchh
Q 027826 31 ELVSAMAAGWDARLIVETWSHGGATATSVG-LAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITGEADDEE 107 (218)
Q Consensus 31 ~fL~~L~~~~~ak~ILEiGt~~GyiGsaig-lA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~GdA~~~e 107 (218)
.++..|......++|||+|||+|+ .++. ++.. ..+ |+.+|.+++....++ ++...|+. ++++.+|+ .+
T Consensus 43 ~l~~~l~~~~~~~~vLDl~~GsG~--l~l~~lsr~----a~~-V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~--~~ 113 (199)
T PRK10909 43 TLFNWLAPVIVDARCLDCFAGSGA--LGLEALSRY----AAG-ATLLEMDRAVAQQLIKNLATLKAGNARVVNTNA--LS 113 (199)
T ss_pred HHHHHHhhhcCCCEEEEcCCCccH--HHHHHHHcC----CCE-EEEEECCHHHHHHHHHHHHHhCCCcEEEEEchH--HH
Confidence 356666665667899999999999 4442 2221 245 777889888776665 44677877 99999999 88
Q ss_pred hcCCCC-CccEEEEeCC--ccCcHHHHHHh---cCCCCCeEEEEe
Q 027826 108 LMDGLV-DIDFLVVDSR--RKDFARVLRLA---NLSSRGAVLVCK 146 (218)
Q Consensus 108 ~L~~l~-~fDfVFIDa~--K~~Y~~~~~~~---~L~~~GgvIV~D 146 (218)
.++... +||+||+|-. +..+.+.++.+ .++.++++|++-
T Consensus 114 ~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 114 FLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred HHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 886544 7999999988 45566677776 234448888765
No 36
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.84 E-value=1.5e-08 Score=100.61 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=82.4
Q ss_pred HHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc---eEEEEcCCCchhhc
Q 027826 34 SAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS---PQVITGEADDEELM 109 (218)
Q Consensus 34 ~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~---i~~i~GdA~~~e~L 109 (218)
..+.+..+.++|||+||++|. .++.+|.+ +++.|+.+|.++...+.++.+ ...|+. ++++.+|+ .+.|
T Consensus 531 ~~~~~~~~g~rVLDlf~gtG~--~sl~aa~~----Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~--~~~l 602 (702)
T PRK11783 531 RMIGQMAKGKDFLNLFAYTGT--ASVHAALG----GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADC--LAWL 602 (702)
T ss_pred HHHHHhcCCCeEEEcCCCCCH--HHHHHHHC----CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccH--HHHH
Confidence 445666778999999999999 67666653 333377889999887777654 566774 89999999 9988
Q ss_pred CCCC-CccEEEEeCCc--------------cCcHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 110 DGLV-DIDFLVVDSRR--------------KDFARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 110 ~~l~-~fDfVFIDa~K--------------~~Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
++++ +||+|++|... ..|.++++.+ +++++||++++.+-..
T Consensus 603 ~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 603 KEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred HHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 7665 89999999642 2477777776 6666699998876543
No 37
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.83 E-value=3.4e-08 Score=81.40 Aligned_cols=83 Identities=10% Similarity=0.016 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcCCCch
Q 027826 28 GVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEADDE 106 (218)
Q Consensus 28 ~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~GdA~~~ 106 (218)
+.+.+|...+...+.++|||+|||+|+ .++.++.. +.+ ++.+|.++++.+.++.+ ...++.++++.+|+ .
T Consensus 6 ~d~~~l~~~l~~~~~~~vLdlG~G~G~--~~~~l~~~----~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~--~ 76 (179)
T TIGR00537 6 EDSLLLEANLRELKPDDVLEIGAGTGL--VAIRLKGK----GKC-ILTTDINPFAVKELRENAKLNNVGLDVVMTDL--F 76 (179)
T ss_pred ccHHHHHHHHHhcCCCeEEEeCCChhH--HHHHHHhc----CCE-EEEEECCHHHHHHHHHHHHHcCCceEEEEccc--c
Confidence 344677777778888999999999999 56555542 235 66778999887776654 56666789999999 7
Q ss_pred hhcCCCCCccEEEEe
Q 027826 107 ELMDGLVDIDFLVVD 121 (218)
Q Consensus 107 e~L~~l~~fDfVFID 121 (218)
+.++ ++||+|+.+
T Consensus 77 ~~~~--~~fD~Vi~n 89 (179)
T TIGR00537 77 KGVR--GKFDVILFN 89 (179)
T ss_pred cccC--CcccEEEEC
Confidence 6543 389999987
No 38
>PLN02823 spermine synthase
Probab=98.83 E-value=2.5e-08 Score=91.22 Aligned_cols=101 Identities=11% Similarity=0.125 Sum_probs=72.8
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh---hCCCc---eEEEEcCCCchhhcCC
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG---EAGFS---PQVITGEADDEELMDG 111 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~---~agl~---i~~i~GdA~~~e~L~~ 111 (218)
..-+|++||.||+|.|+ ++-.+.+. + ...+ |+.+|.+++..+.++.+. ..++. ++++.+|| .+.|+.
T Consensus 100 ~~~~pk~VLiiGgG~G~--~~re~l~~-~-~~~~-v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da--~~~L~~ 172 (336)
T PLN02823 100 HHPNPKTVFIMGGGEGS--TAREVLRH-K-TVEK-VVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDA--RAELEK 172 (336)
T ss_pred hCCCCCEEEEECCCchH--HHHHHHhC-C-CCCe-EEEEECCHHHHHHHHHhcccccccccCCceEEEEChh--HHHHhh
Confidence 33479999999999998 55444432 1 1245 788899999888887553 22232 99999999 999987
Q ss_pred CC-CccEEEEeCCcc--------C-cHHHHH-Hh-cCCCCCeEEEE
Q 027826 112 LV-DIDFLVVDSRRK--------D-FARVLR-LA-NLSSRGAVLVC 145 (218)
Q Consensus 112 l~-~fDfVFIDa~K~--------~-Y~~~~~-~~-~L~~~GgvIV~ 145 (218)
.+ +||+||+|+... . ..++|+ .+ +.+++||++++
T Consensus 173 ~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 173 RDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred CCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence 65 899999996432 2 346787 67 55555999887
No 39
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.82 E-value=4.5e-08 Score=83.21 Aligned_cols=102 Identities=20% Similarity=0.217 Sum_probs=72.9
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc-eEEEEcCCCchhhcCCCCCc
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS-PQVITGEADDEELMDGLVDI 115 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~-i~~i~GdA~~~e~L~~l~~f 115 (218)
.....++|||+|||+|. .+.-|+....+ +++ ++.+|.++++...++. ..+.++. ++++.+|+ .+....-++|
T Consensus 42 ~~~~~~~vLDiGcG~G~--~~~~la~~~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~~~~f 115 (231)
T TIGR02752 42 NVQAGTSALDVCCGTAD--WSIALAEAVGP-EGH-VIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA--MELPFDDNSF 115 (231)
T ss_pred CCCCCCEEEEeCCCcCH--HHHHHHHHhCC-CCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEEech--hcCCCCCCCc
Confidence 44456799999999999 77778877644 567 6667888887776654 4566776 99999999 6632122389
Q ss_pred cEEEEeCC---ccCcHHHHHHh-cCCCCCeEEEE
Q 027826 116 DFLVVDSR---RKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 116 DfVFIDa~---K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
|+|++... -.++...++.+ +++++||.+++
T Consensus 116 D~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 116 DYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred cEEEEecccccCCCHHHHHHHHHHHcCcCeEEEE
Confidence 99998753 34556666666 66666998765
No 40
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.82 E-value=1.4e-07 Score=88.62 Aligned_cols=155 Identities=16% Similarity=0.201 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEcC
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITGE 102 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~Gd 102 (218)
+.....+++..++....-.+|||+||+.|. -++.||..+.. .|+ |+.+|.++++...++ ++.+.|+. |+++.+|
T Consensus 236 ~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~--kt~~la~~~~~-~g~-v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D 311 (434)
T PRK14901 236 VQDRSAQLVAPLLDPQPGEVILDACAAPGG--KTTHIAELMGD-QGE-IWAVDRSASRLKKLQENAQRLGLKSIKILAAD 311 (434)
T ss_pred EECHHHHHHHHHhCCCCcCEEEEeCCCCch--hHHHHHHHhCC-Cce-EEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 344556666666666666899999999999 77778887653 578 666788888776655 55689998 9999999
Q ss_pred CCchhhcCC---C-CCccEEEEeCCccC-------------------------cHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 103 ADDEELMDG---L-VDIDFLVVDSRRKD-------------------------FARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 103 A~~~e~L~~---l-~~fDfVFIDa~K~~-------------------------Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
+ .+.... . ++||.||+|+.-.. -.+.++.+ +++++||.+|.-......
T Consensus 312 ~--~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 312 S--RNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred h--hhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 9 765432 2 37999999985211 13445555 666679988766544433
Q ss_pred ccch-hhhhhhccCCCCCeEEE-----Eeec---CCcEEEEEEe
Q 027826 153 DSTF-RWKNVLDGRSRRLVRSV-----YLPV---GKGLDIAHVA 187 (218)
Q Consensus 153 ~~~~-~~~~~~~~~~~~~~~s~-----~lPi---GDGl~v~r~~ 187 (218)
.+.. .....+++. |+|+.. ++|- .||.-+++..
T Consensus 390 ~Ene~~v~~~l~~~--~~~~~~~~~~~~~P~~~~~dGfF~a~l~ 431 (434)
T PRK14901 390 AENEAQIEQFLARH--PDWKLEPPKQKIWPHRQDGDGFFMAVLR 431 (434)
T ss_pred hhHHHHHHHHHHhC--CCcEecCCCCccCCCCCCCCcEEEEEEE
Confidence 2111 111122221 444422 4453 4888888765
No 41
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.75 E-value=8.4e-08 Score=83.45 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEcCCC
Q 027826 28 GVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGEAD 104 (218)
Q Consensus 28 ~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~GdA~ 104 (218)
+..++|..+. .++.+|||||||+|+ .++.||.. +.+ |+.+|.++++.+.++.. .+.|+. ++++++|+
T Consensus 33 ~~~~~l~~l~--~~~~~vLDiGcG~G~--~a~~la~~----g~~-v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~- 102 (255)
T PRK11036 33 DLDRLLAELP--PRPLRVLDAGGGEGQ--TAIKLAEL----GHQ-VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAA- 102 (255)
T ss_pred HHHHHHHhcC--CCCCEEEEeCCCchH--HHHHHHHc----CCE-EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCH-
Confidence 3444555543 467899999999999 77777753 456 66678888887777654 577875 89999999
Q ss_pred chhhcCCCC-CccEEEEeCCc---cCcHHHHHHh-cCCCCCeEEEE
Q 027826 105 DEELMDGLV-DIDFLVVDSRR---KDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 105 ~~e~L~~l~-~fDfVFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
.+..+..+ +||+|+...-- .+-..+++.+ ++++|||.+++
T Consensus 103 -~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 103 -QDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred -HHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 77544344 89999987542 2334667777 67777999865
No 42
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.74 E-value=1e-07 Score=89.65 Aligned_cols=123 Identities=16% Similarity=0.239 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
.+..+.++++..++......+|||+||++|. -|+.+|..+.. +|+ |+.+|.++++...++ ++.+.|+. ++++.+
T Consensus 220 ~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGg--kt~~la~~~~~-~g~-V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~ 295 (431)
T PRK14903 220 TVQGESSQIVPLLMELEPGLRVLDTCAAPGG--KTTAIAELMKD-QGK-ILAVDISREKIQLVEKHAKRLKLSSIEIKIA 295 (431)
T ss_pred EEECHHHHHHHHHhCCCCCCEEEEeCCCccH--HHHHHHHHcCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 4556677888878877788899999999999 77778887654 578 666788888876665 55689998 899999
Q ss_pred CCCchhhcCCCC-CccEEEEeCCccC-------------------------cHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 102 EADDEELMDGLV-DIDFLVVDSRRKD-------------------------FARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~~l~-~fDfVFIDa~K~~-------------------------Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
|+ .+..+.++ +||.||+|+.-.. +.+.++.+ +++++||.+|..-....-
T Consensus 296 Da--~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 296 DA--ERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred ch--hhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 99 66432333 8999999975421 13345454 666669998877665443
No 43
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.74 E-value=1.2e-07 Score=89.37 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=83.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
.+......+...++....-++|||+||++|+ .++.+|..+.. +|+ |+.+|.++++.+.++ ++.+.|+. |+++.+
T Consensus 233 ~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~--kt~~la~~~~~-~~~-V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~ 308 (445)
T PRK14904 233 SVQNPTQALACLLLNPQPGSTVLDLCAAPGG--KSTFMAELMQN-RGQ-ITAVDRYPQKLEKIRSHASALGITIIETIEG 308 (445)
T ss_pred EEeCHHHHHHHHhcCCCCCCEEEEECCCCCH--HHHHHHHHhCC-CcE-EEEEECCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 3444455555555555555799999999999 78778887654 567 677788888877665 45688998 999999
Q ss_pred CCCchhhcCCCCCccEEEEeCCcc-------------------------CcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 102 EADDEELMDGLVDIDFLVVDSRRK-------------------------DFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 102 dA~~~e~L~~l~~fDfVFIDa~K~-------------------------~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
|+ .+..+. .+||.||+|+--. ...+.++.+ .++++||.+|..-..
T Consensus 309 Da--~~~~~~-~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 309 DA--RSFSPE-EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred cc--cccccC-CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 99 765432 3799999996321 112345555 566679999886643
No 44
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.71 E-value=1.4e-07 Score=84.09 Aligned_cols=116 Identities=19% Similarity=0.155 Sum_probs=81.0
Q ss_pred CCCHHHHHHHHHHHH-h---cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--e
Q 027826 24 SHESGVAELVSAMAA-G---WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--P 96 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~-~---~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i 96 (218)
+..|++..++...+. . .++++|||+|||+|+ .++.+|...+ +.+ ++.+|.+++..+.++.+ ...|+. |
T Consensus 100 ipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~--i~~~la~~~~--~~~-v~avDis~~al~~A~~n~~~~~~~~~i 174 (284)
T TIGR03533 100 IPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGC--IAIACAYAFP--EAE-VDAVDISPDALAVAEINIERHGLEDRV 174 (284)
T ss_pred cCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHHHHHcCCCCcE
Confidence 345777787777654 2 346899999999999 6666776543 467 66678888887777654 577875 9
Q ss_pred EEEEcCCCchhhcCCCCCccEEEEeCCc----------------------------cCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 97 QVITGEADDEELMDGLVDIDFLVVDSRR----------------------------KDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 97 ~~i~GdA~~~e~L~~l~~fDfVFIDa~K----------------------------~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
+++.||+ .+.++. .+||+|+.|-.- +.|...++.+ +++++||.++++-
T Consensus 175 ~~~~~D~--~~~~~~-~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 175 TLIQSDL--FAALPG-RKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred EEEECch--hhccCC-CCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999999 776542 279999987210 1244555555 5666699998763
No 45
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.71 E-value=9.8e-08 Score=84.21 Aligned_cols=101 Identities=11% Similarity=0.136 Sum_probs=72.1
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhC-C-C--c-eEEEEcCCCchhhcCCC
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEA-G-F--S-PQVITGEADDEELMDGL 112 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~a-g-l--~-i~~i~GdA~~~e~L~~l 112 (218)
..+|++|||||+|+|. ++..++... ...+ ++.+|.+++..+.++.+ ... + + . ++++.+|+ .+.+++.
T Consensus 70 ~~~p~~VL~iG~G~G~--~~~~ll~~~--~~~~-v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~--~~~l~~~ 142 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGG--VLREVLKHK--SVEK-ATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDG--FKFLADT 142 (270)
T ss_pred CCCCCEEEEEcCCchH--HHHHHHhCC--Ccce-EEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECch--HHHHHhC
Confidence 3578999999999998 554444422 1345 77788999887766544 322 2 2 2 88999999 9998876
Q ss_pred C-CccEEEEeCCccC-------cHHHHHHh-cCCCCCeEEEEe
Q 027826 113 V-DIDFLVVDSRRKD-------FARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 113 ~-~fDfVFIDa~K~~-------Y~~~~~~~-~L~~~GgvIV~D 146 (218)
+ +||+|++|+.... ..++++.+ +++++||++++.
T Consensus 143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 5 9999999986221 35677777 555569999886
No 46
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.69 E-value=1.8e-07 Score=87.63 Aligned_cols=122 Identities=16% Similarity=0.234 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCceEEEEcCC
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQVITGEA 103 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~i~~i~GdA 103 (218)
+....+++...++......+|||+||++|. .++.++.... +++ |+.+|.++.+...++. +.+.|+.++++.+|+
T Consensus 228 iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~--~t~~la~~~~--~~~-v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~ 302 (427)
T PRK10901 228 VQDAAAQLAATLLAPQNGERVLDACAAPGG--KTAHILELAP--QAQ-VVALDIDAQRLERVRENLQRLGLKATVIVGDA 302 (427)
T ss_pred EECHHHHHHHHHcCCCCCCEEEEeCCCCCh--HHHHHHHHcC--CCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCc
Confidence 455566677767777777899999999999 7777777653 367 6677888888776654 468888889999999
Q ss_pred CchhhcCCC--CCccEEEEeCCccC-------------------------cHHHHHHh-cCCCCCeEEEEe-CCCCCCc
Q 027826 104 DDEELMDGL--VDIDFLVVDSRRKD-------------------------FARVLRLA-NLSSRGAVLVCK-NAYSRND 153 (218)
Q Consensus 104 ~~~e~L~~l--~~fDfVFIDa~K~~-------------------------Y~~~~~~~-~L~~~GgvIV~D-Nvl~~G~ 153 (218)
.+..+.+ .+||.||+|+.-.. +.+.++.+ .++++||.+|.= -.++...
T Consensus 303 --~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~E 379 (427)
T PRK10901 303 --RDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEE 379 (427)
T ss_pred --ccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhh
Confidence 7643323 37999999985321 23455555 556668887744 3455443
No 47
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.65 E-value=3.6e-07 Score=80.49 Aligned_cols=117 Identities=11% Similarity=0.152 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEcCC
Q 027826 26 ESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITGEA 103 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~GdA 103 (218)
.....++...++......+||++||+.|. -++.||..+.. .|+ |+.+|.++.+.+.++ ++.+.|+. |+++.+|+
T Consensus 56 qd~~s~~~~~~l~~~~g~~VLDl~ag~G~--kt~~la~~~~~-~g~-v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~ 131 (264)
T TIGR00446 56 QEASSMIPPLALEPDPPERVLDMAAAPGG--KTTQISALMKN-EGA-IVANEFSKSRTKVLIANINRCGVLNVAVTNFDG 131 (264)
T ss_pred ECHHHHHHHHHhCCCCcCEEEEECCCchH--HHHHHHHHcCC-CCE-EEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH
Confidence 33444554445555555789999999999 77778877654 467 667788888876655 55788987 99999999
Q ss_pred CchhhcCCCCCccEEEEeCCccC-------------------------cHHHHHHh-cCCCCCeEEEEeCC
Q 027826 104 DDEELMDGLVDIDFLVVDSRRKD-------------------------FARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 104 ~~~e~L~~l~~fDfVFIDa~K~~-------------------------Y~~~~~~~-~L~~~GgvIV~DNv 148 (218)
.........||.||+|+.-.. ..+.++.+ +++++||.+|.---
T Consensus 132 --~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 132 --RVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred --HHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 664333347999999974221 22355554 66677999886543
No 48
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.64 E-value=2.2e-07 Score=78.02 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=72.2
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEcCCCchhhcCCC-C--C
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITGEADDEELMDGL-V--D 114 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~GdA~~~e~L~~l-~--~ 114 (218)
.+..+|||||||+|. .++.||...+ ++. ++.+|.++++...++ ...+.|+. ++++.||+ .+.++.+ + .
T Consensus 15 ~~~~~ilDiGcG~G~--~~~~la~~~p--~~~-v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~--~~~~~~~~~~~~ 87 (194)
T TIGR00091 15 NKAPLHLEIGCGKGR--FLIDMAKQNP--DKN-FLGIEIHTPIVLAANNKANKLGLKNLHVLCGDA--NELLDKFFPDGS 87 (194)
T ss_pred CCCceEEEeCCCccH--HHHHHHHhCC--CCC-EEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCH--HHHHHhhCCCCc
Confidence 467799999999999 7777887654 466 666788887766654 45677887 99999999 8876543 2 7
Q ss_pred ccEEEEeC---C-c-------cCcHHHHHHh-cCCCCCeEEE
Q 027826 115 IDFLVVDS---R-R-------KDFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 115 fDfVFIDa---~-K-------~~Y~~~~~~~-~L~~~GgvIV 144 (218)
+|.||++- + | -.+.++++.+ +++++||.+.
T Consensus 88 ~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~ 129 (194)
T TIGR00091 88 LSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIH 129 (194)
T ss_pred eeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEE
Confidence 99999974 2 1 1246788887 6666688875
No 49
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.63 E-value=4.1e-07 Score=79.59 Aligned_cols=109 Identities=19% Similarity=0.169 Sum_probs=77.8
Q ss_pred HHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCC-C
Q 027826 37 AAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGL-V 113 (218)
Q Consensus 37 ~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l-~ 113 (218)
+.....++|||||||+|. .++-++..... .++ |+.++.++++.+.++.+ ...|+. ++++.||+ .+ ++-- .
T Consensus 73 ~~~~~g~~VLDiG~G~G~--~~~~~a~~~g~-~~~-v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~--~~-l~~~~~ 145 (272)
T PRK11873 73 AELKPGETVLDLGSGGGF--DCFLAARRVGP-TGK-VIGVDMTPEMLAKARANARKAGYTNVEFRLGEI--EA-LPVADN 145 (272)
T ss_pred ccCCCCCEEEEeCCCCCH--HHHHHHHHhCC-CCE-EEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch--hh-CCCCCC
Confidence 345567899999999998 66555655443 567 66678888877776654 577887 99999998 55 3322 3
Q ss_pred CccEEEEeCC---ccCcHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 114 DIDFLVVDSR---RKDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 114 ~fDfVFIDa~---K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
+||+|+..+. ..+....|+.+ +++++||.+++-++...+
T Consensus 146 ~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~ 188 (272)
T PRK11873 146 SVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG 188 (272)
T ss_pred ceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 8999998864 23456788887 777779999887665443
No 50
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.60 E-value=6.6e-07 Score=78.44 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=86.0
Q ss_pred HHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEcCCCchhhcCCCC
Q 027826 36 MAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITGEADDEELMDGLV 113 (218)
Q Consensus 36 L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~GdA~~~e~L~~l~ 113 (218)
+.......+||+||||||- .|+.+++... .|+ |+-++.++.+...++ ...+.|.. |++++||| .+ || ++
T Consensus 46 ~~~~~~g~~vLDva~GTGd--~a~~~~k~~g--~g~-v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA--e~-LP-f~ 116 (238)
T COG2226 46 LLGIKPGDKVLDVACGTGD--MALLLAKSVG--TGE-VVGLDISESMLEVAREKLKKKGVQNVEFVVGDA--EN-LP-FP 116 (238)
T ss_pred hhCCCCCCEEEEecCCccH--HHHHHHHhcC--Cce-EEEEECCHHHHHHHHHHhhccCccceEEEEech--hh-CC-CC
Confidence 3333367899999999999 8888999876 588 666788888877664 56677777 99999999 44 66 53
Q ss_pred --CccEEEEeCC---ccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc
Q 027826 114 --DIDFLVVDSR---RKDFARVLRLA-NLSSRGAVLVCKNAYSRND 153 (218)
Q Consensus 114 --~fDfVFIDa~---K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~ 153 (218)
+||+|.+.-- -.+++..++.+ ++++|||.+++-....+..
T Consensus 117 D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 117 DNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred CCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 9999999854 35777788887 8888899999988887653
No 51
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.60 E-value=5.3e-07 Score=74.16 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc-eEEEEcCCCchhh
Q 027826 31 ELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS-PQVITGEADDEEL 108 (218)
Q Consensus 31 ~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~-i~~i~GdA~~~e~ 108 (218)
++|...+.....++|||+|||+|+ -++.+|...+ ..+ |+.+|.++...+.++. +...+++ ++++.+|. .+.
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~--i~~~la~~~~--~~~-v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~--~~~ 93 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGV--ISLALAKRGP--DAK-VTAVDINPDALELAKRNAERNGLENVEVVQSDL--FEA 93 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSH--HHHHHHHTST--CEE-EEEEESBHHHHHHHHHHHHHTTCTTEEEEESST--TTT
T ss_pred HHHHHHHhhccCCeEEEecCChHH--HHHHHHHhCC--CCE-EEEEcCCHHHHHHHHHHHHhcCccccccccccc--ccc
Confidence 355555555589999999999999 4555666433 456 6667888887777754 5688888 99999999 776
Q ss_pred cCCCCCccEEEEeCC----cc----CcHHHHHHh-cCCCCCeEE
Q 027826 109 MDGLVDIDFLVVDSR----RK----DFARVLRLA-NLSSRGAVL 143 (218)
Q Consensus 109 L~~l~~fDfVFIDa~----K~----~Y~~~~~~~-~L~~~GgvI 143 (218)
++ -.+||+|+..-. .. ...++++.+ +.+++||.+
T Consensus 94 ~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l 136 (170)
T PF05175_consen 94 LP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRL 136 (170)
T ss_dssp CC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred cc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEE
Confidence 66 349999999742 11 245556666 444448866
No 52
>PRK03612 spermidine synthase; Provisional
Probab=98.60 E-value=3.3e-07 Score=88.16 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=72.6
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH---hh---CCC--c-eEEEEcCCCchhhc
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL---GE---AGF--S-PQVITGEADDEELM 109 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~---~~---agl--~-i~~i~GdA~~~e~L 109 (218)
..+|++||+||+|+|. ++..+++. +...+ ++.+|.+++..+.++.+ .+ ..+ . ++++.+|+ .+.+
T Consensus 295 ~~~~~rVL~IG~G~G~--~~~~ll~~--~~v~~-v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da--~~~l 367 (521)
T PRK03612 295 SARPRRVLVLGGGDGL--ALREVLKY--PDVEQ-VTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDA--FNWL 367 (521)
T ss_pred CCCCCeEEEEcCCccH--HHHHHHhC--CCcCe-EEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChH--HHHH
Confidence 3589999999999998 66544431 21246 78889999988877652 11 122 2 89999999 9988
Q ss_pred CCCC-CccEEEEeCCcc-------C-cHHHHHHh-cCCCCCeEEEEe
Q 027826 110 DGLV-DIDFLVVDSRRK-------D-FARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 110 ~~l~-~fDfVFIDa~K~-------~-Y~~~~~~~-~L~~~GgvIV~D 146 (218)
+..+ +||+|++|.... . ..++++.+ +.+++||++++.
T Consensus 368 ~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 368 RKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred HhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 8765 999999997422 2 23578787 556669999875
No 53
>PRK04266 fibrillarin; Provisional
Probab=98.59 E-value=4.5e-07 Score=78.59 Aligned_cols=113 Identities=12% Similarity=0.044 Sum_probs=73.0
Q ss_pred HHHHHHHHHH--HHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCC
Q 027826 27 SGVAELVSAM--AAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEAD 104 (218)
Q Consensus 27 p~~g~fL~~L--~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~ 104 (218)
...+.+|.-+ +....-.+|||+|||+|+ .++.||.... .|+ |+.+|.++++.+......+.--.|.++.||+
T Consensus 56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~--~~~~la~~v~--~g~-V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~- 129 (226)
T PRK04266 56 KLAAAILKGLKNFPIKKGSKVLYLGAASGT--TVSHVSDIVE--EGV-VYAVEFAPRPMRELLEVAEERKNIIPILADA- 129 (226)
T ss_pred chHHHHHhhHhhCCCCCCCEEEEEccCCCH--HHHHHHHhcC--CCe-EEEEECCHHHHHHHHHHhhhcCCcEEEECCC-
Confidence 3344555544 444566799999999999 7888888764 578 6667888876553332221111278899999
Q ss_pred chhhc--CCC-CCccEEEEeCCc-cCcHHHHHHh-cCCCCCeEEEEe
Q 027826 105 DEELM--DGL-VDIDFLVVDSRR-KDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 105 ~~e~L--~~l-~~fDfVFIDa~K-~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
.+.. ..+ ++||+||.|... .++...++.+ +++++||.+++-
T Consensus 130 -~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 130 -RKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred -CCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 5421 123 379999998753 2334456666 566668888773
No 54
>PLN02244 tocopherol O-methyltransferase
Probab=98.58 E-value=1.1e-06 Score=80.10 Aligned_cols=109 Identities=16% Similarity=0.090 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhc--------CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eE
Q 027826 29 VAELVSAMAAGW--------DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQ 97 (218)
Q Consensus 29 ~g~fL~~L~~~~--------~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~ 97 (218)
+.+++..+++.. ..++|||||||+|. .++.|+... +.+ |+.++.++.+.+.++.. .+.|+. ++
T Consensus 98 q~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~--~~~~La~~~---g~~-v~gvD~s~~~i~~a~~~~~~~g~~~~v~ 171 (340)
T PLN02244 98 QIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGG--SSRYLARKY---GAN-VKGITLSPVQAARANALAAAQGLSDKVS 171 (340)
T ss_pred HHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCH--HHHHHHHhc---CCE-EEEEECCHHHHHHHHHHHHhcCCCCceE
Confidence 344555555433 45799999999999 777777653 457 66778888877766654 467774 99
Q ss_pred EEEcCCCchhhcCC-CCCccEEEEeCCcc---CcHHHHHHh-cCCCCCeEEEEe
Q 027826 98 VITGEADDEELMDG-LVDIDFLVVDSRRK---DFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 98 ~i~GdA~~~e~L~~-l~~fDfVFIDa~K~---~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
++.+|+ .+. +- -++||+|+.-..-. +-..+++.+ +++++||.+++-
T Consensus 172 ~~~~D~--~~~-~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 172 FQVADA--LNQ-PFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred EEEcCc--ccC-CCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 999999 663 32 23899999743322 345677776 666668887763
No 55
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.57 E-value=2.6e-07 Score=70.03 Aligned_cols=95 Identities=23% Similarity=0.291 Sum_probs=69.4
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEcCCCchhhcCCC--CCccE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGEADDEELMDGL--VDIDF 117 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~GdA~~~e~L~~l--~~fDf 117 (218)
.+|||+|||+|. ..+.++... ..+ ++.+|.++...+.++.+ ...++. ++++.+|+ .+..+.+ .+||+
T Consensus 2 ~~vlD~~~G~G~--~~~~~~~~~---~~~-~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~--~~~~~~~~~~~~D~ 73 (117)
T PF13659_consen 2 DRVLDPGCGSGT--FLLAALRRG---AAR-VTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDA--RDLPEPLPDGKFDL 73 (117)
T ss_dssp EEEEEETSTTCH--HHHHHHHHC---TCE-EEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHH--HHHHHTCTTT-EEE
T ss_pred CEEEEcCcchHH--HHHHHHHHC---CCe-EEEEEECHHHHHHHHHHHHHccCCceEEEEECch--hhchhhccCceeEE
Confidence 479999999999 666666553 246 77789999887777655 578875 99999999 9988555 39999
Q ss_pred EEEeCCcc-----------CcHHHHHHh-cCCCCCeEEEE
Q 027826 118 LVVDSRRK-----------DFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 118 VFIDa~K~-----------~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
|+.|-.-. .|..+++.+ +++++||++++
T Consensus 74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 99985533 246677777 66666888764
No 56
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.57 E-value=6.4e-07 Score=80.86 Aligned_cols=114 Identities=19% Similarity=0.177 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHHH-hc---CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eE
Q 027826 25 HESGVAELVSAMAA-GW---DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQ 97 (218)
Q Consensus 25 i~p~~g~fL~~L~~-~~---~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~ 97 (218)
..|++..++...+. .. ++++|||+|||+|+ .++.+|...+ +.+ ++.+|.++.....++.+ ...|+. |+
T Consensus 113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~--iai~la~~~p--~~~-V~avDis~~al~~A~~n~~~~~l~~~i~ 187 (307)
T PRK11805 113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGC--IAIACAYAFP--DAE-VDAVDISPDALAVAEINIERHGLEDRVT 187 (307)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEechhhH--HHHHHHHHCC--CCE-EEEEeCCHHHHHHHHHHHHHhCCCCcEE
Confidence 45677777776543 21 23789999999999 6666776543 467 66678888887777655 577875 99
Q ss_pred EEEcCCCchhhcCCCCCccEEEEeCC----------------------------ccCcHHHHHHh-cCCCCCeEEEEe
Q 027826 98 VITGEADDEELMDGLVDIDFLVVDSR----------------------------RKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 98 ~i~GdA~~~e~L~~l~~fDfVFIDa~----------------------------K~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
++++|+ .+.++. .+||+|+.+-. -+.|...++.+ +.+++||.+++.
T Consensus 188 ~~~~D~--~~~l~~-~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 188 LIESDL--FAALPG-RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred EEECch--hhhCCC-CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999999 776652 37999998721 01245556666 556669999875
No 57
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.56 E-value=1.4e-06 Score=75.42 Aligned_cols=97 Identities=12% Similarity=0.131 Sum_probs=70.0
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchhhcCCCCCcc
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEELMDGLVDID 116 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e~L~~l~~fD 116 (218)
...+.++|||||||+|. .+..|+...+ +++ ++.++.++.+...++.. +. ++++.+|+ .+..+. .+||
T Consensus 28 ~~~~~~~vLDiGcG~G~--~~~~la~~~~--~~~-v~gvD~s~~~i~~a~~~----~~~~~~~~~d~--~~~~~~-~~fD 95 (258)
T PRK01683 28 PLENPRYVVDLGCGPGN--STELLVERWP--AAR-ITGIDSSPAMLAEARSR----LPDCQFVEADI--ASWQPP-QALD 95 (258)
T ss_pred CCcCCCEEEEEcccCCH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHh----CCCCeEEECch--hccCCC-CCcc
Confidence 44567899999999999 7777887653 467 66667888776665532 23 78999999 654332 3899
Q ss_pred EEEEeCCc---cCcHHHHHHh-cCCCCCeEEEEe
Q 027826 117 FLVVDSRR---KDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 117 fVFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
+||....- .+...+++.+ +++++||.+++-
T Consensus 96 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 96 LIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99988653 3566777777 666669988873
No 58
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.54 E-value=5.4e-07 Score=75.72 Aligned_cols=97 Identities=12% Similarity=0.079 Sum_probs=67.6
Q ss_pred HHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcCCCchhhcCCC-C
Q 027826 36 MAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEADDEELMDGL-V 113 (218)
Q Consensus 36 L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~GdA~~~e~L~~l-~ 113 (218)
.+....+.+|||+|||+|+ .++.||.. +.+ |+.++.++.+.+.++.. .+.|+.+++..+|. .+. .+ +
T Consensus 25 ~~~~~~~~~vLDiGcG~G~--~a~~la~~----g~~-V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~--~~~--~~~~ 93 (195)
T TIGR00477 25 AVKTVAPCKTLDLGCGQGR--NSLYLSLA----GYD-VRAWDHNPASIASVLDMKARENLPLRTDAYDI--NAA--ALNE 93 (195)
T ss_pred HhccCCCCcEEEeCCCCCH--HHHHHHHC----CCe-EEEEECCHHHHHHHHHHHHHhCCCceeEeccc--hhc--cccC
Confidence 3455678999999999999 77777752 457 66678888877666544 46777777777777 431 12 3
Q ss_pred CccEEEEe-----CCccCcHHHHHHh-cCCCCCeEE
Q 027826 114 DIDFLVVD-----SRRKDFARVLRLA-NLSSRGAVL 143 (218)
Q Consensus 114 ~fDfVFID-----a~K~~Y~~~~~~~-~L~~~GgvI 143 (218)
+||+||.- .+.+....+++.+ +++++||.+
T Consensus 94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 129 (195)
T TIGR00477 94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYN 129 (195)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEE
Confidence 79999643 2334567788887 666669973
No 59
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.54 E-value=7.7e-07 Score=74.94 Aligned_cols=109 Identities=15% Similarity=0.225 Sum_probs=77.0
Q ss_pred HHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc--eEEEEcCCCchh
Q 027826 31 ELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS--PQVITGEADDEE 107 (218)
Q Consensus 31 ~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~--i~~i~GdA~~~e 107 (218)
.|..+|.....-+++|+++||+|. +|+..+.+ +...++.+|.++.....++. +...++. ++++.+|+ .+
T Consensus 39 a~f~~l~~~~~g~~vLDLfaGsG~----lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~--~~ 110 (189)
T TIGR00095 39 LFFNILRPEIQGAHLLDVFAGSGL----LGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSA--LR 110 (189)
T ss_pred HHHHHHHHhcCCCEEEEecCCCcH----HHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhH--HH
Confidence 344444444567899999999998 33333323 33337778998887766654 4567775 89999999 98
Q ss_pred hcCCC---C-CccEEEEeCC--ccCcHHHHHHh---cCCCCCeEEEEeC
Q 027826 108 LMDGL---V-DIDFLVVDSR--RKDFARVLRLA---NLSSRGAVLVCKN 147 (218)
Q Consensus 108 ~L~~l---~-~fDfVFIDa~--K~~Y~~~~~~~---~L~~~GgvIV~DN 147 (218)
.|+.+ . .||+||+|-. +..|.+.++.+ .+++++|+||+-.
T Consensus 111 ~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 111 ALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred HHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 88754 2 4899999974 45677778776 5667799998753
No 60
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.54 E-value=1.5e-06 Score=74.23 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHhc--CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEE
Q 027826 25 HESGVAELVSAMAAGW--DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVIT 100 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~--~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~ 100 (218)
..|++..++..+.... ++++|||+|||+|+ .++.++...+ +.+ ++.+|.++.+...++.+ ...++. ++++.
T Consensus 69 p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~--~~~~l~~~~~--~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~ 143 (251)
T TIGR03534 69 PRPDTEELVEAALERLKKGPLRVLDLGTGSGA--IALALAKERP--DAR-VTAVDISPEALAVARKNAARLGLDNVTFLQ 143 (251)
T ss_pred CCCChHHHHHHHHHhcccCCCeEEEEeCcHhH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEE
Confidence 3456667777776655 34599999999999 6666776543 356 66678888887776654 577887 99999
Q ss_pred cCCCchhhcCCCCCccEEEEe
Q 027826 101 GEADDEELMDGLVDIDFLVVD 121 (218)
Q Consensus 101 GdA~~~e~L~~l~~fDfVFID 121 (218)
+|+ .+.++ -.+||+|+.+
T Consensus 144 ~d~--~~~~~-~~~fD~Vi~n 161 (251)
T TIGR03534 144 SDW--FEPLP-GGKFDLIVSN 161 (251)
T ss_pred Cch--hccCc-CCceeEEEEC
Confidence 999 77443 2489999985
No 61
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.54 E-value=9.5e-07 Score=82.74 Aligned_cols=119 Identities=15% Similarity=0.172 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCceEE--EEc
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQV--ITG 101 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~i~~--i~G 101 (218)
+.....+++..++......+|||+||+.|+ .++.+|..++ +|+ |+.+|.++++...++ ++.+.|+.+++ +.|
T Consensus 222 ~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~--kt~~la~~~~--~~~-v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~ 296 (426)
T TIGR00563 222 VQDASAQWVATWLAPQNEETILDACAAPGG--KTTHILELAP--QAQ-VVALDIHEHRLKRVYENLKRLGLTIKAETKDG 296 (426)
T ss_pred EECHHHHHHHHHhCCCCCCeEEEeCCCccH--HHHHHHHHcC--CCe-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 344566777777776677899999999999 7777887764 578 666688888776655 55688887444 667
Q ss_pred CCCchhhcC--CCCCccEEEEeCCccC-------------------------cHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 102 EADDEELMD--GLVDIDFLVVDSRRKD-------------------------FARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 102 dA~~~e~L~--~l~~fDfVFIDa~K~~-------------------------Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
|+ .+... .-.+||.||+|+.-.. ..+.++.+ +++++||.+|.--.-.
T Consensus 297 d~--~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 297 DG--RGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cc--ccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 77 54332 2237999999974221 23455555 6666699888765443
No 62
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.53 E-value=2.4e-06 Score=74.24 Aligned_cols=106 Identities=11% Similarity=0.147 Sum_probs=71.2
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc--eEEEEcCCCchhhcCCCCCcc
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS--PQVITGEADDEELMDGLVDID 116 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~--i~~i~GdA~~~e~L~~l~~fD 116 (218)
....+|||||||+|. .++.|+..+..++++ ++.++.++++.+.++. +.+.+.. ++++.||+ .+.. ++.+|
T Consensus 55 ~~~~~vLDlGcGtG~--~~~~l~~~~~~~~~~-v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~--~~~~--~~~~D 127 (247)
T PRK15451 55 QPGTQVYDLGCSLGA--ATLSVRRNIHHDNCK-IIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI--RDIA--IENAS 127 (247)
T ss_pred CCCCEEEEEcccCCH--HHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCCh--hhCC--CCCCC
Confidence 356799999999999 777787765444678 6667888888777654 4566664 99999999 6542 23688
Q ss_pred EEEEeCC-----ccCcHHHHHHh-cCCCCCeEEEE-eCCCCCC
Q 027826 117 FLVVDSR-----RKDFARVLRLA-NLSSRGAVLVC-KNAYSRN 152 (218)
Q Consensus 117 fVFIDa~-----K~~Y~~~~~~~-~L~~~GgvIV~-DNvl~~G 152 (218)
+|+.-.. ..+-..+++.+ +.+++||.+++ |.+...+
T Consensus 128 ~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~ 170 (247)
T PRK15451 128 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFED 170 (247)
T ss_pred EEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCc
Confidence 8775321 12335677777 55555776555 5554444
No 63
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.53 E-value=2.8e-06 Score=73.01 Aligned_cols=116 Identities=8% Similarity=0.115 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHh--cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc--eEEEEcC
Q 027826 28 GVAELVSAMAAG--WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS--PQVITGE 102 (218)
Q Consensus 28 ~~g~fL~~L~~~--~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~--i~~i~Gd 102 (218)
+..+++..++.. ....+|||||||+|. .++.++.....++++ ++.++.++++.+.++. +...+.. ++++.||
T Consensus 38 ~~~~~~~~l~~~~~~~~~~iLDlGcG~G~--~~~~l~~~~~~p~~~-v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d 114 (239)
T TIGR00740 38 NIITAIGMLAERFVTPDSNVYDLGCSRGA--ATLSARRNINQPNVK-IIGIDNSQPMVERCRQHIAAYHSEIPVEILCND 114 (239)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCCCCH--HHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECC
Confidence 344444444432 245689999999999 777788765444678 6667888888777654 4455543 8999999
Q ss_pred CCchhhcCCCCCccEEEEeCCc-----cCcHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 103 ADDEELMDGLVDIDFLVVDSRR-----KDFARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 103 A~~~e~L~~l~~fDfVFIDa~K-----~~Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
+ .+.- ++.+|+|+.-..- ++...+++.+ +.+++||.+++-+.+.
T Consensus 115 ~--~~~~--~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 115 I--RHVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred h--hhCC--CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 9 6532 3468887765321 2335677777 5555588877765443
No 64
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.49 E-value=1.4e-06 Score=61.63 Aligned_cols=95 Identities=28% Similarity=0.297 Sum_probs=65.6
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcC-CCCCccEEEE
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMD-GLVDIDFLVV 120 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~-~l~~fDfVFI 120 (218)
+|+|+||+.|. .+..++. ....+ ++.+|.+++....++.. ...+.. ++++.+|. .+... ...+||+||.
T Consensus 1 ~ildig~G~G~--~~~~~~~---~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGA--LALALAS---GPGAR-VTGVDISPVALELARKAAAALLADNVEVLKGDA--EELPPEADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccH--HHHHHhc---CCCCE-EEEEeCCHHHHHHHHHHHhcccccceEEEEcCh--hhhccccCCceEEEEE
Confidence 58999999998 6655665 22456 66678888776666533 333334 89999999 77665 3458999999
Q ss_pred eCCc----cCcHHHHHHh-cCCCCCeEEEEe
Q 027826 121 DSRR----KDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 121 Da~K----~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
+..- ..+..+++.+ .++++||.+++-
T Consensus 73 ~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 73 DPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 8863 2456677776 555568888763
No 65
>PRK14968 putative methyltransferase; Provisional
Probab=98.48 E-value=3.3e-06 Score=68.79 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc---eEEEEcCCCc
Q 027826 30 AELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS---PQVITGEADD 105 (218)
Q Consensus 30 g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~---i~~i~GdA~~ 105 (218)
..+|...+...+.++|||+||++|+ +++.++.. +.+ ++.+|.++++...++ ++...++. ++++.+|.
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~--~~~~l~~~----~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-- 82 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGI--VAIVAAKN----GKK-VVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDL-- 82 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCH--HHHHHHhh----cce-EEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccc--
Confidence 3444455555788899999999999 77666653 456 666788888766654 44566665 88899999
Q ss_pred hhhcCCCCCccEEEEeC
Q 027826 106 EELMDGLVDIDFLVVDS 122 (218)
Q Consensus 106 ~e~L~~l~~fDfVFIDa 122 (218)
.+.+++. +||+|+.+.
T Consensus 83 ~~~~~~~-~~d~vi~n~ 98 (188)
T PRK14968 83 FEPFRGD-KFDVILFNP 98 (188)
T ss_pred ccccccc-CceEEEECC
Confidence 7655432 799998763
No 66
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=98.48 E-value=8.4e-07 Score=76.23 Aligned_cols=123 Identities=17% Similarity=0.146 Sum_probs=73.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhc--CCCCcEEEEEEcCCccHHHHHHHHhhCCCc--eEEE
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVAS--RHTGGRHVCLVPDERSRSEYVHALGEAGFS--PQVI 99 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~--~~~~G~vitt~e~~~~~~~~a~~~~~agl~--i~~i 99 (218)
+..|...-.++.|+-..+|+.|+|+|++.|= |++++|.-+ ....|+|++ ++.+.... -.+......+. |+++
T Consensus 15 ~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GG--Sli~~A~ml~~~~~~~~Vig-iDIdir~~-~~~a~e~hp~~~rI~~i 90 (206)
T PF04989_consen 15 IQYPQDMVAYQELIWELKPDLIIETGIAHGG--SLIFWASMLELLGGKGKVIG-IDIDIRPH-NRKAIESHPMSPRITFI 90 (206)
T ss_dssp SS-HHHHHHHHHHHHHH--SEEEEE--TTSH--HHHHHHHHHHHTT---EEEE-EES-GTT---S-GGGG----TTEEEE
T ss_pred hcCHHHHHHHHHHHHHhCCCeEEEEecCCCc--hHHHHHHHHHHhCCCceEEE-EeCCcchh-chHHHhhccccCceEEE
Confidence 5678888999999999999999999999996 999876533 234678555 45533111 11222233333 9999
Q ss_pred EcCCCchhhcCCCC------CccEEEEeCC--ccCcHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 100 TGEADDEELMDGLV------DIDFLVVDSR--RKDFARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 100 ~GdA~~~e~L~~l~------~fDfVFIDa~--K~~Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
.||.++.+++.++. ...+|+.|++ .++-..-|+++ .++++|+.+|+-++..
T Consensus 91 ~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 91 QGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp ES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred ECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 99997777776642 5679999998 34555566666 7777799998877754
No 67
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.48 E-value=1.2e-06 Score=73.81 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=67.3
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCCCCcc
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGLVDID 116 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l~~fD 116 (218)
...+.+|||+|||+|. .++.||.. +.+ |+.++.++++.+.++.. ...++. ++++.+|. .+.-. -++||
T Consensus 28 ~~~~~~vLDiGcG~G~--~a~~La~~----g~~-V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~--~~~~~-~~~fD 97 (197)
T PRK11207 28 VVKPGKTLDLGCGNGR--NSLYLAAN----GFD-VTAWDKNPMSIANLERIKAAENLDNLHTAVVDL--NNLTF-DGEYD 97 (197)
T ss_pred cCCCCcEEEECCCCCH--HHHHHHHC----CCE-EEEEeCCHHHHHHHHHHHHHcCCCcceEEecCh--hhCCc-CCCcC
Confidence 4567999999999999 77777752 446 77778888877766654 477877 89999988 55311 13799
Q ss_pred EEEEeC-----CccCcHHHHHHh-cCCCCCeEE
Q 027826 117 FLVVDS-----RRKDFARVLRLA-NLSSRGAVL 143 (218)
Q Consensus 117 fVFIDa-----~K~~Y~~~~~~~-~L~~~GgvI 143 (218)
+|+.=. ....-..+++.+ .++++||.+
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEE
Confidence 997532 223456777777 666669974
No 68
>PRK08317 hypothetical protein; Provisional
Probab=98.47 E-value=3.8e-06 Score=70.29 Aligned_cols=110 Identities=17% Similarity=0.103 Sum_probs=73.8
Q ss_pred HHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhh-CCCceEEEEcCCCchhhcC
Q 027826 32 LVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGE-AGFSPQVITGEADDEELMD 110 (218)
Q Consensus 32 fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~-agl~i~~i~GdA~~~e~L~ 110 (218)
.+..++......+|||+||++|. .++.++....+ +++ ++.++.++.+...++.... .+..++++.+|+ .+.--
T Consensus 10 ~~~~~~~~~~~~~vLdiG~G~G~--~~~~~a~~~~~-~~~-v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~--~~~~~ 83 (241)
T PRK08317 10 RTFELLAVQPGDRVLDVGCGPGN--DARELARRVGP-EGR-VVGIDRSEAMLALAKERAAGLGPNVEFVRGDA--DGLPF 83 (241)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCH--HHHHHHHhcCC-CcE-EEEEeCCHHHHHHHHHHhhCCCCceEEEeccc--ccCCC
Confidence 34445566677899999999998 77777776532 567 5566788877666655432 222389999998 54211
Q ss_pred CCCCccEEEEeCCc---cCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 111 GLVDIDFLVVDSRR---KDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 111 ~l~~fDfVFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
.-.+||+|+...-- .+...+++.+ +++++||.+++-.
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 12389999987432 3566777777 6666688877644
No 69
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.47 E-value=3.9e-06 Score=70.69 Aligned_cols=99 Identities=19% Similarity=0.174 Sum_probs=69.0
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEcCCCchhhcCCCCCccE
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGEADDEELMDGLVDIDF 117 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~GdA~~~e~L~~l~~fDf 117 (218)
...+|||+||++|. .++.++...++ ..+ ++.+|.++.+.+.++.. ...++. ++++.+|+ .+....-.+||+
T Consensus 51 ~~~~vldiG~G~G~--~~~~l~~~~~~-~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~D~ 124 (239)
T PRK00216 51 PGDKVLDLACGTGD--LAIALAKAVGK-TGE-VVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA--EALPFPDNSFDA 124 (239)
T ss_pred CCCeEEEeCCCCCH--HHHHHHHHcCC-CCe-EEEEeCCHHHHHHHHHhhcccccccCeEEEeccc--ccCCCCCCCccE
Confidence 45799999999999 78778776642 467 66667888776666544 444443 89999999 664322248999
Q ss_pred EEEeCC---ccCcHHHHHHh-cCCCCCeEEEE
Q 027826 118 LVVDSR---RKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 118 VFIDa~---K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
|++... ..+....++.+ .++++||.+++
T Consensus 125 I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 125 VTIAFGLRNVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred EEEecccccCCCHHHHHHHHHHhccCCcEEEE
Confidence 998643 34567777777 66666886654
No 70
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.47 E-value=1e-06 Score=76.76 Aligned_cols=107 Identities=12% Similarity=0.102 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHh-cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc--eEEEEcC
Q 027826 27 SGVAELVSAMAAG-WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS--PQVITGE 102 (218)
Q Consensus 27 p~~g~fL~~L~~~-~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~--i~~i~Gd 102 (218)
+.+...|..|.+. .+.++||++|||+|+ .++.++.. . ..+ ++.++.++.+.+.++. ....++. +++..|+
T Consensus 104 ~tt~~~l~~l~~~~~~~~~VLDiGcGsG~--l~i~~~~~--g-~~~-v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~ 177 (250)
T PRK00517 104 PTTRLCLEALEKLVLPGKTVLDVGCGSGI--LAIAAAKL--G-AKK-VLAVDIDPQAVEAARENAELNGVELNVYLPQGD 177 (250)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCcHHH--HHHHHHHc--C-CCe-EEEEECCHHHHHHHHHHHHHcCCCceEEEccCC
Confidence 4555666666654 478899999999998 66544432 1 235 6667888888776654 4567774 4444333
Q ss_pred CCchhhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 103 ADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 103 A~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
. +||+|+.+...+.+..+++.+ +++++||.+++-.+.
T Consensus 178 ~----------~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 178 L----------KADVIVANILANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred C----------CcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 2 799999888777777888877 666669999886554
No 71
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.46 E-value=2e-06 Score=76.75 Aligned_cols=108 Identities=10% Similarity=0.005 Sum_probs=72.3
Q ss_pred HHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEEEEcCCCchhhc
Q 027826 33 VSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVITGEADDEELM 109 (218)
Q Consensus 33 L~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~i~GdA~~~e~L 109 (218)
+...+...+.++||+||||+|. .++.+++..+ +.+ ++.++. ++..+.++ +..+.|+. |+++.||+ .+.
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~--~~~~~~~~~p--~~~-~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~--~~~- 211 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGD--ISAAMLKHFP--ELD-STILNL-PGAIDLVNENAAEKGVADRMRGIAVDI--YKE- 211 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhH--HHHHHHHHCC--CCE-EEEEec-HHHHHHHHHHHHhCCccceEEEEecCc--cCC-
Confidence 3334445677899999999999 7888888765 467 555555 45555554 55688887 99999999 642
Q ss_pred CCCCCccEEEEeC-----CccCcHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 110 DGLVDIDFLVVDS-----RRKDFARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 110 ~~l~~fDfVFIDa-----~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
.++++|+|++-. +.+.....++.+ +.++|||.+++-+..+
T Consensus 212 -~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 212 -SYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred -CCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 234679987654 333445678777 5555577665544444
No 72
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.46 E-value=2.1e-06 Score=76.21 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHh---cCC-CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEE
Q 027826 26 ESGVAELVSAMAAG---WDA-RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQV 98 (218)
Q Consensus 26 ~p~~g~fL~~L~~~---~~a-k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~ 98 (218)
.|++..++...... .++ ++|||+|||+|+ .++.+|...+ +.+ ++.+|.+++....++.+ ...++. +++
T Consensus 95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~--i~l~la~~~~--~~~-v~avDis~~al~~a~~n~~~~~~~~~v~~ 169 (284)
T TIGR00536 95 RPETEELVEKALASLISQNPILHILDLGTGSGC--IALALAYEFP--NAE-VIAVDISPDALAVAEENAEKNQLEHRVEF 169 (284)
T ss_pred CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence 46677777665533 233 699999999999 5666776543 457 66678888877777655 577775 999
Q ss_pred EEcCCCchhhcCCCCCccEEEEeCC----------c------------------cCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 99 ITGEADDEELMDGLVDIDFLVVDSR----------R------------------KDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 99 i~GdA~~~e~L~~l~~fDfVFIDa~----------K------------------~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
+.||. .+.++. .+||+|+.+-. + ..|..+++.+ ..+++||++++.--.
T Consensus 170 ~~~d~--~~~~~~-~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 170 IQSNL--FEPLAG-QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred EECch--hccCcC-CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 99999 775542 27999998510 0 1355566666 555669998775543
Q ss_pred CCC
Q 027826 150 SRN 152 (218)
Q Consensus 150 ~~G 152 (218)
+.+
T Consensus 247 ~q~ 249 (284)
T TIGR00536 247 WQQ 249 (284)
T ss_pred cHH
Confidence 333
No 73
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.46 E-value=2.4e-06 Score=76.19 Aligned_cols=113 Identities=12% Similarity=0.016 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhc-CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEcC
Q 027826 27 SGVAELVSAMAAGW-DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGE 102 (218)
Q Consensus 27 p~~g~fL~~L~~~~-~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~Gd 102 (218)
|.+.-.|.+|-+.. ..++||++|||+|+ .++.+++. . .++ ++.++.++.+.+.++.+ ...++. ++++.++
T Consensus 144 ~tt~l~l~~l~~~~~~g~~VLDvGcGsG~--lai~aa~~--g-~~~-V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~ 217 (288)
T TIGR00406 144 PTTSLCLEWLEDLDLKDKNVIDVGCGSGI--LSIAALKL--G-AAK-VVGIDIDPLAVESARKNAELNQVSDRLQVKLIY 217 (288)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCChhH--HHHHHHHc--C-CCe-EEEEECCHHHHHHHHHHHHHcCCCcceEEEecc
Confidence 55555566665433 56899999999999 66655542 1 246 66678888877776654 566766 6667666
Q ss_pred CCchhhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 103 ADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 103 A~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
. ....+ .+||+|+.+.-...+.++++.+ +++++||.+++-.++
T Consensus 218 ~--~~~~~--~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 218 L--EQPIE--GKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred c--ccccC--CCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 5 33221 3899999988777777888887 666669999887665
No 74
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.46 E-value=2.2e-06 Score=72.98 Aligned_cols=108 Identities=14% Similarity=0.016 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchh
Q 027826 28 GVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEE 107 (218)
Q Consensus 28 ~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e 107 (218)
....+...+.+..++.+|||||||+|+ .+..|+..++ +++ ++.++.++++.+.++.... .++++.||+ .+
T Consensus 30 ~~~~~~~~l~~~~~~~~VLDiGCG~G~--~~~~L~~~~~--~~~-v~giDiS~~~l~~A~~~~~---~~~~~~~d~--~~ 99 (204)
T TIGR03587 30 KLAMFARALNRLPKIASILELGANIGM--NLAALKRLLP--FKH-IYGVEINEYAVEKAKAYLP---NINIIQGSL--FD 99 (204)
T ss_pred HHHHHHHHHHhcCCCCcEEEEecCCCH--HHHHHHHhCC--CCe-EEEEECCHHHHHHHHhhCC---CCcEEEeec--cC
Confidence 334445555566678899999999999 7777776543 456 7777888888777654321 267889999 76
Q ss_pred hcCCC-CCccEEEEeCCcc-----CcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 108 LMDGL-VDIDFLVVDSRRK-----DFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 108 ~L~~l-~~fDfVFIDa~K~-----~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
+.- .+||+||....-. .....++.+ ++.+ + .+++.+..
T Consensus 100 --~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~~-~-~v~i~e~~ 144 (204)
T TIGR03587 100 --PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCSN-R-YILIAEYY 144 (204)
T ss_pred --CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhcC-c-EEEEEEee
Confidence 322 3899999866432 223344444 4443 4 55554443
No 75
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.42 E-value=3.7e-06 Score=73.02 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=66.7
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCCCccE
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDF 117 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~~fDf 117 (218)
......+|||||||+|. .+..|+...+ +++ ++-++.++.+...++. .+ ++++.+|+ .+.. .-.+||+
T Consensus 26 ~~~~~~~vLDlGcG~G~--~~~~l~~~~p--~~~-v~gvD~s~~~~~~a~~---~~--~~~~~~d~--~~~~-~~~~fD~ 92 (255)
T PRK14103 26 GAERARRVVDLGCGPGN--LTRYLARRWP--GAV-IEALDSSPEMVAAARE---RG--VDARTGDV--RDWK-PKPDTDV 92 (255)
T ss_pred CCCCCCEEEEEcCCCCH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHh---cC--CcEEEcCh--hhCC-CCCCceE
Confidence 34567899999999999 6766777543 567 5666788877665542 22 78899999 7653 3358999
Q ss_pred EEEeCCc---cCcHHHHHHh-cCCCCCeEEEE
Q 027826 118 LVVDSRR---KDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 118 VFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
|+...-- .+-...++.+ ++++|||.+++
T Consensus 93 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~ 124 (255)
T PRK14103 93 VVSNAALQWVPEHADLLVRWVDELAPGSWIAV 124 (255)
T ss_pred EEEehhhhhCCCHHHHHHHHHHhCCCCcEEEE
Confidence 9997642 2335566666 55666999887
No 76
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.41 E-value=2.4e-06 Score=82.01 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=54.7
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEcCCCchhhcCCCCCccEE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGEADDEELMDGLVDIDFL 118 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~GdA~~~e~L~~l~~fDfV 118 (218)
+.+|||+|||+|+ .++.+|...+ +.+ ++.+|.+++..+.++.+ ...|+. ++++.||. .+.++. .+||+|
T Consensus 139 ~~~VLDlG~GsG~--iai~la~~~p--~~~-v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~--~~~~~~-~~fDlI 210 (506)
T PRK01544 139 FLNILELGTGSGC--IAISLLCELP--NAN-VIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW--FENIEK-QKFDFI 210 (506)
T ss_pred CCEEEEccCchhH--HHHHHHHHCC--CCe-EEEEECCHHHHHHHHHHHHHcCCccceeeeecch--hhhCcC-CCccEE
Confidence 4689999999999 6766777654 467 66678888887777655 577875 89999999 765542 379999
Q ss_pred EEe
Q 027826 119 VVD 121 (218)
Q Consensus 119 FID 121 (218)
+.+
T Consensus 211 vsN 213 (506)
T PRK01544 211 VSN 213 (506)
T ss_pred EEC
Confidence 973
No 77
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.40 E-value=2.8e-06 Score=71.82 Aligned_cols=99 Identities=11% Similarity=0.008 Sum_probs=70.8
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc--eEEEEcCCCchhhcCCCCCccEEE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS--PQVITGEADDEELMDGLVDIDFLV 119 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~--i~~i~GdA~~~e~L~~l~~fDfVF 119 (218)
++||||||++|. .++.+|...+ +.+ ++.++.++++...++. +.+.|+. ++++.+|+ .+. +.-++||+|+
T Consensus 1 ~~vLDiGcG~G~--~~~~la~~~~--~~~-v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~--~~~-~~~~~fD~I~ 72 (224)
T smart00828 1 KRVLDFGCGYGS--DLIDLAERHP--HLQ-LHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS--AKD-PFPDTYDLVF 72 (224)
T ss_pred CeEEEECCCCCH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHHHHhcCCCcceEEEeccc--ccC-CCCCCCCEee
Confidence 589999999998 7777777653 356 6667788887766654 4678886 89999998 554 1113899998
Q ss_pred EeCC---ccCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 120 VDSR---RKDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 120 IDa~---K~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
.-.- -.+...+|+.+ ++++|||.+++-+..
T Consensus 73 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 73 GFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred hHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 5321 13467888888 666669988876654
No 78
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.39 E-value=2.9e-06 Score=74.72 Aligned_cols=103 Identities=10% Similarity=-0.014 Sum_probs=69.6
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCC-CCcc
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGL-VDID 116 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l-~~fD 116 (218)
......+||||||++|. .+..||.. .+++ ++.++.++.+...++......-.++++.+|+ .+. +-- .+||
T Consensus 49 ~l~~~~~VLDiGcG~G~--~a~~la~~---~~~~-v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~--~~~-~~~~~~FD 119 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGG--GCKYINEK---YGAH-VHGVDICEKMVNIAKLRNSDKNKIEFEANDI--LKK-DFPENTFD 119 (263)
T ss_pred CCCCCCEEEEEcCCCCh--hhHHHHhh---cCCE-EEEEECCHHHHHHHHHHcCcCCceEEEECCc--ccC-CCCCCCeE
Confidence 34566799999999998 67666653 2457 6667888877766654432222389999999 542 211 3899
Q ss_pred EEEE-eCC----ccCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 117 FLVV-DSR----RKDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 117 fVFI-Da~----K~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
+|+. ++- ..+-..+++.+ ++++|||.+++-+..
T Consensus 120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9998 542 23556788887 666668888875543
No 79
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.38 E-value=3.5e-06 Score=74.88 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=68.8
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcCCCchhhcCCCC-Cc
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEADDEELMDGLV-DI 115 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~GdA~~~e~L~~l~-~f 115 (218)
...++.+|||+|||+|. .++.||.. +.+ |+.++.++.+.+.++.. ...++.+++..+|. .+. .++ +|
T Consensus 117 ~~~~~~~vLDlGcG~G~--~~~~la~~----g~~-V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~--~~~--~~~~~f 185 (287)
T PRK12335 117 QTVKPGKALDLGCGQGR--NSLYLALL----GFD-VTAVDINQQSLENLQEIAEKENLNIRTGLYDI--NSA--SIQEEY 185 (287)
T ss_pred hccCCCCEEEeCCCCCH--HHHHHHHC----CCE-EEEEECCHHHHHHHHHHHHHcCCceEEEEech--hcc--cccCCc
Confidence 44678899999999999 77767652 567 66778888877766554 46777888888888 442 123 89
Q ss_pred cEEEEeC-----CccCcHHHHHHh-cCCCCCeEEE
Q 027826 116 DFLVVDS-----RRKDFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 116 DfVFIDa-----~K~~Y~~~~~~~-~L~~~GgvIV 144 (218)
|+|+.=. +.++.+.+++.+ +++++||.++
T Consensus 186 D~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 186 DFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred cEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 9997653 334667788887 6666699743
No 80
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.37 E-value=2e-06 Score=74.80 Aligned_cols=106 Identities=19% Similarity=0.162 Sum_probs=65.3
Q ss_pred HHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEcCCCchhhcCCC
Q 027826 35 AMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITGEADDEELMDGL 112 (218)
Q Consensus 35 ~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~GdA~~~e~L~~l 112 (218)
.++......+||++|||+|. .++.++..+.+ +|+ |+.++.++++.+.++ ...+.+.. |+++.||| .+ ||--
T Consensus 41 ~~~~~~~g~~vLDv~~GtG~--~~~~l~~~~~~-~~~-v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da--~~-lp~~ 113 (233)
T PF01209_consen 41 KLLGLRPGDRVLDVACGTGD--VTRELARRVGP-NGK-VVGVDISPGMLEVARKKLKREGLQNIEFVQGDA--ED-LPFP 113 (233)
T ss_dssp HHHT--S--EEEEET-TTSH--HHHHHGGGSS----E-EEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT--TB---S-
T ss_pred hccCCCCCCEEEEeCCChHH--HHHHHHHHCCC-ccE-EEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH--HH-hcCC
Confidence 34456677899999999999 77778877654 678 555678888877765 45677776 99999999 55 4432
Q ss_pred -CCccEEEEeCC---ccCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 113 -VDIDFLVVDSR---RKDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 113 -~~fDfVFIDa~---K~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
++||.|++=-- -.+....++.+ ++++|||.+++=.
T Consensus 114 d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 114 DNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 38999997643 24566677776 7777799776533
No 81
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.36 E-value=3.8e-06 Score=78.59 Aligned_cols=95 Identities=21% Similarity=0.256 Sum_probs=73.4
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCC----CC
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGL----VD 114 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l----~~ 114 (218)
+..+|||+|||+|+ .++.||... .+ |+.+|.++++.+.++.+ ...|+. ++++.||+ .+.++++ .+
T Consensus 292 ~~~~vLDl~cG~G~--~sl~la~~~----~~-V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~--~~~l~~~~~~~~~ 362 (431)
T TIGR00479 292 GEELVVDAYCGVGT--FTLPLAKQA----KS-VVGIEVVPESVEKAQQNAELNGIANVEFLAGTL--ETVLPKQPWAGQI 362 (431)
T ss_pred CCCEEEEcCCCcCH--HHHHHHHhC----CE-EEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCH--HHHHHHHHhcCCC
Confidence 45799999999999 777777642 35 66778888887777654 567887 99999999 8887764 26
Q ss_pred ccEEEEeCCccC-cHHHHHHh-cCCCCCeEEEE
Q 027826 115 IDFLVVDSRRKD-FARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 115 fDfVFIDa~K~~-Y~~~~~~~-~L~~~GgvIV~ 145 (218)
||+|++|..... +.+.++.+ .+.+ +++|.+
T Consensus 363 ~D~vi~dPPr~G~~~~~l~~l~~l~~-~~ivyv 394 (431)
T TIGR00479 363 PDVLLLDPPRKGCAAEVLRTIIELKP-ERIVYV 394 (431)
T ss_pred CCEEEECcCCCCCCHHHHHHHHhcCC-CEEEEE
Confidence 999999998654 88898887 6655 677644
No 82
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.35 E-value=5.2e-06 Score=73.02 Aligned_cols=104 Identities=10% Similarity=0.062 Sum_probs=69.5
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-h---hCCCc-eEEEEcCCCchhhcCCC
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-G---EAGFS-PQVITGEADDEELMDGL 112 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~---~agl~-i~~i~GdA~~~e~L~~l 112 (218)
......+|||+|||+|+ .++.++....+ .++ |+.+|.++++.+.++.. . ..+.. ++++.+|+ .+ +|--
T Consensus 70 ~~~~~~~VLDlGcGtG~--~~~~la~~~~~-~~~-V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~--~~-lp~~ 142 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGD--LAFLLSEKVGS-DGK-VMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA--TD-LPFD 142 (261)
T ss_pred CCCCCCEEEEECCcCCH--HHHHHHHHhCC-CCE-EEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc--cc-CCCC
Confidence 44456799999999999 77767765433 467 66678888887766432 1 22333 99999999 55 3322
Q ss_pred C-CccEEEEeCCcc---CcHHHHHHh-cCCCCCeEEEEeCC
Q 027826 113 V-DIDFLVVDSRRK---DFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 113 ~-~fDfVFIDa~K~---~Y~~~~~~~-~L~~~GgvIV~DNv 148 (218)
+ +||+|++--.-+ +-...+..+ ++++|||.+++-+.
T Consensus 143 ~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 143 DCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 2 899998854322 345566666 66666888765443
No 83
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.35 E-value=6.5e-06 Score=69.07 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=67.2
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCCCccEEE
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDFLV 119 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~~fDfVF 119 (218)
.++++|||+|||+|+ .+..|+...+ ..+ ++.++.+++....++.... -.++++.+|+ .+....-++||+|+
T Consensus 33 ~~~~~vLDlG~G~G~--~~~~l~~~~~--~~~-~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~--~~~~~~~~~fD~vi 103 (240)
T TIGR02072 33 FIPASVLDIGCGTGY--LTRALLKRFP--QAE-FIALDISAGMLAQAKTKLS--ENVQFICGDA--EKLPLEDSSFDLIV 103 (240)
T ss_pred CCCCeEEEECCCccH--HHHHHHHhCC--CCc-EEEEeChHHHHHHHHHhcC--CCCeEEecch--hhCCCCCCceeEEE
Confidence 456799999999999 7777777654 356 5566777766555543322 1378899999 65432224899999
Q ss_pred EeCCc---cCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 120 VDSRR---KDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 120 IDa~K---~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
...-- .+...+++.+ +++++||.+++-.
T Consensus 104 ~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 104 SNLALQWCDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred EhhhhhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 87532 2455677777 6666699988754
No 84
>PRK14967 putative methyltransferase; Provisional
Probab=98.35 E-value=7.1e-06 Score=70.09 Aligned_cols=95 Identities=22% Similarity=0.217 Sum_probs=65.6
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcCCCchhhcCCCCCccEEEE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEADDEELMDGLVDIDFLVV 120 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~GdA~~~e~L~~l~~fDfVFI 120 (218)
-.+|||+|||+|+ -++.++.. . .++ ++.+|.++.+...++.+ ...++.++++.+|+ .+.++. .+||+|+.
T Consensus 37 ~~~vLDlGcG~G~--~~~~la~~--~-~~~-v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~--~~~~~~-~~fD~Vi~ 107 (223)
T PRK14967 37 GRRVLDLCTGSGA--LAVAAAAA--G-AGS-VTAVDISRRAVRSARLNALLAGVDVDVRRGDW--ARAVEF-RPFDVVVS 107 (223)
T ss_pred CCeEEEecCCHHH--HHHHHHHc--C-CCe-EEEEECCHHHHHHHHHHHHHhCCeeEEEECch--hhhccC-CCeeEEEE
Confidence 3699999999998 55556553 1 246 67778888877766544 56777789999999 775542 38999999
Q ss_pred eCC---------------------cc---CcHHHHHHh-cCCCCCeEEEE
Q 027826 121 DSR---------------------RK---DFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 121 Da~---------------------K~---~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
+.. ++ .+..+++.+ +++++||.+++
T Consensus 108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 831 00 134456655 56666888875
No 85
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.35 E-value=8.3e-06 Score=67.95 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=68.4
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCCCccEE
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDFL 118 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~~fDfV 118 (218)
..+..+|||+||++|+ .+..++...+. .++ ++.++.++.....++......-.++++.+|+ .+....-++||+|
T Consensus 37 ~~~~~~vldiG~G~G~--~~~~~~~~~~~-~~~-~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~--~~~~~~~~~~D~i 110 (223)
T TIGR01934 37 VFKGQKVLDVACGTGD--LAIELAKSAPD-RGK-VTGVDFSSEMLEVAKKKSELPLNIEFIQADA--EALPFEDNSFDAV 110 (223)
T ss_pred cCCCCeEEEeCCCCCh--hHHHHHHhcCC-Cce-EEEEECCHHHHHHHHHHhccCCCceEEecch--hcCCCCCCcEEEE
Confidence 4478899999999999 77777777643 367 5556777766555543322222289999999 7644222489999
Q ss_pred EEeC---CccCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 119 VVDS---RRKDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 119 FIDa---~K~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
+... ...+....++.+ .++++||.+++-.
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 111 TIAFGLRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 8753 234556667776 5555688877544
No 86
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.35 E-value=4.6e-06 Score=77.86 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=70.9
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCc-eEEEEcCCCchhhcCCCC--Cc
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS-PQVITGEADDEELMDGLV--DI 115 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~-i~~i~GdA~~~e~L~~l~--~f 115 (218)
.....+||||||+|. .++.+|...+ +.. ++-+|..+.+...+ +...+.|+. ++++.||| .+.+..++ ++
T Consensus 121 ~~~p~vLEIGcGsG~--~ll~lA~~~P--~~~-~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA--~~ll~~~~~~s~ 193 (390)
T PRK14121 121 NQEKILIEIGFGSGR--HLLYQAKNNP--NKL-FIGIEIHTPSIEQVLKQIELLNLKNLLIINYDA--RLLLELLPSNSV 193 (390)
T ss_pred CCCCeEEEEcCcccH--HHHHHHHhCC--CCC-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH--HHhhhhCCCCce
Confidence 345689999999999 8877888764 456 55567777665544 455678888 99999999 88776664 89
Q ss_pred cEEEE---eCC-ccCc-----HHHHHHh-cCCCCCeEEEE
Q 027826 116 DFLVV---DSR-RKDF-----ARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 116 DfVFI---Da~-K~~Y-----~~~~~~~-~L~~~GgvIV~ 145 (218)
|.|++ |-| |..+ +.+++.+ +++++||.+..
T Consensus 194 D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 194 EKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred eEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 99988 333 2222 5678887 66666886544
No 87
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.32 E-value=4.5e-06 Score=72.61 Aligned_cols=113 Identities=15% Similarity=0.105 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHH---hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhh-CCCc-eEEEE
Q 027826 26 ESGVAELVSAMAA---GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGE-AGFS-PQVIT 100 (218)
Q Consensus 26 ~p~~g~fL~~L~~---~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~-agl~-i~~i~ 100 (218)
.|++..++..+.. ..+..+|||+|||+|. .++.++...+ ..+ ++.+|.++.+...++.+.. .... ++++.
T Consensus 90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~--~~~~la~~~~--~~~-v~~iDis~~~l~~a~~n~~~~~~~~i~~~~ 164 (275)
T PRK09328 90 RPETEELVEWALEALLLKEPLRVLDLGTGSGA--IALALAKERP--DAE-VTAVDISPEALAVARRNAKHGLGARVEFLQ 164 (275)
T ss_pred CCCcHHHHHHHHHhccccCCCEEEEEcCcHHH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHHHHhCCCCcEEEEE
Confidence 4555666665552 3467799999999999 6666777654 467 6666888887777765543 2223 99999
Q ss_pred cCCCchhhcCCCCCccEEEEeCC-----------------------------ccCcHHHHHHh-cCCCCCeEEEEe
Q 027826 101 GEADDEELMDGLVDIDFLVVDSR-----------------------------RKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 101 GdA~~~e~L~~l~~fDfVFIDa~-----------------------------K~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
+|. .+.++ -.+||+|+.+-. ...|..+++.+ +++++||.+++.
T Consensus 165 ~d~--~~~~~-~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 165 GDW--FEPLP-GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred ccc--cCcCC-CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 999 66544 138999987521 01245556665 666669999873
No 88
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.30 E-value=2.2e-06 Score=75.62 Aligned_cols=86 Identities=23% Similarity=0.320 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEEEEcCCCc
Q 027826 29 VAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVITGEADD 105 (218)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~i~GdA~~ 105 (218)
-+-+|..++.....++|||+|||+|. ++|+.|-+-+..+ |+-+|.++++++.|+ +.+.++++ |+++++|.
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~----l~L~la~r~~~a~-I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di-- 104 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGA----LGLLLAQRTEKAK-IVGVEIQEEAAEMAQRNVALNPLEERIQVIEADI-- 104 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCH----HHHHHhccCCCCc-EEEEEeCHHHHHHHHHHHHhCcchhceeEehhhH--
Confidence 46789999999999999999999998 5566665534567 778899999888775 45678888 99999999
Q ss_pred hhhcCCCC--CccEEEEe
Q 027826 106 EELMDGLV--DIDFLVVD 121 (218)
Q Consensus 106 ~e~L~~l~--~fDfVFID 121 (218)
.+..+... +||+|+.-
T Consensus 105 ~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 105 KEFLKALVFASFDLIICN 122 (248)
T ss_pred HHhhhcccccccCEEEeC
Confidence 88888765 69999864
No 89
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.30 E-value=1.4e-05 Score=72.02 Aligned_cols=111 Identities=13% Similarity=0.143 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHH----HHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eE
Q 027826 24 SHESGVAELVSA----MAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQ 97 (218)
Q Consensus 24 ~i~p~~g~fL~~----L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~ 97 (218)
+..+.+++-|.. ++...+..+|||+|||+|. -++.+|. .+.+ |+.+|.++++.+.++.+ ...|+. ++
T Consensus 152 Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~--~sl~la~----~~~~-V~gvD~s~~av~~A~~n~~~~~l~~v~ 224 (315)
T PRK03522 152 QTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGG--FGLHCAT----PGMQ-LTGIEISAEAIACAKQSAAELGLTNVQ 224 (315)
T ss_pred ecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCH--HHHHHHh----cCCE-EEEEeCCHHHHHHHHHHHHHcCCCceE
Confidence 344555444432 2223357899999999999 6666665 2456 66678888887777655 578887 99
Q ss_pred EEEcCCCchhhcCCC-CCccEEEEeCCccCc-HHHHHHh-cCCCCCeEEE
Q 027826 98 VITGEADDEELMDGL-VDIDFLVVDSRRKDF-ARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 98 ~i~GdA~~~e~L~~l-~~fDfVFIDa~K~~Y-~~~~~~~-~L~~~GgvIV 144 (218)
++.||+ .+.++.. .+||+|++|-....+ ....+++ .+.+ +.+|.
T Consensus 225 ~~~~D~--~~~~~~~~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~-~~ivy 271 (315)
T PRK03522 225 FQALDS--TQFATAQGEVPDLVLVNPPRRGIGKELCDYLSQMAP-RFILY 271 (315)
T ss_pred EEEcCH--HHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHcCC-CeEEE
Confidence 999999 8876544 379999999876654 4555666 5555 45554
No 90
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.29 E-value=3.9e-06 Score=71.46 Aligned_cols=115 Identities=18% Similarity=0.163 Sum_probs=78.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCceEEEEcC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQVITGE 102 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~i~~i~Gd 102 (218)
.+.|...+++...+...+.++||||||++|. .++.++.. +.+ ++.++.++.....++. +...+..++++.++
T Consensus 31 ~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~--~~~~l~~~----~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~ 103 (233)
T PRK05134 31 RINPLRLNYIREHAGGLFGKRVLDVGCGGGI--LSESMARL----GAD-VTGIDASEENIEVARLHALESGLKIDYRQTT 103 (233)
T ss_pred HhhHHHHHHHHHhccCCCCCeEEEeCCCCCH--HHHHHHHc----CCe-EEEEcCCHHHHHHHHHHHHHcCCceEEEecC
Confidence 4556667777777777788999999999998 55555542 356 6666888877666554 44666678888898
Q ss_pred CCchhhcCCC-CCccEEEEeCCc---cCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 103 ADDEELMDGL-VDIDFLVVDSRR---KDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 103 A~~~e~L~~l-~~fDfVFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
+ .+....- ++||+|+....- .+....++.+ +++++||.+++..
T Consensus 104 ~--~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 104 A--EELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred H--HHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 8 7665333 489999875321 2345566776 5555588877653
No 91
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.29 E-value=6.4e-06 Score=74.57 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
.+.|..+..+..++....-.+|||+|||+|. .++-. +.. +.+ ++..|.++++...++ +++.+|+. ++++.+
T Consensus 165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~--~liea--a~~--~~~-v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~ 237 (329)
T TIGR01177 165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGG--FLIEA--GLM--GAK-VIGCDIDWKMVAGARINLEHYGIEDFFVKRG 237 (329)
T ss_pred CCCHHHHHHHHHHhCCCCcCEEEECCCCCCH--HHHHH--HHh--CCe-EEEEcCCHHHHHHHHHHHHHhCCCCCeEEec
Confidence 5677788888777777677799999999998 44332 222 456 556688888776665 55688888 899999
Q ss_pred CCCchhhcCCC-CCccEEEEeCC-------c-----cCcHHHHHHh-cCCCCCeEEEE
Q 027826 102 EADDEELMDGL-VDIDFLVVDSR-------R-----KDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 102 dA~~~e~L~~l-~~fDfVFIDa~-------K-----~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
|+ .+ ++.- .+||.|+.|.. + ..|.++++.+ +++++||.+++
T Consensus 238 D~--~~-l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 238 DA--TK-LPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred ch--hc-CCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 99 66 3332 38999999832 1 2267788877 55556886654
No 92
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.28 E-value=1.1e-05 Score=67.94 Aligned_cols=113 Identities=14% Similarity=0.101 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHh----cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc-eEEE
Q 027826 26 ESGVAELVSAMAAG----WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS-PQVI 99 (218)
Q Consensus 26 ~p~~g~fL~~L~~~----~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~-i~~i 99 (218)
.+...+++...+.. .+..+|||+||++|+ .+..++.. +.+ ++.++.++.....++. +...++. +++.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~--~~~~l~~~----~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~ 98 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGL--LSEPLARL----GAN-VTGIDASEENIEVAKLHAKKDPLLKIEYR 98 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCH--HHHHHHhc----CCe-EEEEeCCHHHHHHHHHHHHHcCCCceEEE
Confidence 45566777777764 458899999999999 66555542 345 5566777777665554 4566774 8999
Q ss_pred EcCCCchhhcCCC-CCccEEEEeC---CccCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 100 TGEADDEELMDGL-VDIDFLVVDS---RRKDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 100 ~GdA~~~e~L~~l-~~fDfVFIDa---~K~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
.+++ .+..... .+||+|+... ...+...+++.+ .++++||.+++..
T Consensus 99 ~~d~--~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 99 CTSV--EDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred eCCH--HHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999 8776554 4899999863 234566777777 5556688777643
No 93
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.26 E-value=4.7e-06 Score=71.96 Aligned_cols=109 Identities=13% Similarity=0.103 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCc
Q 027826 26 ESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADD 105 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~ 105 (218)
....++.|..++...++.+|||+|||+|. .+..|+. .+.+ ++.++.++++.+.++.... .++++.+|+
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~--~~~~l~~----~~~~-v~~~D~s~~~l~~a~~~~~---~~~~~~~d~-- 94 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGW--MSRYWRE----RGSQ-VTALDLSPPMLAQARQKDA---ADHYLAGDI-- 94 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCH--HHHHHHH----cCCe-EEEEECCHHHHHHHHhhCC---CCCEEEcCc--
Confidence 34555555554455567899999999998 4444443 2456 6667888877666553321 257888998
Q ss_pred hhhcCCC-CCccEEEEeCCc---cCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 106 EELMDGL-VDIDFLVVDSRR---KDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 106 ~e~L~~l-~~fDfVFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
.+ ++-- .+||+|+....- .+....+..+ +++++||.+++-.
T Consensus 95 ~~-~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 95 ES-LPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred cc-CcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 55 3322 389999976532 3445666666 6666699998753
No 94
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.24 E-value=2.4e-06 Score=63.80 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=61.7
Q ss_pred EEEeCcCcchHHHHHHHHHhcCC-CCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcCCCchhhcCCC-CCccEEEE-
Q 027826 45 IVETWSHGGATATSVGLAVASRH-TGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEADDEELMDGL-VDIDFLVV- 120 (218)
Q Consensus 45 ILEiGt~~GyiGsaiglA~a~~~-~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~GdA~~~e~L~~l-~~fDfVFI- 120 (218)
|||+|||+|- .+..++...+. +..+ ++-++.++++...++.. .+.+..++++++|+ .+ ++.. .+||+|+.
T Consensus 1 ILDlgcG~G~--~~~~l~~~~~~~~~~~-~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~--~~-l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGR--VTRALARRFDAGPSSR-VIGVDISPEMLELAKKRFSEDGPKVRFVQADA--RD-LPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSH--HHHHHHHHS-----SE-EEEEES-HHHHHHHHHHSHHTTTTSEEEESCT--TC-HHHHSSSEEEEEE-
T ss_pred CEEeecCCcH--HHHHHHHHhhhcccce-EEEEECCHHHHHHHHHhchhcCCceEEEECCH--hH-CcccCCCeeEEEEc
Confidence 7999999998 77777776621 1246 66778889887766554 56777899999999 77 3433 49999999
Q ss_pred eC-----CccCcHHHHHHh-cCCCCCe
Q 027826 121 DS-----RRKDFARVLRLA-NLSSRGA 141 (218)
Q Consensus 121 Da-----~K~~Y~~~~~~~-~L~~~Gg 141 (218)
-. ++++-..+|+.+ ++++|||
T Consensus 75 ~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 44 234556677776 6666576
No 95
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.23 E-value=9.6e-06 Score=72.73 Aligned_cols=109 Identities=15% Similarity=0.168 Sum_probs=77.1
Q ss_pred HHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCC-CcEEEEEEcCCccHHHHHHHH-h-hC-C-C-c-eEEEEcC
Q 027826 30 AELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHT-GGRHVCLVPDERSRSEYVHAL-G-EA-G-F-S-PQVITGE 102 (218)
Q Consensus 30 g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~-~G~vitt~e~~~~~~~~a~~~-~-~a-g-l-~-i~~i~Gd 102 (218)
..++.+++. -+||+||.||.|.|- ++ -..+... --+ ++.+|.++...+.++.+ - -+ + . + ++++.+|
T Consensus 66 l~h~~~~ah-~~pk~VLiiGgGdG~--tl---Revlkh~~ve~-i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D 138 (282)
T COG0421 66 LAHVPLLAH-PNPKRVLIIGGGDGG--TL---REVLKHLPVER-ITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD 138 (282)
T ss_pred HHhchhhhC-CCCCeEEEECCCccH--HH---HHHHhcCCcce-EEEEEcCHHHHHHHHHhccCcccccCCCceEEEecc
Confidence 333334333 355899999999886 33 2222221 235 78889999988877654 2 12 1 1 2 8999999
Q ss_pred CCchhhcCCCC-CccEEEEeCCcc-Cc------HHHHHHh-cCCCCCeEEEEeC
Q 027826 103 ADDEELMDGLV-DIDFLVVDSRRK-DF------ARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 103 A~~~e~L~~l~-~fDfVFIDa~K~-~Y------~~~~~~~-~L~~~GgvIV~DN 147 (218)
+ .+.+++.. +||+|++|+.-. .. .++|+.| +.++++||+|+-+
T Consensus 139 g--~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 139 G--VEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred H--HHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 9 99999887 799999999744 33 7899999 6666699999874
No 96
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.22 E-value=4.3e-06 Score=76.15 Aligned_cols=99 Identities=16% Similarity=0.078 Sum_probs=68.3
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCC--ceEEEEcCCCchhhcCCCCCccE
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGF--SPQVITGEADDEELMDGLVDIDF 117 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl--~i~~i~GdA~~~e~L~~l~~fDf 117 (218)
...+|||||||+|+ .+..||. .+++ |+-+|.++++.+.++... ..++ .|+++++++ .+.-..-.+||+
T Consensus 131 ~g~~ILDIGCG~G~--~s~~La~----~g~~-V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~da--e~l~~~~~~FD~ 201 (322)
T PLN02396 131 EGLKFIDIGCGGGL--LSEPLAR----MGAT-VTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTA--EKLADEGRKFDA 201 (322)
T ss_pred CCCEEEEeeCCCCH--HHHHHHH----cCCE-EEEEeCCHHHHHHHHHHHHhcCcccceeEEecCH--HHhhhccCCCCE
Confidence 34689999999999 5655553 2567 777788888887776543 3344 289999999 664222238999
Q ss_pred EEEeCCc---cCcHHHHHHh-cCCCCCeEEEEeCC
Q 027826 118 LVVDSRR---KDFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 118 VFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~DNv 148 (218)
|+.=.-- .+...+++.+ +++++||.+++...
T Consensus 202 Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 202 VLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred EEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 9964321 2445677777 66666999998754
No 97
>PTZ00146 fibrillarin; Provisional
Probab=98.22 E-value=1.6e-05 Score=71.73 Aligned_cols=99 Identities=13% Similarity=0.048 Sum_probs=62.9
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhh--cCC-CCCccEE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEEL--MDG-LVDIDFL 118 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~--L~~-l~~fDfV 118 (218)
-.+||++||++|+ ++..+|..+.+ .|+ |+.+|.++++.+......+.--.|.++.+|+ ..- ++. ++.||+|
T Consensus 133 G~~VLDLGaG~G~--~t~~lAdiVG~-~G~-VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da--~~p~~y~~~~~~vDvV 206 (293)
T PTZ00146 133 GSKVLYLGAASGT--TVSHVSDLVGP-EGV-VYAVEFSHRSGRDLTNMAKKRPNIVPIIEDA--RYPQKYRMLVPMVDVI 206 (293)
T ss_pred CCEEEEeCCcCCH--HHHHHHHHhCC-CCE-EEEEECcHHHHHHHHHHhhhcCCCEEEECCc--cChhhhhcccCCCCEE
Confidence 3589999999999 88889987754 578 6666777643221111111111278899999 542 221 2489999
Q ss_pred EEeCCccC-cHHHHHHh-cCCCCCeEEEEe
Q 027826 119 VVDSRRKD-FARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 119 FIDa~K~~-Y~~~~~~~-~L~~~GgvIV~D 146 (218)
|.|..-.+ +..+...+ .++++||.+++.
T Consensus 207 ~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 207 FADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 99997433 33333344 566668988883
No 98
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.21 E-value=2.2e-05 Score=74.01 Aligned_cols=111 Identities=15% Similarity=0.155 Sum_probs=78.2
Q ss_pred CCHHHHH-HHHHHHHhc---CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEE
Q 027826 25 HESGVAE-LVSAMAAGW---DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQV 98 (218)
Q Consensus 25 i~p~~g~-fL~~L~~~~---~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~ 98 (218)
+.+.+.+ ++..++... ...+|||+|||+|. .++.||.. ..+ ++.+|.++++.+.++.+ ...|+. +++
T Consensus 277 ~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~--~sl~la~~----~~~-V~gvD~s~~al~~A~~n~~~~~~~~v~~ 349 (443)
T PRK13168 277 VNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGN--FTLPLARQ----AAE-VVGVEGVEAMVERARENARRNGLDNVTF 349 (443)
T ss_pred cCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCH--HHHHHHHh----CCE-EEEEeCCHHHHHHHHHHHHHcCCCceEE
Confidence 4455444 333333332 34799999999999 66667654 246 66678889887777655 467877 999
Q ss_pred EEcCCCchhhcCCC----CCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEE
Q 027826 99 ITGEADDEELMDGL----VDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 99 i~GdA~~~e~L~~l----~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
+.||+ .+.++.+ .+||+|++|-....-.+.++.+ ++.+ +++|.+
T Consensus 350 ~~~d~--~~~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~~~~-~~ivyv 398 (443)
T PRK13168 350 YHANL--EEDFTDQPWALGGFDKVLLDPPRAGAAEVMQALAKLGP-KRIVYV 398 (443)
T ss_pred EEeCh--HHhhhhhhhhcCCCCEEEECcCCcChHHHHHHHHhcCC-CeEEEE
Confidence 99999 8877542 2799999998877677788777 7666 555443
No 99
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.19 E-value=5.2e-06 Score=59.52 Aligned_cols=89 Identities=21% Similarity=0.174 Sum_probs=59.6
Q ss_pred EEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcCCCchhhcCCC-CCccEEEEeCC
Q 027826 46 VETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEADDEELMDGL-VDIDFLVVDSR 123 (218)
Q Consensus 46 LEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~GdA~~~e~L~~l-~~fDfVFIDa~ 123 (218)
||+||++|. ++..|+.. .+.+ ++.++.++++.+.++.. ...+ ++++.+|+ .+. +-- ++||+|+.-.-
T Consensus 1 LdiG~G~G~--~~~~l~~~---~~~~-v~~~D~~~~~~~~~~~~~~~~~--~~~~~~d~--~~l-~~~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGR--FAAALAKR---GGAS-VTGIDISEEMLEQARKRLKNEG--VSFRQGDA--EDL-PFPDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSH--HHHHHHHT---TTCE-EEEEES-HHHHHHHHHHTTTST--EEEEESBT--TSS-SS-TT-EEEEEEESH
T ss_pred CEecCcCCH--HHHHHHhc---cCCE-EEEEeCCHHHHHHHHhcccccC--chheeehH--HhC-ccccccccccccccc
Confidence 799999999 77777775 2567 66667878766655543 3333 56999999 654 432 39999998764
Q ss_pred c---cCcHHHHHHh-cCCCCCeEEEE
Q 027826 124 R---KDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 124 K---~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
- ++..++++.+ +++++||.+++
T Consensus 70 ~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 70 LHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 3 4556677777 77777999875
No 100
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.18 E-value=1.8e-05 Score=71.83 Aligned_cols=155 Identities=13% Similarity=0.155 Sum_probs=90.9
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCC--CceEEEEcCCCchhhcCCCCCcc
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAG--FSPQVITGEADDEELMDGLVDID 116 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~ag--l~i~~i~GdA~~~e~L~~l~~fD 116 (218)
...++|||||||+|| .++.|+..- ..+ |+-++.++.+...++... ..+ ..|+++.+++ .+ ++.-.+||
T Consensus 121 l~g~~VLDIGCG~G~--~~~~la~~g---~~~-V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~--e~-lp~~~~FD 191 (322)
T PRK15068 121 LKGRTVLDVGCGNGY--HMWRMLGAG---AKL-VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI--EQ-LPALKAFD 191 (322)
T ss_pred CCCCEEEEeccCCcH--HHHHHHHcC---CCE-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH--HH-CCCcCCcC
Confidence 456899999999999 777777642 235 555666665443333222 222 2389999988 54 44434899
Q ss_pred EEEEeCC---ccCcHHHHHHh-cCCCCCeEEEEeCCCCCCccch------hhhhhhccCCCCCeEEEEee---------c
Q 027826 117 FLVVDSR---RKDFARVLRLA-NLSSRGAVLVCKNAYSRNDSTF------RWKNVLDGRSRRLVRSVYLP---------V 177 (218)
Q Consensus 117 fVFIDa~---K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~~~~------~~~~~~~~~~~~~~~s~~lP---------i 177 (218)
+||.=+. ..+...+++.+ +.+++||.+|++.....+.... +|.. .+ + ..++| .
T Consensus 192 ~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~-~~-----~--~~~lps~~~l~~~L~ 263 (322)
T PRK15068 192 TVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAK-MR-----N--VYFIPSVPALKNWLE 263 (322)
T ss_pred EEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhc-Cc-----c--ceeCCCHHHHHHHHH
Confidence 9997332 23456677777 5566699999987766654211 1111 00 0 01122 3
Q ss_pred CCcEEEEEEeecCCccCCCCCCCCceEeccccccccc
Q 027826 178 GKGLDIAHVATSGAVSSSAKGGSRWIKHFDRQSGEEH 214 (218)
Q Consensus 178 GDGl~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (218)
.-|+...+.......+....|+..|+ +.+|.+++
T Consensus 264 ~aGF~~i~~~~~~~t~~~eqr~t~w~---~~~sl~~f 297 (322)
T PRK15068 264 RAGFKDVRIVDVSVTTTEEQRKTEWM---TTESLADF 297 (322)
T ss_pred HcCCceEEEEeCCCCCccccccccCc---ccCcHhhc
Confidence 45666666554444456666888998 34454443
No 101
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.17 E-value=2.1e-05 Score=74.12 Aligned_cols=111 Identities=9% Similarity=-0.000 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCceEEEEcCCCchhh
Q 027826 30 AELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFSPQVITGEADDEEL 108 (218)
Q Consensus 30 g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~i~~i~GdA~~~e~ 108 (218)
..++..+ ......+|||||||+|. .++.||... +.+ ++.++.++++...++... ..+..++++.+|+ .+.
T Consensus 256 e~l~~~~-~~~~~~~vLDiGcG~G~--~~~~la~~~---~~~-v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~--~~~ 326 (475)
T PLN02336 256 KEFVDKL-DLKPGQKVLDVGCGIGG--GDFYMAENF---DVH-VVGIDLSVNMISFALERAIGRKCSVEFEVADC--TKK 326 (475)
T ss_pred HHHHHhc-CCCCCCEEEEEeccCCH--HHHHHHHhc---CCE-EEEEECCHHHHHHHHHHhhcCCCceEEEEcCc--ccC
Confidence 3444443 23456799999999999 666677643 456 666778887776665443 2233389999999 653
Q ss_pred cCCCCCccEEEEeCCc---cCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 109 MDGLVDIDFLVVDSRR---KDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 109 L~~l~~fDfVFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
.-.-++||+|+.-..- .+...+++.+ +++++||.+++....
T Consensus 327 ~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 327 TYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred CCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 2111379999985432 2456677777 666669998876543
No 102
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.15 E-value=9.1e-06 Score=72.36 Aligned_cols=115 Identities=18% Similarity=0.227 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHH---hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEEEE
Q 027826 27 SGVAELVSAMAA---GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVIT 100 (218)
Q Consensus 27 p~~g~fL~~L~~---~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~i~ 100 (218)
..+.+-+..++. +..-.+|||||||.|- .++.+|+.. |.+ |+.+..+++..+.++ ...++|++ ++++.
T Consensus 45 ~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~--~~~~~a~~~---g~~-v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~ 118 (273)
T PF02353_consen 45 EAQERKLDLLCEKLGLKPGDRVLDIGCGWGG--LAIYAAERY---GCH-VTGITLSEEQAEYARERIREAGLEDRVEVRL 118 (273)
T ss_dssp HHHHHHHHHHHTTTT--TT-EEEEES-TTSH--HHHHHHHHH-----E-EEEEES-HHHHHHHHHHHHCSTSSSTEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCCccH--HHHHHHHHc---CcE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence 344444555554 4455699999999998 787777753 456 777788888777765 45689998 99999
Q ss_pred cCCCchhhcCCCCCccEEE-EeCC----ccCcHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 101 GEADDEELMDGLVDIDFLV-VDSR----RKDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 101 GdA~~~e~L~~l~~fDfVF-IDa~----K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
+|. .+.-+ +||-|+ |.+- +++|+.||+.+ .+++|||.++..-+....
T Consensus 119 ~D~--~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 119 QDY--RDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp S-G--GG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred eec--cccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 999 66333 888754 4433 36899999999 666669999988766544
No 103
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.14 E-value=8.6e-06 Score=71.35 Aligned_cols=100 Identities=17% Similarity=0.246 Sum_probs=69.5
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCC-CcEEEEEEcCCccHHHHHHHH-h--hCCCc---eEEEEcCCCchhhcCCC
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHT-GGRHVCLVPDERSRSEYVHAL-G--EAGFS---PQVITGEADDEELMDGL 112 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~-~G~vitt~e~~~~~~~~a~~~-~--~agl~---i~~i~GdA~~~e~L~~l 112 (218)
.+|++||-||.|.|. ++=.+. ... -.+ |+.+|.++...+.++.+ . ..++. ++++.+|| .+.|.+.
T Consensus 75 ~~p~~VLiiGgG~G~--~~~ell---~~~~~~~-i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg--~~~l~~~ 146 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGG--TARELL---KHPPVES-ITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG--RKFLKET 146 (246)
T ss_dssp SST-EEEEEESTTSH--HHHHHT---TSTT-SE-EEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH--HHHHHTS
T ss_pred CCcCceEEEcCCChh--hhhhhh---hcCCcce-EEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh--HHHHHhc
Confidence 379999999999887 432222 222 245 88899999988877655 2 23333 99999999 9999886
Q ss_pred C--CccEEEEeCCccC-------cHHHHHHh-cCCCCCeEEEEeC
Q 027826 113 V--DIDFLVVDSRRKD-------FARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 113 ~--~fDfVFIDa~K~~-------Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
. .||+|++|+.-.. -.++|+.+ +.+++||+++.--
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 147 QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 4 6999999987522 25788888 4444599998753
No 104
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.14 E-value=3.9e-05 Score=67.29 Aligned_cols=87 Identities=21% Similarity=0.208 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhc----CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEc
Q 027826 27 SGVAELVSAMAAGW----DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITG 101 (218)
Q Consensus 27 p~~g~fL~~L~~~~----~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~G 101 (218)
+++..++....... ++.+|||+|||+|. -++.++...+ +.+ ++.+|.++...+.++.+ ...| ++++.|
T Consensus 68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~--i~l~la~~~~--~~~-v~~vDis~~al~~A~~N~~~~~--~~~~~~ 140 (251)
T TIGR03704 68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGA--VGAALAAALD--GIE-LHAADIDPAAVRCARRNLADAG--GTVHEG 140 (251)
T ss_pred ccHHHHHHHHHHhhcccCCCCEEEEecCchHH--HHHHHHHhCC--CCE-EEEEECCHHHHHHHHHHHHHcC--CEEEEe
Confidence 44444444444332 24589999999999 5555666543 346 66678988887777655 4555 488999
Q ss_pred CCCchhhcCC-C-CCccEEEEeC
Q 027826 102 EADDEELMDG-L-VDIDFLVVDS 122 (218)
Q Consensus 102 dA~~~e~L~~-l-~~fDfVFIDa 122 (218)
|. .+.++. + ++||+|+.|.
T Consensus 141 D~--~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 141 DL--YDALPTALRGRVDILAANA 161 (251)
T ss_pred ec--hhhcchhcCCCEeEEEECC
Confidence 99 877654 3 3799999985
No 105
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.12 E-value=3.2e-05 Score=72.88 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHhc-CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcC
Q 027826 25 HESGVAELVSAMAAGW-DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGE 102 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~-~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~Gd 102 (218)
-.|++..++..+.... ...+|||+|||+|. -++.++...+ +.+ ++.+|.++++.+.++.+ .+.+..++++.||
T Consensus 234 PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~--IaiaLA~~~p--~a~-VtAVDiS~~ALe~AreNa~~~g~rV~fi~gD 308 (423)
T PRK14966 234 PRPETEHLVEAVLARLPENGRVWDLGTGSGA--VAVTVALERP--DAF-VRASDISPPALETARKNAADLGARVEFAHGS 308 (423)
T ss_pred CCccHHHHHHHhhhccCCCCEEEEEeChhhH--HHHHHHHhCC--CCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 3567777777776543 45699999999999 5555665433 467 66678888887777655 4667679999999
Q ss_pred CCchhh-cCCCCCccEEEEeC
Q 027826 103 ADDEEL-MDGLVDIDFLVVDS 122 (218)
Q Consensus 103 A~~~e~-L~~l~~fDfVFIDa 122 (218)
. .+. ++.-.+||+|+.+-
T Consensus 309 l--~e~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 309 W--FDTDMPSEGKWDIIVSNP 327 (423)
T ss_pred h--hccccccCCCccEEEECC
Confidence 9 664 22223799999864
No 106
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.11 E-value=3e-05 Score=72.06 Aligned_cols=110 Identities=10% Similarity=0.078 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhc---CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCC
Q 027826 27 SGVAELVSAMAAGW---DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEA 103 (218)
Q Consensus 27 p~~g~fL~~L~~~~---~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA 103 (218)
..+..-+..+++.. ...+|||||||+|. .++.+|... +.+ |+.++.++++.+.++... .++.+++..+|.
T Consensus 150 ~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~--~a~~la~~~---g~~-V~giDlS~~~l~~A~~~~-~~l~v~~~~~D~ 222 (383)
T PRK11705 150 EAQEAKLDLICRKLQLKPGMRVLDIGCGWGG--LARYAAEHY---GVS-VVGVTISAEQQKLAQERC-AGLPVEIRLQDY 222 (383)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCCccH--HHHHHHHHC---CCE-EEEEeCCHHHHHHHHHHh-ccCeEEEEECch
Confidence 33444455555543 45699999999998 666666542 457 666788888877766443 355588888998
Q ss_pred CchhhcCCCCCccEEEEe----C-CccCcHHHHHHh-cCCCCCeEEEEeCC
Q 027826 104 DDEELMDGLVDIDFLVVD----S-RRKDFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 104 ~~~e~L~~l~~fDfVFID----a-~K~~Y~~~~~~~-~L~~~GgvIV~DNv 148 (218)
.+. + ++||.|+.= . ...+|..+|+.+ ++++|||.++.-.+
T Consensus 223 --~~l-~--~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 223 --RDL-N--GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred --hhc-C--CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 654 2 489998632 2 245678899998 66667999888654
No 107
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.09 E-value=6e-05 Score=61.61 Aligned_cols=99 Identities=17% Similarity=0.046 Sum_probs=64.6
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchhhcCCCCCccEE
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEELMDGLVDIDFL 118 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e~L~~l~~fDfV 118 (218)
....+|||||||+|. .+..++.. +++ ++.+|.++.+.+.++..... .. ++++.+|+ .+....-..||.|
T Consensus 12 ~~~~~vLEiG~G~G~--lt~~l~~~----~~~-v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~--~~~~~~~~~~d~v 81 (169)
T smart00650 12 RPGDTVLEIGPGKGA--LTEELLER----AAR-VTAIEIDPRLAPRLREKFAA-ADNLTVIHGDA--LKFDLPKLQPYKV 81 (169)
T ss_pred CCcCEEEEECCCccH--HHHHHHhc----CCe-EEEEECCHHHHHHHHHHhcc-CCCEEEEECch--hcCCccccCCCEE
Confidence 344689999999999 55555543 457 77788988877666544322 33 89999999 7753222269999
Q ss_pred EEeCCccCcHHHHHHh---cCCCCCeEEEEeCC
Q 027826 119 VVDSRRKDFARVLRLA---NLSSRGAVLVCKNA 148 (218)
Q Consensus 119 FIDa~K~~Y~~~~~~~---~L~~~GgvIV~DNv 148 (218)
|.+---....+.+..+ .....+|++++-.-
T Consensus 82 i~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 82 VGNLPYNISTPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred EECCCcccHHHHHHHHHhcCCCcceEEEEEEHH
Confidence 9886533334555554 22234788776554
No 108
>PRK06922 hypothetical protein; Provisional
Probab=98.09 E-value=4.2e-05 Score=75.60 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcCCCchhh
Q 027826 30 AELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEADDEEL 108 (218)
Q Consensus 30 g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~GdA~~~e~ 108 (218)
..+...+....+..+|||||||+|. .+..+|...+ +++ ++.++.++.+.+.++.. ...+..++++.||+ .+
T Consensus 407 ~~~k~~i~d~~~g~rVLDIGCGTG~--ls~~LA~~~P--~~k-VtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa--~d- 478 (677)
T PRK06922 407 ADDKRIILDYIKGDTIVDVGAGGGV--MLDMIEEETE--DKR-IYGIDISENVIDTLKKKKQNEGRSWNVIKGDA--IN- 478 (677)
T ss_pred HHHHHHHhhhcCCCEEEEeCCCCCH--HHHHHHHhCC--CCE-EEEEECCHHHHHHHHHHhhhcCCCeEEEEcch--Hh-
Confidence 3445556667788999999999998 6666776643 578 66678888877666543 34555688999999 76
Q ss_pred cCC-CC--CccEEEEeCC----------------ccCcHHHHHHh-cCCCCCeEEEE-eCCCC
Q 027826 109 MDG-LV--DIDFLVVDSR----------------RKDFARVLRLA-NLSSRGAVLVC-KNAYS 150 (218)
Q Consensus 109 L~~-l~--~fDfVFIDa~----------------K~~Y~~~~~~~-~L~~~GgvIV~-DNvl~ 150 (218)
++. ++ +||+|+.-.- .+...+.++.+ +++++||.+++ |.++.
T Consensus 479 Lp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 479 LSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred CccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 443 33 8999985421 12345666666 55555666655 66554
No 109
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.09 E-value=2.8e-05 Score=68.37 Aligned_cols=93 Identities=9% Similarity=0.010 Sum_probs=60.9
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCC-CCccEEE
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGL-VDIDFLV 119 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l-~~fDfVF 119 (218)
+..+|||||||+|+ .+..|+...+..++..++-++.++++...|+.. . -.++++.+|+ .+ +|-- .+||+|+
T Consensus 85 ~~~~vLDiGcG~G~--~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~--~-~~~~~~~~d~--~~-lp~~~~sfD~I~ 156 (272)
T PRK11088 85 KATALLDIGCGEGY--YTHALADALPEITTMQLFGLDISKVAIKYAAKR--Y-PQVTFCVASS--HR-LPFADQSLDAII 156 (272)
T ss_pred CCCeEEEECCcCCH--HHHHHHHhcccccCCeEEEECCCHHHHHHHHHh--C-CCCeEEEeec--cc-CCCcCCceeEEE
Confidence 45789999999999 777788776543332266678888766555321 1 1278899998 65 3422 3899998
Q ss_pred EeCCccCcHHHHHHh-cCCCCCeEEEE
Q 027826 120 VDSRRKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 120 IDa~K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
.--.+.. ++.+ +++++||.+++
T Consensus 157 ~~~~~~~----~~e~~rvLkpgG~li~ 179 (272)
T PRK11088 157 RIYAPCK----AEELARVVKPGGIVIT 179 (272)
T ss_pred EecCCCC----HHHHHhhccCCCEEEE
Confidence 6443333 3444 55556888876
No 110
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.08 E-value=3.6e-05 Score=66.07 Aligned_cols=94 Identities=17% Similarity=0.052 Sum_probs=63.2
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCC----------------CceEEEEcCCC
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAG----------------FSPQVITGEAD 104 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~ag----------------l~i~~i~GdA~ 104 (218)
...+||++|||.|. -+++||. .|.-|+-+|..+...+.+ .+++| ..|+++++|.
T Consensus 34 ~~~rvLd~GCG~G~--da~~LA~-----~G~~V~gvD~S~~Ai~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~- 103 (213)
T TIGR03840 34 AGARVFVPLCGKSL--DLAWLAE-----QGHRVLGVELSEIAVEQF--FAENGLTPTVTQQGEFTRYRAGNIEIFCGDF- 103 (213)
T ss_pred CCCeEEEeCCCchh--HHHHHHh-----CCCeEEEEeCCHHHHHHH--HHHcCCCcceeccccceeeecCceEEEEccC-
Confidence 44699999999999 9988985 244488888988655432 22332 2388899999
Q ss_pred chhhcCC-CCCccEEEEe-----CCccCcHHHHHHh-cCCCCCeEEEE
Q 027826 105 DEELMDG-LVDIDFLVVD-----SRRKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 105 ~~e~L~~-l~~fDfVFID-----a~K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
.+.-+. .++||+||=- -.++.-.+|++.+ .++++||.++.
T Consensus 104 -~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 104 -FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred -CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 764433 2467777522 2345667788888 77777986443
No 111
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.06 E-value=9e-05 Score=68.02 Aligned_cols=115 Identities=20% Similarity=0.226 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCceEEEEcCC
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQVITGEA 103 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~i~~i~GdA 103 (218)
+++.+..+|..|-. ....+|||+|||+|+ .++.++...+ +.+ ++.+|.++.+...++. +.+.++..+++.+|.
T Consensus 181 lD~gt~lLl~~l~~-~~~g~VLDlGCG~G~--ls~~la~~~p--~~~-v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~ 254 (342)
T PRK09489 181 LDVGSQLLLSTLTP-HTKGKVLDVGCGAGV--LSAVLARHSP--KIR-LTLSDVSAAALESSRATLAANGLEGEVFASNV 254 (342)
T ss_pred CCHHHHHHHHhccc-cCCCeEEEeccCcCH--HHHHHHHhCC--CCE-EEEEECCHHHHHHHHHHHHHcCCCCEEEEccc
Confidence 44555555665543 334589999999999 5655666433 457 6667888877776654 567777778888888
Q ss_pred CchhhcCCCCCccEEEEeCCc--------cCcHHHHHHh-c-CCCCCeEEEEeCCC
Q 027826 104 DDEELMDGLVDIDFLVVDSRR--------KDFARVLRLA-N-LSSRGAVLVCKNAY 149 (218)
Q Consensus 104 ~~~e~L~~l~~fDfVFIDa~K--------~~Y~~~~~~~-~-L~~~GgvIV~DNvl 149 (218)
.+.++ ++||+|+.+--- ....+++..+ + |.|.|-++++-|-+
T Consensus 255 --~~~~~--~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~ 306 (342)
T PRK09489 255 --FSDIK--GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (342)
T ss_pred --ccccC--CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC
Confidence 55332 389999986421 2235566665 4 55534455566654
No 112
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.05 E-value=5.3e-05 Score=70.57 Aligned_cols=115 Identities=10% Similarity=0.015 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCC---c-eEEE
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGF---S-PQVI 99 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl---~-i~~i 99 (218)
++..+--||..|-. ....+|||+|||+|+ .++.++...+ +.+ |+-+|.++.+.+.++.+ ...+. . ++++
T Consensus 213 LD~GtrllL~~lp~-~~~~~VLDLGCGtGv--i~i~la~~~P--~~~-V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~ 286 (378)
T PRK15001 213 LDIGARFFMQHLPE-NLEGEIVDLGCGNGV--IGLTLLDKNP--QAK-VVFVDESPMAVASSRLNVETNMPEALDRCEFM 286 (378)
T ss_pred cChHHHHHHHhCCc-ccCCeEEEEeccccH--HHHHHHHhCC--CCE-EEEEECCHHHHHHHHHHHHHcCcccCceEEEE
Confidence 44444445554433 223699999999999 5555666543 467 55567777777776644 33332 2 8999
Q ss_pred EcCCCchhhcCCCCCccEEEEeCCcc--------CcHHHHHHh-cCCCCCeEE-EEeCC
Q 027826 100 TGEADDEELMDGLVDIDFLVVDSRRK--------DFARVLRLA-NLSSRGAVL-VCKNA 148 (218)
Q Consensus 100 ~GdA~~~e~L~~l~~fDfVFIDa~K~--------~Y~~~~~~~-~L~~~GgvI-V~DNv 148 (218)
.+|+ .+.++. .+||+|+.+-.-+ .-.++|..+ +.+++||.+ ++-|-
T Consensus 287 ~~D~--l~~~~~-~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 287 INNA--LSGVEP-FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred Eccc--cccCCC-CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 9999 654432 3799999963211 112455555 444446654 44443
No 113
>PRK06202 hypothetical protein; Provisional
Probab=98.05 E-value=7.8e-05 Score=63.79 Aligned_cols=109 Identities=14% Similarity=0.150 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCC--CCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcCCCchh
Q 027826 31 ELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRH--TGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEADDEE 107 (218)
Q Consensus 31 ~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~--~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~GdA~~~e 107 (218)
+.+..++...++.+|||||||+|. .+..|+..++. .+.+ ++-++.++++.+.++.. ...+ ++++.+++ .+
T Consensus 50 ~~~~~~l~~~~~~~iLDlGcG~G~--~~~~L~~~~~~~g~~~~-v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~--~~ 122 (232)
T PRK06202 50 RLLRPALSADRPLTLLDIGCGGGD--LAIDLARWARRDGLRLE-VTAIDPDPRAVAFARANPRRPG--VTFRQAVS--DE 122 (232)
T ss_pred HHHHHhcCCCCCcEEEEeccCCCH--HHHHHHHHHHhCCCCcE-EEEEcCCHHHHHHHHhccccCC--CeEEEEec--cc
Confidence 444444444677899999999999 66667765432 1346 67778888887766543 2334 45555555 22
Q ss_pred hcCCC-CCccEEEEeCCccCc-----HHHHHHh-cCCCCCeEEEEeCCC
Q 027826 108 LMDGL-VDIDFLVVDSRRKDF-----ARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 108 ~L~~l-~~fDfVFIDa~K~~Y-----~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
++.- ++||+|+.-.--++. ...+..+ ++++ |++ ++.+..
T Consensus 123 -l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~-~i~dl~ 168 (232)
T PRK06202 123 -LVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLV-LHNDLI 168 (232)
T ss_pred -ccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC-eeE-EEeccc
Confidence 2322 389999987433322 3456565 6666 544 444443
No 114
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.02 E-value=1.4e-05 Score=72.02 Aligned_cols=115 Identities=12% Similarity=0.140 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHhcC-CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcCC
Q 027826 26 ESGVAELVSAMAAGWD-ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEA 103 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~~-ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~GdA 103 (218)
-|.+.--|.+|-+... -++||++|||+|. -+ +|.+.. |.+.|+.++.+|.....++.+ ...|++.++.....
T Consensus 145 H~TT~lcl~~l~~~~~~g~~vLDvG~GSGI--La--iaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~ 218 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVKPGKRVLDVGCGSGI--LA--IAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS 218 (295)
T ss_dssp CHHHHHHHHHHHHHSSTTSEEEEES-TTSH--HH--HHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCCcHHH--HH--HHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe
Confidence 3566677777777765 4799999999998 33 444433 333366778999877777655 56777733322223
Q ss_pred CchhhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 104 DDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 104 ~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
.+... .+||+|+-.--.+--......+ .++++||.+|.-=++-
T Consensus 219 --~~~~~--~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 219 --EDLVE--GKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp --SCTCC--S-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred --ccccc--ccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccH
Confidence 23232 6999999766555445555554 4455599998755543
No 115
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.01 E-value=0.00012 Score=61.87 Aligned_cols=102 Identities=24% Similarity=0.253 Sum_probs=66.0
Q ss_pred HHHHHHHH--hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc--eEEEEcCCCc
Q 027826 31 ELVSAMAA--GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS--PQVITGEADD 105 (218)
Q Consensus 31 ~fL~~L~~--~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~--i~~i~GdA~~ 105 (218)
.++..+.. .....+|||||||+|+ .+..|+.. +.+ ++.++.++.+.+.++. +...++. ++++.+|.
T Consensus 51 ~~~~~l~~~~~~~~~~vLDvGcG~G~--~~~~l~~~----~~~-v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-- 121 (230)
T PRK07580 51 TVLSWLPADGDLTGLRILDAGCGVGS--LSIPLARR----GAK-VVASDISPQMVEEARERAPEAGLAGNITFEVGDL-- 121 (230)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCH--HHHHHHHc----CCE-EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc--
Confidence 44555544 4567899999999999 77666643 356 6777888888777654 4567773 88998886
Q ss_pred hhhcCCCCCccEEEEeCCc-----cCcHHHHHHh-cCCCCCeEEEE
Q 027826 106 EELMDGLVDIDFLVVDSRR-----KDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 106 ~e~L~~l~~fDfVFIDa~K-----~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
.. . .++||+|+.-..- ......++.+ .+.+ |++++.
T Consensus 122 ~~-~--~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~ 163 (230)
T PRK07580 122 ES-L--LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTR-GSLIFT 163 (230)
T ss_pred hh-c--cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcC-CeEEEE
Confidence 32 1 2489999875332 2333455555 5555 555444
No 116
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.00 E-value=7.2e-05 Score=67.07 Aligned_cols=115 Identities=16% Similarity=-0.004 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHH----hc-CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhh--CCCceEE
Q 027826 27 SGVAELVSAMAA----GW-DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGE--AGFSPQV 98 (218)
Q Consensus 27 p~~g~fL~~L~~----~~-~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~--agl~i~~ 98 (218)
+...++|...++ .. ...+|||+|||+|. -+..|+.+++. +.+ ++.++.++++.+.+ +.+.. -++.|+.
T Consensus 44 r~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~--~t~~Ll~~l~~-~~~-~~~iDiS~~mL~~a~~~l~~~~p~~~v~~ 119 (301)
T TIGR03438 44 RTEAAILERHADEIAAATGAGCELVELGSGSSR--KTRLLLDALRQ-PAR-YVPIDISADALKESAAALAADYPQLEVHG 119 (301)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCeEEecCCCcch--hHHHHHHhhcc-CCe-EEEEECCHHHHHHHHHHHHhhCCCceEEE
Confidence 444455554433 22 45899999999999 78788888753 456 67788988876554 44543 2345888
Q ss_pred EEcCCCchhhcCCCC-----CccEEEEeCCccC-----cHHHHHHh-cCCCCCeEEEEeC
Q 027826 99 ITGEADDEELMDGLV-----DIDFLVVDSRRKD-----FARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 99 i~GdA~~~e~L~~l~-----~fDfVFIDa~K~~-----Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
++||. .+.++-.. ...++|.+..-.+ -..+|+.+ ..+++||.++++=
T Consensus 120 i~gD~--~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 120 ICADF--TQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEcc--cchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 99999 65443222 3456777764333 33466666 5555588877543
No 117
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.99 E-value=3.6e-05 Score=65.67 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=61.8
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchhhcC----CC--
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEELMD----GL-- 112 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e~L~----~l-- 112 (218)
....+||||||++|. .+..++....+ .|+ |+.+|.++ + .++. +++++||+...++++ .+
T Consensus 50 ~~~~~VLDlG~GtG~--~t~~l~~~~~~-~~~-V~aVDi~~-~---------~~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 50 KPGMTVVDLGAAPGG--WSQYAVTQIGD-KGR-VIACDILP-M---------DPIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCEEEEEcccCCH--HHHHHHHHcCC-Cce-EEEEeccc-c---------cCCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 455689999999998 66667765533 567 55566665 1 1122 899999993322232 23
Q ss_pred CCccEEEEeCCcc-------Cc-------HHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 113 VDIDFLVVDSRRK-------DF-------ARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 113 ~~fDfVFIDa~K~-------~Y-------~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
.+||+|+.|.... +. .+.++.+ +++++||.+++- .|.+
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~--~~~~ 168 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK--VFQG 168 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE--EecC
Confidence 3899999997431 11 2345555 666669999885 3544
No 118
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.99 E-value=0.00011 Score=67.97 Aligned_cols=115 Identities=9% Similarity=0.029 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHH-HHHh---cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eE
Q 027826 24 SHESGVAELVSA-MAAG---WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQ 97 (218)
Q Consensus 24 ~i~p~~g~fL~~-L~~~---~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~ 97 (218)
+..+.+.+-|.. +... ...++|||+|||+|. -++.+|. . +.+ |+.+|.++...+.++.+ ...|+. ++
T Consensus 212 Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~--~~l~la~--~--~~~-v~~vE~~~~av~~a~~N~~~~~~~~~~ 284 (374)
T TIGR02085 212 QTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGG--FGLHCAG--P--DTQ-LTGIEIESEAIACAQQSAQMLGLDNLS 284 (374)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccH--HHHHHhh--c--CCe-EEEEECCHHHHHHHHHHHHHcCCCcEE
Confidence 445555555533 3332 356899999999998 4444442 2 346 66678888877766654 577886 99
Q ss_pred EEEcCCCchhhcCCC-CCccEEEEeCCcc-CcHHHHHHh-cCCCCCeEEEEeC
Q 027826 98 VITGEADDEELMDGL-VDIDFLVVDSRRK-DFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 98 ~i~GdA~~~e~L~~l-~~fDfVFIDa~K~-~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
++.+|+ .+.++.. .+||+||+|-... ...+.++.+ .+.|++=|.|.-|
T Consensus 285 ~~~~d~--~~~~~~~~~~~D~vi~DPPr~G~~~~~l~~l~~~~p~~ivyvsc~ 335 (374)
T TIGR02085 285 FAALDS--AKFATAQMSAPELVLVNPPRRGIGKELCDYLSQMAPKFILYSSCN 335 (374)
T ss_pred EEECCH--HHHHHhcCCCCCEEEECCCCCCCcHHHHHHHHhcCCCeEEEEEeC
Confidence 999999 8877654 4799999998754 456677777 6666344444444
No 119
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.99 E-value=5.5e-05 Score=71.35 Aligned_cols=103 Identities=9% Similarity=0.093 Sum_probs=66.4
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchhh-cCCC-CC
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEEL-MDGL-VD 114 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e~-L~~l-~~ 114 (218)
...+.++|||||||+|. .+..|+.. .++ ++.++.++++.+.++.... ... ++++.+|+ .+. ++-- ++
T Consensus 34 ~~~~~~~vLDlGcG~G~--~~~~la~~----~~~-v~giD~s~~~l~~a~~~~~-~~~~i~~~~~d~--~~~~~~~~~~~ 103 (475)
T PLN02336 34 PPYEGKSVLELGAGIGR--FTGELAKK----AGQ-VIALDFIESVIKKNESING-HYKNVKFMCADV--TSPDLNISDGS 103 (475)
T ss_pred CccCCCEEEEeCCCcCH--HHHHHHhh----CCE-EEEEeCCHHHHHHHHHHhc-cCCceEEEEecc--cccccCCCCCC
Confidence 33456799999999999 67667753 346 6667888877655443222 123 89999999 642 3322 38
Q ss_pred ccEEEEeCCccC-----cHHHHHHh-cCCCCCeEEEE-eCCCC
Q 027826 115 IDFLVVDSRRKD-----FARVLRLA-NLSSRGAVLVC-KNAYS 150 (218)
Q Consensus 115 fDfVFIDa~K~~-----Y~~~~~~~-~L~~~GgvIV~-DNvl~ 150 (218)
||+|+....-.. ..+.++.+ +++++||.+++ ||++.
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 999998763221 24566666 55566887766 65543
No 120
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.99 E-value=5.1e-05 Score=66.11 Aligned_cols=105 Identities=20% Similarity=0.223 Sum_probs=74.6
Q ss_pred HHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCC-ceEEEEcCCCchhhcCCC
Q 027826 34 SAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGF-SPQVITGEADDEELMDGL 112 (218)
Q Consensus 34 ~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl-~i~~i~GdA~~~e~L~~l 112 (218)
+.+....++..+||||||.|= ..+.||...|+. -.|-++...+-...+.+...++|+ .++++.+|| .++|+.+
T Consensus 41 ~~~f~~~~~pi~lEIGfG~G~--~l~~~A~~nP~~--nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA--~~~l~~~ 114 (227)
T COG0220 41 SALFGNNNAPIVLEIGFGMGE--FLVEMAKKNPEK--NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDA--VEVLDYL 114 (227)
T ss_pred HHHhCCCCCcEEEEECCCCCH--HHHHHHHHCCCC--CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCH--HHHHHhc
Confidence 334444445789999999998 888899987764 335555454444555566679999 599999999 9999876
Q ss_pred C---C---ccEEEEeCCc--c------CcHHHHHHh-cCCCCCeEEE
Q 027826 113 V---D---IDFLVVDSRR--K------DFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 113 ~---~---fDfVFIDa~K--~------~Y~~~~~~~-~L~~~GgvIV 144 (218)
. + +.+-|=|-|. . -|+.+++.+ +.+++||+|-
T Consensus 115 ~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~ 161 (227)
T COG0220 115 IPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLH 161 (227)
T ss_pred CCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEE
Confidence 2 4 4555557762 2 378899998 5555588874
No 121
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.95 E-value=8.4e-05 Score=64.02 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=63.6
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCC----------------ceEEEEcCCCc
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGF----------------SPQVITGEADD 105 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl----------------~i~~i~GdA~~ 105 (218)
..+||++|||.|. .+++||. .|.-|+-+|.++...+.+ ..+.++ .|++..+|.
T Consensus 38 ~~rvL~~gCG~G~--da~~LA~-----~G~~V~avD~s~~Ai~~~--~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~-- 106 (218)
T PRK13255 38 GSRVLVPLCGKSL--DMLWLAE-----QGHEVLGVELSELAVEQF--FAENGLTPQTRQSGEFEHYQAGEITIYCGDF-- 106 (218)
T ss_pred CCeEEEeCCCChH--hHHHHHh-----CCCeEEEEccCHHHHHHH--HHHcCCCccccccccccccccCceEEEECcc--
Confidence 4699999999999 9999985 244477788888644432 222222 288899999
Q ss_pred hhhcCC-CCCccEEE-----EeCCccCcHHHHHHh-cCCCCCeE
Q 027826 106 EELMDG-LVDIDFLV-----VDSRRKDFARVLRLA-NLSSRGAV 142 (218)
Q Consensus 106 ~e~L~~-l~~fDfVF-----IDa~K~~Y~~~~~~~-~L~~~Ggv 142 (218)
.+.-+. +..||+|| +=-.++.-.+|++.+ .++++||+
T Consensus 107 ~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 107 FALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCR 150 (218)
T ss_pred cCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCe
Confidence 776443 34789888 444566778899998 77766874
No 122
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.95 E-value=8.3e-05 Score=61.71 Aligned_cols=98 Identities=18% Similarity=0.196 Sum_probs=60.6
Q ss_pred HHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchhhc----
Q 027826 35 AMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEELM---- 109 (218)
Q Consensus 35 ~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e~L---- 109 (218)
.+.....-++|||+|||+|. .+..++..... .++ |+.+|.++.+ ... ++++.+|+...+.+
T Consensus 26 ~~~~i~~g~~VLDiG~GtG~--~~~~l~~~~~~-~~~-v~~vDis~~~----------~~~~i~~~~~d~~~~~~~~~l~ 91 (188)
T TIGR00438 26 KFKLIKPGDTVLDLGAAPGG--WSQVAVEQVGG-KGR-VIAVDLQPMK----------PIENVDFIRGDFTDEEVLNKIR 91 (188)
T ss_pred HhcccCCCCEEEEecCCCCH--HHHHHHHHhCC-Cce-EEEEeccccc----------cCCCceEEEeeCCChhHHHHHH
Confidence 33344566899999999998 55555554432 467 6666777743 122 78888888211211
Q ss_pred CCC--CCccEEEEeCCcc-------Cc-------HHHHHHh-cCCCCCeEEEEe
Q 027826 110 DGL--VDIDFLVVDSRRK-------DF-------ARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 110 ~~l--~~fDfVFIDa~K~-------~Y-------~~~~~~~-~L~~~GgvIV~D 146 (218)
+.+ ++||+||.|+... ++ ...++.+ +++++||.+++-
T Consensus 92 ~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 92 ERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 122 2799999997421 11 3456665 565668988874
No 123
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.94 E-value=0.00019 Score=65.26 Aligned_cols=120 Identities=10% Similarity=-0.065 Sum_probs=72.1
Q ss_pred CCCHHHHHHHH--HHHH---hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCC--c
Q 027826 24 SHESGVAELVS--AMAA---GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGF--S 95 (218)
Q Consensus 24 ~i~p~~g~fL~--~L~~---~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl--~ 95 (218)
.++++-..-+. .++. ....++|||||||+|| .++.|+.. . ... ++-++.++.+...++..+ ..+. .
T Consensus 99 ~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~--~~~~~~~~--g-~~~-v~GiDpS~~ml~q~~~~~~~~~~~~~ 172 (314)
T TIGR00452 99 KIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGY--HMWRMLGH--G-AKS-LVGIDPTVLFLCQFEAVRKLLDNDKR 172 (314)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcH--HHHHHHHc--C-CCE-EEEEcCCHHHHHHHHHHHHHhccCCC
Confidence 45666655444 2333 2445899999999999 66556543 1 135 555666666544333322 1221 2
Q ss_pred eEEEEcCCCchhhcCCCCCccEEEEeCCc---cCcHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 96 PQVITGEADDEELMDGLVDIDFLVVDSRR---KDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 96 i~~i~GdA~~~e~L~~l~~fDfVFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
+.++.++. .+ ++...+||.||.=+-- .+..+++..+ +.+++||.+|.......|
T Consensus 173 v~~~~~~i--e~-lp~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g 230 (314)
T TIGR00452 173 AILEPLGI--EQ-LHELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDG 230 (314)
T ss_pred eEEEECCH--HH-CCCCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence 77887777 44 4545589999976532 2334667776 666669999887655444
No 124
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.92 E-value=9.6e-05 Score=68.11 Aligned_cols=101 Identities=19% Similarity=0.177 Sum_probs=70.6
Q ss_pred CCHHHHHHHH-HHHHhcC--CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEE
Q 027826 25 HESGVAELVS-AMAAGWD--ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVI 99 (218)
Q Consensus 25 i~p~~g~fL~-~L~~~~~--ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i 99 (218)
+.+.+.+-|. .+....+ ..++||++||+|. -++.||..+ .+ |+.+|.++...+.++.+ ...|+. ++++
T Consensus 187 ~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~--~sl~la~~~----~~-v~~vE~~~~ai~~a~~N~~~~~~~~v~~~ 259 (362)
T PRK05031 187 PNAAVNEKMLEWALDATKGSKGDLLELYCGNGN--FTLALARNF----RR-VLATEISKPSVAAAQYNIAANGIDNVQII 259 (362)
T ss_pred cCHHHHHHHHHHHHHHhhcCCCeEEEEeccccH--HHHHHHhhC----CE-EEEEECCHHHHHHHHHHHHHhCCCcEEEE
Confidence 4444444444 4444333 2579999999998 565666643 35 66678888887776655 567887 9999
Q ss_pred EcCCCchhhcCCC---------------C-CccEEEEeCCcc-CcHHHHHHh
Q 027826 100 TGEADDEELMDGL---------------V-DIDFLVVDSRRK-DFARVLRLA 134 (218)
Q Consensus 100 ~GdA~~~e~L~~l---------------~-~fDfVFIDa~K~-~Y~~~~~~~ 134 (218)
.+|+ .+.|+.+ . +||+||+|-... .+.+.++.+
T Consensus 260 ~~d~--~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l 309 (362)
T PRK05031 260 RMSA--EEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLV 309 (362)
T ss_pred ECCH--HHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHH
Confidence 9999 8877643 1 589999998754 467777777
No 125
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.91 E-value=0.00012 Score=65.83 Aligned_cols=118 Identities=16% Similarity=0.145 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHHHHhc------CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-
Q 027826 24 SHESGVAELVSAMAAGW------DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS- 95 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~------~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~- 95 (218)
|--||+.++..+.+... +...|||+|||+|. .+++|+..++ .++ ++.++..+.....|..+ .+++++
T Consensus 125 IPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGa--Islsll~~L~--~~~-v~AiD~S~~Ai~La~eN~qr~~l~g 199 (328)
T KOG2904|consen 125 IPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGA--ISLSLLHGLP--QCT-VTAIDVSKAAIKLAKENAQRLKLSG 199 (328)
T ss_pred ecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccH--HHHHHHhcCC--Cce-EEEEeccHHHHHHHHHHHHHHhhcC
Confidence 34688888887776543 33479999999999 7888998887 467 66667777665666555 588887
Q ss_pred -eEEE----EcCCCchhhcCCCC-CccEE-------------E-------------EeCCccCcHHHHHHh----cCCCC
Q 027826 96 -PQVI----TGEADDEELMDGLV-DIDFL-------------V-------------VDSRRKDFARVLRLA----NLSSR 139 (218)
Q Consensus 96 -i~~i----~GdA~~~e~L~~l~-~fDfV-------------F-------------IDa~K~~Y~~~~~~~----~L~~~ 139 (218)
|+++ ++|+ .+..+.+. ++|++ + +|+.-+.|..++..+ +++++
T Consensus 200 ~i~v~~~~me~d~--~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~ 277 (328)
T KOG2904|consen 200 RIEVIHNIMESDA--SDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQP 277 (328)
T ss_pred ceEEEeccccccc--ccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhccc
Confidence 7776 7888 66665432 44444 3 344444555544443 56666
Q ss_pred CeEEEEeCC
Q 027826 140 GAVLVCKNA 148 (218)
Q Consensus 140 GgvIV~DNv 148 (218)
||.+...=+
T Consensus 278 gg~~~le~~ 286 (328)
T KOG2904|consen 278 GGFEQLELV 286 (328)
T ss_pred CCeEEEEec
Confidence 888776544
No 126
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.87 E-value=0.00012 Score=67.32 Aligned_cols=95 Identities=16% Similarity=0.132 Sum_probs=64.0
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchhhcCCC-CCccEE
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEELMDGL-VDIDFL 118 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e~L~~l-~~fDfV 118 (218)
...+|||||||+|. .++.++...+ +++ ++.++.++++.+.++.... .. ++++.||+ .+ ++-- ++||+|
T Consensus 113 ~~~~VLDLGcGtG~--~~l~La~~~~--~~~-VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~--e~-lp~~~~sFDvV 182 (340)
T PLN02490 113 RNLKVVDVGGGTGF--TTLGIVKHVD--AKN-VTILDQSPHQLAKAKQKEP--LKECKIIEGDA--ED-LPFPTDYADRY 182 (340)
T ss_pred CCCEEEEEecCCcH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHhhh--ccCCeEEeccH--Hh-CCCCCCceeEE
Confidence 34699999999999 7777777653 356 6667888877666554322 22 78899999 65 3322 389999
Q ss_pred EEeCCc---cCcHHHHHHh-cCCCCCeEEEE
Q 027826 119 VVDSRR---KDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 119 FIDa~K---~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
+.-..- .+-...++.+ +++++||.+++
T Consensus 183 Is~~~L~~~~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred EEcChhhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 885421 1334567777 66666888754
No 127
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.86 E-value=0.00017 Score=68.89 Aligned_cols=122 Identities=13% Similarity=0.138 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHH--HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCc-eEEEE
Q 027826 25 HESGVAELVSAMA--AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS-PQVIT 100 (218)
Q Consensus 25 i~p~~g~fL~~L~--~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~-i~~i~ 100 (218)
+....+++...++ ......+||++.++-|- -|+.||..+.. .|. |+..|.++.+.... +++.+.|+. |.+..
T Consensus 95 vQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGg--KTt~la~~l~~-~g~-lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~ 170 (470)
T PRK11933 95 IQEASSMLPVAALFADDNAPQRVLDMAAAPGS--KTTQIAALMNN-QGA-IVANEYSASRVKVLHANISRCGVSNVALTH 170 (470)
T ss_pred EECHHHHHHHHHhccCCCCCCEEEEeCCCccH--HHHHHHHHcCC-CCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4445555555555 34566799999999997 77778887754 577 55567777776654 566799998 89999
Q ss_pred cCCCchhhcCCCC-CccEEEEeCCccCc-------------------------HHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 101 GEADDEELMDGLV-DIDFLVVDSRRKDF-------------------------ARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 101 GdA~~~e~L~~l~-~fDfVFIDa~K~~Y-------------------------~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
.|+ ...-+.+. .||.|++||--+.- .+.++.+ .++++||.||.-=-.+.-
T Consensus 171 ~D~--~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 171 FDG--RVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred Cch--hhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 999 66444444 79999999874311 2334444 566679998765544433
No 128
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.85 E-value=2.1e-05 Score=66.16 Aligned_cols=111 Identities=21% Similarity=0.408 Sum_probs=71.8
Q ss_pred HHHHHHHHHHh-cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCc--eEEEEcCCC
Q 027826 29 VAELVSAMAAG-WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS--PQVITGEAD 104 (218)
Q Consensus 29 ~g~fL~~L~~~-~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~--i~~i~GdA~ 104 (218)
-..+..+|-.. ..-.++|++=+|+|. +|+= |+.. |++.++.+|.+++..... +++...+++ ++++.+|+
T Consensus 29 realFniL~~~~~~g~~vLDLFaGSGa----lGlE-ALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~- 101 (183)
T PF03602_consen 29 REALFNILQPRNLEGARVLDLFAGSGA----LGLE-ALSR-GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDA- 101 (183)
T ss_dssp HHHHHHHHHCH-HTT-EEEETT-TTSH----HHHH-HHHT-T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSH-
T ss_pred HHHHHHHhcccccCCCeEEEcCCccCc----cHHH-HHhc-CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCH-
Confidence 34566666666 788899998777776 3432 2222 444477788988766654 455677777 89999999
Q ss_pred chhhcCCC----CCccEEEEeCC--ccC-cHHHHHHh---cCCCCCeEEEEeC
Q 027826 105 DEELMDGL----VDIDFLVVDSR--RKD-FARVLRLA---NLSSRGAVLVCKN 147 (218)
Q Consensus 105 ~~e~L~~l----~~fDfVFIDa~--K~~-Y~~~~~~~---~L~~~GgvIV~DN 147 (218)
...|+++ .+||+||+|-. +.. |.+.++.+ .++.++|+||+-.
T Consensus 102 -~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 102 -FKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp -HHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred -HHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 8888765 39999999975 233 47777776 4556699998754
No 129
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.84 E-value=0.00023 Score=65.44 Aligned_cols=108 Identities=17% Similarity=0.115 Sum_probs=74.4
Q ss_pred CCHHHHHH-HHHHHHhcC--CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEE
Q 027826 25 HESGVAEL-VSAMAAGWD--ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVI 99 (218)
Q Consensus 25 i~p~~g~f-L~~L~~~~~--ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i 99 (218)
+.+.+.+. +...+...+ ..+|||++||+|. -++.||..+ .+ |+.+|.+++..+.++.+ ...|++ ++++
T Consensus 178 ~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~--~sl~la~~~----~~-v~~vE~~~~av~~a~~n~~~~~~~~v~~~ 250 (353)
T TIGR02143 178 PNAAVNIKMLEWACEVTQGSKGDLLELYCGNGN--FSLALAQNF----RR-VLATEIAKPSVNAAQYNIAANNIDNVQII 250 (353)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCcEEEEeccccH--HHHHHHHhC----CE-EEEEECCHHHHHHHHHHHHHcCCCcEEEE
Confidence 33444433 444445443 4579999999999 666666653 35 77778888887776654 577887 9999
Q ss_pred EcCCCchhhcCC------C---C-------CccEEEEeCCcc-CcHHHHHHh-cCCCCCeEEE
Q 027826 100 TGEADDEELMDG------L---V-------DIDFLVVDSRRK-DFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 100 ~GdA~~~e~L~~------l---~-------~fDfVFIDa~K~-~Y~~~~~~~-~L~~~GgvIV 144 (218)
.+|+ .+.++. + . .||+||+|-... ..+..++.+ + + +++|.
T Consensus 251 ~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~--~-~~ivY 308 (353)
T TIGR02143 251 RMSA--EEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA--Y-ERILY 308 (353)
T ss_pred EcCH--HHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc--C-CcEEE
Confidence 9999 887763 1 1 389999998644 467777877 4 3 55554
No 130
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.84 E-value=0.00012 Score=68.04 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=74.3
Q ss_pred HHHHHHhcCC---CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchh
Q 027826 33 VSAMAAGWDA---RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEE 107 (218)
Q Consensus 33 L~~L~~~~~a---k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e 107 (218)
++.+.+..+. -+|||.-|++|. -+|=+|.-. .+.+.|+..|.+++..+..+.+ +..++. ++++.+|| ..
T Consensus 33 ~~~~~~~~~~~~~~~vLD~faGsG~--rgir~a~e~--~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da--~~ 106 (374)
T TIGR00308 33 IQAFDNLYGKECYINIADALSASGI--RAIRYAHEI--EGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDA--AN 106 (374)
T ss_pred HHHHHHhhCCcCCCEEEECCCchhH--HHHHHHhhC--CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhH--HH
Confidence 3334444444 389999999998 443333321 1334477788999877766544 456666 89999999 99
Q ss_pred hcCCCC-CccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEe
Q 027826 108 LMDGLV-DIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 108 ~L~~l~-~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
.|.... .||+|++|. -+...++++.+ ...++||++.+-
T Consensus 107 ~l~~~~~~fDvIdlDP-fGs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 107 VLRYRNRKFHVIDIDP-FGTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred HHHHhCCCCCEEEeCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence 988764 799999999 46556899887 555558877654
No 131
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=9.7e-05 Score=66.00 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHH--HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEE
Q 027826 25 HESGVAELVSAMA--AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVIT 100 (218)
Q Consensus 25 i~p~~g~fL~~L~--~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~ 100 (218)
-.|++..++..+. ....+++|||+|||+|. -+|++|...+ ..+ |+-.+.+++..+.|+.+ .+.|+. +.++.
T Consensus 92 Pr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~--iai~la~~~~--~~~-V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~ 166 (280)
T COG2890 92 PRPDTELLVEAALALLLQLDKRILDLGTGSGA--IAIALAKEGP--DAE-VIAVDISPDALALARENAERNGLVRVLVVQ 166 (280)
T ss_pred cCCchHHHHHHHHHhhhhcCCcEEEecCChHH--HHHHHHhhCc--CCe-EEEEECCHHHHHHHHHHHHHcCCccEEEEe
Confidence 3677888887743 22222279999999999 6666777655 357 55557888887777765 578865 66777
Q ss_pred cCCCchhhcCCCCCccEEEE
Q 027826 101 GEADDEELMDGLVDIDFLVV 120 (218)
Q Consensus 101 GdA~~~e~L~~l~~fDfVFI 120 (218)
+|. .+-++. +||+|.-
T Consensus 167 ~dl--f~~~~~--~fDlIVs 182 (280)
T COG2890 167 SDL--FEPLRG--KFDLIVS 182 (280)
T ss_pred eec--ccccCC--ceeEEEe
Confidence 777 665554 7888764
No 132
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.79 E-value=0.00035 Score=65.10 Aligned_cols=96 Identities=19% Similarity=0.230 Sum_probs=70.1
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCCCCccEEEE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGLVDIDFLVV 120 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l~~fDfVFI 120 (218)
.+|||++||+|. -+|-+|.... ..+ |+..|.+++..+.++.+ +..++. ++++.+|+ .+.+..-+.||+|++
T Consensus 59 ~~vLDl~aGsG~--~~l~~a~~~~--~~~-V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da--~~~l~~~~~fD~V~l 131 (382)
T PRK04338 59 ESVLDALSASGI--RGIRYALETG--VEK-VTLNDINPDAVELIKKNLELNGLENEKVFNKDA--NALLHEERKFDVVDI 131 (382)
T ss_pred CEEEECCCcccH--HHHHHHHHCC--CCE-EEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH--HHHHhhcCCCCEEEE
Confidence 589999999999 5555655432 135 67788999887776654 567787 88999999 888865337999999
Q ss_pred eCCccCcHHHHHHh-cCCCCCeEEEEe
Q 027826 121 DSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 121 Da~K~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
|-- +.=.++++.+ ...++||+|-+-
T Consensus 132 DP~-Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 132 DPF-GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence 974 4446788884 434448888764
No 133
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00037 Score=60.42 Aligned_cols=108 Identities=16% Similarity=0.199 Sum_probs=68.4
Q ss_pred HHHHHHHHH-hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hh--------CCCc---e
Q 027826 30 AELVSAMAA-GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GE--------AGFS---P 96 (218)
Q Consensus 30 g~fL~~L~~-~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~--------agl~---i 96 (218)
+..|..|-- +..--+.|++|+++||+.++ +|.-...+++. ..-+|.-++..+..+.+ .+ ..++ .
T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~--~~~mvg~~g~~-~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 70 ATALEYLDDHLQPGASFLDVGSGSGYLTAC--FARMVGATGGN-VHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHHHhhccCcceeecCCCccHHHHH--HHHHhcCCCcc-ccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 344444442 45556899999999995444 44333444443 34567778877776543 21 2233 7
Q ss_pred EEEEcCCCchhhcCCCCCccEEEEeCCccCcH-HHHHHhcCCCCCeEEE
Q 027826 97 QVITGEADDEELMDGLVDIDFLVVDSRRKDFA-RVLRLANLSSRGAVLV 144 (218)
Q Consensus 97 ~~i~GdA~~~e~L~~l~~fDfVFIDa~K~~Y~-~~~~~~~L~~~GgvIV 144 (218)
.+++||. +..-+.-.+||-|++=|+-.+-+ ++++ .|++.|+++|
T Consensus 147 ~ivvGDg--r~g~~e~a~YDaIhvGAaa~~~pq~l~d--qL~~gGrlli 191 (237)
T KOG1661|consen 147 SIVVGDG--RKGYAEQAPYDAIHVGAAASELPQELLD--QLKPGGRLLI 191 (237)
T ss_pred EEEeCCc--cccCCccCCcceEEEccCccccHHHHHH--hhccCCeEEE
Confidence 7899999 88777777999999998855443 3333 4556455554
No 134
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.77 E-value=0.00039 Score=58.85 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=61.3
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCC--ceEEEEcCCCchhhcCCCCCc
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGF--SPQVITGEADDEELMDGLVDI 115 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl--~i~~i~GdA~~~e~L~~l~~f 115 (218)
..+.++|||||||+|. .+..++.. +.+ ++-+|.++++...++. +...++ .++++++|+ .+. + ++|
T Consensus 53 ~~~~~~vLDiGcG~G~--~~~~la~~----~~~-v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~--~~~-~--~~f 120 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGL--LSIELAKR----GAI-VKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL--LSL-C--GEF 120 (219)
T ss_pred CCCCCEEEEEeCCCCH--HHHHHHHC----CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh--hhC-C--CCc
Confidence 4568999999999999 66666542 346 6677888888777654 445665 389999999 653 2 689
Q ss_pred cEEEE-eCCccCc-----HHHHHHh-cCCCCCeEEEE
Q 027826 116 DFLVV-DSRRKDF-----ARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 116 DfVFI-Da~K~~Y-----~~~~~~~-~L~~~GgvIV~ 145 (218)
|+|+. +.- ..+ ...+..+ ++.++|+++.+
T Consensus 121 D~ii~~~~l-~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 121 DIVVCMDVL-IHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred CEEEEhhHH-HhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 98875 332 112 2234444 45564555554
No 135
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.77 E-value=6.8e-05 Score=70.20 Aligned_cols=112 Identities=20% Similarity=0.275 Sum_probs=80.3
Q ss_pred HHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc---eEEEEcCCCchhhc
Q 027826 34 SAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS---PQVITGEADDEELM 109 (218)
Q Consensus 34 ~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~---i~~i~GdA~~~e~L 109 (218)
.++....+=|+||-+=|+||- -++. .|+. |++-||+++.+......++.+ .-.|+. ++++.+|+ .+.|
T Consensus 210 ~~l~~~~~GkrvLNlFsYTGg--fSv~--Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dv--f~~l 281 (393)
T COG1092 210 RALGELAAGKRVLNLFSYTGG--FSVH--AALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDV--FKWL 281 (393)
T ss_pred HHHhhhccCCeEEEecccCcH--HHHH--HHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhH--HHHH
Confidence 445555668999999888887 5543 3322 453488888888777777644 577876 89999999 9999
Q ss_pred CCCC----CccEEEEeCC------------ccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc
Q 027826 110 DGLV----DIDFLVVDSR------------RKDFARVLRLA-NLSSRGAVLVCKNAYSRND 153 (218)
Q Consensus 110 ~~l~----~fDfVFIDa~------------K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~ 153 (218)
+.+. +||+|++|-. ...|.+....+ ++++|||++++=+-..+-.
T Consensus 282 ~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~ 342 (393)
T COG1092 282 RKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS 342 (393)
T ss_pred HHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC
Confidence 8863 8999999943 23466666666 6666688888877765553
No 136
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.74 E-value=2.2e-05 Score=69.02 Aligned_cols=104 Identities=18% Similarity=0.225 Sum_probs=72.3
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCc---eEEEEcCCCchhhcCCCC--
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFS---PQVITGEADDEELMDGLV-- 113 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~---i~~i~GdA~~~e~L~~l~-- 113 (218)
.+-.+||+.=|+-|| |||.-+ . .|+..|.|+|.||...+.|+-+- .-++. |+++.||| .+++++++
T Consensus 133 ~~G~rVLDtC~GLGY--tAi~a~---~-rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~--~e~V~~~~D~ 204 (287)
T COG2521 133 KRGERVLDTCTGLGY--TAIEAL---E-RGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDA--YEVVKDFDDE 204 (287)
T ss_pred ccCCEeeeeccCccH--HHHHHH---H-cCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccH--HHHHhcCCcc
Confidence 345799998888889 885422 2 25644778899998877776542 33333 89999999 99999996
Q ss_pred CccEEEEeCCc-----cCcHH-HHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 114 DIDFLVVDSRR-----KDFAR-VLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 114 ~fDfVFIDa~K-----~~Y~~-~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
+||+|.-|-.. +.|-+ +++.+ +++++||=+ +.=|--+|
T Consensus 205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrl-FHYvG~Pg 249 (287)
T COG2521 205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRL-FHYVGNPG 249 (287)
T ss_pred ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcE-EEEeCCCC
Confidence 89999999532 55644 44445 666668875 55554444
No 137
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.74 E-value=0.0002 Score=62.87 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGE 102 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~Gd 102 (218)
.+++...+.+...+.....++|||||||+|+ -++.|+.. +.+ ++.+|.++.+...++..... .. +++++||
T Consensus 12 l~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~--lt~~L~~~----~~~-v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D 83 (258)
T PRK14896 12 LIDDRVVDRIVEYAEDTDGDPVLEIGPGKGA--LTDELAKR----AKK-VYAIELDPRLAEFLRDDEIA-AGNVEIIEGD 83 (258)
T ss_pred cCCHHHHHHHHHhcCCCCcCeEEEEeCccCH--HHHHHHHh----CCE-EEEEECCHHHHHHHHHHhcc-CCCEEEEEec
Confidence 4678888888777777778999999999999 66666654 346 77789999887776544322 34 9999999
Q ss_pred CCchhhcCCCCCccEEEE
Q 027826 103 ADDEELMDGLVDIDFLVV 120 (218)
Q Consensus 103 A~~~e~L~~l~~fDfVFI 120 (218)
+ .+. .++.||.|+-
T Consensus 84 ~--~~~--~~~~~d~Vv~ 97 (258)
T PRK14896 84 A--LKV--DLPEFNKVVS 97 (258)
T ss_pred c--ccC--CchhceEEEE
Confidence 9 663 1345777764
No 138
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.74 E-value=0.00034 Score=59.41 Aligned_cols=112 Identities=20% Similarity=0.351 Sum_probs=74.4
Q ss_pred HHHHHHHHHH-hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCc--eEEEEcCCC
Q 027826 29 VAELVSAMAA-GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS--PQVITGEAD 104 (218)
Q Consensus 29 ~g~fL~~L~~-~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~--i~~i~GdA~ 104 (218)
-..+..+|.. ...=.++|++ |+|- -++|+= |+.. |+..++-+|.+.+..... ++....++. .+++.+||
T Consensus 30 REalFNil~~~~i~g~~~LDl--FAGS--GaLGlE-AlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da- 102 (187)
T COG0742 30 REALFNILAPDEIEGARVLDL--FAGS--GALGLE-ALSR-GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDA- 102 (187)
T ss_pred HHHHHHhccccccCCCEEEEe--cCCc--cHhHHH-HHhC-CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecH-
Confidence 3455666666 3677899995 5554 445543 3322 455577778888765554 455678865 99999999
Q ss_pred chhhcCCCC---CccEEEEeCC--ccCcHHHHHHh-----cCCCCCeEEEEeCC
Q 027826 105 DEELMDGLV---DIDFLVVDSR--RKDFARVLRLA-----NLSSRGAVLVCKNA 148 (218)
Q Consensus 105 ~~e~L~~l~---~fDfVFIDa~--K~~Y~~~~~~~-----~L~~~GgvIV~DNv 148 (218)
...|+++. +||+||+|-. |+.+....... .+++++|+||+-.-
T Consensus 103 -~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 103 -LRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred -HHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 88888875 4999999975 44553333333 44566899887653
No 139
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.73 E-value=0.00031 Score=63.10 Aligned_cols=117 Identities=12% Similarity=0.142 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHH---HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEE
Q 027826 25 HESGVAELVSAMA---AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQV 98 (218)
Q Consensus 25 i~p~~g~fL~~L~---~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~ 98 (218)
+++++-.=+..++ .+..=.++||||||-|- .++-+|+-. |.+ |+-+..++++...++ .+++.|++ |++
T Consensus 53 L~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~--l~~~aA~~y---~v~-V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v 126 (283)
T COG2230 53 LEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGG--LAIYAAEEY---GVT-VVGVTLSEEQLAYAEKRIAARGLEDNVEV 126 (283)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhH--HHHHHHHHc---CCE-EEEeeCCHHHHHHHHHHHHHcCCCcccEE
Confidence 3444444344444 45566799999999998 777777643 567 666678887776665 47899999 888
Q ss_pred EEcCCCchhhcCCCCCccEEE-Ee----CCccCcHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 99 ITGEADDEELMDGLVDIDFLV-VD----SRRKDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 99 i~GdA~~~e~L~~l~~fDfVF-ID----a~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
+.-|= .++-+ +||=|. |. --+++|+.||+.+ .++++||.++..-+...-
T Consensus 127 ~l~d~--rd~~e---~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 127 RLQDY--RDFEE---PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred Eeccc--ccccc---ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 87766 44333 366443 22 2368899999999 777779999887776433
No 140
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=97.69 E-value=9.5e-05 Score=65.27 Aligned_cols=122 Identities=12% Similarity=0.061 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHhc----CCCeEEEeCcCcchHHHHHHHHHhc---CCCCcEEEE--EEcCCcc-------------
Q 027826 24 SHESGVAELVSAMAAGW----DARLIVETWSHGGATATSVGLAVAS---RHTGGRHVC--LVPDERS------------- 81 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~----~ak~ILEiGt~~GyiGsaiglA~a~---~~~~G~vit--t~e~~~~------------- 81 (218)
.+++.--..|+.+++.. =|-.|+|.|++-|- |++-|+..+ ..++-++.. |.+.-|+
T Consensus 53 m~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGg--s~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~ 130 (248)
T PF05711_consen 53 MIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGG--SSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWE 130 (248)
T ss_dssp SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSH--HHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCT
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCH--HHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhh
Confidence 35666666666666644 57789999999997 776544322 222323321 2221110
Q ss_pred -----------HHHHHHHHhhCCCc---eEEEEcCCCchhhcCCCC--CccEEEEeCCccCcHHHHHHh-----cCCCCC
Q 027826 82 -----------RSEYVHALGEAGFS---PQVITGEADDEELMDGLV--DIDFLVVDSRRKDFARVLRLA-----NLSSRG 140 (218)
Q Consensus 82 -----------~~~~a~~~~~agl~---i~~i~GdA~~~e~L~~l~--~fDfVFIDa~K~~Y~~~~~~~-----~L~~~G 140 (218)
..+..+++.+.|+. ++++.|.- .++||+.+ ++-|+.||+| .|....+.+ +|.+ |
T Consensus 131 ~~~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F--~dTLp~~p~~~IAll~lD~D--lYesT~~aLe~lyprl~~-G 205 (248)
T PF05711_consen 131 FHEYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWF--PDTLPDAPIERIALLHLDCD--LYESTKDALEFLYPRLSP-G 205 (248)
T ss_dssp CCGCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-H--HHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEE-E
T ss_pred hhhcccccccCHHHHHHHHHHcCCCcccEEEECCcc--hhhhccCCCccEEEEEEecc--chHHHHHHHHHHHhhcCC-C
Confidence 01112233467763 99999999 99999875 8999999998 777765554 4545 9
Q ss_pred eEEEEeCCCCCC
Q 027826 141 AVLVCKNAYSRN 152 (218)
Q Consensus 141 gvIV~DNvl~~G 152 (218)
|+||+|+-.+.|
T Consensus 206 GiIi~DDY~~~g 217 (248)
T PF05711_consen 206 GIIIFDDYGHPG 217 (248)
T ss_dssp EEEEESSTTTHH
T ss_pred eEEEEeCCCChH
Confidence 999999977755
No 141
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.68 E-value=0.00025 Score=59.85 Aligned_cols=96 Identities=25% Similarity=0.354 Sum_probs=70.8
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCC-CCccEEEE
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGL-VDIDFLVV 120 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l-~~fDfVFI 120 (218)
+++.||||.|.-|-- ||.+.+ +-+ ++-+|....+...-+.. .+.|++ ++++++++ .+ +.. ..||+|.-
T Consensus 51 ~~lDiGSGaGfPGip--LaI~~p--~~~-~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~--E~--~~~~~~fd~v~a 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIP--LAIARP--DLQ-VTLVESVGKKVAFLKEVVRELGLSNVEVINGRA--EE--PEYRESFDVVTA 121 (184)
T ss_dssp EEEEETSTTTTTHHH--HHHH-T--TSE-EEEEESSHHHHHHHHHHHHHHT-SSEEEEES-H--HH--TTTTT-EEEEEE
T ss_pred eEEecCCCCCChhHH--HHHhCC--CCc-EEEEeCCchHHHHHHHHHHHhCCCCEEEEEeee--cc--cccCCCccEEEe
Confidence 799999999995444 566555 457 66778877777666655 589999 99999999 77 333 39999999
Q ss_pred eCCccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc
Q 027826 121 DSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRND 153 (218)
Q Consensus 121 Da~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~ 153 (218)
=|- .....+++++ +++++||.+++ +.|.
T Consensus 122 RAv-~~l~~l~~~~~~~l~~~G~~l~----~KG~ 150 (184)
T PF02527_consen 122 RAV-APLDKLLELARPLLKPGGRLLA----YKGP 150 (184)
T ss_dssp ESS-SSHHHHHHHHGGGEEEEEEEEE----EESS
T ss_pred ehh-cCHHHHHHHHHHhcCCCCEEEE----EcCC
Confidence 997 6788999998 76666998864 4663
No 142
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00018 Score=65.10 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEcCC
Q 027826 27 SGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGEA 103 (218)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~GdA 103 (218)
.-.-++|..+.+ +.++||.+|||+|. -+|+.++ . |.+-+.-.+.||-..++++.+ ...++. ++.-..+.
T Consensus 150 ~lcL~~Le~~~~--~g~~vlDvGcGSGI--LaIAa~k--L--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~ 221 (300)
T COG2264 150 SLCLEALEKLLK--KGKTVLDVGCGSGI--LAIAAAK--L--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLL 221 (300)
T ss_pred HHHHHHHHHhhc--CCCEEEEecCChhH--HHHHHHH--c--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccc
Confidence 334466666666 99999999999998 4443333 2 333355567888777777766 467776 55555555
Q ss_pred CchhhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 104 DDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 104 ~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
.+.... .+||+|+---=-+--..+.+.+ .+++|||.+|.-=++
T Consensus 222 --~~~~~~-~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 222 --LEVPEN-GPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred --hhhccc-CcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 443332 4899999765333333444444 555569999876655
No 143
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.67 E-value=9.2e-05 Score=65.02 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHh---cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEE
Q 027826 25 HESGVAELVSAMAAG---WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVIT 100 (218)
Q Consensus 25 i~p~~g~fL~~L~~~---~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~ 100 (218)
+.|-.-.+++.-++. ..-++||.||||.|. -+..||+. |.. |+-++..++..+.|+.. .+.|+.|+...
T Consensus 40 ~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~--Lse~mAr~----Ga~-VtgiD~se~~I~~Ak~ha~e~gv~i~y~~ 112 (243)
T COG2227 40 INPLRLDYIREVARLRFDLPGLRVLDVGCGGGI--LSEPLARL----GAS-VTGIDASEKPIEVAKLHALESGVNIDYRQ 112 (243)
T ss_pred eccchhhhhhhhhhcccCCCCCeEEEecCCccH--hhHHHHHC----CCe-eEEecCChHHHHHHHHhhhhccccccchh
Confidence 344444555555555 677899999999998 55556653 455 77788888888888765 48998899999
Q ss_pred cCCCchhhcCCCCCccEEEEeCCccCcHH---HHHHh-cCCCCCeEEEEeCCC
Q 027826 101 GEADDEELMDGLVDIDFLVVDSRRKDFAR---VLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 101 GdA~~~e~L~~l~~fDfVFIDa~K~~Y~~---~~~~~-~L~~~GgvIV~DNvl 149 (218)
..+ .+....-++||+|..=---++|++ ++..| ++++|||+++.--+-
T Consensus 113 ~~~--edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 113 ATV--EDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred hhH--HHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 888 776665579999986544444432 55556 777779998776654
No 144
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.65 E-value=0.00027 Score=61.37 Aligned_cols=128 Identities=13% Similarity=0.168 Sum_probs=78.5
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcC-CCCcEEEEEEcCCccHHHHH-HHHhhCCC-ceE-EEEcCCCchhhcCCCC--C
Q 027826 41 DARLIVETWSHGGATATSVGLAVASR-HTGGRHVCLVPDERSRSEYV-HALGEAGF-SPQ-VITGEADDEELMDGLV--D 114 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~-~~~G~vitt~e~~~~~~~~a-~~~~~agl-~i~-~i~GdA~~~e~L~~l~--~ 114 (218)
+--.+||||||+|- - -.-.+ .++-+ ||.++-++.+.+.+ +.+++.-. +++ ++++++ |-|++|. +
T Consensus 76 ~K~~vLEvgcGtG~--N----fkfy~~~p~~s-vt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~g---e~l~~l~d~s 145 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGA--N----FKFYPWKPINS-VTCLDPNEKMEEIADKSAAEKKPLQVERFVVADG---ENLPQLADGS 145 (252)
T ss_pred CccceEEecccCCC--C----cccccCCCCce-EEEeCCcHHHHHHHHHHHhhccCcceEEEEeech---hcCcccccCC
Confidence 33457999999994 1 11112 13446 67778888887776 45554433 355 899988 6688885 8
Q ss_pred ccEE---EEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCCCCccchh-hhhhhccCCCCCeEEEEeecCCcEEEEE
Q 027826 115 IDFL---VVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRNDSTFR-WKNVLDGRSRRLVRSVYLPVGKGLDIAH 185 (218)
Q Consensus 115 fDfV---FIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~~~~~-~~~~~~~~~~~~~~s~~lPiGDGl~v~r 185 (218)
||-| |+=|.-++-.+.++.+ ++++|||.|++ +=|+...+. |++.+.. .++..-.-++||-.++|
T Consensus 146 ~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif---iEHva~~y~~~n~i~q~----v~ep~~~~~~dGC~ltr 214 (252)
T KOG4300|consen 146 YDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF---IEHVAGEYGFWNRILQQ----VAEPLWHLESDGCVLTR 214 (252)
T ss_pred eeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE---EecccccchHHHHHHHH----HhchhhheeccceEEeh
Confidence 9977 4556667777888887 77777888865 334543333 3333221 12222333678866665
No 145
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.62 E-value=0.00018 Score=59.81 Aligned_cols=73 Identities=18% Similarity=0.257 Sum_probs=52.5
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCc--eEEEEcCCCchhhcCCCC--C-cc
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFS--PQVITGEADDEELMDGLV--D-ID 116 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~--i~~i~GdA~~~e~L~~l~--~-fD 116 (218)
+.|+++-||.|- -+|.+|+.. -+ |+.+|.++.+...++.+. -+|++ |++++||+ .+.++++. . +|
T Consensus 1 ~~vlD~fcG~GG--NtIqFA~~~----~~-Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~--~~~~~~~~~~~~~D 71 (163)
T PF09445_consen 1 TTVLDAFCGVGG--NTIQFARTF----DR-VIAIDIDPERLECAKHNAEVYGVADNIDFICGDF--FELLKRLKSNKIFD 71 (163)
T ss_dssp SEEEETT-TTSH--HHHHHHHTT-----E-EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-H--HHHGGGB------S
T ss_pred CEEEEeccCcCH--HHHHHHHhC----Ce-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCH--HHHHhhcccccccc
Confidence 468898888886 999999862 35 666789999999988875 79987 99999999 99998875 3 89
Q ss_pred EEEEeCCc
Q 027826 117 FLVVDSRR 124 (218)
Q Consensus 117 fVFIDa~K 124 (218)
+||+|-.-
T Consensus 72 ~vFlSPPW 79 (163)
T PF09445_consen 72 VVFLSPPW 79 (163)
T ss_dssp EEEE---B
T ss_pred EEEECCCC
Confidence 99999743
No 146
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.57 E-value=0.00021 Score=60.57 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=62.0
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCc-eEEEEcCCCchhhcCCC---CCccEE
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAGFS-PQVITGEADDEELMDGL---VDIDFL 118 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~-i~~i~GdA~~~e~L~~l---~~fDfV 118 (218)
.+||||||.|- ..+.+|...+ +-..|- +|....... +.+...+.++. +.++.+|| .+.|+.+ .++|-|
T Consensus 20 l~lEIG~G~G~--~l~~~A~~~P--d~n~iG-iE~~~~~v~~a~~~~~~~~l~Nv~~~~~da--~~~l~~~~~~~~v~~i 92 (195)
T PF02390_consen 20 LILEIGCGKGE--FLIELAKRNP--DINFIG-IEIRKKRVAKALRKAEKRGLKNVRFLRGDA--RELLRRLFPPGSVDRI 92 (195)
T ss_dssp EEEEET-TTSH--HHHHHHHHST--TSEEEE-EES-HHHHHHHHHHHHHHTTSSEEEEES-C--TTHHHHHSTTTSEEEE
T ss_pred eEEEecCCCCH--HHHHHHHHCC--CCCEEE-EecchHHHHHHHHHHHhhcccceEEEEccH--HHHHhhcccCCchheE
Confidence 89999999998 8888888765 345444 566555443 33455677998 99999999 8877654 278877
Q ss_pred EE---eCC-cc-------CcHHHHHHh-cCCCCCeEE
Q 027826 119 VV---DSR-RK-------DFARVLRLA-NLSSRGAVL 143 (218)
Q Consensus 119 FI---Da~-K~-------~Y~~~~~~~-~L~~~GgvI 143 (218)
|| |-| |. -.+++++.+ .++++||.|
T Consensus 93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l 129 (195)
T PF02390_consen 93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGEL 129 (195)
T ss_dssp EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEE
T ss_pred EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEE
Confidence 77 554 22 357788887 555558876
No 147
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.55 E-value=0.00036 Score=54.88 Aligned_cols=106 Identities=15% Similarity=0.063 Sum_probs=66.0
Q ss_pred HHHHHHHHHHH-hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCch
Q 027826 28 GVAELVSAMAA-GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDE 106 (218)
Q Consensus 28 ~~g~fL~~L~~-~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~ 106 (218)
...+++..+.. ....++||||||+.|. .+..|+.. +-+ ++-++.++..... ..+....-++ .
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~--~~~~l~~~----~~~-~~g~D~~~~~~~~--------~~~~~~~~~~--~ 70 (161)
T PF13489_consen 8 AYADLLERLLPRLKPGKRVLDIGCGTGS--FLRALAKR----GFE-VTGVDISPQMIEK--------RNVVFDNFDA--Q 70 (161)
T ss_dssp CHHHHHHHHHTCTTTTSEEEEESSTTSH--HHHHHHHT----TSE-EEEEESSHHHHHH--------TTSEEEEEEC--H
T ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCCH--HHHHHHHh----CCE-EEEEECCHHHHhh--------hhhhhhhhhh--h
Confidence 34566776664 6889999999999998 66556442 336 6667777755444 1122222222 2
Q ss_pred hhcCCCCCccEEEEeCCccCcH---HHHHHh-cCCCCCeEEEEeCCCC
Q 027826 107 ELMDGLVDIDFLVVDSRRKDFA---RVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 107 e~L~~l~~fDfVFIDa~K~~Y~---~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
+....=++||+|+.=.--+.-+ .+++.+ .+++|||.+++.....
T Consensus 71 ~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 71 DPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp THHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 2122223899999886655443 444455 6666699999888754
No 148
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.53 E-value=0.00063 Score=60.15 Aligned_cols=90 Identities=12% Similarity=0.084 Sum_probs=59.9
Q ss_pred hhHHHHHHhhhccCC-------CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCcc
Q 027826 9 TASKAYIDTVKSCEL-------SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERS 81 (218)
Q Consensus 9 ~a~~ayl~~l~~~~~-------~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~ 81 (218)
+.+++++..-..... .+++...+.+...+......+|||||||+|. .+..|+.. +.+ ++.+|.+++
T Consensus 3 ~~~~~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~--lt~~L~~~----~~~-v~avE~d~~ 75 (272)
T PRK00274 3 PRTRELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGA--LTEPLLER----AAK-VTAVEIDRD 75 (272)
T ss_pred hhHHHHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccH--HHHHHHHh----CCc-EEEEECCHH
Confidence 445666655433211 4677776666655666677899999999999 66666664 236 667788888
Q ss_pred HHHHHHHHhhCCCceEEEEcCCCchhh
Q 027826 82 RSEYVHALGEAGFSPQVITGEADDEEL 108 (218)
Q Consensus 82 ~~~~a~~~~~agl~i~~i~GdA~~~e~ 108 (218)
+.+.++..... -.+++++||+ .+.
T Consensus 76 ~~~~~~~~~~~-~~v~~i~~D~--~~~ 99 (272)
T PRK00274 76 LAPILAETFAE-DNLTIIEGDA--LKV 99 (272)
T ss_pred HHHHHHHhhcc-CceEEEEChh--hcC
Confidence 87766543222 2389999999 653
No 149
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.51 E-value=0.0009 Score=60.84 Aligned_cols=107 Identities=14% Similarity=0.048 Sum_probs=68.6
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCc-eEEEEcCCCchhhcCCCCCcc
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFS-PQVITGEADDEELMDGLVDID 116 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~-i~~i~GdA~~~e~L~~l~~fD 116 (218)
-..=|+||+|||+.|| -+.-|+.+ |.+.|.-++-.+......+.++ -.|.. ........ .|-|+.++.||
T Consensus 113 ~L~gk~VLDIGC~nGY--~~frM~~~----GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplg--vE~Lp~~~~FD 184 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGY--YSFRMLGR----GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLG--VEDLPNLGAFD 184 (315)
T ss_pred CcCCCEEEEecCCCcH--HHHHHhhc----CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcc--hhhccccCCcC
Confidence 4566899999999999 55445543 4554554555443322223333 34544 33455667 88888877999
Q ss_pred EEEEeCCc---cCcHHHHHHh-cCCCCCeEEEEeCCCCCCc
Q 027826 117 FLVVDSRR---KDFARVLRLA-NLSSRGAVLVCKNAYSRND 153 (218)
Q Consensus 117 fVFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~ 153 (218)
.||.=+-- .+-.+.+..+ ..+++||-+|.+-....|+
T Consensus 185 tVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 185 TVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD 225 (315)
T ss_pred EEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence 99987652 2334455555 3344599999999988886
No 150
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.49 E-value=0.00057 Score=59.18 Aligned_cols=95 Identities=20% Similarity=0.298 Sum_probs=72.3
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCCCCccEEE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGLVDIDFLV 119 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l~~fDfVF 119 (218)
+++++.||||.|. =+|=||.+.+ +.+ +|.+|....+...-+.. .+.|++ +++++|.| .+.=++.+-||+|-
T Consensus 68 ~~~~~DIGSGaGf--PGipLAI~~p--~~~-vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~Ra--E~~~~~~~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGF--PGIPLAIAFP--DLK-VTLLESLGKKIAFLREVKKELGLENVEIVHGRA--EEFGQEKKQYDVVT 140 (215)
T ss_pred CCEEEEeCCCCCC--chhhHHHhcc--CCc-EEEEccCchHHHHHHHHHHHhCCCCeEEehhhH--hhcccccccCcEEE
Confidence 7999999999999 4444665444 577 77788888777776665 589999 99999999 55443321299999
Q ss_pred EeCCccCcHHHHHHh-cCCCCCeEEE
Q 027826 120 VDSRRKDFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 120 IDa~K~~Y~~~~~~~-~L~~~GgvIV 144 (218)
.=|- ..-..+++++ +++++||.++
T Consensus 141 sRAv-a~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 141 SRAV-ASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred eehc-cchHHHHHHHHHhcccCCcch
Confidence 9996 7778899999 7776677664
No 151
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.49 E-value=9.3e-05 Score=54.65 Aligned_cols=91 Identities=22% Similarity=0.149 Sum_probs=48.1
Q ss_pred EEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHH-HHHHhhCCCc-eEEEEcCCCchhhcCCC--CCccEEEEe
Q 027826 46 VETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY-VHALGEAGFS-PQVITGEADDEELMDGL--VDIDFLVVD 121 (218)
Q Consensus 46 LEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~-a~~~~~agl~-i~~i~GdA~~~e~L~~l--~~fDfVFID 121 (218)
|||||++|. .+..++...+ +.+ ++-++.++.+.+. ++.+.+.+.. .+.+..+. .+..... ++||+|+.=
T Consensus 1 LdiGcG~G~--~~~~l~~~~~--~~~-~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGR--LLRALLEELP--DAR-YTGVDISPSMLERARERLAELGNDNFERLRFDV--LDLFDYDPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS---TTTTHHHHC---EEE-EEEEESSSSTTSTTCCCHHHCT---EEEEE--S--SS---CCC----SEEEEE
T ss_pred CEeCccChH--HHHHHHHhCC--CCE-EEEEECCHHHHHHHHHHhhhcCCcceeEEEeec--CChhhcccccccceehhh
Confidence 799999999 6656776653 567 5566777877643 4456655544 55555555 4444433 389999875
Q ss_pred CCc---cCcHHHHHHh-cCCCCCeEE
Q 027826 122 SRR---KDFARVLRLA-NLSSRGAVL 143 (218)
Q Consensus 122 a~K---~~Y~~~~~~~-~L~~~GgvI 143 (218)
.-- ++-..+++.+ ++++|||++
T Consensus 74 ~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 432 3344566666 677779985
No 152
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00069 Score=60.80 Aligned_cols=91 Identities=18% Similarity=0.157 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCc--eEEEEcC
Q 027826 26 ESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS--PQVITGE 102 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~--i~~i~Gd 102 (218)
+|+.+..+. +.....-..|+|-|||+|- -+.++|+|..+ -|+ +.|.|..+.+++.| +.|++.|+. +++.+-|
T Consensus 91 t~Dia~I~~-~L~i~PGsvV~EsGTGSGS--lShaiaraV~p-tGh-l~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrD 165 (314)
T KOG2915|consen 91 TPDIAMILS-MLEIRPGSVVLESGTGSGS--LSHAIARAVAP-TGH-LYTFEFHETRAEKALEEFREHGIGDNVTVTHRD 165 (314)
T ss_pred cccHHHHHH-HhcCCCCCEEEecCCCcch--HHHHHHHhhCc-Ccc-eEEEEecHHHHHHHHHHHHHhCCCcceEEEEee
Confidence 565555444 4566666799999999998 67778998876 589 66677877776654 678899998 8888777
Q ss_pred CCchhhcCCC-C-CccEEEEeCC
Q 027826 103 ADDEELMDGL-V-DIDFLVVDSR 123 (218)
Q Consensus 103 A~~~e~L~~l-~-~fDfVFIDa~ 123 (218)
. ...=-.. . .+|-||+|--
T Consensus 166 V--c~~GF~~ks~~aDaVFLDlP 186 (314)
T KOG2915|consen 166 V--CGSGFLIKSLKADAVFLDLP 186 (314)
T ss_pred c--ccCCccccccccceEEEcCC
Confidence 6 3311111 2 8999999965
No 153
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.44 E-value=0.0005 Score=61.90 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCC-c-eEEEE
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGF-S-PQVIT 100 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl-~-i~~i~ 100 (218)
.+++...+.+-..+......+|||||||+|. -+..++.. +++ ++.+|.++.+...++. +...+. . ++++.
T Consensus 19 L~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~--LT~~Ll~~----~~~-V~avEiD~~li~~l~~~~~~~~~~~~v~ii~ 91 (294)
T PTZ00338 19 LKNPLVLDKIVEKAAIKPTDTVLEIGPGTGN--LTEKLLQL----AKK-VIAIEIDPRMVAELKKRFQNSPLASKLEVIE 91 (294)
T ss_pred cCCHHHHHHHHHhcCCCCcCEEEEecCchHH--HHHHHHHh----CCc-EEEEECCHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 4567666666666666666899999999999 45445543 346 6778999988777654 455553 3 99999
Q ss_pred cCCCchhhcCCCCCccEEEEeCCccCc---HHHHHHh
Q 027826 101 GEADDEELMDGLVDIDFLVVDSRRKDF---ARVLRLA 134 (218)
Q Consensus 101 GdA~~~e~L~~l~~fDfVFIDa~K~~Y---~~~~~~~ 134 (218)
||+ ++. .+.+||.|+.+- .-| +-.++++
T Consensus 92 ~Da--l~~--~~~~~d~VvaNl--PY~Istpil~~ll 122 (294)
T PTZ00338 92 GDA--LKT--EFPYFDVCVANV--PYQISSPLVFKLL 122 (294)
T ss_pred CCH--hhh--cccccCEEEecC--CcccCcHHHHHHH
Confidence 999 763 245789887543 233 4455555
No 154
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.40 E-value=0.0015 Score=55.71 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCceEEEEcCCCc
Q 027826 27 SGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFSPQVITGEADD 105 (218)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~i~~i~GdA~~ 105 (218)
|.-.+++.+ +...++.++|.+|||.|= -++.||+. |--|+.++.++...+..+.++ +.+++|+....|-
T Consensus 17 ~~hs~v~~a-~~~~~~g~~LDlgcG~GR--NalyLA~~-----G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl-- 86 (192)
T PF03848_consen 17 PTHSEVLEA-VPLLKPGKALDLGCGEGR--NALYLASQ-----GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADL-- 86 (192)
T ss_dssp ---HHHHHH-CTTS-SSEEEEES-TTSH--HHHHHHHT-----T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BG--
T ss_pred CCcHHHHHH-HhhcCCCcEEEcCCCCcH--HHHHHHHC-----CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecc--
Confidence 333444443 567789999999999998 88888873 555888889887665555554 7888888888886
Q ss_pred hhhcCCCCCccEEEEe-----CCccCcHHHHHHh-cCCCCCeEEEE
Q 027826 106 EELMDGLVDIDFLVVD-----SRRKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 106 ~e~L~~l~~fDfVFID-----a~K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
.+.-.. ..||+|+-. -.++.-+..++.+ .-.++||+.+.
T Consensus 87 ~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 87 NDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp CCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred hhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 442211 389999642 3345666777777 33444999876
No 155
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.39 E-value=0.00021 Score=64.34 Aligned_cols=104 Identities=22% Similarity=0.422 Sum_probs=65.1
Q ss_pred HHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc---eEEEEcCCCchhhcCC
Q 027826 36 MAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS---PQVITGEADDEELMDG 111 (218)
Q Consensus 36 L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~---i~~i~GdA~~~e~L~~ 111 (218)
+.+..+-++||-+=|++|- -+ ++.+.. |++.|++++.+....+.++ ++.-.|+. ++++.+|+ .+.|.+
T Consensus 118 v~~~~~gkrvLnlFsYTGg--fs--v~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dv--f~~l~~ 189 (286)
T PF10672_consen 118 VRKYAKGKRVLNLFSYTGG--FS--VAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDV--FKFLKR 189 (286)
T ss_dssp HHHHCTTCEEEEET-TTTH--HH--HHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-H--HHHHHH
T ss_pred HHHHcCCCceEEecCCCCH--HH--HHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCH--HHHHHH
Confidence 3444567899998888875 33 333322 3434777788777666665 44555654 89999999 998876
Q ss_pred C---CCccEEEEeCC---------ccCcHHHHHHh-cCCCCCeEEE-EeC
Q 027826 112 L---VDIDFLVVDSR---------RKDFARVLRLA-NLSSRGAVLV-CKN 147 (218)
Q Consensus 112 l---~~fDfVFIDa~---------K~~Y~~~~~~~-~L~~~GgvIV-~DN 147 (218)
+ .+||+|++|-. ...|.+.+..+ +++++||+++ +-|
T Consensus 190 ~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 190 LKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred HhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 5 38999999953 23677777777 6776688765 455
No 156
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.38 E-value=0.0032 Score=52.05 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=54.2
Q ss_pred HHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCC--Cc--eEE---EEcCCCch--
Q 027826 37 AAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAG--FS--PQV---ITGEADDE-- 106 (218)
Q Consensus 37 ~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~ag--l~--i~~---i~GdA~~~-- 106 (218)
....+.++|||+|||+|. .+|.+|... ...+++.|+ .++ .....+ +....+ .. +++ -.|+. .
T Consensus 41 ~~~~~~~~VLELGaG~Gl--~gi~~a~~~--~~~~Vv~TD-~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~--~~~ 112 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGL--PGIAAAKLF--GAARVVLTD-YNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDE--LDS 112 (173)
T ss_dssp GGGTTTSEEEETT-TTSH--HHHHHHHT---T-SEEEEEE--S--HHHHHHHHHHTT--------EEEE--TTS---HHH
T ss_pred hhhcCCceEEEECCccch--hHHHHHhcc--CCceEEEec-cch-hhHHHHHHHHhccccccccccCcEEEecCc--ccc
Confidence 346788999999999999 666555542 245766664 555 444444 433322 22 544 34554 3
Q ss_pred hhcCCCCCccEEEE-eC--CccCcHHHHHHh--cCCCCCeEEEEeCC
Q 027826 107 ELMDGLVDIDFLVV-DS--RRKDFARVLRLA--NLSSRGAVLVCKNA 148 (218)
Q Consensus 107 e~L~~l~~fDfVFI-Da--~K~~Y~~~~~~~--~L~~~GgvIV~DNv 148 (218)
+.++ -.+||+|+- |. +.+.++.+++.+ .+.+.+.++++.-.
T Consensus 113 ~~~~-~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 113 DLLE-PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp HHHS--SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred cccc-cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 2222 137888764 32 246777777777 44465667776644
No 157
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.36 E-value=0.00066 Score=59.28 Aligned_cols=105 Identities=14% Similarity=0.053 Sum_probs=74.0
Q ss_pred HHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCC
Q 027826 33 VSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGL 112 (218)
Q Consensus 33 L~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l 112 (218)
|-..+-...+++|+.+|||.|- ||=-|+.--+ +.. |+-++.++++.+.|+ +.....+|..||. .+.=+.
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGn--sTelL~~RwP--~A~-i~GiDsS~~Mla~Aa---~rlp~~~f~~aDl--~~w~p~- 90 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGN--STELLARRWP--DAV-ITGIDSSPAMLAKAA---QRLPDATFEEADL--RTWKPE- 90 (257)
T ss_pred HHhhCCccccceeeecCCCCCH--HHHHHHHhCC--CCe-EeeccCCHHHHHHHH---HhCCCCceecccH--hhcCCC-
Confidence 4445667899999999999997 6655776544 456 888899998876653 2233368888888 654442
Q ss_pred CCccEEEEeCCc---cCcHHHHHHh--cCCCCCeEEEE---eCCC
Q 027826 113 VDIDFLVVDSRR---KDFARVLRLA--NLSSRGAVLVC---KNAY 149 (218)
Q Consensus 113 ~~fDfVFIDa~K---~~Y~~~~~~~--~L~~~GgvIV~---DNvl 149 (218)
.+.|++|-.|.- .++++.|..+ .|.| ||++.+ ||..
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~P-gg~LAVQmPdN~d 134 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAP-GGVLAVQMPDNLD 134 (257)
T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhhCC-CceEEEECCCccC
Confidence 289999999864 4556666665 5555 999876 5654
No 158
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.36 E-value=0.00073 Score=60.59 Aligned_cols=100 Identities=21% Similarity=0.184 Sum_probs=62.3
Q ss_pred CCCeEEEeCcC-cchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-h-hCCCc--eEEEEcCCCchhhcCCCCCc
Q 027826 41 DARLIVETWSH-GGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-G-EAGFS--PQVITGEADDEELMDGLVDI 115 (218)
Q Consensus 41 ~ak~ILEiGt~-~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~-~agl~--i~~i~GdA~~~e~L~~l~~f 115 (218)
.|++|+=||+| .-. |+|.||..... +.. ++.++.+++..+.++.+ . ..|++ ++|+++|+ .+.-..+..|
T Consensus 120 ~p~rVaFIGSGPLPl--T~i~la~~~~~-~~~-v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~--~~~~~dl~~~ 193 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPL--TSIVLAKQHGP-GAR-VHNIDIDPEANELARRLVASDLGLSKRMSFITADV--LDVTYDLKEY 193 (276)
T ss_dssp ---EEEEE---SS-H--HHHHHH--HTT---E-EEEEESSHHHHHHHHHHHH---HH-SSEEEEES-G--GGG-GG----
T ss_pred ccceEEEEcCCCcch--HHHHHHHHhCC-CCe-EEEEeCCHHHHHHHHHHHhhcccccCCeEEEecch--hccccccccC
Confidence 46799999997 455 99999975432 345 66778999888877665 4 46766 99999999 8776678899
Q ss_pred cEEEEeCCcc----CcHHHHHHh-cCCCCCeEEEEe
Q 027826 116 DFLVVDSRRK----DFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 116 DfVFIDa~K~----~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
|.||+=|--+ .=.+.|+.+ +..++|++|+.=
T Consensus 194 DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 194 DVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred CEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 9999998766 888899998 555559999876
No 159
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.31 E-value=0.0011 Score=58.47 Aligned_cols=104 Identities=13% Similarity=0.008 Sum_probs=61.2
Q ss_pred CCCeEEEeCcCcchHHHHHH--HHHhcCC---CCcEEEEEEcCCccHHHHHHHHh--------------------hC---
Q 027826 41 DARLIVETWSHGGATATSVG--LAVASRH---TGGRHVCLVPDERSRSEYVHALG--------------------EA--- 92 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaig--lA~a~~~---~~G~vitt~e~~~~~~~~a~~~~--------------------~a--- 92 (218)
++-+|+++|||+|--..+|+ |+...+. .+.+ |+-.+.++++.+.|+.-. ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~-I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVK-ILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeE-EEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 45699999999996333444 3443332 2356 555578887766554310 00
Q ss_pred ----CCc--eEEEEcCCCchhhcCCCCCccEEEEeCC-----ccCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 93 ----GFS--PQVITGEADDEELMDGLVDIDFLVVDSR-----RKDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 93 ----gl~--i~~i~GdA~~~e~L~~l~~fDfVFIDa~-----K~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
.+. |++..+|. .+.-+...+||+||.-.- .+.-...++.+ ..+++||.+++=.
T Consensus 178 ~v~~~ir~~V~F~~~dl--~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNL--LAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccC--CCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 112 78889998 664333458999997321 11222455555 5556699988744
No 160
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.20 E-value=0.0037 Score=54.68 Aligned_cols=139 Identities=12% Similarity=0.129 Sum_probs=89.6
Q ss_pred ccChhhhHHHHHHhhhccCC------CCCHHHHHHHHHHHH--hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEE
Q 027826 4 VWSPETASKAYIDTVKSCEL------SHESGVAELVSAMAA--GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCL 75 (218)
Q Consensus 4 ~~~~~~a~~ayl~~l~~~~~------~i~p~~g~fL~~L~~--~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt 75 (218)
.|+.+++.+.|+.+-+.... ++..=.-.++..++. ..+-.+|||||=|-|.+.|. +-++ ++ .-+ ++
T Consensus 56 ~~~~a~~~qd~ls~~~D~ll~~~~k~VMm~WEtpiMha~A~ai~tkggrvLnVGFGMgIidT~--iQe~-~p-~~H--~I 129 (271)
T KOG1709|consen 56 ADGNAPYLQDYLSTAEDTLLDSLGKGVMMRWETPIMHALAEAISTKGGRVLNVGFGMGIIDTF--IQEA-PP-DEH--WI 129 (271)
T ss_pred ccccchHHHHHHhhhhhHHHhhccchhhhhhhhHHHHHHHHHHhhCCceEEEeccchHHHHHH--Hhhc-CC-cce--EE
Confidence 47778888887776333211 111111122333322 26778999998888875444 2332 32 334 45
Q ss_pred EcCCccHHHHHHHHhhCCCc----eEEEEcCCCchhhcCCCC--CccEEEEeCCccCcHHHHHHh----cCCCCCeEEEE
Q 027826 76 VPDERSRSEYVHALGEAGFS----PQVITGEADDEELMDGLV--DIDFLVVDSRRKDFARVLRLA----NLSSRGAVLVC 145 (218)
Q Consensus 76 ~e~~~~~~~~a~~~~~agl~----i~~i~GdA~~~e~L~~l~--~fDfVFIDa~K~~Y~~~~~~~----~L~~~GgvIV~ 145 (218)
+|-+|+..+. +++.|-. |-++.|.- .+++++|. .||=||-|+--+.|.+..+.- .|++|+|++-.
T Consensus 130 iE~hp~V~kr---mr~~gw~ek~nViil~g~W--eDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 130 IEAHPDVLKR---MRDWGWREKENVIILEGRW--EDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred EecCHHHHHH---HHhcccccccceEEEecch--HhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 5777754433 3322222 77888999 89999985 899999999989998876654 77777999988
Q ss_pred eCCCCCCc
Q 027826 146 KNAYSRND 153 (218)
Q Consensus 146 DNvl~~G~ 153 (218)
=|-+..+.
T Consensus 205 fNg~~~~~ 212 (271)
T KOG1709|consen 205 FNGLGADN 212 (271)
T ss_pred ecCcccch
Confidence 88876663
No 161
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0043 Score=52.96 Aligned_cols=88 Identities=13% Similarity=0.110 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHhcC---CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCceEEE
Q 027826 24 SHESGVAELVSAMAAGWD---ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFSPQVI 99 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~---ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~i~~i 99 (218)
..++..+..+-..+.+.+ -+.|+.+|||||. -+ ++.++. |.+.|+.+|.|++..++++.+. +.+..++++
T Consensus 25 ~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~--La--~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~ 98 (198)
T COG2263 25 RTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGI--LA--IGAALL--GASRVLAVDIDPEALEIARANAEELLGDVEFV 98 (198)
T ss_pred CCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCH--HH--HHHHhc--CCcEEEEEecCHHHHHHHHHHHHhhCCceEEE
Confidence 345666666666666554 4679999999998 33 333333 3344777899999998888775 533339999
Q ss_pred EcCCCchhhcCCCCCccEEEEeC
Q 027826 100 TGEADDEELMDGLVDIDFLVVDS 122 (218)
Q Consensus 100 ~GdA~~~e~L~~l~~fDfVFIDa 122 (218)
+.|+ .+.= .++|-++++-
T Consensus 99 ~~dv--~~~~---~~~dtvimNP 116 (198)
T COG2263 99 VADV--SDFR---GKFDTVIMNP 116 (198)
T ss_pred Ecch--hhcC---CccceEEECC
Confidence 9999 4322 1566666663
No 162
>PHA03412 putative methyltransferase; Provisional
Probab=97.15 E-value=0.0066 Score=53.50 Aligned_cols=115 Identities=10% Similarity=0.066 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcC-CCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCc
Q 027826 27 SGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASR-HTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADD 105 (218)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~-~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~ 105 (218)
+..+.++. +......+|||+|||+|. -++.++..++ +...+ |+.+|.++.....++.+.. .++++.+|+
T Consensus 37 ~~iAr~~~--i~~~~~grVLDlG~GSG~--Lalala~~~~~~~~~~-V~aVEID~~Al~~Ar~n~~---~~~~~~~D~-- 106 (241)
T PHA03412 37 IGLARDFT--IDACTSGSVVDLCAGIGG--LSFAMVHMMMYAKPRE-IVCVELNHTYYKLGKRIVP---EATWINADA-- 106 (241)
T ss_pred HHHHHHHH--HhccCCCEEEEccChHHH--HHHHHHHhcccCCCcE-EEEEECCHHHHHHHHhhcc---CCEEEEcch--
Confidence 44445543 234456899999999998 5555665543 22456 7778999987777764421 278999999
Q ss_pred hhhcCCCCCccEEEEeCC---------ccC------cHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 106 EELMDGLVDIDFLVVDSR---------RKD------FARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 106 ~e~L~~l~~fDfVFIDa~---------K~~------Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
..... -.+||+|+-.-- +.. ...+++.+ +|+++|++|+=-|++-.+
T Consensus 107 ~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~ 168 (241)
T PHA03412 107 LTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSANFR 168 (241)
T ss_pred hcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccccCc
Confidence 65321 138999986421 111 22244444 777879987777776333
No 163
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.14 E-value=0.0072 Score=55.01 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=59.1
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCC------CceEEEEcCCCchhhcCCCC
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAG------FSPQVITGEADDEELMDGLV 113 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~ag------l~i~~i~GdA~~~e~L~~l~ 113 (218)
+..+|||||||+|. .++.|+.. +.+ |+-++.++.+.+.++.. ...+ ..+++..+|. .+. + .
T Consensus 144 ~~~~VLDlGcGtG~--~a~~la~~----g~~-V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl--~~l-~--~ 211 (315)
T PLN02585 144 AGVTVCDAGCGTGS--LAIPLALE----GAI-VSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL--ESL-S--G 211 (315)
T ss_pred CCCEEEEecCCCCH--HHHHHHHC----CCE-EEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch--hhc-C--C
Confidence 45799999999999 66666652 456 67778989887776654 3431 2278888887 542 2 4
Q ss_pred CccEEEE-eCCccCc-----HHHHHHh-cCCCCCeEEEEe
Q 027826 114 DIDFLVV-DSRRKDF-----ARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 114 ~fDfVFI-Da~K~~Y-----~~~~~~~-~L~~~GgvIV~D 146 (218)
+||+|+. |.- .+| ...++.+ .+.+ |++||..
T Consensus 212 ~fD~Vv~~~vL-~H~p~~~~~~ll~~l~~l~~-g~liIs~ 249 (315)
T PLN02585 212 KYDTVTCLDVL-IHYPQDKADGMIAHLASLAE-KRLIISF 249 (315)
T ss_pred CcCEEEEcCEE-EecCHHHHHHHHHHHHhhcC-CEEEEEe
Confidence 7998863 321 223 3345555 4444 7887754
No 164
>PRK05785 hypothetical protein; Provisional
Probab=97.12 E-value=0.0047 Score=53.22 Aligned_cols=95 Identities=12% Similarity=0.054 Sum_probs=60.8
Q ss_pred HHHHHHHHh-cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhc
Q 027826 31 ELVSAMAAG-WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELM 109 (218)
Q Consensus 31 ~fL~~L~~~-~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L 109 (218)
+++..+... ..+.+|||||||+|. .+..|+... +++ |+-+|.++++.+.++.- .+.++||+ .+ +
T Consensus 40 ~~~~~l~~~~~~~~~VLDlGcGtG~--~~~~l~~~~---~~~-v~gvD~S~~Ml~~a~~~------~~~~~~d~--~~-l 104 (226)
T PRK05785 40 ELVKTILKYCGRPKKVLDVAAGKGE--LSYHFKKVF---KYY-VVALDYAENMLKMNLVA------DDKVVGSF--EA-L 104 (226)
T ss_pred HHHHHHHHhcCCCCeEEEEcCCCCH--HHHHHHHhc---CCE-EEEECCCHHHHHHHHhc------cceEEech--hh-C
Confidence 445555443 347899999999999 666676643 357 66678888887766531 24578898 54 4
Q ss_pred CCCC-CccEEEEeCCc---cCcHHHHHHh-cCCCCC
Q 027826 110 DGLV-DIDFLVVDSRR---KDFARVLRLA-NLSSRG 140 (218)
Q Consensus 110 ~~l~-~fDfVFIDa~K---~~Y~~~~~~~-~L~~~G 140 (218)
|--+ +||.|+.=-.- .+....++.+ +++++.
T Consensus 105 p~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 105 PFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 5333 89999975432 2334555555 555444
No 165
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.11 E-value=0.0014 Score=54.60 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=45.9
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCC--CccEE
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLV--DIDFL 118 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~--~fDfV 118 (218)
...+|||||||+|. .+..++... +.. ++.+|.+++....++ +.+ ++++.+|+ .+.++.+. +||+|
T Consensus 13 ~~~~iLDiGcG~G~--~~~~l~~~~---~~~-~~giD~s~~~i~~a~---~~~--~~~~~~d~--~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGE--LLALLRDEK---QVR-GYGIEIDQDGVLACV---ARG--VNVIQGDL--DEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCH--HHHHHHhcc---CCc-EEEEeCCHHHHHHHH---HcC--CeEEEEEh--hhcccccCCCCcCEE
Confidence 45699999999998 555555432 234 455677765544432 223 67888999 76554442 89999
Q ss_pred EEeCC
Q 027826 119 VVDSR 123 (218)
Q Consensus 119 FIDa~ 123 (218)
+.-..
T Consensus 80 i~~~~ 84 (194)
T TIGR02081 80 ILSQT 84 (194)
T ss_pred EEhhH
Confidence 98643
No 166
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0062 Score=55.22 Aligned_cols=114 Identities=16% Similarity=0.225 Sum_probs=79.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~G 101 (218)
-++..+--||+.|-...+- +||.+|||+|++|.. ||+..+ ..+ ++-.+.+....+.++.+ ...+++ .+++.+
T Consensus 142 ~lD~GS~lLl~~l~~~~~~-~vlDlGCG~Gvlg~~--la~~~p--~~~-vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s 215 (300)
T COG2813 142 KLDKGSRLLLETLPPDLGG-KVLDLGCGYGVLGLV--LAKKSP--QAK-LTLVDVNARAVESARKNLAANGVENTEVWAS 215 (300)
T ss_pred CcChHHHHHHHhCCccCCC-cEEEeCCCccHHHHH--HHHhCC--CCe-EEEEecCHHHHHHHHHhHHHcCCCccEEEEe
Confidence 4677778888888887776 999999999994443 676544 567 55556666666666644 567777 588889
Q ss_pred CCCchhhcCCCCCccEEEEeCCc----cCcH----HHHHHh--cCCCCCeEEEEeC
Q 027826 102 EADDEELMDGLVDIDFLVVDSRR----KDFA----RVLRLA--NLSSRGAVLVCKN 147 (218)
Q Consensus 102 dA~~~e~L~~l~~fDfVFIDa~K----~~Y~----~~~~~~--~L~~~GgvIV~DN 147 (218)
|. .+-.+. .||+|..--.- .--. +.++.+ .|.+.|-+-|+=|
T Consensus 216 ~~--~~~v~~--kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 216 NL--YEPVEG--KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cc--cccccc--cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 88 665554 89999865332 2222 555555 6777566777777
No 167
>PLN02672 methionine S-methyltransferase
Probab=97.04 E-value=0.0031 Score=65.79 Aligned_cols=89 Identities=9% Similarity=-0.045 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHhc----CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCC------
Q 027826 25 HESGVAELVSAMAAGW----DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAG------ 93 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~----~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~ag------ 93 (218)
-.|++-.|...|.... +.++|||+|||+|+ .++.+|...+ .++ ++.+|.+++..+.|+.+. ..+
T Consensus 98 PRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~--Iai~La~~~~--~~~-v~avDis~~Al~~A~~Na~~n~l~~~~~ 172 (1082)
T PLN02672 98 PEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGW--ISIAIAEKWL--PSK-VYGLDINPRAVKVAWINLYLNALDDDGL 172 (1082)
T ss_pred CchhHHHHHHHHHhcccccCCCCEEEEEecchHH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHHHHHcCcccccc
Confidence 3577777777744321 24689999999999 5666776544 357 666688898877776553 322
Q ss_pred ---------C-c-eEEEEcCCCchhhcCCCC-CccEEEE
Q 027826 94 ---------F-S-PQVITGEADDEELMDGLV-DIDFLVV 120 (218)
Q Consensus 94 ---------l-~-i~~i~GdA~~~e~L~~l~-~fDfVFI 120 (218)
+ . +++++||. .+.++... +||+|.-
T Consensus 173 ~~~~~~~~~l~~rV~f~~sDl--~~~~~~~~~~fDlIVS 209 (1082)
T PLN02672 173 PVYDGEGKTLLDRVEFYESDL--LGYCRDNNIELDRIVG 209 (1082)
T ss_pred cccccccccccccEEEEECch--hhhccccCCceEEEEE
Confidence 1 2 89999999 87775443 6888764
No 168
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.04 E-value=0.0021 Score=55.18 Aligned_cols=96 Identities=18% Similarity=0.113 Sum_probs=53.1
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchhhcCCCCCccEE
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEELMDGLVDIDFL 118 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e~L~~l~~fDfV 118 (218)
-...++||+||+.|. -+--||. ...+ ++.++..+...+.++. +-++.. |+++.++. -+..|. .+||+|
T Consensus 42 ~ry~~alEvGCs~G~--lT~~LA~----rCd~-LlavDis~~Al~~Ar~-Rl~~~~~V~~~~~dv--p~~~P~-~~FDLI 110 (201)
T PF05401_consen 42 RRYRRALEVGCSIGV--LTERLAP----RCDR-LLAVDISPRALARARE-RLAGLPHVEWIQADV--PEFWPE-GRFDLI 110 (201)
T ss_dssp SSEEEEEEE--TTSH--HHHHHGG----GEEE-EEEEES-HHHHHHHHH-HTTT-SSEEEEES-T--TT---S-S-EEEE
T ss_pred cccceeEecCCCccH--HHHHHHH----hhCc-eEEEeCCHHHHHHHHH-hcCCCCCeEEEECcC--CCCCCC-CCeeEE
Confidence 344799999999998 4433443 2456 5556777755544442 123445 99999998 554442 389999
Q ss_pred EEeCCccCcHH-------HHHHh-cCCCCCeEEEEeC
Q 027826 119 VVDSRRKDFAR-------VLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 119 FIDa~K~~Y~~-------~~~~~-~L~~~GgvIV~DN 147 (218)
.+=. -..|.. +++.+ ..+.|||.+|+=.
T Consensus 111 V~SE-VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 111 VLSE-VLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EEES--GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeh-HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 8764 355552 33333 4444588888743
No 169
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.01 E-value=0.0042 Score=53.13 Aligned_cols=114 Identities=15% Similarity=0.162 Sum_probs=72.6
Q ss_pred HHHHHHHH----hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCc--eEEEEcCC
Q 027826 31 ELVSAMAA----GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFS--PQVITGEA 103 (218)
Q Consensus 31 ~fL~~L~~----~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~--i~~i~GdA 103 (218)
.+|.-++. ..+|.+||.+||+.|- --..|+.--- .++ ++-++..+...+.|++++ +-|++ |+|..-|.
T Consensus 53 ~wl~d~~~~~rv~~~A~~VlDLGtGNG~--~L~~L~~egf--~~~-L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI 127 (227)
T KOG1271|consen 53 DWLKDLIVISRVSKQADRVLDLGTGNGH--LLFQLAKEGF--QSK-LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDI 127 (227)
T ss_pred HHHHhhhhhhhhcccccceeeccCCchH--HHHHHHHhcC--CCC-ccccccCHHHHHHHHHHHHhcCCCcceeEEEeec
Confidence 34444444 4567799999999997 4445665432 356 555678888888899886 77887 99988777
Q ss_pred CchhhcCCC-CCccEEE---------EeCC--ccCcHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 104 DDEELMDGL-VDIDFLV---------VDSR--RKDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 104 ~~~e~L~~l-~~fDfVF---------IDa~--K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
.+- ..+ .+||+|+ +-.+ ++.-.-|++.+ +++++||+.|+--.-|--
T Consensus 128 --~~~-~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~ 186 (227)
T KOG1271|consen 128 --TDP-DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK 186 (227)
T ss_pred --cCC-cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH
Confidence 332 112 2566665 3222 23334466667 666679999886655533
No 170
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=96.99 E-value=0.0089 Score=54.68 Aligned_cols=112 Identities=12% Similarity=0.114 Sum_probs=70.1
Q ss_pred cccChhhhHHHHHHhhhccCC-----------CCC--HHHHHHHHHHHHhc-----------CCCeEEEeCcCcchHHHH
Q 027826 3 LVWSPETASKAYIDTVKSCEL-----------SHE--SGVAELVSAMAAGW-----------DARLIVETWSHGGATATS 58 (218)
Q Consensus 3 ~~~~~~~a~~ayl~~l~~~~~-----------~i~--p~~g~fL~~L~~~~-----------~ak~ILEiGt~~GyiGsa 58 (218)
+.|+.+.|+.++=.+|....= .++ |.-..++..+..+. ...+|||||||+|.|...
T Consensus 52 idF~~~~Av~~LnkalL~~~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~l 131 (321)
T PRK11727 52 IDFANPLAVKALNKALLAHFYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPL 131 (321)
T ss_pred eeCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHH
Confidence 568888888888777766421 122 33456665555442 357999999999974333
Q ss_pred HHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhC-CCc--eEEEE-cCCCchhhcCCC----CCccEEEEe
Q 027826 59 VGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEA-GFS--PQVIT-GEADDEELMDGL----VDIDFLVVD 121 (218)
Q Consensus 59 iglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~a-gl~--i~~i~-GdA~~~e~L~~l----~~fDfVFID 121 (218)
|+... .+.+ ++-+|.++...+.|+.+ ... +++ |+++. .+. .+.+..+ +.||||+--
T Consensus 132 --La~~~--~~~~-~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~--~~i~~~i~~~~~~fDlivcN 196 (321)
T PRK11727 132 --IGVHE--YGWR-FVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDS--KAIFKGIIHKNERFDATLCN 196 (321)
T ss_pred --HHhhC--CCCE-EEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccch--hhhhhcccccCCceEEEEeC
Confidence 33332 2457 55557888887777665 455 576 88864 454 4444432 379999853
No 171
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.97 E-value=0.0026 Score=55.40 Aligned_cols=75 Identities=17% Similarity=0.118 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEA 103 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA 103 (218)
.+++...+-+-..+...+..+|||||||+|. .+..|+... .+ ++.+|.++.+...++......-.++++++|+
T Consensus 12 l~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~--lt~~L~~~~----~~-v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~ 84 (253)
T TIGR00755 12 LIDESVIQKIVEAANVLEGDVVLEIGPGLGA--LTEPLLKRA----KK-VTAIEIDPRLAEILRKLLSLYERLEVIEGDA 84 (253)
T ss_pred CCCHHHHHHHHHhcCCCCcCEEEEeCCCCCH--HHHHHHHhC----Cc-EEEEECCHHHHHHHHHHhCcCCcEEEEECch
Confidence 4556666555555566678899999999999 666666543 34 6667888887766654332211289999999
Q ss_pred Cchh
Q 027826 104 DDEE 107 (218)
Q Consensus 104 ~~~e 107 (218)
.+
T Consensus 85 --~~ 86 (253)
T TIGR00755 85 --LK 86 (253)
T ss_pred --hc
Confidence 65
No 172
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=96.91 E-value=0.0061 Score=58.07 Aligned_cols=113 Identities=14% Similarity=0.217 Sum_probs=67.4
Q ss_pred HHHHHHHHHhc----CCCeEEEeCcCcchHHHHHHHHHhc-CCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEc
Q 027826 30 AELVSAMAAGW----DARLIVETWSHGGATATSVGLAVAS-RHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITG 101 (218)
Q Consensus 30 g~fL~~L~~~~----~ak~ILEiGt~~GyiGsaiglA~a~-~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~G 101 (218)
.+.|.-..+.. +.+.|+.||+|+|-+ +..+ +.|+ ...+...|+.+|.++......+.. ++.|++ |+++.|
T Consensus 171 ~~al~D~~~~~~~~~~~~vVldVGAGrGpL-~~~a-l~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~ 248 (448)
T PF05185_consen 171 EEALKDRVRKNSYSSKDKVVLDVGAGRGPL-SMFA-LQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHG 248 (448)
T ss_dssp HHHHHHHHTTS-SEETT-EEEEES-TTSHH-HHHH-HHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES
T ss_pred HHHHHhhhhhccccccceEEEEeCCCccHH-HHHH-HHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeC
Confidence 34444444444 357899999999973 2212 2222 111222377888888665555544 677775 999999
Q ss_pred CCCchhh-cCCCCCccEEEEe-----CCccCcHHHHHHh-cCCCCCeEEEEeCC
Q 027826 102 EADDEEL-MDGLVDIDFLVVD-----SRRKDFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 102 dA~~~e~-L~~l~~fDfVFID-----a~K~~Y~~~~~~~-~L~~~GgvIV~DNv 148 (218)
|. .++ +| .+.|+|.-- ++.+.-++.++.+ +.+++||+++=...
T Consensus 249 d~--r~v~lp--ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~~~ 298 (448)
T PF05185_consen 249 DM--REVELP--EKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPSSY 298 (448)
T ss_dssp -T--TTSCHS--S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESSEE
T ss_pred cc--cCCCCC--CceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCcch
Confidence 99 653 22 278888643 2456778888887 66666899875544
No 173
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=96.82 E-value=0.01 Score=53.13 Aligned_cols=96 Identities=11% Similarity=0.156 Sum_probs=67.9
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCC----CCcEEEEEEcCCccHHHHHHHH-hhCCCc----eEEEEcCCCchhhcCCCC
Q 027826 43 RLIVETWSHGGATATSVGLAVASRH----TGGRHVCLVPDERSRSEYVHAL-GEAGFS----PQVITGEADDEELMDGLV 113 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~----~~G~vitt~e~~~~~~~~a~~~-~~agl~----i~~i~GdA~~~e~L~~l~ 113 (218)
-++|++++|||- .|.++...+.. .+++ |++.+.+|++...++.= .+-++. +++++||| |.|| ++
T Consensus 102 m~~lDvaGGTGD--iaFril~~v~s~~~~~~~~-V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA---E~Lp-Fd 174 (296)
T KOG1540|consen 102 MKVLDVAGGTGD--IAFRILRHVKSQFGDRESK-VTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA---EDLP-FD 174 (296)
T ss_pred CeEEEecCCcch--hHHHHHHhhccccCCCCce-EEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc---ccCC-CC
Confidence 589999999999 88888887753 2356 78889999886655432 245665 78899999 4466 43
Q ss_pred --CccEEEEeCCccCc---HHHHHHh-cCCCCCeEEEE
Q 027826 114 --DIDFLVVDSRRKDF---ARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 114 --~fDfVFIDa~K~~Y---~~~~~~~-~L~~~GgvIV~ 145 (218)
.||..-|=---.+. ++-++.+ ++++|||.+.+
T Consensus 175 d~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred CCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEE
Confidence 78887766544443 3445555 78888998764
No 174
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.80 E-value=0.0056 Score=51.64 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCC-C
Q 027826 26 ESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEA-D 104 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA-~ 104 (218)
++-.++-+...+--.+...|||+|.++|++.-+| |+...++ .. ++.+|.+++....-.. .. -.+++++||| +
T Consensus 33 Ss~lA~~M~s~I~pesglpVlElGPGTGV~TkaI-L~~gv~~--~~-L~~iE~~~dF~~~L~~--~~-p~~~ii~gda~~ 105 (194)
T COG3963 33 SSILARKMASVIDPESGLPVLELGPGTGVITKAI-LSRGVRP--ES-LTAIEYSPDFVCHLNQ--LY-PGVNIINGDAFD 105 (194)
T ss_pred cHHHHHHHHhccCcccCCeeEEEcCCccHhHHHH-HhcCCCc--cc-eEEEEeCHHHHHHHHH--hC-CCccccccchhh
Confidence 4555565555555667779999999999954443 6665554 34 7788998865433221 11 1167999999 2
Q ss_pred chhhcCCCC--CccEEEEeCCc-----cCcHHHHHHh-cCCCCCeEEE
Q 027826 105 DEELMDGLV--DIDFLVVDSRR-----KDFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 105 ~~e~L~~l~--~fDfVFIDa~K-----~~Y~~~~~~~-~L~~~GgvIV 144 (218)
+..+|..-. .||.|+----- +.-.++++.+ ..++.||.+|
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lv 153 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLV 153 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEE
Confidence 222454432 79998764433 3345667776 3445588776
No 175
>PRK00536 speE spermidine synthase; Provisional
Probab=96.74 E-value=0.014 Score=51.98 Aligned_cols=97 Identities=5% Similarity=-0.080 Sum_probs=66.0
Q ss_pred HHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-h--hCCCc---eEEEEcCCCchhhc
Q 027826 36 MAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-G--EAGFS---PQVITGEADDEELM 109 (218)
Q Consensus 36 L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~--~agl~---i~~i~GdA~~~e~L 109 (218)
|+..-+||+||=||.|-|- ++ -+.++.+ .+ |+-+|.|++..+.++.+ - ..++. ++++.. . .
T Consensus 67 l~~h~~pk~VLIiGGGDGg--~~---REvLkh~-~~-v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~-----~ 133 (262)
T PRK00536 67 GCTKKELKEVLIVDGFDLE--LA---HQLFKYD-TH-VDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L-----L 133 (262)
T ss_pred HhhCCCCCeEEEEcCCchH--HH---HHHHCcC-Ce-eEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h-----h
Confidence 3455789999999999886 33 5555654 36 77789999888777653 1 23454 676652 2 2
Q ss_pred CCC-CCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 110 DGL-VDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 110 ~~l-~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
..- ++||.|.+|.- .=+++++.+ +.+++||++|+=.
T Consensus 134 ~~~~~~fDVIIvDs~--~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 134 DLDIKKYDLIICLQE--PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred hccCCcCCEEEEcCC--CChHHHHHHHHhcCCCcEEEECC
Confidence 222 48999999964 226777788 5555699998844
No 176
>PHA03411 putative methyltransferase; Provisional
Probab=96.68 E-value=0.0087 Score=53.78 Aligned_cols=75 Identities=11% Similarity=0.065 Sum_probs=50.6
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCCCccE
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDF 117 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~~fDf 117 (218)
......+|||+|||+|. -++.++.... +.+ |+.+|.++.+.+.++... . .++++.+|+ .+.... ..||+
T Consensus 61 ~~~~~grVLDLGcGsGi--lsl~la~r~~--~~~-V~gVDisp~al~~Ar~n~--~-~v~~v~~D~--~e~~~~-~kFDl 129 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGR--LSFCMLHRCK--PEK-IVCVELNPEFARIGKRLL--P-EAEWITSDV--FEFESN-EKFDV 129 (279)
T ss_pred ccccCCeEEEcCCCCCH--HHHHHHHhCC--CCE-EEEEECCHHHHHHHHHhC--c-CCEEEECch--hhhccc-CCCcE
Confidence 33445799999999997 4444444322 346 666788887776665431 1 388999999 876532 38999
Q ss_pred EEEeCC
Q 027826 118 LVVDSR 123 (218)
Q Consensus 118 VFIDa~ 123 (218)
|+.+..
T Consensus 130 IIsNPP 135 (279)
T PHA03411 130 VISNPP 135 (279)
T ss_pred EEEcCC
Confidence 999643
No 177
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.65 E-value=0.0045 Score=53.09 Aligned_cols=104 Identities=15% Similarity=0.129 Sum_probs=66.1
Q ss_pred HHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCC
Q 027826 34 SAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLV 113 (218)
Q Consensus 34 ~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~ 113 (218)
....-..+.++||+||.+.|. .++.++++.+. -+ ++..+. |+..+.++. .-.|+++.||. .+.+|.
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~--~~~~l~~~~P~--l~-~~v~Dl-p~v~~~~~~----~~rv~~~~gd~--f~~~P~-- 158 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGH--FAIALARAYPN--LR-ATVFDL-PEVIEQAKE----ADRVEFVPGDF--FDPLPV-- 158 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSH--HHHHHHHHSTT--SE-EEEEE--HHHHCCHHH----TTTEEEEES-T--TTCCSS--
T ss_pred hccccccCccEEEeccCcchH--HHHHHHHHCCC--Cc-ceeecc-Hhhhhcccc----ccccccccccH--Hhhhcc--
Confidence 333445678899999999999 77888888764 56 555555 444433333 11299999999 766664
Q ss_pred CccEEEEeCCcc-----CcHHHHHHh--cCCCC--CeEEEEeCCCCCC
Q 027826 114 DIDFLVVDSRRK-----DFARVLRLA--NLSSR--GAVLVCKNAYSRN 152 (218)
Q Consensus 114 ~fDfVFIDa~K~-----~Y~~~~~~~--~L~~~--GgvIV~DNvl~~G 152 (218)
+|++++=.--+ +-...++.+ -|.|. |-|+|.|.++-..
T Consensus 159 -~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 159 -ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp -ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred -ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 99999954444 444566666 45442 4666666666444
No 178
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=96.63 E-value=0.03 Score=48.33 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=80.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCC--cEEEEEEcCCcc-HHHHHHHHhhCCCc-eEEE
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTG--GRHVCLVPDERS-RSEYVHALGEAGFS-PQVI 99 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~--G~vitt~e~~~~-~~~~a~~~~~agl~-i~~i 99 (218)
+..|.-.-..+.|+-..+|..|+|+|+-.|= |+|++|.-+.+-| -+++ +++.+-. ..-++.. .. |.++
T Consensus 52 ~k~p~D~~~yQellw~~~P~lvIE~Gs~~GG--Sal~fA~~m~s~Gq~~kvl-~vdIdi~~~~p~a~e-----~p~i~f~ 123 (237)
T COG3510 52 IKSPSDMWNYQELLWELQPSLVIEFGSRHGG--SALFFANMMISIGQPFKVL-GVDIDIKPLDPAARE-----VPDILFI 123 (237)
T ss_pred cCCHHHHHHHHHHHHhcCCceeEeeccccCc--hhhhhhHhHHhcCCCceEE-EEecccCcCChhhhc-----CCCeEEE
Confidence 5678888999999999999999999999986 9999887665533 3533 3333321 1122221 34 9999
Q ss_pred EcCCCchhhcCC---C---CCccEEEEeCCc--cCcHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 100 TGEADDEELMDG---L---VDIDFLVVDSRR--KDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 100 ~GdA~~~e~L~~---l---~~fDfVFIDa~K--~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
+|+.++.++..+ + .+-=||.+|++- ++-+.-++++ +|+..|.-+|+-+..-.+
T Consensus 124 egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 124 EGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred eCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 999855544443 2 256689999984 2344455555 666658887776665433
No 179
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.56 E-value=0.0089 Score=53.19 Aligned_cols=87 Identities=18% Similarity=0.123 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCC
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEA 103 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA 103 (218)
+++...+-+-..+....-.+|||||.|.|- -|.-|++. +.+ |+.+|.|+.+...-+.... ... +++++|||
T Consensus 14 ~d~~v~~kIv~~a~~~~~d~VlEIGpG~Ga--LT~~Ll~~----~~~-v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~Da 85 (259)
T COG0030 14 IDKNVIDKIVEAANISPGDNVLEIGPGLGA--LTEPLLER----AAR-VTAIEIDRRLAEVLKERFA-PYDNLTVINGDA 85 (259)
T ss_pred cCHHHHHHHHHhcCCCCCCeEEEECCCCCH--HHHHHHhh----cCe-EEEEEeCHHHHHHHHHhcc-cccceEEEeCch
Confidence 344443333333333344579999999998 44445543 346 7788999876554433222 223 89999999
Q ss_pred Cchh-hcCCCCCccEEEEe
Q 027826 104 DDEE-LMDGLVDIDFLVVD 121 (218)
Q Consensus 104 ~~~e-~L~~l~~fDfVFID 121 (218)
++ -++++..++.|+--
T Consensus 86 --Lk~d~~~l~~~~~vVaN 102 (259)
T COG0030 86 --LKFDFPSLAQPYKVVAN 102 (259)
T ss_pred --hcCcchhhcCCCEEEEc
Confidence 55 23333245555533
No 180
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.49 E-value=0.015 Score=57.45 Aligned_cols=102 Identities=20% Similarity=0.098 Sum_probs=64.3
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhc-------C-CCCcEE-EEEEcCCcc-HHHHHH-------------HHh------h
Q 027826 41 DARLIVETWSHGGATATSVGLAVAS-------R-HTGGRH-VCLVPDERS-RSEYVH-------------ALG------E 91 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~-------~-~~~G~v-itt~e~~~~-~~~~a~-------------~~~------~ 91 (218)
+.=+|+|+|=|+|| -++....+. + ....++ +.++|..|- ..+.++ .+. .
T Consensus 57 ~~~~i~e~gfG~G~--N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (662)
T PRK01747 57 RRFVIAETGFGTGL--NFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLL 134 (662)
T ss_pred CcEEEEecCcchHH--HHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccC
Confidence 34689999999999 555533322 1 112343 566776442 122222 221 1
Q ss_pred CCC----------ceEEEEcCCCchhhcCCCC-CccEEEEeCCcc------CcHHHHHHh-cCCCCCeEEEEe
Q 027826 92 AGF----------SPQVITGEADDEELMDGLV-DIDFLVVDSRRK------DFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 92 agl----------~i~~i~GdA~~~e~L~~l~-~fDfVFIDa~K~------~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
.|+ ..+++.||| .+.|+++. .+|.+|+|+--. --+++|..+ ++.++||.+++-
T Consensus 135 ~g~~~~~~~~~~~~l~l~~gd~--~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 135 PGCHRLLFDDGRVTLDLWFGDA--NELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred CCceEEEecCCcEEEEEEecCH--HHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 233 255788999 99999996 799999997533 235577776 777779999865
No 181
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.44 E-value=0.022 Score=55.01 Aligned_cols=98 Identities=11% Similarity=0.090 Sum_probs=65.1
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchhhcCCCC--Ccc
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEELMDGLV--DID 116 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e~L~~l~--~fD 116 (218)
.+...+||||||.|= ..+.+|...++ -.+|-++-..+....+.+...+.|+. +.++.+|+ ..+...+. ++|
T Consensus 346 ~~~p~~lEIG~G~G~--~~~~~A~~~p~--~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~--~~~~~~~~~~sv~ 419 (506)
T PRK01544 346 EKRKVFLEIGFGMGE--HFINQAKMNPD--ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNL--DLILNDLPNNSLD 419 (506)
T ss_pred CCCceEEEECCCchH--HHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCH--HHHHHhcCccccc
Confidence 357889999999997 88888887664 34455433333233344445678888 88998888 65555553 567
Q ss_pred EEEE---eCC--cc------CcHHHHHHh-cCCCCCeEE
Q 027826 117 FLVV---DSR--RK------DFARVLRLA-NLSSRGAVL 143 (218)
Q Consensus 117 fVFI---Da~--K~------~Y~~~~~~~-~L~~~GgvI 143 (218)
-||| |-| |. -.+++++.+ .++++||.|
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i 458 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNL 458 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEE
Confidence 6666 666 22 256788887 555558865
No 182
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=0.019 Score=48.99 Aligned_cols=77 Identities=14% Similarity=0.083 Sum_probs=50.2
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCceEEEEcCCCchhhcCCCCCcc
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQVITGEADDEELMDGLVDID 116 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~i~~i~GdA~~~e~L~~l~~fD 116 (218)
+.++++-++|||||+|++-|. |+....+ +...++| +.||+..++-. .....+..++++.-|- ...|.. ++.|
T Consensus 40 ~~~~~~i~lEIG~GSGvvstf--L~~~i~~-~~~~lat-DiNp~A~~~Tl~TA~~n~~~~~~V~tdl--~~~l~~-~~VD 112 (209)
T KOG3191|consen 40 KGHNPEICLEIGCGSGVVSTF--LASVIGP-QALYLAT-DINPEALEATLETARCNRVHIDVVRTDL--LSGLRN-ESVD 112 (209)
T ss_pred hhcCceeEEEecCCcchHHHH--HHHhcCC-CceEEEe-cCCHHHHHHHHHHHHhcCCccceeehhH--Hhhhcc-CCcc
Confidence 344599999999999995444 6666553 4444565 67776655433 2334444477777777 776666 6888
Q ss_pred EEEEe
Q 027826 117 FLVVD 121 (218)
Q Consensus 117 fVFID 121 (218)
.+...
T Consensus 113 vLvfN 117 (209)
T KOG3191|consen 113 VLVFN 117 (209)
T ss_pred EEEEC
Confidence 77654
No 183
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.33 E-value=0.028 Score=48.51 Aligned_cols=107 Identities=16% Similarity=0.048 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCC----------
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGF---------- 94 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl---------- 94 (218)
+.|.--+++.. .......+||-.|||.|| -.++||.. |.-|+-+|..+...+.+ +.+.++
T Consensus 22 ~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~--D~~~La~~-----G~~VvGvDls~~Ai~~~--~~e~~~~~~~~~~~~~ 91 (218)
T PF05724_consen 22 PNPALVEYLDS-LALKPGGRVLVPGCGKGY--DMLWLAEQ-----GHDVVGVDLSPTAIEQA--FEENNLEPTVTSVGGF 91 (218)
T ss_dssp STHHHHHHHHH-HTTSTSEEEEETTTTTSC--HHHHHHHT-----TEEEEEEES-HHHHHHH--HHHCTTEEECTTCTTE
T ss_pred CCHHHHHHHHh-cCCCCCCeEEEeCCCChH--HHHHHHHC-----CCeEEEEecCHHHHHHH--HHHhccCCCcccccce
Confidence 45555555555 234555699999999999 89888862 44477788887543332 222222
Q ss_pred -----c-eEEEEcCCCchhhcCCC-CCccEEEEe-----CCccCcHHHHHHh-cCCCCCeEE
Q 027826 95 -----S-PQVITGEADDEELMDGL-VDIDFLVVD-----SRRKDFARVLRLA-NLSSRGAVL 143 (218)
Q Consensus 95 -----~-i~~i~GdA~~~e~L~~l-~~fDfVFID-----a~K~~Y~~~~~~~-~L~~~GgvI 143 (218)
. |++.+||. .+.=+.. .+||+|+== -..+.=.+|.+.+ .|+++||.+
T Consensus 92 ~~~~~~~i~~~~gDf--F~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~ 151 (218)
T PF05724_consen 92 KRYQAGRITIYCGDF--FELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRG 151 (218)
T ss_dssp EEETTSSEEEEES-T--TTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEE
T ss_pred eeecCCceEEEEccc--ccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcE
Confidence 1 68999999 8854443 389998622 2356778899998 777668883
No 184
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.26 E-value=0.033 Score=48.60 Aligned_cols=97 Identities=7% Similarity=-0.014 Sum_probs=65.7
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhh----------------CCCceEEEEcCCCc
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGE----------------AGFSPQVITGEADD 105 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~----------------agl~i~~i~GdA~~ 105 (218)
..+||-.|||.|+ -+++||.. |-+ |+-+|..+...+.+ +++ .+..|++++||.
T Consensus 44 ~~rvLvPgCGkg~--D~~~LA~~----G~~-V~GvDlS~~Ai~~~--~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~-- 112 (226)
T PRK13256 44 SSVCLIPMCGCSI--DMLFFLSK----GVK-VIGIELSEKAVLSF--FSQNTINYEVIHGNDYKLYKGDDIEIYVADI-- 112 (226)
T ss_pred CCeEEEeCCCChH--HHHHHHhC----CCc-EEEEecCHHHHHHH--HHHcCCCcceecccccceeccCceEEEEccC--
Confidence 3799999999999 99999863 334 77788887543332 222 233489999999
Q ss_pred hhhcC--C-CCCccEEEEeC-----CccCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 106 EELMD--G-LVDIDFLVVDS-----RRKDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 106 ~e~L~--~-l~~fDfVFIDa-----~K~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
.+.=+ . +.+||+|+-=+ ..+.=.+|.+.+ .++++||.++.=..-
T Consensus 113 f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 113 FNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 77422 1 34788865433 345566788888 666668887765543
No 185
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=96.09 E-value=0.022 Score=48.70 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=58.0
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCC--CccEEEE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLV--DIDFLVV 120 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~--~fDfVFI 120 (218)
.+||++|||.|- |...+.+..+.-..-+|.+++..... .+-| +.+++||+ .+-|+.++ +||.|.+
T Consensus 15 srVLDLGCGdG~------LL~~L~~~k~v~g~GvEid~~~v~~c---v~rG--v~Viq~Dl--d~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 15 SRVLDLGCGDGE------LLAYLKDEKQVDGYGVEIDPDNVAAC---VARG--VSVIQGDL--DEGLADFPDQSFDYVIL 81 (193)
T ss_pred CEEEecCCCchH------HHHHHHHhcCCeEEEEecCHHHHHHH---HHcC--CCEEECCH--HHhHhhCCCCCccEEeh
Confidence 699999999886 22223222222245678887543222 2344 57999999 88898885 9999998
Q ss_pred eCCccCcHHHHHH----h-cCCCCCeEEEEeCC
Q 027826 121 DSRRKDFARVLRL----A-NLSSRGAVLVCKNA 148 (218)
Q Consensus 121 Da~K~~Y~~~~~~----~-~L~~~GgvIV~DNv 148 (218)
--.- |....=+. + +..+ -+||-+-|.
T Consensus 82 sqtL-Q~~~~P~~vL~EmlRVgr-~~IVsFPNF 112 (193)
T PF07021_consen 82 SQTL-QAVRRPDEVLEEMLRVGR-RAIVSFPNF 112 (193)
T ss_pred HhHH-HhHhHHHHHHHHHHHhcC-eEEEEecCh
Confidence 6542 22222222 2 4545 689999997
No 186
>PRK04148 hypothetical protein; Provisional
Probab=96.06 E-value=0.024 Score=45.78 Aligned_cols=94 Identities=16% Similarity=0.058 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchh
Q 027826 28 GVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEE 107 (218)
Q Consensus 28 ~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e 107 (218)
+.+++|..-....+.++|||||||+|. + + |..+.+.|-. |+.++.+++..+.++ +.+ ++++.+|- .+
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~--~-v--A~~L~~~G~~-ViaIDi~~~aV~~a~---~~~--~~~v~dDl--f~ 69 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYF--K-V--AKKLKESGFD-VIVIDINEKAVEKAK---KLG--LNAFVDDL--FN 69 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCH--H-H--HHHHHHCCCE-EEEEECCHHHHHHHH---HhC--CeEEECcC--CC
Confidence 356666665555556889999999885 2 2 2222232445 666788886544443 223 68888888 54
Q ss_pred hcCC-CCCccEEEE-eCCccCcHHHHHHh
Q 027826 108 LMDG-LVDIDFLVV-DSRRKDFARVLRLA 134 (218)
Q Consensus 108 ~L~~-l~~fDfVFI-Da~K~~Y~~~~~~~ 134 (218)
-=.. ...+|+|.- =...+.-+..++++
T Consensus 70 p~~~~y~~a~liysirpp~el~~~~~~la 98 (134)
T PRK04148 70 PNLEIYKNAKLIYSIRPPRDLQPFILELA 98 (134)
T ss_pred CCHHHHhcCCEEEEeCCCHHHHHHHHHHH
Confidence 2222 248888874 33334455555555
No 187
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.04 E-value=0.028 Score=50.85 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=59.3
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchhhcCCC--C--Ccc
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEELMDGL--V--DID 116 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e~L~~l--~--~fD 116 (218)
...+|+.++|+|. =|..++...++ +|+ |+.++.++++...++..... .. +++++++. .+....+ + ++|
T Consensus 20 g~~vlD~TlG~GG--hS~~il~~~~~-~g~-VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f--~~l~~~l~~~~~~vD 92 (296)
T PRK00050 20 DGIYVDGTFGGGG--HSRAILERLGP-KGR-LIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNF--SNLKEVLAEGLGKVD 92 (296)
T ss_pred CCEEEEeCcCChH--HHHHHHHhCCC-CCE-EEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCH--HHHHHHHHcCCCccC
Confidence 3589999999998 88888888753 688 55678889887776643222 34 99999999 7654333 2 799
Q ss_pred EEEEeCCccCcH
Q 027826 117 FLVVDSRRKDFA 128 (218)
Q Consensus 117 fVFIDa~K~~Y~ 128 (218)
.|++|-.-..|+
T Consensus 93 gIl~DLGvSs~Q 104 (296)
T PRK00050 93 GILLDLGVSSPQ 104 (296)
T ss_pred EEEECCCccccc
Confidence 999998765553
No 188
>PRK10742 putative methyltransferase; Provisional
Probab=96.04 E-value=0.02 Score=50.68 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=55.7
Q ss_pred HHHHhcC---CC--eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhC------C--C-c-eEE
Q 027826 35 AMAAGWD---AR--LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEA------G--F-S-PQV 98 (218)
Q Consensus 35 ~L~~~~~---ak--~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~a------g--l-~-i~~ 98 (218)
.|+++.+ -. +||+.-.|.|- -+ +-.|.. |++ |+.+|.++.....- ..+.++ + + . +++
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~--Da--~~las~--G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l 149 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGR--DA--FVLASV--GCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccH--HH--HHHHHc--CCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEE
Confidence 4555553 33 79997777776 33 222222 678 88889999766544 455553 3 2 3 899
Q ss_pred EEcCCCchhhcCCCC-CccEEEEeCC
Q 027826 99 ITGEADDEELMDGLV-DIDFLVVDSR 123 (218)
Q Consensus 99 i~GdA~~~e~L~~l~-~fDfVFIDa~ 123 (218)
+++|+ .+.|+++. +||+||+|--
T Consensus 150 ~~~da--~~~L~~~~~~fDVVYlDPM 173 (250)
T PRK10742 150 IHASS--LTALTDITPRPQVVYLDPM 173 (250)
T ss_pred EeCcH--HHHHhhCCCCCcEEEECCC
Confidence 99999 99999875 8999999964
No 189
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.03 E-value=0.06 Score=46.39 Aligned_cols=116 Identities=15% Similarity=0.081 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcC-CC-eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCc-----eEEEE
Q 027826 29 VAELVSAMAAGWD-AR-LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFS-----PQVIT 100 (218)
Q Consensus 29 ~g~fL~~L~~~~~-ak-~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~-----i~~i~ 100 (218)
..-.|..|.+... .. +|||||||+|- =+..+|.+++. =+--.+ |.+++. ..+.....++|+. +.+=.
T Consensus 11 k~pIl~vL~~~l~~~~~~vLEiaSGtGq--Ha~~FA~~lP~--l~WqPS-D~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv 85 (204)
T PF06080_consen 11 KDPILEVLKQYLPDSGTRVLEIASGTGQ--HAVYFAQALPH--LTWQPS-DPDDNLRPSIRAWIAEAGLPNVRPPLALDV 85 (204)
T ss_pred HhHHHHHHHHHhCccCceEEEEcCCccH--HHHHHHHHCCC--CEEcCC-CCChHHHhhHHHHHHhcCCcccCCCeEeec
Confidence 3445555555433 33 59999999998 88889999874 232244 344444 3333334566665 33211
Q ss_pred cCCCchhhcC-----CCCCccEEEEe-----CCccCcHHHHHHh-cCCCCCeEEEEeCCCCC
Q 027826 101 GEADDEELMD-----GLVDIDFLVVD-----SRRKDFARVLRLA-NLSSRGAVLVCKNAYSR 151 (218)
Q Consensus 101 GdA~~~e~L~-----~l~~fDfVFID-----a~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~ 151 (218)
.+. -.... .-.+||.||.= +..+.-..+|+.+ +++++||+++.-==+..
T Consensus 86 ~~~--~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~ 145 (204)
T PF06080_consen 86 SAP--PWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNR 145 (204)
T ss_pred CCC--CCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence 111 11111 12389999853 2234556778887 67767999988766533
No 190
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=95.99 E-value=0.031 Score=47.82 Aligned_cols=96 Identities=19% Similarity=0.271 Sum_probs=60.8
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEEEEcCCCchhhcCCCCCc
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVITGEADDEELMDGLVDI 115 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~i~GdA~~~e~L~~l~~f 115 (218)
...-..|+.+-||.|| -+|-+|+-.. ..+ |...|.+|+..+..+ +....+++ |+++.||+ .+.++ -..+
T Consensus 99 v~~~e~VlD~faGIG~--f~l~~ak~~~--~~~-V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~--~~~~~-~~~~ 170 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGP--FSLPIAKHGK--AKR-VYAVDLNPDAVEYLKENIRLNKVENRIEVINGDA--REFLP-EGKF 170 (200)
T ss_dssp --TT-EEEETT-TTTT--THHHHHHHT---SSE-EEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-G--GG----TT-E
T ss_pred CCcceEEEEccCCccH--HHHHHhhhcC--ccE-EEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCH--HHhcC-cccc
Confidence 3456899999999999 7766666322 345 666789998777665 44566777 99999999 99888 4489
Q ss_pred cEEEEeCCccCcHHHHHHh-cCCCCCeEE
Q 027826 116 DFLVVDSRRKDFARVLRLA-NLSSRGAVL 143 (218)
Q Consensus 116 DfVFIDa~K~~Y~~~~~~~-~L~~~GgvI 143 (218)
|=|.++-- ..-.++++.+ .++++||+|
T Consensus 171 drvim~lp-~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 171 DRVIMNLP-ESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp EEEEE--T-SSGGGGHHHHHHHEEEEEEE
T ss_pred CEEEECCh-HHHHHHHHHHHHHhcCCcEE
Confidence 99999875 4444688887 666668886
No 191
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=95.99 E-value=0.014 Score=52.19 Aligned_cols=130 Identities=15% Similarity=0.170 Sum_probs=72.1
Q ss_pred cccChhhhHHHHHHhhhccCCC-CCHHHHHHHHHHHHhcCC-------CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEE
Q 027826 3 LVWSPETASKAYIDTVKSCELS-HESGVAELVSAMAAGWDA-------RLIVETWSHGGATATSVGLAVASRHTGGRHVC 74 (218)
Q Consensus 3 ~~~~~~~a~~ayl~~l~~~~~~-i~p~~g~fL~~L~~~~~a-------k~ILEiGt~~GyiGsaiglA~a~~~~~G~vit 74 (218)
-.|-++.-...+|+.+...+.. |.. .++...-. +.| ++||++|||+|. -+.-||+- |.. |+
T Consensus 47 ~~wwd~~g~~~~Lh~mn~~Rl~fi~d---~~~~~v~~-~~p~~k~~~g~~ilDvGCGgGL--LSepLArl----ga~-V~ 115 (282)
T KOG1270|consen 47 FTWWDEEGVRHPLHSMNQTRLPFIRD---DLRNRVNN-HAPGSKPLLGMKILDVGCGGGL--LSEPLARL----GAQ-VT 115 (282)
T ss_pred ccccccccchhhhhhccchhhhHHHH---HHHhcccc-cCCCccccCCceEEEeccCccc--cchhhHhh----CCe-eE
Confidence 3577777777777776654431 110 01111100 122 569999999999 56566652 445 77
Q ss_pred EEcCCccHHHHHHHHhh------CCCc--eEEEEcCCCchhhcCCCCCccEEEEeCCccCc---HHHHHHh-cCCCCCeE
Q 027826 75 LVPDERSRSEYVHALGE------AGFS--PQVITGEADDEELMDGLVDIDFLVVDSRRKDF---ARVLRLA-NLSSRGAV 142 (218)
Q Consensus 75 t~e~~~~~~~~a~~~~~------agl~--i~~i~GdA~~~e~L~~l~~fDfVFIDa~K~~Y---~~~~~~~-~L~~~Ggv 142 (218)
-++..+++.+.|+..+. .++. +++.+.++ ...- ++||-|..==--++| +++++-+ .+++|||.
T Consensus 116 GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~--E~~~---~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~ 190 (282)
T KOG1270|consen 116 GIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDV--EGLT---GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGR 190 (282)
T ss_pred eecccHHHHHHHHHhhhcCchhccccceeeehhhcch--hhcc---cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCc
Confidence 77888888877765542 2222 44555555 2222 259988765444555 3445554 44444665
Q ss_pred EEEeCC
Q 027826 143 LVCKNA 148 (218)
Q Consensus 143 IV~DNv 148 (218)
++.-.+
T Consensus 191 lfitti 196 (282)
T KOG1270|consen 191 LFITTI 196 (282)
T ss_pred eEeeeh
Confidence 555443
No 192
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.54 E-value=0.057 Score=47.42 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEA 103 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA 103 (218)
.+++...+-+...+.......|||||.|.|. -|-.|+... .+ ++.+|.++.....-+......-.++++.+|+
T Consensus 13 L~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~--lT~~L~~~~----~~-v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~ 85 (262)
T PF00398_consen 13 LVDPNIADKIVDALDLSEGDTVLEIGPGPGA--LTRELLKRG----KR-VIAVEIDPDLAKHLKERFASNPNVEVINGDF 85 (262)
T ss_dssp EEHHHHHHHHHHHHTCGTTSEEEEESSTTSC--CHHHHHHHS----SE-EEEEESSHHHHHHHHHHCTTCSSEEEEES-T
T ss_pred eCCHHHHHHHHHhcCCCCCCEEEEeCCCCcc--chhhHhccc----Cc-ceeecCcHhHHHHHHHHhhhcccceeeecch
Confidence 4567777777777777788999999999999 444465543 46 7778999866544333222122299999999
Q ss_pred Cchh
Q 027826 104 DDEE 107 (218)
Q Consensus 104 ~~~e 107 (218)
++
T Consensus 86 --l~ 87 (262)
T PF00398_consen 86 --LK 87 (262)
T ss_dssp --TT
T ss_pred --hc
Confidence 64
No 193
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=95.33 E-value=0.15 Score=47.14 Aligned_cols=98 Identities=18% Similarity=0.294 Sum_probs=64.3
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEcCCCchh-hcCCCCC
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGEADDEE-LMDGLVD 114 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~GdA~~~e-~L~~l~~ 114 (218)
+.+-|.||.+||++|. -++.-|+| |.+.|..+|... .++.|+.+ +..+++ |+++.|.. .+ .|| .++
T Consensus 58 lf~dK~VlDVGcGtGI--LS~F~akA----GA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkv--Edi~LP-~eK 127 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGI--LSMFAAKA----GARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKV--EDIELP-VEK 127 (346)
T ss_pred hcCCCEEEEcCCCccH--HHHHHHHh----CcceEEEEechH-HHHHHHHHHHhcCccceEEEeecce--EEEecC-ccc
Confidence 6788999999999997 44333333 445577777754 55666554 577787 99999999 66 455 558
Q ss_pred ccEEEEeCCccCcHHHHHHh---------cCCCCCeEEEEeCC
Q 027826 115 IDFLVVDSRRKDFARVLRLA---------NLSSRGAVLVCKNA 148 (218)
Q Consensus 115 fDfVFIDa~K~~Y~~~~~~~---------~L~~~GgvIV~DNv 148 (218)
.|.|. +.--.|--++|-. +-+++||+|.=|-.
T Consensus 128 VDiIv--SEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a 168 (346)
T KOG1499|consen 128 VDIIV--SEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRA 168 (346)
T ss_pred eeEEe--ehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccc
Confidence 88764 3334454444432 22345999866554
No 194
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=95.18 E-value=0.064 Score=47.54 Aligned_cols=109 Identities=14% Similarity=0.194 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCC-eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-h--hCCCceEEEEcCCCc
Q 027826 30 AELVSAMAAGWDAR-LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-G--EAGFSPQVITGEADD 105 (218)
Q Consensus 30 g~fL~~L~~~~~ak-~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~--~agl~i~~i~GdA~~ 105 (218)
..++..++..+.-. .++|+|||+|- +++++|.-.. +||.| +.++.+...++.. . .......+...+-
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G~Gq--a~~~iae~~k----~VIat-D~s~~mL~~a~k~~~~~y~~t~~~ms~~~~-- 91 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTGNGQ--AARGIAEHYK----EVIAT-DVSEAMLKVAKKHPPVTYCHTPSTMSSDEM-- 91 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCc--chHHHHHhhh----hheee-cCCHHHHHHhhcCCCcccccCCcccccccc--
Confidence 56777777776555 99999999998 9999998633 45665 5566666555422 1 1111133332222
Q ss_pred hhhcCCCCCccEEEEeCCcc--CcHHHHHHh--cCCCCCeEEEEeC
Q 027826 106 EELMDGLVDIDFLVVDSRRK--DFARVLRLA--NLSSRGAVLVCKN 147 (218)
Q Consensus 106 ~e~L~~l~~fDfVFIDa~K~--~Y~~~~~~~--~L~~~GgvIV~DN 147 (218)
.+++..=++.|+|..=-.-+ +-.+++..+ .|+++||+|++=|
T Consensus 92 v~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 92 VDLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred ccccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEE
Confidence 33332213899986532111 234455555 5678798998733
No 195
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.04 E-value=0.14 Score=48.21 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=69.0
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCC-CcEEEEEEcCCccHHHHHHH---Hh---hCCCc---eEEEEcCCCchhh
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHT-GGRHVCLVPDERSRSEYVHA---LG---EAGFS---PQVITGEADDEEL 108 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~-~G~vitt~e~~~~~~~~a~~---~~---~agl~---i~~i~GdA~~~e~ 108 (218)
..+++++|=+|.+-|. ++-+-++-+ -++ |+-+|.||++.+.++. +. +.-++ +.++..|| .+.
T Consensus 287 ~~~a~~vLvlGGGDGL-----AlRellkyP~~~q-I~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDA--f~w 358 (508)
T COG4262 287 VRGARSVLVLGGGDGL-----ALRELLKYPQVEQ-ITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDA--FQW 358 (508)
T ss_pred ccccceEEEEcCCchH-----HHHHHHhCCCcce-EEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccH--HHH
Confidence 4689999999998886 223333333 345 8899999999887752 22 22222 88999999 999
Q ss_pred cCCCC-CccEEEEeCCcc-------Cc-HHHHHHh--cCCCCCeEEEEe
Q 027826 109 MDGLV-DIDFLVVDSRRK-------DF-ARVLRLA--NLSSRGAVLVCK 146 (218)
Q Consensus 109 L~~l~-~fDfVFIDa~K~-------~Y-~~~~~~~--~L~~~GgvIV~D 146 (218)
|++-. .||+|.+|---. .| .+++.++ +|.. +|++|+-
T Consensus 359 lr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e-~Gl~VvQ 406 (508)
T COG4262 359 LRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAE-TGLMVVQ 406 (508)
T ss_pred HHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCc-CceEEEe
Confidence 99865 999999995432 23 3455555 5555 8888764
No 196
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=94.97 E-value=0.21 Score=39.69 Aligned_cols=72 Identities=21% Similarity=0.171 Sum_probs=45.4
Q ss_pred HHHHHHHHHHh----cCCCeEEEeCcCcchHHHHHHHHHhcC--CCCcEEEEEEcCCccHHHHHHHH-hhCC--Cc--eE
Q 027826 29 VAELVSAMAAG----WDARLIVETWSHGGATATSVGLAVASR--HTGGRHVCLVPDERSRSEYVHAL-GEAG--FS--PQ 97 (218)
Q Consensus 29 ~g~fL~~L~~~----~~ak~ILEiGt~~GyiGsaiglA~a~~--~~~G~vitt~e~~~~~~~~a~~~-~~ag--l~--i~ 97 (218)
.++++..++.. .+...|+++|+|-||++.. ||..+. ..+-+ |+.+|.++...+.+... .+.+ +. .+
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~--La~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~ 85 (141)
T PF13679_consen 9 MAELIDSLCDSVGESKRCITVVDLGSGKGYLSRA--LAHLLCNSSPNLR-VLGIDCNESLVESAQKRAQKLGSDLEKRLS 85 (141)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHH--HHHHHHhcCCCCe-EEEEECCcHHHHHHHHHHHHhcchhhccch
Confidence 45666666666 8899999999999994444 444221 22446 67778888776665544 3444 32 45
Q ss_pred EEEcCC
Q 027826 98 VITGEA 103 (218)
Q Consensus 98 ~i~GdA 103 (218)
+..++.
T Consensus 86 ~~~~~~ 91 (141)
T PF13679_consen 86 FIQGDI 91 (141)
T ss_pred hhccch
Confidence 555544
No 197
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=94.94 E-value=0.064 Score=47.59 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=56.5
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc---eEEEEcCCCchhhcCCC--CCc
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS---PQVITGEADDEELMDGL--VDI 115 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~---i~~i~GdA~~~e~L~~l--~~f 115 (218)
.|.+|||||||.|= |..=+.+-.+.++=+ |..-+-.|...+.-+.. .++. +.--.-|.+.-+..... .++
T Consensus 71 ~~~~ilEvGCGvGN--tvfPll~~~~n~~l~-v~acDfsp~Ai~~vk~~--~~~~e~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 71 SAETILEVGCGVGN--TVFPLLKTSPNNRLK-VYACDFSPRAIELVKKS--SGYDESRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred ChhhheeeccCCCc--ccchhhhcCCCCCeE-EEEcCCChHHHHHHHhc--cccchhhhcccceeccchhccCCCCcCcc
Confidence 34489999999886 544355544443345 44446666444443332 2322 22222222111112222 256
Q ss_pred cE-----EEEeCCccCcHHHHHHh-cCCCCCeEEEEeCC
Q 027826 116 DF-----LVVDSRRKDFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 116 Df-----VFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNv 148 (218)
|+ ||.=-.++.-+..++-+ +|++|||.|++=+-
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 63 44455578888888888 77777999887653
No 198
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.92 E-value=0.3 Score=45.22 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc--eEEEEcCCCc
Q 027826 29 VAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS--PQVITGEADD 105 (218)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~--i~~i~GdA~~ 105 (218)
+.+=..++-....=..||..=+|.|| -+|-+|.... .+ |+..|.||+.....+. +...+++ |+.++||+
T Consensus 176 ~~ER~Rva~~v~~GE~V~DmFAGVGp--fsi~~Ak~g~---~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~-- 247 (341)
T COG2520 176 STERARVAELVKEGETVLDMFAGVGP--FSIPIAKKGR---PK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA-- 247 (341)
T ss_pred hHHHHHHHhhhcCCCEEEEccCCccc--chhhhhhcCC---ce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccH--
Confidence 33444444444556789998788888 6766666533 24 7778999998777654 4566666 89999999
Q ss_pred hhhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 106 EELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 106 ~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
.++++++..+|=|++---+.. .+|++.+ .++++||+|-.....-..
T Consensus 248 rev~~~~~~aDrIim~~p~~a-~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 248 REVAPELGVADRIIMGLPKSA-HEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred HHhhhccccCCEEEeCCCCcc-hhhHHHHHHHhhcCcEEEEEeccchh
Confidence 999999889999999887544 3466666 555559999888876544
No 199
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.91 E-value=0.12 Score=47.51 Aligned_cols=102 Identities=21% Similarity=0.193 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHH-HhcCC--CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEE
Q 027826 24 SHESGVAELVSAMA-AGWDA--RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQV 98 (218)
Q Consensus 24 ~i~p~~g~fL~~L~-~~~~a--k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~ 98 (218)
++.+.+.+-|...+ ...+. .+|||+=||.|- -++.||.. ..+ |+.+|.+++..+.|+.+ ...|+. +++
T Consensus 176 QvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~--fsl~la~~----~~~-V~gvE~~~~av~~A~~Na~~N~i~n~~f 248 (352)
T PF05958_consen 176 QVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGT--FSLPLAKK----AKK-VIGVEIVEEAVEDARENAKLNGIDNVEF 248 (352)
T ss_dssp -SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTC--CHHHHHCC----SSE-EEEEES-HHHHHHHHHHHHHTT--SEEE
T ss_pred cCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCH--HHHHHHhh----CCe-EEEeeCCHHHHHHHHHHHHHcCCCcceE
Confidence 45566665555444 44443 379999999887 44445532 346 66678888887777765 478888 999
Q ss_pred EEcCCCchhhcCC--------------CC--CccEEEEeCCc-cCcHHHHHHh
Q 027826 99 ITGEADDEELMDG--------------LV--DIDFLVVDSRR-KDFARVLRLA 134 (218)
Q Consensus 99 i~GdA~~~e~L~~--------------l~--~fDfVFIDa~K-~~Y~~~~~~~ 134 (218)
+.++| .++... +. .+|.|++|-.. +-.....+.+
T Consensus 249 ~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~ 299 (352)
T PF05958_consen 249 IRGDA--EDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI 299 (352)
T ss_dssp EE--S--HHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred EEeec--cchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence 99998 665431 11 58999999874 4555566666
No 200
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=94.89 E-value=0.61 Score=42.53 Aligned_cols=126 Identities=14% Similarity=0.091 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEc
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITG 101 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~G 101 (218)
+.....+-+..|...-+|-+||.|-+|.|= .-+-.....+...-. |...+.++.-.+..+.+ ++.|++ ++|..|
T Consensus 119 l~~~i~~ai~~L~~~g~pvrIlDIAaG~GR--YvlDal~~~~~~~~~-i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~ 195 (311)
T PF12147_consen 119 LEELIRQAIARLREQGRPVRILDIAAGHGR--YVLDALEKHPERPDS-ILLRDYSPINVEKGRALIAERGLEDIARFEQG 195 (311)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeccCCcH--HHHHHHHhCCCCCce-EEEEeCCHHHHHHHHHHHHHcCCccceEEEec
Confidence 444555556667777899999999999885 444323322321124 66667777665665655 689999 599999
Q ss_pred CCCchhhcCCCC-CccEEEEeCCccCcHH------HHHHh-cCCCCCeEEEEeCCCCCCc
Q 027826 102 EADDEELMDGLV-DIDFLVVDSRRKDFAR------VLRLA-NLSSRGAVLVCKNAYSRND 153 (218)
Q Consensus 102 dA~~~e~L~~l~-~fDfVFIDa~K~~Y~~------~~~~~-~L~~~GgvIV~DNvl~~G~ 153 (218)
||-+.+.+..++ ..+++.+-+--+.+++ .+.-+ ..+++||.+|.-|-=||..
T Consensus 196 dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 196 DAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred CCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 994445677787 6899999875444443 23333 4556699999999999884
No 201
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.79 E-value=0.12 Score=40.15 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=37.6
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEcCC
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITGEA 103 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~GdA 103 (218)
.+|+|||+.|+ .+++++...+ +++ +..+|-+++.....+ ++...++. ++++....
T Consensus 1 ~vlDiGa~~G~--~~~~~~~~~~--~~~-v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGD--TSLYFARKGA--EGR-VIAFEPLPDAYEILEENVKLNNLPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccH--HHHHHHHhCC--CCE-EEEEecCHHHHHHHHHHHHHcCCCcEEEEEeee
Confidence 37999999999 8888887643 457 666788887766554 44555665 66554433
No 202
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=94.70 E-value=0.34 Score=44.88 Aligned_cols=110 Identities=16% Similarity=0.218 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
.++|..+.+|-.|++...=.+||+ .+.|. -++-+..++. |.++|-+ +.+..+..-++ |+...|++ ..+..+
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlD--PFcGT--GgiLiEagl~--G~~viG~-Did~~mv~gak~Nl~~y~i~~~~~~~~ 252 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLD--PFCGT--GGILIEAGLM--GARVIGS-DIDERMVRGAKINLEYYGIEDYPVLKV 252 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeec--CcCCc--cHHHHhhhhc--CceEeec-chHHHHHhhhhhhhhhhCcCceeEEEe
Confidence 679999999999999999999999 55553 2233444443 6786665 67777766555 56789888 777776
Q ss_pred -CCCchhhcCCCC--CccEEEEeCC-------c-----cCcHHHHHHh-cCCCCCeEEE
Q 027826 102 -EADDEELMDGLV--DIDFLVVDSR-------R-----KDFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 102 -dA~~~e~L~~l~--~fDfVFIDa~-------K-----~~Y~~~~~~~-~L~~~GgvIV 144 (218)
|| .. || |. .+|=|.-|-. | +.|.+.|+.+ .++++||.+|
T Consensus 253 ~Da--~~-lp-l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~v 307 (347)
T COG1041 253 LDA--TN-LP-LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIV 307 (347)
T ss_pred ccc--cc-CC-CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEE
Confidence 99 44 44 64 5999999932 2 2388888888 6666688554
No 203
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=94.61 E-value=0.15 Score=45.54 Aligned_cols=52 Identities=8% Similarity=0.063 Sum_probs=38.2
Q ss_pred HHHHHH-hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH
Q 027826 33 VSAMAA-GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL 89 (218)
Q Consensus 33 L~~L~~-~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~ 89 (218)
|..|=. ...++.+|.|||-+|. -++.||+-..+ +.|.-++.++.+.+.|+..
T Consensus 49 Lk~L~~~~f~~~~~LDIGCNsG~--lt~~iak~F~~---r~iLGvDID~~LI~~Ark~ 101 (288)
T KOG2899|consen 49 LKVLEKDWFEPKQALDIGCNSGF--LTLSIAKDFGP---RRILGVDIDPVLIQRARKE 101 (288)
T ss_pred hhhccccccCcceeEeccCCcch--hHHHHHHhhcc---ceeeEeeccHHHHHHHHHh
Confidence 444422 4589999999999999 88888887643 4466678888887777544
No 204
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.47 E-value=0.42 Score=45.51 Aligned_cols=116 Identities=23% Similarity=0.221 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHH----hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCc-eE
Q 027826 24 SHESGVAELVSAMAA----GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFS-PQ 97 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~----~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~-i~ 97 (218)
+..+.+.+-|...+. ..+..++|++=||.|- -++.||. ...+ |+.+|..++..+.|+.++ ..|+. ++
T Consensus 272 Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~--f~l~lA~----~~~~-V~gvEi~~~aV~~A~~NA~~n~i~N~~ 344 (432)
T COG2265 272 QVNPAVAEKLYETALEWLELAGGERVLDLYCGVGT--FGLPLAK----RVKK-VHGVEISPEAVEAAQENAAANGIDNVE 344 (432)
T ss_pred ecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCCh--hhhhhcc----cCCE-EEEEecCHHHHHHHHHHHHHcCCCcEE
Confidence 455666666665554 2345689998888777 5555552 1345 667799999888888774 78888 99
Q ss_pred EEEcCCCchhhcCCCC---CccEEEEeCCccCcH-HHHHHh-cCCCCCeEEEEeCC
Q 027826 98 VITGEADDEELMDGLV---DIDFLVVDSRRKDFA-RVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 98 ~i~GdA~~~e~L~~l~---~fDfVFIDa~K~~Y~-~~~~~~-~L~~~GgvIV~DNv 148 (218)
|+.|+| .+.++... .+|.|++|--...-. +.++.+ ++.|+.=|-|.=|.
T Consensus 345 f~~~~a--e~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP 398 (432)
T COG2265 345 FIAGDA--EEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNP 398 (432)
T ss_pred EEeCCH--HHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCH
Confidence 999999 99998863 899999998866555 888888 77775544454443
No 205
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=94.24 E-value=0.14 Score=45.84 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~-i~~i~G 101 (218)
.+.....++...++....-.+||++-++-|- =+..||..+.. .|. |+..+.++++.... +++.+.|+. +.+...
T Consensus 68 ~vQd~sS~l~~~~L~~~~~~~VLD~CAapGg--Kt~~la~~~~~-~g~-i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~ 143 (283)
T PF01189_consen 68 YVQDESSQLVALALDPQPGERVLDMCAAPGG--KTTHLAELMGN-KGE-IVANDISPKRLKRLKENLKRLGVFNVIVINA 143 (283)
T ss_dssp EEHHHHHHHHHHHHTTTTTSEEEESSCTTSH--HHHHHHHHTTT-TSE-EEEEESSHHHHHHHHHHHHHTT-SSEEEEES
T ss_pred EecccccccccccccccccccccccccCCCC--ceeeeeecccc-hhH-HHHhccCHHHHHHHHHHHHhcCCceEEEEee
Confidence 3456666777777777777899998888775 77778887654 688 44557777766554 456799999 888889
Q ss_pred CCCchhhcCCC-C-CccEEEEeCC
Q 027826 102 EADDEELMDGL-V-DIDFLVVDSR 123 (218)
Q Consensus 102 dA~~~e~L~~l-~-~fDfVFIDa~ 123 (218)
|+ .+..+.. . .||.|++||.
T Consensus 144 D~--~~~~~~~~~~~fd~VlvDaP 165 (283)
T PF01189_consen 144 DA--RKLDPKKPESKFDRVLVDAP 165 (283)
T ss_dssp HH--HHHHHHHHTTTEEEEEEECS
T ss_pred cc--ccccccccccccchhhcCCC
Confidence 99 8776543 3 5999999974
No 206
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=93.49 E-value=0.12 Score=45.04 Aligned_cols=74 Identities=8% Similarity=0.056 Sum_probs=40.0
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCC---c-eEEEEcCCCchhhcCCCCCc
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGF---S-PQVITGEADDEELMDGLVDI 115 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl---~-i~~i~GdA~~~e~L~~l~~f 115 (218)
+-+.||++||++|+ -+..++.. . .++ |+.++..+.+... .++ ...+ + ..+..=+. .+.-+.+..+
T Consensus 75 ~~~~vlDiG~gtG~--~t~~l~~~-g--a~~-v~avD~~~~~l~~--~l~~~~~v~~~~~~ni~~~~~--~~~~~d~~~~ 144 (228)
T TIGR00478 75 KNKIVLDVGSSTGG--FTDCALQK-G--AKE-VYGVDVGYNQLAE--KLRQDERVKVLERTNIRYVTP--ADIFPDFATF 144 (228)
T ss_pred CCCEEEEcccCCCH--HHHHHHHc-C--CCE-EEEEeCCHHHHHH--HHhcCCCeeEeecCCcccCCH--hHcCCCceee
Confidence 45689999999999 66666653 1 235 6666777643322 222 2211 1 11111122 2333344578
Q ss_pred cEEEEeCCc
Q 027826 116 DFLVVDSRR 124 (218)
Q Consensus 116 DfVFIDa~K 124 (218)
|++|+=-.+
T Consensus 145 DvsfiS~~~ 153 (228)
T TIGR00478 145 DVSFISLIS 153 (228)
T ss_pred eEEEeehHh
Confidence 888886543
No 207
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=93.47 E-value=0.11 Score=44.88 Aligned_cols=101 Identities=13% Similarity=0.174 Sum_probs=62.2
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCceEEEEcCCCchhhcCCCCCccE
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFSPQVITGEADDEELMDGLVDIDF 117 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~i~~i~GdA~~~e~L~~l~~fDf 117 (218)
..+-|+|||+|+++|. -+|.-|++ |...+..-+.+|...++.+.+. ..|++|.+..-|. +.+=..||+
T Consensus 77 tVrgkrVLd~gagsgL--vaIAaa~a----GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~-----~g~~~~~Dl 145 (218)
T COG3897 77 TVRGKRVLDLGAGSGL--VAIAAARA----GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADL-----IGSPPAFDL 145 (218)
T ss_pred ccccceeeecccccCh--HHHHHHHh----hhHHHHhcCCChHHHHHhhcchhhccceeEEeeccc-----cCCCcceeE
Confidence 4578999999999998 66544443 3333444466687766666554 6677799988888 332237888
Q ss_pred EEEeC---CccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc
Q 027826 118 LVVDS---RRKDFARVLRLA-NLSSRGAVLVCKNAYSRND 153 (218)
Q Consensus 118 VFIDa---~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~ 153 (218)
++.-= +|....+...+. .+..+|..|+ +.-+|.
T Consensus 146 ~LagDlfy~~~~a~~l~~~~~~l~~~g~~vl---vgdp~R 182 (218)
T COG3897 146 LLAGDLFYNHTEADRLIPWKDRLAEAGAAVL---VGDPGR 182 (218)
T ss_pred EEeeceecCchHHHHHHHHHHHHHhCCCEEE---EeCCCC
Confidence 76532 244444555544 4554455554 445554
No 208
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=93.46 E-value=0.42 Score=39.72 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHH--H-HHHhcCC----CCcEEEEEEcCCccHHHHHH-HHhhCCCc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSV--G-LAVASRH----TGGRHVCLVPDERSRSEYVH-ALGEAGFS 95 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsai--g-lA~a~~~----~~G~vitt~e~~~~~~~~a~-~~~~agl~ 95 (218)
.+.|..+..|-.|+...+-..+|+-=||+|- ..| + ++....+ ...+++. .+.+++....++ ++..+|+.
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGt--iliEaa~~~~~~~~~~~~~~~~~~g-~Di~~~~v~~a~~N~~~ag~~ 87 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGT--ILIEAALMGANIPPLNDINELKIIG-SDIDPKAVRGARENLKAAGVE 87 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSH--HHHHHHHHHTTTSTTTH-CH--EEE-EESSHHHHHHHHHHHHHTT-C
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCH--HHHHHHHHhhCcccccccccccEEe-cCCCHHHHHHHHHHHHhcccC
Confidence 5778889999999888877899997777775 222 1 1111110 0123344 467777766665 45689998
Q ss_pred --eEEEEcCCCchhhcCCCCCccEEEEeCC-----------ccCcHHHHHHh-cCCCCCeEEEEe
Q 027826 96 --PQVITGEADDEELMDGLVDIDFLVVDSR-----------RKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 96 --i~~i~GdA~~~e~L~~l~~fDfVFIDa~-----------K~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
|++..+|+ .+.-..-.++|.|..|-- +..|..+++.+ +++++..++++.
T Consensus 88 ~~i~~~~~D~--~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 88 DYIDFIQWDA--RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp GGEEEEE--G--GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred CceEEEecch--hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 99999999 654312238999999932 35677777777 544435555443
No 209
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=93.37 E-value=0.35 Score=43.77 Aligned_cols=84 Identities=20% Similarity=0.101 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHH-HHHHhhCCCc--eEEEEcC
Q 027826 26 ESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY-VHALGEAGFS--PQVITGE 102 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~-a~~~~~agl~--i~~i~Gd 102 (218)
.|++.+-|..=+.....-.|||||.|+|- -|..|.++ +.+|| .+|.|+.++.. .+...-...+ .++++||
T Consensus 43 Np~v~~~I~~ka~~k~tD~VLEvGPGTGn--LT~~lLe~----~kkVv-A~E~Dprmvael~krv~gtp~~~kLqV~~gD 115 (315)
T KOG0820|consen 43 NPLVIDQIVEKADLKPTDVVLEVGPGTGN--LTVKLLEA----GKKVV-AVEIDPRMVAELEKRVQGTPKSGKLQVLHGD 115 (315)
T ss_pred CHHHHHHHHhccCCCCCCEEEEeCCCCCH--HHHHHHHh----cCeEE-EEecCcHHHHHHHHHhcCCCccceeeEEecc
Confidence 46666666666777778899999999998 66566654 34645 46888876543 3444434434 8999999
Q ss_pred CCchhhcCCCCCccEEEE
Q 027826 103 ADDEELMDGLVDIDFLVV 120 (218)
Q Consensus 103 A~~~e~L~~l~~fDfVFI 120 (218)
. +.. .++-||.+.-
T Consensus 116 ~--lK~--d~P~fd~cVs 129 (315)
T KOG0820|consen 116 F--LKT--DLPRFDGCVS 129 (315)
T ss_pred c--ccC--CCcccceeec
Confidence 9 432 2335565553
No 210
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=93.37 E-value=0.052 Score=48.09 Aligned_cols=15 Identities=20% Similarity=0.029 Sum_probs=13.1
Q ss_pred CCCeEEEeCcCcchH
Q 027826 41 DARLIVETWSHGGAT 55 (218)
Q Consensus 41 ~ak~ILEiGt~~Gyi 55 (218)
+.++|||+|+|+|..
T Consensus 86 ~~~~vlELGsGtglv 100 (248)
T KOG2793|consen 86 KYINVLELGSGTGLV 100 (248)
T ss_pred cceeEEEecCCccHH
Confidence 677999999999983
No 211
>PRK13699 putative methylase; Provisional
Probab=92.92 E-value=0.099 Score=45.30 Aligned_cols=48 Identities=19% Similarity=0.354 Sum_probs=34.5
Q ss_pred eEEEEcCCCchhhcCCCC--CccEEEEeC--------------CccCcHHHH----HHh-cCCCCCeEEEE
Q 027826 96 PQVITGEADDEELMDGLV--DIDFLVVDS--------------RRKDFARVL----RLA-NLSSRGAVLVC 145 (218)
Q Consensus 96 i~~i~GdA~~~e~L~~l~--~fDfVFIDa--------------~K~~Y~~~~----~~~-~L~~~GgvIV~ 145 (218)
+++++||+ ++.|+.++ ++|+||.|- ....|.+++ +.+ +++++||++++
T Consensus 2 ~~l~~gD~--le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNC--IDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechH--HHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 47899999 99999995 999999992 123344544 333 56666888875
No 212
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=92.71 E-value=0.95 Score=41.81 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~-i~~i~G 101 (218)
.++....++-..++.-..-.+||.+=..-|= =|..||..+...++. |+..+.++.+.... +++++.|+. +.++..
T Consensus 139 ~vQd~sS~l~a~~L~p~pge~VlD~cAAPGG--KTthla~~~~~~~~i-V~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~ 215 (355)
T COG0144 139 YVQDEASQLPALVLDPKPGERVLDLCAAPGG--KTTHLAELMENEGAI-VVAVDVSPKRLKRLRENLKRLGVRNVIVVNK 215 (355)
T ss_pred EEcCHHHHHHHHHcCCCCcCEEEEECCCCCC--HHHHHHHhcCCCCce-EEEEcCCHHHHHHHHHHHHHcCCCceEEEec
Confidence 4566777777777777777899997666664 666788887654444 57778888776654 566899999 788888
Q ss_pred CCCchhhcCCCC---CccEEEEeCCccCc--------------H-----------HHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 102 EADDEELMDGLV---DIDFLVVDSRRKDF--------------A-----------RVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~~l~---~fDfVFIDa~K~~Y--------------~-----------~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
|+ ........ +||-|++||-=+.. + +.++.+ .++++||++|.......-
T Consensus 216 d~--~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 216 DA--RRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred cc--ccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 88 54433332 59999999742110 1 122222 566779999999986655
Q ss_pred c
Q 027826 153 D 153 (218)
Q Consensus 153 ~ 153 (218)
.
T Consensus 294 e 294 (355)
T COG0144 294 E 294 (355)
T ss_pred h
Confidence 3
No 213
>KOG2730 consensus Methylase [General function prediction only]
Probab=92.54 E-value=0.19 Score=44.23 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=71.0
Q ss_pred CCHH-HHHHHHHHHHhc-CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCc--eEEE
Q 027826 25 HESG-VAELVSAMAAGW-DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFS--PQVI 99 (218)
Q Consensus 25 i~p~-~g~fL~~L~~~~-~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~--i~~i 99 (218)
++|+ .+.++..-+... ++..|+..=||.| |-+|=+|.- +.. |..+|.+|.+...|+.+. -+|+. |+|+
T Consensus 76 vTpe~ia~~iA~~v~~~~~~~~iidaf~g~g--Gntiqfa~~----~~~-VisIdiDPikIa~AkhNaeiYGI~~rItFI 148 (263)
T KOG2730|consen 76 VTPEKIAEHIANRVVACMNAEVIVDAFCGVG--GNTIQFALQ----GPY-VIAIDIDPVKIACARHNAEVYGVPDRITFI 148 (263)
T ss_pred eccHHHHHHHHHHHHHhcCcchhhhhhhcCC--chHHHHHHh----CCe-EEEEeccHHHHHHHhccceeecCCceeEEE
Confidence 4444 456666555544 9999999656555 366555542 335 667899999888888775 69998 9999
Q ss_pred EcCCCchhhcCCCC----CccEEEEeCCccCcHHHHHH
Q 027826 100 TGEADDEELMDGLV----DIDFLVVDSRRKDFARVLRL 133 (218)
Q Consensus 100 ~GdA~~~e~L~~l~----~fDfVFIDa~K~~Y~~~~~~ 133 (218)
.||- +++...|+ -+|+||.-.. -.|+.|+..
T Consensus 149 ~GD~--ld~~~~lq~~K~~~~~vf~spp-wggp~y~~~ 183 (263)
T KOG2730|consen 149 CGDF--LDLASKLKADKIKYDCVFLSPP-WGGPSYLRA 183 (263)
T ss_pred echH--HHHHHHHhhhhheeeeeecCCC-CCCcchhhh
Confidence 9999 99888774 5889998764 566766655
No 214
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=92.48 E-value=1.1 Score=39.84 Aligned_cols=107 Identities=13% Similarity=0.038 Sum_probs=58.4
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEE--EEcCCCchhhcCCCCCcc
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQV--ITGEADDEELMDGLVDID 116 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~--i~GdA~~~e~L~~l~~fD 116 (218)
..+|++||++|+|.| |++|-+...-+ .-.-++.+|.++.+.+.++.+.+..-...- ..... ......+.+.|
T Consensus 31 ~f~P~~vLD~GsGpG---ta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~D 104 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPG---TALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVL--YRDFLPFPPDD 104 (274)
T ss_pred CCCCceEEEecCChH---HHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhh--hcccccCCCCc
Confidence 358999999999966 56554443333 223377788999888888877543332111 11111 11112223447
Q ss_pred EEEEeCC-----ccCcHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 117 FLVVDSR-----RKDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 117 fVFIDa~-----K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
+|..--- ...-.++++.+ .... +-+|++++-.-.|
T Consensus 105 Lvi~s~~L~EL~~~~r~~lv~~LW~~~~-~~LVlVEpGt~~G 145 (274)
T PF09243_consen 105 LVIASYVLNELPSAARAELVRSLWNKTA-PVLVLVEPGTPAG 145 (274)
T ss_pred EEEEehhhhcCCchHHHHHHHHHHHhcc-CcEEEEcCCChHH
Confidence 7765321 12334444444 3344 4788888766655
No 215
>PHA01634 hypothetical protein
Probab=92.39 E-value=0.76 Score=37.41 Aligned_cols=83 Identities=16% Similarity=0.114 Sum_probs=51.5
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcC-CCCCccEE
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMD-GLVDIDFL 118 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~-~l~~fDfV 118 (218)
.+-|+|+.||.+.|- |+|.++.. |++.|..+|.++......+.+.+.. .+...|-..+..+ ..++||..
T Consensus 27 vk~KtV~dIGA~iGd--SaiYF~l~----GAK~Vva~E~~~kl~k~~een~k~n----nI~DK~v~~~eW~~~Y~~~Di~ 96 (156)
T PHA01634 27 VYQRTIQIVGADCGS--SALYFLLR----GASFVVQYEKEEKLRKKWEEVCAYF----NICDKAVMKGEWNGEYEDVDIF 96 (156)
T ss_pred ecCCEEEEecCCccc--hhhHHhhc----CccEEEEeccCHHHHHHHHHHhhhh----eeeeceeecccccccCCCcceE
Confidence 366899999999999 99987763 4555777788887665554332221 1222220011122 34699999
Q ss_pred EEeCCccCcHHHHHHh
Q 027826 119 VVDSRRKDFARVLRLA 134 (218)
Q Consensus 119 FIDa~K~~Y~~~~~~~ 134 (218)
-||++ ...+.++.-
T Consensus 97 ~iDCe--GCE~~l~v~ 110 (156)
T PHA01634 97 VMDCE--GCEEKLNVS 110 (156)
T ss_pred EEEcc--chHHhcCHH
Confidence 99997 455444443
No 216
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=92.04 E-value=0.41 Score=41.45 Aligned_cols=66 Identities=24% Similarity=0.206 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCC
Q 027826 30 AELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEA 103 (218)
Q Consensus 30 g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA 103 (218)
+.|-+++.+-.. -....+|+|+|. -+.--|.+ .-| |..+|.+|.++..++.+ .-.|+. +++++|||
T Consensus 22 avF~~ai~~va~-d~~~DLGaGsGi--Ls~~Aa~~----A~r-ViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA 89 (252)
T COG4076 22 AVFTSAIAEVAE-DTFADLGAGSGI--LSVVAAHA----AER-VIAIEKDPKRARLAEENLHVPGDVNWEVVVGDA 89 (252)
T ss_pred HHHHHHHHHHhh-hceeeccCCcch--HHHHHHhh----hce-EEEEecCcHHHHHhhhcCCCCCCcceEEEeccc
Confidence 444444444444 678899999997 22111222 236 66679999998888755 456666 99999999
No 217
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.02 E-value=0.042 Score=48.67 Aligned_cols=104 Identities=17% Similarity=0.188 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcC---CCeEEEeCcCcchHHHHHH-HHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCc
Q 027826 30 AELVSAMAAGWD---ARLIVETWSHGGATATSVG-LAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADD 105 (218)
Q Consensus 30 g~fL~~L~~~~~---ak~ILEiGt~~GyiGsaig-lA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~ 105 (218)
=++|..++.-.+ .+++|.+||+||..|-.|= ||. + ++-++.++.+.+.| ..+..+ -.+.+.++
T Consensus 111 P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~-------~-ltGvDiS~nMl~kA--~eKg~Y-D~L~~Aea-- 177 (287)
T COG4976 111 PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMAD-------R-LTGVDISENMLAKA--HEKGLY-DTLYVAEA-- 177 (287)
T ss_pred HHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHh-------h-ccCCchhHHHHHHH--Hhccch-HHHHHHHH--
Confidence 345655555443 6799999999999333321 222 3 55566766554433 233333 35566777
Q ss_pred hhhcCCCC--CccEEEEeCCccCcHHHHHHh-----cCCCCCeEEEEeC
Q 027826 106 EELMDGLV--DIDFLVVDSRRKDFARVLRLA-----NLSSRGAVLVCKN 147 (218)
Q Consensus 106 ~e~L~~l~--~fDfVFIDa~K~~Y~~~~~~~-----~L~~~GgvIV~DN 147 (218)
...++.++ +||+|- =+|---|.--++-+ .++.+||++++--
T Consensus 178 ~~Fl~~~~~er~DLi~-AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 178 VLFLEDLTQERFDLIV-AADVLPYLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred HHHhhhccCCcccchh-hhhHHHhhcchhhHHHHHHHhcCCCceEEEEe
Confidence 77787654 899874 34444555444443 4455599998754
No 218
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=91.91 E-value=0.59 Score=42.79 Aligned_cols=102 Identities=16% Similarity=0.246 Sum_probs=68.9
Q ss_pred HHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCC-CcEEEEEEcCCccHHHHHHHH-h--hCCCc---eEEEEcCCCchh
Q 027826 35 AMAAGWDARLIVETWSHGGATATSVGLAVASRHT-GGRHVCLVPDERSRSEYVHAL-G--EAGFS---PQVITGEADDEE 107 (218)
Q Consensus 35 ~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~-~G~vitt~e~~~~~~~~a~~~-~--~agl~---i~~i~GdA~~~e 107 (218)
.|++..+|+++|=||-+-|= - +-.-+++. =+. +...|.+...++..+.+ . ..|++ +.++.||. ..
T Consensus 115 ~l~s~~npkkvlVVgggDgg---v--lrevikH~~ve~-i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG--~~ 186 (337)
T KOG1562|consen 115 ALCSHPNPKKVLVVGGGDGG---V--LREVIKHKSVEN-ILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDG--FL 186 (337)
T ss_pred ccccCCCCCeEEEEecCCcc---c--eeeeeccccccc-eeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccH--HH
Confidence 36788899999999887552 0 22222321 233 56667777766665544 2 56776 99999999 99
Q ss_pred hcCCCC--CccEEEEeCCcc------CcH-HHHHHh--cCCCCCeEEEE
Q 027826 108 LMDGLV--DIDFLVVDSRRK------DFA-RVLRLA--NLSSRGAVLVC 145 (218)
Q Consensus 108 ~L~~l~--~fDfVFIDa~K~------~Y~-~~~~~~--~L~~~GgvIV~ 145 (218)
.++.++ +||.|..|.+-. .|. .||+.+ .|++ +|+++.
T Consensus 187 fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~-dgv~~~ 234 (337)
T KOG1562|consen 187 FLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKG-DGVVCT 234 (337)
T ss_pred HHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCC-CcEEEE
Confidence 999883 999999998743 233 367776 4544 787653
No 219
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=91.89 E-value=1.7 Score=38.16 Aligned_cols=97 Identities=19% Similarity=0.136 Sum_probs=55.6
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh--hCCCceEEEEcCC-CchhhcCCCCCccEE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG--EAGFSPQVITGEA-DDEELMDGLVDIDFL 118 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~--~agl~i~~i~GdA-~~~e~L~~l~~fDfV 118 (218)
-.+||=+|.++|. |.-.++--..+ +|. |..+|..+....---.++ +-+ |=-|.+|| .+.+.-.-++..|+|
T Consensus 74 gskVLYLGAasGT--TVSHvSDIvg~-~G~-VYaVEfs~r~~rdL~~la~~R~N--IiPIl~DAr~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 74 GSKVLYLGAASGT--TVSHVSDIVGP-DGV-VYAVEFSPRSMRDLLNLAKKRPN--IIPILEDARHPEKYRMLVEMVDVI 147 (229)
T ss_dssp T-EEEEETTTTSH--HHHHHHHHHTT-TSE-EEEEESSHHHHHHHHHHHHHSTT--EEEEES-TTSGGGGTTTS--EEEE
T ss_pred CCEEEEecccCCC--ccchhhhccCC-CCc-EEEEEecchhHHHHHHHhccCCc--eeeeeccCCChHHhhcccccccEE
Confidence 4699999999886 55567776654 688 777888874321111222 333 55678999 122222223599999
Q ss_pred EEeCCccCcHHHHHH-h-cCCCCCeEEE
Q 027826 119 VVDSRRKDFARVLRL-A-NLSSRGAVLV 144 (218)
Q Consensus 119 FIDa~K~~Y~~~~~~-~-~L~~~GgvIV 144 (218)
|.|-...+-.+.+-. + ..+++||.++
T Consensus 148 ~~DVaQp~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 148 FQDVAQPDQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp EEE-SSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred EecCCChHHHHHHHHHHHhhccCCcEEE
Confidence 999775555555444 4 3444477554
No 220
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=91.67 E-value=0.27 Score=40.15 Aligned_cols=78 Identities=14% Similarity=0.109 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhc-----CCCeEEEeCcCcchHHHHHHHHHhcCCC---CcEEEEEEcCCccHHHHHHHHhhCCCc-eEE
Q 027826 28 GVAELVSAMAAGW-----DARLIVETWSHGGATATSVGLAVASRHT---GGRHVCLVPDERSRSEYVHALGEAGFS-PQV 98 (218)
Q Consensus 28 ~~g~fL~~L~~~~-----~ak~ILEiGt~~GyiGsaiglA~a~~~~---~G~vitt~e~~~~~~~~a~~~~~agl~-i~~ 98 (218)
..-.+..++-+.. +..++|++|++.|- +...+.+. .++ +..++..+. ..+. +..
T Consensus 5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGG------ws~~~~~~~~~~~~-v~avDl~~~----------~~~~~~~~ 67 (181)
T PF01728_consen 5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGG------WSQVLLQRGGPAGR-VVAVDLGPM----------DPLQNVSF 67 (181)
T ss_dssp HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSH------HHHHHHTSTTTEEE-EEEEESSST----------GS-TTEEB
T ss_pred HHHHHHHHHHHCCCCCcccccEEEEcCCcccc------eeeeeeecccccce-EEEEecccc----------ccccceee
Confidence 3344455554444 45899999999996 22222222 366 444555553 1112 444
Q ss_pred EEcCCCc---hhhcCC-C----CCccEEEEeC
Q 027826 99 ITGEADD---EELMDG-L----VDIDFLVVDS 122 (218)
Q Consensus 99 i~GdA~~---~e~L~~-l----~~fDfVFIDa 122 (218)
+.||.+. .+.+.+ + .++|+|+.|+
T Consensus 68 i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~ 99 (181)
T PF01728_consen 68 IQGDITNPENIKDIRKLLPESGEKFDLVLSDM 99 (181)
T ss_dssp TTGGGEEEEHSHHGGGSHGTTTCSESEEEE--
T ss_pred eecccchhhHHHhhhhhccccccCcceecccc
Confidence 4555411 112222 1 3899999999
No 221
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=91.67 E-value=0.82 Score=37.02 Aligned_cols=70 Identities=10% Similarity=0.065 Sum_probs=44.8
Q ss_pred EcCCccHHHHHHH-Hh--hCC-Cc-eEEEEcCCCchhhcCCCC-CccEEEEeCCc---cCcHHHHHHh-cCCCCCeEEEE
Q 027826 76 VPDERSRSEYVHA-LG--EAG-FS-PQVITGEADDEELMDGLV-DIDFLVVDSRR---KDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 76 ~e~~~~~~~~a~~-~~--~ag-l~-i~~i~GdA~~~e~L~~l~-~fDfVFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
++.++++.+.|+. .. ..+ .. |+++.||+ .+ |+.-+ +||+|++-..- .+-.+.++.+ ++++|||.+++
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~--~~-lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA--ID-LPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEEEech--hh-CCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 4566777666642 22 222 23 99999999 65 45333 89999886532 3455667776 66667998876
Q ss_pred eCC
Q 027826 146 KNA 148 (218)
Q Consensus 146 DNv 148 (218)
-+.
T Consensus 80 ~d~ 82 (160)
T PLN02232 80 LDF 82 (160)
T ss_pred EEC
Confidence 544
No 222
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=91.33 E-value=0.6 Score=34.37 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=18.1
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcE
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGR 71 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~ 71 (218)
...+||+||=||+++|| |-+--++.|... +..
T Consensus 35 ~~~GpK~VLViGaStGy-GLAsRIa~aFg~-gA~ 66 (78)
T PF12242_consen 35 KINGPKKVLVIGASTGY-GLASRIAAAFGA-GAD 66 (78)
T ss_dssp --TS-SEEEEES-SSHH-HHHHHHHHHHCC---E
T ss_pred CCCCCceEEEEecCCcc-cHHHHHHHHhcC-CCC
Confidence 34789999999999998 555334454432 444
No 223
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=91.12 E-value=0.1 Score=41.41 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=35.2
Q ss_pred eEEEEcCCCchhhcCCCC-CccEEEEeCCc-c-----CcHHHHHHh-cCCCCCeEEEEeCC
Q 027826 96 PQVITGEADDEELMDGLV-DIDFLVVDSRR-K-----DFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 96 i~~i~GdA~~~e~L~~l~-~fDfVFIDa~K-~-----~Y~~~~~~~-~L~~~GgvIV~DNv 148 (218)
.++..||| .+.|+++. .+|.+|.|+-- . --.++|..+ ++.++||++++-.+
T Consensus 33 L~L~~gDa--~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~ 91 (124)
T PF05430_consen 33 LTLWFGDA--REMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS 91 (124)
T ss_dssp EEEEES-H--HHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--
T ss_pred EEEEEcHH--HHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec
Confidence 67899999 99999986 99999999842 2 125688887 66666999976544
No 224
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=90.71 E-value=1.2 Score=39.29 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=40.7
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHH----hhCCC-----c-eEEEEcCCCchhhcCCC
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HAL----GEAGF-----S-PQVITGEADDEELMDGL 112 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~----~~agl-----~-i~~i~GdA~~~e~L~~l 112 (218)
+||...+|-|- -++=||. + |++ |+-+|.+|-.+..- ..+ ..... . |+++++|+ .+.|+.-
T Consensus 78 ~VLDaTaGLG~--Da~vlA~-~---G~~-V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~--~~~L~~~ 148 (234)
T PF04445_consen 78 SVLDATAGLGR--DAFVLAS-L---GCK-VTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA--LEYLRQP 148 (234)
T ss_dssp -EEETT-TTSH--HHHHHHH-H---T---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C--CCHCCCH
T ss_pred EEEECCCcchH--HHHHHHc-c---CCe-EEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH--HHHHhhc
Confidence 89997777775 5554553 2 567 77789999765443 223 23333 1 99999999 9999932
Q ss_pred C-CccEEEEeCC
Q 027826 113 V-DIDFLVVDSR 123 (218)
Q Consensus 113 ~-~fDfVFIDa~ 123 (218)
. +||.|++|--
T Consensus 149 ~~s~DVVY~DPM 160 (234)
T PF04445_consen 149 DNSFDVVYFDPM 160 (234)
T ss_dssp SS--SEEEE--S
T ss_pred CCCCCEEEECCC
Confidence 3 9999999964
No 225
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=90.50 E-value=1 Score=38.54 Aligned_cols=97 Identities=15% Similarity=0.204 Sum_probs=53.5
Q ss_pred EEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCc--eEEEEcCCCchhhcCCCCCccEEEEe
Q 027826 45 IVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAGFS--PQVITGEADDEELMDGLVDIDFLVVD 121 (218)
Q Consensus 45 ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~--i~~i~GdA~~~e~L~~l~~fDfVFID 121 (218)
|..|||==|| -.++|...-. --+++.+ +.++.-.+ +.+++.++|+. |+++.||. ++.|+.-+..|.|.|=
T Consensus 1 vaDIGtDHgy--Lpi~L~~~~~--~~~~ia~-DI~~gpL~~A~~~i~~~~l~~~i~~rlgdG--L~~l~~~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGY--LPIYLLKNGK--APKAIAV-DINPGPLEKAKENIAKYGLEDRIEVRLGDG--LEVLKPGEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTH--HHHHHHHTTS--EEEEEEE-ESSHHHHHHHHHHHHHTT-TTTEEEEE-SG--GGG--GGG---EEEEE
T ss_pred CceeccchhH--HHHHHHhcCC--CCEEEEE-eCCHHHHHHHHHHHHHcCCcccEEEEECCc--ccccCCCCCCCEEEEe
Confidence 5689999999 4555555322 1254444 56665444 44566899988 99999999 8877654458999997
Q ss_pred CCcc-CcHHHHHHh--cCCCCCeEEEEeCC
Q 027826 122 SRRK-DFARVLRLA--NLSSRGAVLVCKNA 148 (218)
Q Consensus 122 a~K~-~Y~~~~~~~--~L~~~GgvIV~DNv 148 (218)
+-=+ .=.+.++.. .+.+..=+|+..|.
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lILqP~~ 103 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLILQPNT 103 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEEEESS
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEEeCCC
Confidence 6522 223344443 23232347777664
No 226
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.27 E-value=0.74 Score=38.34 Aligned_cols=90 Identities=11% Similarity=0.052 Sum_probs=62.0
Q ss_pred CHHH-HHHHHHHHHhcC---CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCceEEEE
Q 027826 26 ESGV-AELVSAMAAGWD---ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQVIT 100 (218)
Q Consensus 26 ~p~~-g~fL~~L~~~~~---ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~i~~i~ 100 (218)
+|+- +..++++-...+ -|+++.+||+.|. -++ |-++.. .+.+.-++.+|+..+.... ..++.++|+++.
T Consensus 29 ~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGm--Ls~--a~sm~~--~e~vlGfDIdpeALEIf~rNaeEfEvqidlLq 102 (185)
T KOG3420|consen 29 RPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGM--LSI--AFSMPK--NESVLGFDIDPEALEIFTRNAEEFEVQIDLLQ 102 (185)
T ss_pred cHHHHHHHHHHHHhhhccccCcchhhhcCchhh--hHH--HhhcCC--CceEEeeecCHHHHHHHhhchHHhhhhhheee
Confidence 4444 455666655554 7999999999998 333 333343 3446667888887666544 457888889998
Q ss_pred cCCCchhhcCCCCCccEEEEeCC
Q 027826 101 GEADDEELMDGLVDIDFLVVDSR 123 (218)
Q Consensus 101 GdA~~~e~L~~l~~fDfVFIDa~ 123 (218)
-+. ++..+....||-+.||-.
T Consensus 103 cdi--ldle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 103 CDI--LDLELKGGIFDTAVINPP 123 (185)
T ss_pred eec--cchhccCCeEeeEEecCC
Confidence 888 665555568999999854
No 227
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=89.64 E-value=1 Score=39.85 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHhc---CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEE
Q 027826 24 SHESGVAELVSAMAAGW---DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVI 99 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~---~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i 99 (218)
.++|++.--=..++... .-|+||=+|=-= . ++|++|.... ..+ |+.++.++...+.-+.. .+.|+.|+.+
T Consensus 24 ~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDD-L--tSlA~al~~~--~~~-I~VvDiDeRll~fI~~~a~~~gl~i~~~ 97 (243)
T PF01861_consen 24 YATPETTLRRAALMAERGDLEGKRILFLGDDD-L--TSLALALTGL--PKR-ITVVDIDERLLDFINRVAEEEGLPIEAV 97 (243)
T ss_dssp -B-HHHHHHHHHHHHHTT-STT-EEEEES-TT----HHHHHHHHT----SE-EEEE-S-HHHHHHHHHHHHHHT--EEEE
T ss_pred cccHHHHHHHHHHHHhcCcccCCEEEEEcCCc-H--HHHHHHhhCC--CCe-EEEEEcCHHHHHHHHHHHHHcCCceEEE
Confidence 46777653333333333 468999987432 2 5665554333 346 88889998777665544 5889999999
Q ss_pred EcCCCchhhcCC-C-CCccEEEEeCCccCcHHHHHHh------cCCCCCeEEEE
Q 027826 100 TGEADDEELMDG-L-VDIDFLVVDSRRKDFARVLRLA------NLSSRGAVLVC 145 (218)
Q Consensus 100 ~GdA~~~e~L~~-l-~~fDfVFIDa~K~~Y~~~~~~~------~L~~~GgvIV~ 145 (218)
+-|. .+-||. + +.||.+|.|-- .-++=+.++ -|..+|+.+.+
T Consensus 98 ~~Dl--R~~LP~~~~~~fD~f~TDPP--yT~~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 98 HYDL--RDPLPEELRGKFDVFFTDPP--YTPEGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp ---T--TS---TTTSS-BSEEEE-----SSHHHHHHHHHHHHHTB-STT-EEEE
T ss_pred Eecc--cccCCHHHhcCCCEEEeCCC--CCHHHHHHHHHHHHHHhCCCCceEEE
Confidence 9999 999986 4 49999999964 444555553 45555755433
No 228
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=89.61 E-value=2.3 Score=40.36 Aligned_cols=123 Identities=14% Similarity=0.087 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHH-HHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG-LAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaig-lA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~i~~i~G 101 (218)
.-.|..-.+=+.+.++.+++.++= .++|. +|+. .-..+.+.++++|++...--......+ .+.+.|++..++..
T Consensus 74 ~~nPt~~~le~~iaal~ga~~~l~--fsSGm--aA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~ 149 (409)
T KOG0053|consen 74 SGNPTRDVLESGIAALEGAAHALL--FSSGM--AAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDV 149 (409)
T ss_pred CCCCchHHHHHHHHHHhCCceEEE--ecccH--HHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeech
Confidence 445777777788899999999887 45565 4443 223334557887777543333444444 44588888888876
Q ss_pred CCCchhhcCC-CC-CccEEEEeCCccCcHHHHHH--h-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMDG-LV-DIDFLVVDSRRKDFARVLRL--A-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~~-l~-~fDfVFIDa~K~~Y~~~~~~--~-~L~-~~GgvIV~DNvl~~G 152 (218)
+- .+-+.. .+ ..++||+-.----+.+..+. + ++. ++|-+||+||++-.+
T Consensus 150 ~~--~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p 204 (409)
T KOG0053|consen 150 DD--LKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSP 204 (409)
T ss_pred hh--HHHHHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcc
Confidence 66 554444 44 49999999865444443333 2 443 559999999998665
No 229
>PRK11524 putative methyltransferase; Provisional
Probab=88.98 E-value=0.33 Score=43.15 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.5
Q ss_pred eEEEEcCCCchhhcCCCC--CccEEEEeCC
Q 027826 96 PQVITGEADDEELMDGLV--DIDFLVVDSR 123 (218)
Q Consensus 96 i~~i~GdA~~~e~L~~l~--~fDfVFIDa~ 123 (218)
.++++||+ ++.++.++ +||+||+|-.
T Consensus 9 ~~i~~gD~--~~~l~~l~~~siDlIitDPP 36 (284)
T PRK11524 9 KTIIHGDA--LTELKKIPSESVDLIFADPP 36 (284)
T ss_pred CEEEeccH--HHHHHhcccCcccEEEECCC
Confidence 57899999 99998885 8999999953
No 230
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.66 E-value=0.63 Score=43.74 Aligned_cols=126 Identities=16% Similarity=0.127 Sum_probs=64.2
Q ss_pred hhhHHHHHHhhhccCCCCCHHHHHHHHHHH------HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCcc
Q 027826 8 ETASKAYIDTVKSCELSHESGVAELVSAMA------AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERS 81 (218)
Q Consensus 8 ~~a~~ayl~~l~~~~~~i~p~~g~fL~~L~------~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~ 81 (218)
+.+.+|||.+.-+.. -|.+-+.|- --..|++||++|-|-| |.+|-+...-+ +=+-.+++|.++.
T Consensus 80 dm~V~Ayias~lp~~------Yasv~asL~~L~~~~~dfapqsiLDvG~GPg---tgl~A~n~i~P-dl~sa~ile~sp~ 149 (484)
T COG5459 80 DMAVKAYIASRLPQT------YASVRASLDELQKRVPDFAPQSILDVGAGPG---TGLWALNDIWP-DLKSAVILEASPA 149 (484)
T ss_pred hHHHHHHHHHhhhHH------HHHHHHHHHHHHHhCCCcCcchhhccCCCCc---hhhhhhcccCC-CchhhhhhccCHH
Confidence 456778887754322 233322222 2357999999888766 45442322222 2222456677765
Q ss_pred HHHHHHHHh-hCCCc-eEEEEcCCCchhhcCCC---CCccEEEE------eCCccCcHHHHHHh-cCCCCCeEEEE
Q 027826 82 RSEYVHALG-EAGFS-PQVITGEADDEELMDGL---VDIDFLVV------DSRRKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 82 ~~~~a~~~~-~agl~-i~~i~GdA~~~e~L~~l---~~fDfVFI------Da~K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
....-..+. ....+ ..-..+|. .+-.-.+ +.|+++.+ |.....-..+++.+ .++.+||.+|.
T Consensus 150 lrkV~~tl~~nv~t~~td~r~s~v--t~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi 223 (484)
T COG5459 150 LRKVGDTLAENVSTEKTDWRASDV--TEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVI 223 (484)
T ss_pred HHHHHHHHHhhcccccCCCCCCcc--chhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence 443333332 23332 22244444 2221122 36777654 44433444577777 55555888775
No 231
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=87.73 E-value=2.3 Score=37.75 Aligned_cols=81 Identities=15% Similarity=0.033 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcC--CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCC
Q 027826 27 SGVAELVSAMAAGWD--ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEAD 104 (218)
Q Consensus 27 p~~g~fL~~L~~~~~--ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~ 104 (218)
+-...-|..| .+-. +.-||+|||++|.+|+. +.+ .|+..+-++..+.+.+.|.. .+ ++-+++.+|-
T Consensus 35 em~eRaLELL-alp~~~~~~iLDIGCGsGLSg~v------L~~-~Gh~wiGvDiSpsML~~a~~-~e--~egdlil~DM- 102 (270)
T KOG1541|consen 35 EMAERALELL-ALPGPKSGLILDIGCGSGLSGSV------LSD-SGHQWIGVDISPSMLEQAVE-RE--LEGDLILCDM- 102 (270)
T ss_pred HHHHHHHHHh-hCCCCCCcEEEEeccCCCcchhe------ecc-CCceEEeecCCHHHHHHHHH-hh--hhcCeeeeec-
Confidence 3344444444 3444 88999999999994433 233 46878888999998777653 11 1125677777
Q ss_pred chhhcCCCC-CccEEEE
Q 027826 105 DEELMDGLV-DIDFLVV 120 (218)
Q Consensus 105 ~~e~L~~l~-~fDfVFI 120 (218)
-+-||--+ +||=|..
T Consensus 103 -G~GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 103 -GEGLPFRPGTFDGVIS 118 (270)
T ss_pred -CCCCCCCCCccceEEE
Confidence 66666544 8887653
No 232
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=87.54 E-value=3.7 Score=38.10 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=62.8
Q ss_pred CCeEEEeCcCcchHHHHHH-HHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCCCccEEEE
Q 027826 42 ARLIVETWSHGGATATSVG-LAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDFLVV 120 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaig-lA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~~fDfVFI 120 (218)
-...|.+|.| +|..++ +..-.+ .=+ -+.-..+...+.|+++. .| |+.+.||- ++- .++-|.||+
T Consensus 178 v~~avDvGgG---iG~v~k~ll~~fp--~ik--~infdlp~v~~~a~~~~-~g--V~~v~gdm--fq~---~P~~daI~m 242 (342)
T KOG3178|consen 178 VNVAVDVGGG---IGRVLKNLLSKYP--HIK--GINFDLPFVLAAAPYLA-PG--VEHVAGDM--FQD---TPKGDAIWM 242 (342)
T ss_pred CceEEEcCCc---HhHHHHHHHHhCC--CCc--eeecCHHHHHhhhhhhc-CC--cceecccc--ccc---CCCcCeEEE
Confidence 6889998876 456666 333222 222 22233344455566665 55 78899999 554 446678887
Q ss_pred -----eCCccCcHHHHHHh--cCCCCCeEEEEeCCCCCC
Q 027826 121 -----DSRRKDFARVLRLA--NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 121 -----Da~K~~Y~~~~~~~--~L~~~GgvIV~DNvl~~G 152 (218)
|=.-++...+|+.| -|.+.|.|||.||++-..
T Consensus 243 kWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e 281 (342)
T KOG3178|consen 243 KWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEE 281 (342)
T ss_pred EeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Confidence 33346788899999 455778999999998764
No 233
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=87.43 E-value=1.2 Score=38.87 Aligned_cols=117 Identities=13% Similarity=0.044 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHh-----cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCc-eEEEE
Q 027826 28 GVAELVSAMAAG-----WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFS-PQVIT 100 (218)
Q Consensus 28 ~~g~fL~~L~~~-----~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~-i~~i~ 100 (218)
.+-.||..|... .+..+.|+.|+|.|= - .+.+.-+--..|..+|..+...+.|+... ..+-. .++..
T Consensus 37 gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGR--V----Tk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~ 110 (218)
T PF05891_consen 37 GSRNFLKKLKRGRKPGKPKFNRALDCGAGIGR--V----TKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYC 110 (218)
T ss_dssp HHHHHHHCCCT---------SEEEEET-TTTH--H----HHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEE
T ss_pred HHHHHHHHHHhhcccCCCCcceEEecccccch--h----HHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEe
Confidence 356777776666 368899998888776 2 33221112233777888888777766443 31222 45554
Q ss_pred cCCCchhhcCCCCCccEEEEeCC-----ccCcHHHHHHh--cCCCCCeEEEE-eCCCCCCc
Q 027826 101 GEADDEELMDGLVDIDFLVVDSR-----RKDFARVLRLA--NLSSRGAVLVC-KNAYSRND 153 (218)
Q Consensus 101 GdA~~~e~L~~l~~fDfVFIDa~-----K~~Y~~~~~~~--~L~~~GgvIV~-DNvl~~G~ 153 (218)
--- .+.-|.-..||+|.+==- -++..+||+.| -|.| +|+||+ +|+-..|.
T Consensus 111 ~gL--Q~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~-~G~IvvKEN~~~~~~ 168 (218)
T PF05891_consen 111 VGL--QDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKP-NGVIVVKENVSSSGF 168 (218)
T ss_dssp S-G--GG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEE-EEEEEEEEEEESSSE
T ss_pred cCH--hhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcC-CcEEEEEecCCCCCC
Confidence 444 555565458999998521 13467788888 4656 666554 78877773
No 234
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=86.94 E-value=1.5 Score=41.21 Aligned_cols=71 Identities=17% Similarity=0.410 Sum_probs=46.9
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhh-CCCc--eEEEEcCCCchhh-cCCCCCc
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGE-AGFS--PQVITGEADDEEL-MDGLVDI 115 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~-agl~--i~~i~GdA~~~e~-L~~l~~f 115 (218)
.+-|-||++|+++|. -|. +|.. .|++.|..+|-. ++++.|+.+.+ ..+. |.+|.|.. .++ || ++.
T Consensus 176 F~~kiVlDVGaGSGI-LS~--FAaq---AGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKi--EdieLP--Ek~ 244 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGI-LSF--FAAQ---AGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKI--EDIELP--EKV 244 (517)
T ss_pred cCCcEEEEecCCccH-HHH--HHHH---hCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcc--ccccCc--hhc
Confidence 356889999999997 122 2322 255558887775 58888887754 3444 99999998 542 22 267
Q ss_pred cEEEEe
Q 027826 116 DFLVVD 121 (218)
Q Consensus 116 DfVFID 121 (218)
|.+.-.
T Consensus 245 DviISE 250 (517)
T KOG1500|consen 245 DVIISE 250 (517)
T ss_pred cEEEec
Confidence 776644
No 235
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.52 E-value=6.2 Score=37.40 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcC---------CCeEEEeC-cCcchHHHHHH--HHHhcC-CCCcEEEEEEcCCccHHHHHHH---H-hhC
Q 027826 30 AELVSAMAAGWD---------ARLIVETW-SHGGATATSVG--LAVASR-HTGGRHVCLVPDERSRSEYVHA---L-GEA 92 (218)
Q Consensus 30 g~fL~~L~~~~~---------ak~ILEiG-t~~GyiGsaig--lA~a~~-~~~G~vitt~e~~~~~~~~a~~---~-~~a 92 (218)
..++..|.+..+ .+.|+=+| ||+|= |++. ||.++. ..+|+-|..+..++.+..+... + ...
T Consensus 200 ~~~~~~L~~~l~~~~~~~~~~~~~i~~vGptGvGK--TTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~ 277 (424)
T PRK05703 200 RYLLELLANMIPVRVEDILKQGGVVALVGPTGVGK--TTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIM 277 (424)
T ss_pred HHHHHHHHHHhCccccccccCCcEEEEECCCCCCH--HHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHh
Confidence 345555555443 24566677 66665 4433 665553 2244336666677755433332 2 246
Q ss_pred CCceEEEEcCCCchhhcCCCCCccEEEEeCC
Q 027826 93 GFSPQVITGEADDEELMDGLVDIDFLVVDSR 123 (218)
Q Consensus 93 gl~i~~i~GdA~~~e~L~~l~~fDfVFIDa~ 123 (218)
|+.+.......++.+.|..+..+|+||||..
T Consensus 278 ~vp~~~~~~~~~l~~~l~~~~~~DlVlIDt~ 308 (424)
T PRK05703 278 GIPVEVVYDPKELAKALEQLRDCDVILIDTA 308 (424)
T ss_pred CCceEccCCHHhHHHHHHHhCCCCEEEEeCC
Confidence 6654433322233556666678999999965
No 236
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=86.48 E-value=2.4 Score=39.65 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=63.0
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc---eEEEEcCCCchhhcCCCC-Cc
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS---PQVITGEADDEELMDGLV-DI 115 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~---i~~i~GdA~~~e~L~~l~-~f 115 (218)
++-+|||.=+++|. =+|=+|.-+.. ..+ |+.=+.+++..+..+ +....|++ +++.+.|| ...|.... .|
T Consensus 49 ~~~~~lDalaasGv--R~iRy~~E~~~-~~~-v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DA--n~ll~~~~~~f 122 (377)
T PF02005_consen 49 GPIRVLDALAASGV--RGIRYAKELAG-VDK-VTANDISPEAVELIKRNLELNGLEDERIEVSNMDA--NVLLYSRQERF 122 (377)
T ss_dssp S-EEEEETT-TTSH--HHHHHHHH-SS-ECE-EEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-H--HHHHCHSTT-E
T ss_pred CCceEEeccccccH--HHHHHHHHcCC-CCE-EEEecCCHHHHHHHHHhHhhccccCceEEEehhhH--HHHhhhccccC
Confidence 34599998888888 67656665432 235 666677787666554 44556665 78999999 88886333 89
Q ss_pred cEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCC
Q 027826 116 DFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 116 DfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNv 148 (218)
|+|=||.- +.=.+|++.+ +-.+.||++-+--+
T Consensus 123 D~IDlDPf-GSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 123 DVIDLDPF-GSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp EEEEE--S-S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred CEEEeCCC-CCccHhHHHHHHHhhcCCEEEEecc
Confidence 99988886 5666899998 55555999876554
No 237
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=86.31 E-value=3.2 Score=36.89 Aligned_cols=80 Identities=21% Similarity=0.259 Sum_probs=41.6
Q ss_pred CCeEEEeC-cCcchHHHHHH--HHHhcCCC-CcEEEEEEcCCccHHHHHH---HHh-hCCCceEEEEcCCCchhhcCCCC
Q 027826 42 ARLIVETW-SHGGATATSVG--LAVASRHT-GGRHVCLVPDERSRSEYVH---ALG-EAGFSPQVITGEADDEELMDGLV 113 (218)
Q Consensus 42 ak~ILEiG-t~~GyiGsaig--lA~a~~~~-~G~vitt~e~~~~~~~~a~---~~~-~agl~i~~i~GdA~~~e~L~~l~ 113 (218)
++.|+=+| ||+|= |++. ||..+... +++-|..+..++.+..+.. .+. ..|+.+.+...+.++.+.|..+.
T Consensus 194 ~~vi~~vGptGvGK--TTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~ 271 (282)
T TIGR03499 194 GGVIALVGPTGVGK--TTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR 271 (282)
T ss_pred CeEEEEECCCCCCH--HHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc
Confidence 33555555 55565 4333 66655432 3233555566665433332 232 45555433322222355666677
Q ss_pred CccEEEEeCC
Q 027826 114 DIDFLVVDSR 123 (218)
Q Consensus 114 ~fDfVFIDa~ 123 (218)
.+|+||||..
T Consensus 272 ~~d~vliDt~ 281 (282)
T TIGR03499 272 DKDLILIDTA 281 (282)
T ss_pred CCCEEEEeCC
Confidence 8999999974
No 238
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=85.82 E-value=0.98 Score=43.82 Aligned_cols=96 Identities=11% Similarity=0.092 Sum_probs=50.0
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEcCCCchhhcCCCC-Cc
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGEADDEELMDGLV-DI 115 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~GdA~~~e~L~~l~-~f 115 (218)
.+.+.+|.||||+|- ++..+.+.+=..+++-.++. . +....| .+-|+. +-++ + ..-||--. .|
T Consensus 116 g~iR~~LDvGcG~aS------F~a~l~~r~V~t~s~a~~d~-~-~~qvqfaleRGvpa~~~~~---~--s~rLPfp~~~f 182 (506)
T PF03141_consen 116 GGIRTALDVGCGVAS------FGAYLLERNVTTMSFAPNDE-H-EAQVQFALERGVPAMIGVL---G--SQRLPFPSNAF 182 (506)
T ss_pred CceEEEEeccceeeh------hHHHHhhCCceEEEcccccC-C-chhhhhhhhcCcchhhhhh---c--cccccCCccch
Confidence 567899999998886 44444443323233333332 2 222233 356665 2111 2 33455443 89
Q ss_pred cEE-----EEeCCccCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 116 DFL-----VVDSRRKDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 116 DfV-----FIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
|+| .|+-...+ .-|+-.+ +++++||..|-..--
T Consensus 183 DmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 183 DMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred hhhhcccccccchhcc-cceeehhhhhhccCceEEecCCc
Confidence 998 33332222 1133333 777779998876653
No 239
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=85.76 E-value=5.1 Score=37.66 Aligned_cols=103 Identities=21% Similarity=0.225 Sum_probs=70.2
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhC--CCceEEEEcCCCchhhcCCCC-CccEE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEA--GFSPQVITGEADDEELMDGLV-DIDFL 118 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~a--gl~i~~i~GdA~~~e~L~~l~-~fDfV 118 (218)
+++|+|-=+++|. -+|=.|..... -+ ++.=+.+|+..+..+.+.+. +..+.++.+|| -..|.+.. .||+|
T Consensus 53 ~~~v~DalsatGi--RgIRya~E~~~--~~-v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DA--N~lm~~~~~~fd~I 125 (380)
T COG1867 53 PKRVLDALSATGI--RGIRYAVETGV--VK-VVLNDISPKAVELIKENVRLNSGEDAEVINKDA--NALLHELHRAFDVI 125 (380)
T ss_pred CeEEeecccccch--hHhhhhhhcCc--cE-EEEccCCHHHHHHHHHHHHhcCcccceeecchH--HHHHHhcCCCccEE
Confidence 9999998787787 66556654432 15 55557888877776655433 44488888999 99998876 78877
Q ss_pred EEeCCccCcHHHHHHh-cCCCCCeEEEE---eCCCCCC
Q 027826 119 VVDSRRKDFARVLRLA-NLSSRGAVLVC---KNAYSRN 152 (218)
Q Consensus 119 FIDa~K~~Y~~~~~~~-~L~~~GgvIV~---DNvl~~G 152 (218)
=||-- +.=.+|++.+ .-.+.||++-+ |-.-..|
T Consensus 126 DiDPF-GSPaPFlDaA~~s~~~~G~l~vTATD~a~L~G 162 (380)
T COG1867 126 DIDPF-GSPAPFLDAALRSVRRGGLLCVTATDTAPLCG 162 (380)
T ss_pred ecCCC-CCCchHHHHHHHHhhcCCEEEEEecccccccC
Confidence 66654 5666788887 44454888753 4444455
No 240
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=85.73 E-value=2.1 Score=31.99 Aligned_cols=66 Identities=26% Similarity=0.384 Sum_probs=44.6
Q ss_pred CcchHHHHHHHHHhcCCCCc-EEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCC--CccEEEEeCCcc
Q 027826 51 HGGATATSVGLAVASRHTGG-RHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLV--DIDFLVVDSRRK 125 (218)
Q Consensus 51 ~~GyiGsaiglA~a~~~~~G-~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~--~fDfVFIDa~K~ 125 (218)
|+|. .+..+++.+.+ ++ . ++.++.+++.. +.+.+.| ++++.||++..++|.++. ..|.+++..+..
T Consensus 5 G~g~--~~~~i~~~L~~-~~~~-vvvid~d~~~~---~~~~~~~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 5 GYGR--IGREIAEQLKE-GGID-VVVIDRDPERV---EELREEG--VEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp S-SH--HHHHHHHHHHH-TTSE-EEEEESSHHHH---HHHHHTT--SEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred cCCH--HHHHHHHHHHh-CCCE-EEEEECCcHHH---HHHHhcc--cccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 3455 34447777766 56 5 66778887553 3334555 679999997778898765 899999998744
No 241
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=85.60 E-value=2.6 Score=39.41 Aligned_cols=122 Identities=15% Similarity=0.131 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHH--HHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCceEEEE
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG--LAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQVIT 100 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaig--lA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~i~~i~ 100 (218)
.-.|.+..+=..|+.+.++..++=. ++|. +||. +...+ .+|.+++..-..-......-+ .+.+.|+++++..
T Consensus 52 ~gnPt~~~le~~la~Le~g~~a~~~--~SGm--aAi~~~l~~ll-~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d 126 (386)
T PF01053_consen 52 YGNPTVRALEQRLAALEGGEDALLF--SSGM--AAISAALLALL-KPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVD 126 (386)
T ss_dssp TC-HHHHHHHHHHHHHHT-SEEEEE--SSHH--HHHHHHHHHHS--TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEES
T ss_pred cccccHHHHHHHHHHhhcccceeec--cchH--HHHHHHHHhhc-ccCCceEecCCccCcchhhhhhhhcccCcEEEEeC
Confidence 5689999999999999999988884 5566 5552 33333 446786665333222222223 3446787766664
Q ss_pred cCCCchhhcCC-CC-CccEEEEeCCcc--CcHHHHHHh-cCC-CCC-eEEEEeCCCCCC
Q 027826 101 GEADDEELMDG-LV-DIDFLVVDSRRK--DFARVLRLA-NLS-SRG-AVLVCKNAYSRN 152 (218)
Q Consensus 101 GdA~~~e~L~~-l~-~fDfVFIDa~K~--~Y~~~~~~~-~L~-~~G-gvIV~DNvl~~G 152 (218)
..- .+.+.. ++ .-++||+..--. ....-++.+ ++. +.| .++|+||++-.+
T Consensus 127 ~~d--~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 127 PTD--LEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp TTS--HHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred chh--HHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 433 555543 44 899999997633 233333333 443 346 899999998544
No 242
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=85.47 E-value=8.2 Score=35.24 Aligned_cols=121 Identities=7% Similarity=0.072 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEcC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITGE 102 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~Gd 102 (218)
.-.|...+|=..|++..++...+ -+++|. .++.++.++..++.++++....-+.... ....+...|+.+..+.
T Consensus 49 ~~~pt~~~le~~la~l~g~~~~~--~~~sG~--~ai~~~~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd-- 122 (366)
T PRK08247 49 TGNPTRGVLEQAIADLEGGDQGF--ACSSGM--AAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVN-- 122 (366)
T ss_pred CCCchHHHHHHHHHHHhCCCcEE--EEcCHH--HHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEEC--
Confidence 45688899999999999988764 455666 4554344443446676654333222222 2233456776644432
Q ss_pred CCchhhcC-CCC-CccEEEEeCC--ccCcHHHHHHh-cCC-CCCeEEEEeCCCC
Q 027826 103 ADDEELMD-GLV-DIDFLVVDSR--RKDFARVLRLA-NLS-SRGAVLVCKNAYS 150 (218)
Q Consensus 103 A~~~e~L~-~l~-~fDfVFIDa~--K~~Y~~~~~~~-~L~-~~GgvIV~DNvl~ 150 (218)
.++.+.+. .+. ..++||+..- +-....-++.+ .+. +.|.++|+||+..
T Consensus 123 ~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~ 176 (366)
T PRK08247 123 TASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFY 176 (366)
T ss_pred CCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 22234343 343 6789998543 22222334444 333 4488999999974
No 243
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=85.45 E-value=5.8 Score=37.05 Aligned_cols=96 Identities=19% Similarity=0.161 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHh----------cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCC
Q 027826 24 SHESGVAELVSAMAAG----------WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAG 93 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~----------~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~ag 93 (218)
..++..-++...+-.. ..-+++|++|++.|= =|--|+ +.|++ |+.++..+ .+..+...+
T Consensus 184 apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGG--WT~~L~----~rG~~-V~AVD~g~----l~~~L~~~~ 252 (357)
T PRK11760 184 APSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGG--WTYQLV----RRGMF-VTAVDNGP----MAQSLMDTG 252 (357)
T ss_pred CCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcH--HHHHHH----HcCCE-EEEEechh----cCHhhhCCC
Confidence 4555555555554443 355699999999985 221133 23667 55555443 223332221
Q ss_pred CceEEEEcCCCchhhcCCCCCccEEEEeCCccCcHHHHHHh
Q 027826 94 FSPQVITGEADDEELMDGLVDIDFLVVDSRRKDFARVLRLA 134 (218)
Q Consensus 94 l~i~~i~GdA~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~ 134 (218)
.|+.+.+++ ....+.-.++|+++.|.. +.-.+..+++
T Consensus 253 -~V~h~~~d~--fr~~p~~~~vDwvVcDmv-e~P~rva~lm 289 (357)
T PRK11760 253 -QVEHLRADG--FKFRPPRKNVDWLVCDMV-EKPARVAELM 289 (357)
T ss_pred -CEEEEeccC--cccCCCCCCCCEEEEecc-cCHHHHHHHH
Confidence 289999999 888776458999999997 4444555655
No 244
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=85.25 E-value=1.6 Score=38.42 Aligned_cols=71 Identities=18% Similarity=0.323 Sum_probs=39.3
Q ss_pred CcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHH--HHHHhhC-CCc--eEEEEcCCCchhhcCCC------CCccEEE
Q 027826 51 HGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY--VHALGEA-GFS--PQVITGEADDEELMDGL------VDIDFLV 119 (218)
Q Consensus 51 ~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~--a~~~~~a-gl~--i~~i~GdA~~~e~L~~l------~~fDfVF 119 (218)
|+|=..+++.||.++...|++ |+.++-||.+.-. ++.-.+. .+. +++...+- ...|... ..|||||
T Consensus 12 GaGKTT~~~~LAs~la~~G~~-V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e--~~~l~~~~e~a~~~~~d~Vl 88 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARGAR-VALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADE--LTILEDAYEAAEASGFDFVL 88 (231)
T ss_pred CCcHHHHHHHHHHHHHHCCCe-EEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccc--hhhHHHHHHHHHhcCCCEEE
Confidence 456522344577777655666 7778888875332 2211122 233 55555444 3344332 2699999
Q ss_pred EeCCc
Q 027826 120 VDSRR 124 (218)
Q Consensus 120 IDa~K 124 (218)
||-.-
T Consensus 89 vDleG 93 (231)
T PF07015_consen 89 VDLEG 93 (231)
T ss_pred EeCCC
Confidence 99863
No 245
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=85.07 E-value=4.2 Score=37.64 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=46.3
Q ss_pred eEEEeCcC-----cchHHHHHHHHHhcCCCC--cEEEEEEcCCccHHHH---HHHHhhCCCceEEEEcCCCchhhcCCCC
Q 027826 44 LIVETWSH-----GGATATSVGLAVASRHTG--GRHVCLVPDERSRSEY---VHALGEAGFSPQVITGEADDEELMDGLV 113 (218)
Q Consensus 44 ~ILEiGt~-----~GyiGsaiglA~a~~~~~--G~vitt~e~~~~~~~~---a~~~~~agl~i~~i~GdA~~~e~L~~l~ 113 (218)
.||=.+-+ .|| ||++|+..++...+ =+ |...|..|...-. ++.+.+.|+.++++...+ .-.+=.-.
T Consensus 149 ~ILThc~sg~lat~~~-gTal~~i~~A~~~gk~~~-V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~Dsa--~~~~M~~~ 224 (344)
T PRK05720 149 GILTHCNAGWLATAGY-GTALAPIYAAKEKGIDIH-VYADETRPRLQGARLTAWELYQAGIDVTVITDNM--AAHLMQTG 224 (344)
T ss_pred EEEEecCCCcceecch-hHHHHHHHHHHHcCCceE-EEEcCCCChhhhHHHHHHHHHHCCCCEEEEcccH--HHHHhccc
Confidence 57765321 266 78888555443212 23 4455666654432 566779999999998777 55443323
Q ss_pred CccEEEEeCC
Q 027826 114 DIDFLVVDSR 123 (218)
Q Consensus 114 ~fDfVFIDa~ 123 (218)
..|+|++-|+
T Consensus 225 ~vd~VivGAd 234 (344)
T PRK05720 225 KIDAVIVGAD 234 (344)
T ss_pred CCCEEEEccc
Confidence 6888888766
No 246
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=84.59 E-value=12 Score=32.67 Aligned_cols=100 Identities=19% Similarity=0.129 Sum_probs=60.2
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh--hCCCceEEEEcCCCchhhcCCC-CCc
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG--EAGFSPQVITGEADDEELMDGL-VDI 115 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~--~agl~i~~i~GdA~~~e~L~~l-~~f 115 (218)
+..-.+||=+|.++|. |.-.++--+. .|+ |..+|..+.. .++.+. +.--.|--+.+||+--+.-..+ +..
T Consensus 74 i~~g~~VLYLGAasGT--TvSHVSDIv~--~G~-iYaVEfs~R~--~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~V 146 (231)
T COG1889 74 IKEGSKVLYLGAASGT--TVSHVSDIVG--EGR-IYAVEFSPRP--MRELLDVAEKRPNIIPILEDARKPEKYRHLVEKV 146 (231)
T ss_pred cCCCCEEEEeeccCCC--cHhHHHhccC--CCc-EEEEEecchh--HHHHHHHHHhCCCceeeecccCCcHHhhhhcccc
Confidence 3456799999999997 5555776654 578 7777887743 222221 1111155588999111111222 589
Q ss_pred cEEEEeCCccCcHHHHHH-h--cCCCCCeEEEE
Q 027826 116 DFLVVDSRRKDFARVLRL-A--NLSSRGAVLVC 145 (218)
Q Consensus 116 DfVFIDa~K~~Y~~~~~~-~--~L~~~GgvIV~ 145 (218)
|+||.|-...+-.+.+-. + -|.+.|+++++
T Consensus 147 Dviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 147 DVIYQDVAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cEEEEecCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 999999887666666655 3 45554444443
No 247
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=84.25 E-value=15 Score=37.00 Aligned_cols=95 Identities=7% Similarity=0.048 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHh-cCCCeEEEeCcCcchHHHHHHH-HHhcCC----------------------------------
Q 027826 24 SHESGVAELVSAMAAG-WDARLIVETWSHGGATATSVGL-AVASRH---------------------------------- 67 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~-~~ak~ILEiGt~~GyiGsaigl-A~a~~~---------------------------------- 67 (218)
++.+..+.-|-.++.- .+-..++.-.||+|.+..-.+| |...++
T Consensus 172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 4555666555556554 3457899999999973322222 221111
Q ss_pred ---CCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEcCCCchhhcCCC--CCccEEEEe
Q 027826 68 ---TGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGEADDEELMDGL--VDIDFLVVD 121 (218)
Q Consensus 68 ---~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~GdA~~~e~L~~l--~~fDfVFID 121 (218)
...+ ++-.|.++++...++.+ ..+|+. |+++.+|+ .+.-... ++||+|..+
T Consensus 252 ~~~~~~~-i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~--~~~~~~~~~~~~d~IvtN 310 (702)
T PRK11783 252 LAELPSK-FYGSDIDPRVIQAARKNARRAGVAELITFEVKDV--ADLKNPLPKGPTGLVISN 310 (702)
T ss_pred ccccCce-EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCCh--hhcccccccCCCCEEEEC
Confidence 1124 66678888888877655 689997 99999999 7754333 269999988
No 248
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=83.89 E-value=5 Score=34.37 Aligned_cols=107 Identities=12% Similarity=0.070 Sum_probs=51.1
Q ss_pred HHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH----Hh----hCCCc---eEEEEcCCCc
Q 027826 37 AAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA----LG----EAGFS---PQVITGEADD 105 (218)
Q Consensus 37 ~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~----~~----~agl~---i~~i~GdA~~ 105 (218)
+.+..-...++||||.|= ..+ +.|+...-.+ ..-+|..+.....++. +. ..|.. ++++.||.
T Consensus 38 ~~l~~~dvF~DlGSG~G~--~v~--~aal~~~~~~-~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf-- 110 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGN--VVF--QAALQTGCKK-SVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF-- 110 (205)
T ss_dssp TT--TT-EEEEES-TTSH--HHH--HHHHHH--SE-EEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T--
T ss_pred hCCCCCCEEEECCCCCCH--HHH--HHHHHcCCcE-EEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc--
Confidence 344445589999999886 332 2222221234 4556888887665542 21 34554 88899998
Q ss_pred hh--hcCC-CCCccEEEEeCCc---cCcHHHHHHhcCCCCCeEEEEeCCCC
Q 027826 106 EE--LMDG-LVDIDFLVVDSRR---KDFARVLRLANLSSRGAVLVCKNAYS 150 (218)
Q Consensus 106 ~e--~L~~-l~~fDfVFIDa~K---~~Y~~~~~~~~L~~~GgvIV~DNvl~ 150 (218)
++ ..+. +..-|+||+...- +.-....+.+.-+|+|..||+=--+.
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~~ 161 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPFC 161 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-SS
T ss_pred cccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCcC
Confidence 43 2332 2478999998752 11111222223346699998744343
No 249
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=83.86 E-value=6.9 Score=36.16 Aligned_cols=123 Identities=11% Similarity=0.027 Sum_probs=69.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHH-HHHHhhCCCceEEEEcC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY-VHALGEAGFSPQVITGE 102 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~-a~~~~~agl~i~~i~Gd 102 (218)
.-.|.+.+|=..+++..+++..+=+ ++|. +++-++.++..+|.++++....-...... .......|+++.++..+
T Consensus 47 ~~~p~~~~Le~~la~l~g~~~al~~--~SG~--~Al~~~l~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~ 122 (380)
T PRK06176 47 SGNPTRFALEELIADLEGGVKGFAF--ASGL--AGIHAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTS 122 (380)
T ss_pred CCChhHHHHHHHHHHHhCCCCEEEE--CCHH--HHHHHHHHHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCC
Confidence 5678899999999999988887654 4454 34433333334577866653322212222 22334677665554333
Q ss_pred CCchhhcCC-CC-CccEEEEeCC--ccCcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 103 ADDEELMDG-LV-DIDFLVVDSR--RKDFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 103 A~~~e~L~~-l~-~fDfVFIDa~--K~~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
- .+.+.+ ++ ...+||+-.- .-....-++.+ .+. +.|.++|+||+...+
T Consensus 123 d--~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~ 176 (380)
T PRK06176 123 D--LSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATP 176 (380)
T ss_pred C--HHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcccc
Confidence 2 444443 44 6789998433 21122223333 333 448999999997543
No 250
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=82.81 E-value=7.9 Score=37.29 Aligned_cols=91 Identities=13% Similarity=0.149 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHhc-------CCCeEEEeCcCcchHHHHHHHHHhcCCCC---c--EEEEEEcCCccHHHHHH-HHhhC
Q 027826 26 ESGVAELVSAMAAGW-------DARLIVETWSHGGATATSVGLAVASRHTG---G--RHVCLVPDERSRSEYVH-ALGEA 92 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~-------~ak~ILEiGt~~GyiGsaiglA~a~~~~~---G--~vitt~e~~~~~~~~a~-~~~~a 92 (218)
++..+++|..++... ...+|||.+||+|- -.++++..+...+ + .-++..|.++.....++ .+...
T Consensus 9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~--fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~ 86 (524)
T TIGR02987 9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGR--LIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF 86 (524)
T ss_pred cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccH--HHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc
Confidence 345555555544221 45699999999998 4444444442111 1 23667788887766555 44444
Q ss_pred C-CceEEEEcCCCchhhc----CC-CCCccEEEE
Q 027826 93 G-FSPQVITGEADDEELM----DG-LVDIDFLVV 120 (218)
Q Consensus 93 g-l~i~~i~GdA~~~e~L----~~-l~~fDfVFI 120 (218)
+ +.++++.+|. +... +. .+.||+|.-
T Consensus 87 ~~~~~~i~~~d~--l~~~~~~~~~~~~~fD~IIg 118 (524)
T TIGR02987 87 ALLEINVINFNS--LSYVLLNIESYLDLFDIVIT 118 (524)
T ss_pred CCCCceeeeccc--ccccccccccccCcccEEEe
Confidence 4 3367777776 4311 11 247999874
No 251
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=82.78 E-value=16 Score=31.98 Aligned_cols=71 Identities=13% Similarity=-0.003 Sum_probs=46.2
Q ss_pred hhhHHHHHHhhhccCC-CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHH
Q 027826 8 ETASKAYIDTVKSCEL-SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY 85 (218)
Q Consensus 8 ~~a~~ayl~~l~~~~~-~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~ 85 (218)
.+.++|-++---.... +++......+...++-..|=+.|=+|-+-.+ . |..++.. +|+ +..+|.++.....
T Consensus 5 ~~~a~AlvhYatsn~t~q~s~~Ei~~~~~VL~~raPCN~LVFGLghds---l--lW~aLN~-gGr-TvFLEEd~~~i~~ 76 (225)
T TIGR01627 5 LSPADALQHYRASNGPTALMEKELKLLSDVLTRRSPCNILVFGLAHQY---L--MWSSLNH-RGR-TVFIEEEKIMIAK 76 (225)
T ss_pred hhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHhcCCceEEEeccCcch---H--HHHHhcC-CCe-eEEecCCHHHHHH
Confidence 3344555544433222 6778888889999999999999999887664 3 4444554 788 4556666655433
No 252
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=82.67 E-value=4.3 Score=35.97 Aligned_cols=92 Identities=10% Similarity=0.054 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcC-----CCCcEEEEEEcCCccHHHHHHH-HhhCCCc---
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASR-----HTGGRHVCLVPDERSRSEYVHA-LGEAGFS--- 95 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~-----~~~G~vitt~e~~~~~~~~a~~-~~~agl~--- 95 (218)
-++..++|+..++......+|++-.||+|- -.+....-+. ...-. ++-.|.++.....++. +.-.|..
T Consensus 30 TP~~i~~l~~~~~~~~~~~~VlDPacGsG~--fL~~~~~~i~~~~~~~~~~~-i~G~ei~~~~~~la~~nl~l~~~~~~~ 106 (311)
T PF02384_consen 30 TPREIVDLMVKLLNPKKGDSVLDPACGSGG--FLVAAMEYIKEKRNKIKEIN-IYGIEIDPEAVALAKLNLLLHGIDNSN 106 (311)
T ss_dssp --HHHHHHHHHHHTT-TTEEEEETT-TTSH--HHHHHHHHHHTCHHHHCCEE-EEEEES-HHHHHHHHHHHHHTTHHCBG
T ss_pred hHHHHHHHHHhhhhccccceeechhhhHHH--HHHHHHHhhcccccccccce-eEeecCcHHHHHHHHhhhhhhcccccc
Confidence 467788999999977777899999999997 3333333210 11334 6677888887766653 3334444
Q ss_pred eEEEEcCCCchhhcCC--CCCccEEEEe
Q 027826 96 PQVITGEADDEELMDG--LVDIDFLVVD 121 (218)
Q Consensus 96 i~~i~GdA~~~e~L~~--l~~fDfVFID 121 (218)
..+..+|. +..-.. ...||+|+..
T Consensus 107 ~~i~~~d~--l~~~~~~~~~~~D~ii~N 132 (311)
T PF02384_consen 107 INIIQGDS--LENDKFIKNQKFDVIIGN 132 (311)
T ss_dssp CEEEES-T--TTSHSCTST--EEEEEEE
T ss_pred cccccccc--ccccccccccccccccCC
Confidence 56999999 654443 3489999875
No 253
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=82.13 E-value=7.8 Score=35.35 Aligned_cols=80 Identities=15% Similarity=0.139 Sum_probs=54.1
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCceEEEEcCCCchhh---cCCC--CC
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQVITGEADDEEL---MDGL--VD 114 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~i~~i~GdA~~~e~---L~~l--~~ 114 (218)
....+|....|.|- =|..|+.+++ +|+ ++.++.+++....++. +...+=.+++++++- .+. |+.+ ++
T Consensus 20 ~ggiyVD~TlG~GG--HS~~iL~~l~--~g~-vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF--~~l~~~l~~~~~~~ 92 (305)
T TIGR00006 20 PDGIYIDCTLGFGG--HSKAILEQLG--TGR-LIGIDRDPQAIAFAKERLSDFEGRVVLIHDNF--ANFFEHLDELLVTK 92 (305)
T ss_pred CCCEEEEeCCCChH--HHHHHHHhCC--CCE-EEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCH--HHHHHHHHhcCCCc
Confidence 33579995555554 8888888775 389 5567888887666654 444332389999998 654 4443 37
Q ss_pred ccEEEEeCCccCc
Q 027826 115 IDFLVVDSRRKDF 127 (218)
Q Consensus 115 fDfVFIDa~K~~Y 127 (218)
+|.|+.|---+.+
T Consensus 93 vDgIl~DLGvSS~ 105 (305)
T TIGR00006 93 IDGILVDLGVSSP 105 (305)
T ss_pred ccEEEEeccCCHh
Confidence 9999999765444
No 254
>PRK08064 cystathionine beta-lyase; Provisional
Probab=81.37 E-value=8.9 Score=35.50 Aligned_cols=122 Identities=11% Similarity=0.094 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEcC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITGE 102 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~Gd 102 (218)
.-.|...+|-+.|++..+++..+= +++|. ++|.++..+..+|.+++++...-..... ..+.....|.++.++.-+
T Consensus 51 ~~~p~~~~le~~lA~l~g~~~~v~--~~sG~--~ai~~~l~~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 126 (390)
T PRK08064 51 SGNPTREALEDIIAELEGGTKGFA--FASGM--AAISTAFLLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMT 126 (390)
T ss_pred CCChhHHHHHHHHHHHhCCCCeEE--ECCHH--HHHHHHHHHhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCC
Confidence 457889999999999998887554 45555 4544333222335675655332221222 223345678775554322
Q ss_pred CCchhhc-CCCC-CccEEEEeCCcc---CcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 103 ADDEELM-DGLV-DIDFLVVDSRRK---DFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 103 A~~~e~L-~~l~-~fDfVFIDa~K~---~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
- .+.+ ..+. .-++||+..--. ...+ ++.+ .+. +.|.++|+||+...+
T Consensus 127 d--~~~l~~~l~~~tklV~l~~p~NptG~~~d-l~~I~~la~~~g~~vvvD~a~~~~ 180 (390)
T PRK08064 127 N--LEEVAQNIKPNTKLFYVETPSNPLLKVTD-IRGVVKLAKAIGCLTFVDNTFLTP 180 (390)
T ss_pred C--HHHHHHhcCCCceEEEEECCCCCCcEecc-HHHHHHHHHHcCCEEEEECCCCcc
Confidence 2 3333 3454 678999875432 2222 2222 332 448899999996443
No 255
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=81.22 E-value=12 Score=34.92 Aligned_cols=123 Identities=16% Similarity=0.098 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcC-CccHHHHHHHHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPD-ERSRSEYVHALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~-~~~~~~~a~~~~~agl~i~~i~G 101 (218)
.-.|...+|-..|++..+++.++=++ +|. +++-.+ .++..+|.++++.... .+......+.....|..+.++..
T Consensus 67 ~~~p~~~~le~~lA~l~g~~~al~~~--sG~--~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~ 142 (403)
T PRK07810 67 YGNPTVSMFEERLRLIEGAEACFATA--SGM--SAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDG 142 (403)
T ss_pred CCCchHHHHHHHHHHHhCCCcEEEEC--ChH--HHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECC
Confidence 46788999999999999999888754 454 444311 1223346675554312 12222333444577877665543
Q ss_pred CCCchhhcC-CCC-CccEEEEeCCccCcH--HHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMD-GLV-DIDFLVVDSRRKDFA--RVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~-~l~-~fDfVFIDa~K~~Y~--~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+- .+.+. .+. .-++||+..--.-.. .-++.+ .+. +.|.++|+||+...+
T Consensus 143 ~d--~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~ 197 (403)
T PRK07810 143 ED--LSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATP 197 (403)
T ss_pred CC--HHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 32 44343 343 678999865432222 223333 333 448899999997655
No 256
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=81.18 E-value=21 Score=32.98 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHH-HHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGL-AVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaigl-A~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~i~~i~G 101 (218)
.-.|....|=..|++..++..++= +.+|+ .++.+ ..++..+|.+++++...-........ .....|+.++++.-
T Consensus 47 ~gnPt~~~lE~~lA~l~g~~~~~~--~~sG~--~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~ 122 (377)
T TIGR01324 47 RGTLTHFALQDAMCELEGGAGCYL--YPSGL--AAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDP 122 (377)
T ss_pred CCCccHHHHHHHHHHHhCCCcEEE--ECcHH--HHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECC
Confidence 456888888888888889988886 55566 45442 22333446676655322221122222 23456766554422
Q ss_pred CCCchhhcCC-CC-CccEEEEeCC--ccCcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMDG-LV-DIDFLVVDSR--RKDFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~~-l~-~fDfVFIDa~--K~~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+- .+.+.+ +. ...+|++..- ......-++.+ .+. +.|..+|+||+...|
T Consensus 123 ~~--~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g 177 (377)
T TIGR01324 123 LI--GEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAG 177 (377)
T ss_pred CC--HHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccc
Confidence 11 233443 33 6789998754 33334444444 443 448999999998666
No 257
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=80.87 E-value=6.8 Score=34.76 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHH---HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEc
Q 027826 25 HESGVAELVSAMA---AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITG 101 (218)
Q Consensus 25 i~p~~g~fL~~L~---~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~G 101 (218)
+++..-.+...|= -..+=+.+|.||++||= +...+.+.|++.|+.++--.. +..-.+ +.+..|.++++
T Consensus 60 VSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGG------FTd~lLq~gAk~VyavDVG~~--Ql~~kL-R~d~rV~~~E~ 130 (245)
T COG1189 60 VSRGGLKLEKALEEFELDVKGKVVLDIGSSTGG------FTDVLLQRGAKHVYAVDVGYG--QLHWKL-RNDPRVIVLER 130 (245)
T ss_pred cccHHHHHHHHHHhcCcCCCCCEEEEecCCCcc------HHHHHHHcCCcEEEEEEccCC--ccCHhH-hcCCcEEEEec
Confidence 4444434444333 34577899999999985 233333445666766655432 222111 34444555554
Q ss_pred CCCchhhcC--CCC-CccEEEEeCCccCcHHHHHHh-cCCCCCeEEEE
Q 027826 102 EADDEELMD--GLV-DIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 102 dA~~~e~L~--~l~-~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
.= ...|. .+. ..||+++|..--.-...+..+ .++.+++.+++
T Consensus 131 tN--~r~l~~~~~~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 131 TN--VRYLTPEDFTEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred CC--hhhCCHHHcccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence 33 33232 232 799999998866666666666 55544665553
No 258
>PRK08114 cystathionine beta-lyase; Provisional
Probab=80.31 E-value=38 Score=31.81 Aligned_cols=125 Identities=12% Similarity=0.026 Sum_probs=73.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHH-HHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCceEEE
Q 027826 22 ELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGL-AVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFSPQVI 99 (218)
Q Consensus 22 ~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaigl-A~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~i~~i 99 (218)
.+.-.|....|=..|+.+-++...+=+.+ |. ++|.+ ..++-.+|.++|++...-....... +.+.+.|+++.++
T Consensus 57 sR~~nPt~~~le~~la~LEg~~~a~~~~S--Gm--aAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~v 132 (395)
T PRK08114 57 GRRGTLTHFSLQEAMCELEGGAGCALYPC--GA--AAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWF 132 (395)
T ss_pred cCCCChhHHHHHHHHHHHhCCCeEEEEhH--HH--HHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEE
Confidence 34678999999999999999998888655 55 44442 2233344678666522221222222 3345788876665
Q ss_pred EcCCCchhhcC-CCC-CccEEEEeCCccCcHH--HHHHh-cCC-C--CCeEEEEeCCCCCC
Q 027826 100 TGEADDEELMD-GLV-DIDFLVVDSRRKDFAR--VLRLA-NLS-S--RGAVLVCKNAYSRN 152 (218)
Q Consensus 100 ~GdA~~~e~L~-~l~-~fDfVFIDa~K~~Y~~--~~~~~-~L~-~--~GgvIV~DNvl~~G 152 (218)
...- .+.+. .++ .-.+||++.--.--.. -++.+ .+. + +|.++++||++.-|
T Consensus 133 d~~d--~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p 191 (395)
T PRK08114 133 DPLI--GADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAG 191 (395)
T ss_pred CCCC--HHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 4322 33343 344 5689999976433322 22222 332 2 26899999998655
No 259
>PRK05939 hypothetical protein; Provisional
Probab=80.00 E-value=19 Score=33.52 Aligned_cols=123 Identities=12% Similarity=0.066 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGE 102 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~Gd 102 (218)
.-.|.+.+|=..|+++.+++..+-+. +|. ++|-.+ .++..+|.+++++...-+........+.+.|.++.++.-+
T Consensus 44 ~g~p~~~~lE~~la~leg~~~~v~~s--sG~--~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~ 119 (397)
T PRK05939 44 QGTPTTAALEAKITKMEGGVGTVCFA--TGM--AAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT 119 (397)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEeC--CHH--HHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEEECCC
Confidence 46798999999999999999887754 455 454322 2333446676554322222222223345678775555322
Q ss_pred CCchhhcCC-CC-CccEEEEeCCc--cCcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 103 ADDEELMDG-LV-DIDFLVVDSRR--KDFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 103 A~~~e~L~~-l~-~fDfVFIDa~K--~~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
- .+.|.. +. .-.+|++..-- -....-++.+ .+. +.|.++|+||+...+
T Consensus 120 d--~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~ 173 (397)
T PRK05939 120 D--VQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSP 173 (397)
T ss_pred C--HHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccc
Confidence 2 344443 44 67899997532 1223333433 433 458999999997544
No 260
>PRK07671 cystathionine beta-lyase; Provisional
Probab=79.69 E-value=14 Score=34.15 Aligned_cols=124 Identities=10% Similarity=0.111 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEcC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITGE 102 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~Gd 102 (218)
.-.|...+|-..|++..+....+=+|+ |. +++-++.++-.+|.++++....-..... .++.+...|+++.++..+
T Consensus 47 ~~~p~~~~Le~~lA~l~g~~~~~~~~s--G~--aai~~~~~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 122 (377)
T PRK07671 47 TGNPTRAALEELIAVLEGGHAGFAFGS--GM--AAITAVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTS 122 (377)
T ss_pred CCChHHHHHHHHHHHHhCCCceEEeCC--HH--HHHHHHHHHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCC
Confidence 567889999999999998887655555 44 3443333333346676654332221222 233345678775555332
Q ss_pred CCchhhcCCCC-CccEEEEeCCccCc--HHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 103 ADDEELMDGLV-DIDFLVVDSRRKDF--ARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 103 A~~~e~L~~l~-~fDfVFIDa~K~~Y--~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
- +.++...++ .-.+||+..--.-+ ..-++.+ .+. +.|..+|+||+...+
T Consensus 123 d-~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~ 176 (377)
T PRK07671 123 N-LEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTP 176 (377)
T ss_pred C-HHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 2 133333454 67899986432211 1222223 332 448999999997543
No 261
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=79.62 E-value=8.2 Score=36.55 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=52.2
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEE-EEcCCccH-----------HHHHHHHhhCCCceEEEEcCCCchh
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVC-LVPDERSR-----------SEYVHALGEAGFSPQVITGEADDEE 107 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vit-t~e~~~~~-----------~~~a~~~~~agl~i~~i~GdA~~~e 107 (218)
.++|++|=+|.++|+ |.+.++|.++ ..|..++. +.+.++.. ...++...+.|..+..+.+|+...+
T Consensus 39 ~ggK~aLVTGaSsGI-GlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E 116 (398)
T PRK13656 39 NGPKKVLVIGASSGY-GLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDE 116 (398)
T ss_pred CCCCEEEEECCCchH-hHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 677899999999995 7776678888 55776443 32222211 1122233456766667889984434
Q ss_pred hcCC--------CCCccEEEEeCCcc
Q 027826 108 LMDG--------LVDIDFLVVDSRRK 125 (218)
Q Consensus 108 ~L~~--------l~~fDfVFIDa~K~ 125 (218)
.+.+ +..+|+++--+...
T Consensus 117 ~v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 117 IKQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCccC
Confidence 4332 34789988877654
No 262
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=79.27 E-value=9.8 Score=34.31 Aligned_cols=119 Identities=11% Similarity=0.025 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHh-cCCCeEEEeCcCcchHHHHHHH--HHhcCCC--CcEEEEEEcCCccHHHHHHH------------
Q 027826 26 ESGVAELVSAMAAG-WDARLIVETWSHGGATATSVGL--AVASRHT--GGRHVCLVPDERSRSEYVHA------------ 88 (218)
Q Consensus 26 ~p~~g~fL~~L~~~-~~ak~ILEiGt~~GyiGsaigl--A~a~~~~--~G~vitt~e~~~~~~~~a~~------------ 88 (218)
+|++=++|...++. .++=+|.-.||++|==..+|+| .++.+.. +-+++.| +.++...+.|+.
T Consensus 99 d~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~at-DIs~~aL~~Ar~G~Y~~~~~r~~p 177 (287)
T PRK10611 99 EAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFAS-DIDTEVLEKARSGIYRQEELKTLS 177 (287)
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEE-ECCHHHHHHHHhCCCCHHHHhcCC
Confidence 35555555544432 2345999999999943345553 3332221 2344444 566655444431
Q ss_pred -------Hhh-----CC-------Cc--eEEEEcCCCchhh-cCCCCCccEEEEeC-----CccCcHHHHHHh-cCCCCC
Q 027826 89 -------LGE-----AG-------FS--PQVITGEADDEEL-MDGLVDIDFLVVDS-----RRKDFARVLRLA-NLSSRG 140 (218)
Q Consensus 89 -------~~~-----ag-------l~--i~~i~GdA~~~e~-L~~l~~fDfVFIDa-----~K~~Y~~~~~~~-~L~~~G 140 (218)
|.+ .| +. |+|...|. .+- .+...+||+||.=. +++.-.+.++.+ ..++||
T Consensus 178 ~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL--~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg 255 (287)
T PRK10611 178 PQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNL--LAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD 255 (287)
T ss_pred HHHHHHHcccccCCCCceEEEChHHHccCEEEcccC--CCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence 101 11 11 67777777 552 22235899998721 223445566666 445559
Q ss_pred eEEEEeC
Q 027826 141 AVLVCKN 147 (218)
Q Consensus 141 gvIV~DN 147 (218)
|+++.-.
T Consensus 256 G~L~lG~ 262 (287)
T PRK10611 256 GLLFAGH 262 (287)
T ss_pred cEEEEeC
Confidence 9986644
No 263
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=78.92 E-value=16 Score=30.18 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=24.3
Q ss_pred hcCCCeEEEeCcCcchHHHHH--HHHHhcCCCCcEEEEEEcCCccH
Q 027826 39 GWDARLIVETWSHGGATATSV--GLAVASRHTGGRHVCLVPDERSR 82 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsai--glA~a~~~~~G~vitt~e~~~~~ 82 (218)
..++|.|.=.++-.|.--|++ .||.++...|-+ |..++.|+..
T Consensus 14 ~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~r-VllID~D~~~ 58 (204)
T TIGR01007 14 GAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYK-TLLIDGDMRN 58 (204)
T ss_pred cCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCe-EEEEeCCCCC
Confidence 445666666655555311443 478777664556 5556666543
No 264
>PRK06194 hypothetical protein; Provisional
Probab=78.71 E-value=8.3 Score=33.10 Aligned_cols=80 Identities=14% Similarity=0.132 Sum_probs=46.5
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcCCC-------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMDGL------- 112 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~~l------- 112 (218)
+-++||=.|.+.| ||+.+. +.+...|.+++.+ ..+++. ....+.+...+..+.++.+|.++.+.+..+
T Consensus 5 ~~k~vlVtGasgg-IG~~la--~~l~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 5 AGKVAVITGAASG-FGLAFA--RIGAALGMKLVLA-DVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CCCEEEEeCCccH-HHHHHH--HHHHHCCCEEEEE-eCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3478887777766 688855 3333335574444 444433 223334444455578888998444444332
Q ss_pred -CCccEEEEeCCc
Q 027826 113 -VDIDFLVVDSRR 124 (218)
Q Consensus 113 -~~fDfVFIDa~K 124 (218)
.++|.||.=|.-
T Consensus 81 ~g~id~vi~~Ag~ 93 (287)
T PRK06194 81 FGAVHLLFNNAGV 93 (287)
T ss_pred cCCCCEEEECCCC
Confidence 368998876653
No 265
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=78.28 E-value=3.7 Score=35.46 Aligned_cols=97 Identities=19% Similarity=0.248 Sum_probs=58.5
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCC----C--
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGL----V-- 113 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l----~-- 113 (218)
.+..+|+++|+.-|- +.=+|......+++ |+.++..|-.. -.| |.++.||.+.-+++.++ .
T Consensus 44 ~~~~~ViDLGAAPGg---WsQva~~~~~~~~~-ivavDi~p~~~-------~~~--V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 44 KPGMVVVDLGAAPGG---WSQVAAKKLGAGGK-IVAVDILPMKP-------IPG--VIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred cCCCEEEEcCCCCCc---HHHHHHHHhCCCCc-EEEEECccccc-------CCC--ceEEeeeccCccHHHHHHHHcCCC
Confidence 356899999998774 32233333334567 55556665111 112 78888888544455443 3
Q ss_pred CccEEEEeCCc--------cCcHHHHHHh--------cCCCCCeEEEEeCCCC
Q 027826 114 DIDFLVVDSRR--------KDFARVLRLA--------NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 114 ~fDfVFIDa~K--------~~Y~~~~~~~--------~L~~~GgvIV~DNvl~ 150 (218)
++|+|.-|..+ ++| ....++ ..+++||..++--.-.
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~-r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHA-RSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CcceEEecCCCCcCCCccccHH-HHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 68999999987 333 233332 4556799988865433
No 266
>PRK05967 cystathionine beta-lyase; Provisional
Probab=78.25 E-value=27 Score=32.83 Aligned_cols=123 Identities=11% Similarity=0.083 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSEYV-HALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~i~~i~G 101 (218)
.-.|....|=..++.+.+....+=+.+ |. .++.++ .++..+|.++|++...-....... +...+.|++++++..
T Consensus 61 ~gnPt~~~Le~~la~le~~~~~v~~sS--G~--aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~ 136 (395)
T PRK05967 61 RGTPTTDALCKAIDALEGSAGTILVPS--GL--AAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDP 136 (395)
T ss_pred CCChHHHHHHHHHHHHhCCCCEEEECc--HH--HHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCC
Confidence 567777777777777776665554433 54 444322 233445778666533322222222 233578887776643
Q ss_pred CCCchhhcCC-CC-CccEEEEeCC--ccCcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMDG-LV-DIDFLVVDSR--RKDFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~~-l~-~fDfVFIDa~--K~~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+. .+.+.+ +. .-.+|++..- .-....-++.+ .+. ..|.++|+||++..+
T Consensus 137 ~~--~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p 191 (395)
T PRK05967 137 EI--GAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATP 191 (395)
T ss_pred CC--HHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCc
Confidence 32 444544 33 6789999953 33344445454 443 458999999997543
No 267
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=78.19 E-value=12 Score=34.45 Aligned_cols=123 Identities=13% Similarity=0.097 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCceEEEEcC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQVITGE 102 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~i~~i~Gd 102 (218)
.-.|...+|-..|++..++..++=+++ |. +++-++..+..++.+++++...-.......+. ....|+.+.++.-+
T Consensus 44 ~~~p~~~~le~~la~l~g~~~~l~~~s--G~--~al~~~l~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~ 119 (378)
T TIGR01329 44 SGNPTRTALESLLAKLDKADRAFAFSS--GM--AALDVITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT 119 (378)
T ss_pred CCChHHHHHHHHHHHHhCCCcEEEECC--HH--HHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCC
Confidence 456888899999999999988776444 54 44443222334466756542221111111222 24678764444322
Q ss_pred CCchhhcC-CCC-CccEEEEeCCcc--CcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 103 ADDEELMD-GLV-DIDFLVVDSRRK--DFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 103 A~~~e~L~-~l~-~fDfVFIDa~K~--~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+.+.+. .++ .-.+|++..--. ....-++.+ .+. +.|.++|+||+...+
T Consensus 120 --d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~ 173 (378)
T TIGR01329 120 --DLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSP 173 (378)
T ss_pred --CHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccc
Confidence 133333 344 678999886422 122223333 332 448999999996444
No 268
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=78.15 E-value=19 Score=33.09 Aligned_cols=123 Identities=16% Similarity=0.247 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEA 103 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA 103 (218)
.-.|.+.+|-..|++..+++.++= +.+|. .+|.++..+-.+|.++|+....-.............+ .+++....-
T Consensus 51 ~~~p~~~~le~~lA~leg~~~~v~--~~sG~--aAi~~~l~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~-~~~~~~~~d 125 (364)
T PRK07269 51 TKNPTRAKLEETLAAIESADYALA--TSSGM--SAIVLAFSVFPVGSKVVAVRDLYGGSFRWFNQQEKEG-RFHFTYANT 125 (364)
T ss_pred CCCccHHHHHHHHHHHhCCCeEEE--eCCHH--HHHHHHHHHhCCCCEEEEecCCcCchHHHHHHHHhcC-cEEEEecCC
Confidence 567889999999999999999987 55555 5554333333446776655322111111111111221 233322222
Q ss_pred CchhhcCCCC-CccEEEEeCCccCcHH--HHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 104 DDEELMDGLV-DIDFLVVDSRRKDFAR--VLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 104 ~~~e~L~~l~-~fDfVFIDa~K~~Y~~--~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+.++...+. .-++||+..--.-+.. -++.+ .+. +.|.++|+||++..+
T Consensus 126 -~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~ 178 (364)
T PRK07269 126 -EEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSP 178 (364)
T ss_pred -HHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccc
Confidence 133333343 5689997765332222 22333 333 448899999996543
No 269
>PRK09291 short chain dehydrogenase; Provisional
Probab=77.33 E-value=7.5 Score=32.57 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=44.2
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCC-CC-CccEEEE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDG-LV-DIDFLVV 120 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~-l~-~fDfVFI 120 (218)
++||=.|.+.| +|..+. ..+...|.+++.+....+.....+......+..++++.+|.++.+.+.. +. .+|.||.
T Consensus 3 ~~vlVtGasg~-iG~~ia--~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGAGSG-FGREVA--LRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCCCCH-HHHHHH--HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 46787777666 688854 3333335675554433222222222333455557788888844444433 33 7999999
Q ss_pred eCC
Q 027826 121 DSR 123 (218)
Q Consensus 121 Da~ 123 (218)
.|.
T Consensus 80 ~ag 82 (257)
T PRK09291 80 NAG 82 (257)
T ss_pred CCC
Confidence 765
No 270
>PRK07050 cystathionine beta-lyase; Provisional
Probab=77.13 E-value=36 Score=31.55 Aligned_cols=124 Identities=11% Similarity=0.070 Sum_probs=70.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCceEEEE
Q 027826 23 LSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQVIT 100 (218)
Q Consensus 23 ~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~i~~i~ 100 (218)
+.-.|.+.+|-+.+++..+++.++=. .+|. .++-++ .++-.+|.++++....-......... ....|+++.++.
T Consensus 61 r~~~pt~~~Le~~lA~l~g~~~~l~~--~sgt--~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd 136 (394)
T PRK07050 61 LHATPTSLALAQRLAEIEGGRHALLQ--PSGL--AAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYD 136 (394)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEe--ccHH--HHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEEC
Confidence 35678899999999999999988763 3333 333222 22234466766654333322222222 346787755553
Q ss_pred cCCCchhhcCC-CC-CccEEEEeCC--ccCcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 101 GEADDEELMDG-LV-DIDFLVVDSR--RKDFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 101 GdA~~~e~L~~-l~-~fDfVFIDa~--K~~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
.+- .+.+.. +. .-.+|++..- .-.....++.+ .+. ..|.++++||+...|
T Consensus 137 ~~~--~~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~ 192 (394)
T PRK07050 137 PLI--GAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAG 192 (394)
T ss_pred CCC--HHHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccc
Confidence 221 232332 33 5688988643 33345555555 443 348899999997555
No 271
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=76.66 E-value=16 Score=34.53 Aligned_cols=124 Identities=15% Similarity=0.181 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHH-HHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGL-AVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaigl-A~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~i~~i~G 101 (218)
.-.|..-.|=..++.+-++...+= +.+|. +||-. ..++.++|-+++.+.+.--...... +.+.+.|+++.+.-
T Consensus 60 ~~nPT~~~lE~~~a~LEg~~~~~a--fsSGm--aAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d- 134 (396)
T COG0626 60 TGNPTRDALEEALAELEGGEDAFA--FSSGM--AAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVD- 134 (396)
T ss_pred CCCccHHHHHHHHHHhhCCCcEEE--ecCcH--HHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEEC-
Confidence 447888888888999999999887 56666 55542 3333444677665543222222232 34457776655433
Q ss_pred CCCchhhcCCCC--CccEEEEeCCccCcHHHHHHh---cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMDGLV--DIDFLVVDSRRKDFARVLRLA---NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~~l~--~fDfVFIDa~K~~Y~~~~~~~---~L~-~~GgvIV~DNvl~~G 152 (218)
+.++.+....+. ..++||+..--.-..+..+.- ++. ..|.++|+||++..+
T Consensus 135 ~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 135 PGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred CCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 222245555553 799999998755444444442 443 447899999998765
No 272
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=76.22 E-value=21 Score=31.51 Aligned_cols=92 Identities=20% Similarity=0.263 Sum_probs=58.8
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCC--CCCccEEEEe
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDG--LVDIDFLVVD 121 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~--l~~fDfVFID 121 (218)
+++|+=||.|- .++|+..+ |.+++..+|.++...+.-+.+.. + .++.+|. .++.+. ...+|+++.+
T Consensus 2 ~v~dLFsG~Gg--~~~gl~~~----G~~~v~a~e~~~~a~~~~~~N~~-~---~~~~~Di--~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGG--FRLGLEKA----GFEIVAANEIDKSAAETYEANFP-N---KLIEGDI--TKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcch--HHHHHHHc----CCEEEEEEeCCHHHHHHHHHhCC-C---CCccCcc--ccCchhhcCCCCCEEEeC
Confidence 58898888886 67777654 46778888998865544333221 1 1566777 665543 3478999887
Q ss_pred C---------------Ccc--CcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 122 S---------------RRK--DFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 122 a---------------~K~--~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
- ++. .+.++++++ .+.| -+++.-||-
T Consensus 70 pPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P--~~~v~ENV~ 113 (275)
T cd00315 70 FPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKP--KYFLLENVK 113 (275)
T ss_pred CCChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCC--CEEEEEcCc
Confidence 3 111 355666666 5555 488999994
No 273
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=76.19 E-value=2.7 Score=41.05 Aligned_cols=101 Identities=23% Similarity=0.331 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHhc---CC-CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCc-eEE
Q 027826 25 HESGVAELVSAMAAGW---DA-RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFS-PQV 98 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~---~a-k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~-i~~ 98 (218)
..-..++.|+-+++-. ++ +-+|++=|+||. . |+|.|.+ -++ |.-+|.+++...-|+.++ .-|++ .+|
T Consensus 363 ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~--i--glala~~--~~~-ViGvEi~~~aV~dA~~nA~~NgisNa~F 435 (534)
T KOG2187|consen 363 TNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGT--I--GLALARG--VKR-VIGVEISPDAVEDAEKNAQINGISNATF 435 (534)
T ss_pred cCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCc--e--ehhhhcc--ccc-eeeeecChhhcchhhhcchhcCccceee
Confidence 3445677787777632 33 567889999998 3 3444332 246 555688888777777665 78998 999
Q ss_pred EEcCCCchhhcCCCC-----Ccc-EEEEeCC-ccCcHHHHHHh
Q 027826 99 ITGEADDEELMDGLV-----DID-FLVVDSR-RKDFARVLRLA 134 (218)
Q Consensus 99 i~GdA~~~e~L~~l~-----~fD-fVFIDa~-K~~Y~~~~~~~ 134 (218)
+.|.| .+.++.+. +=+ .+.||-. ++....+...+
T Consensus 436 i~gqa--E~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l 476 (534)
T KOG2187|consen 436 IVGQA--EDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKAL 476 (534)
T ss_pred eecch--hhccchhcccCCCCCceEEEECCCcccccHHHHHHH
Confidence 99999 88888763 345 7888866 45555555555
No 274
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=75.46 E-value=7.3 Score=30.35 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=44.3
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCC---ccHHHHHHHHhhCCCceEEEEcCCCchhhcCCC-------
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDE---RSRSEYVHALGEAGFSPQVITGEADDEELMDGL------- 112 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~---~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l------- 112 (218)
|.+|=+|.+.| +|-++. .++...+++.|.....+ +...+....+...+..+.++..|....+.+.++
T Consensus 1 k~~lItGa~~g-iG~~~a--~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (167)
T PF00106_consen 1 KTVLITGASSG-IGRALA--RALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKR 77 (167)
T ss_dssp EEEEEETTTSH-HHHHHH--HHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCH-HHHHHH--HHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccccc
Confidence 45677888877 577754 33333356545544555 222333344556665588888887444334332
Q ss_pred -CCccEEEEeCC
Q 027826 113 -VDIDFLVVDSR 123 (218)
Q Consensus 113 -~~fDfVFIDa~ 123 (218)
.++|.+|.=+.
T Consensus 78 ~~~ld~li~~ag 89 (167)
T PF00106_consen 78 FGPLDILINNAG 89 (167)
T ss_dssp HSSESEEEEECS
T ss_pred cccccccccccc
Confidence 27777776554
No 275
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=75.02 E-value=10 Score=35.53 Aligned_cols=77 Identities=17% Similarity=0.091 Sum_probs=46.3
Q ss_pred eEEEeC-cC-----cchHHHHHHHHHhcCCCCcEE-EEEEcCCccHHHH---HHHHhhCCCceEEEEcCCCchhhcCCCC
Q 027826 44 LIVETW-SH-----GGATATSVGLAVASRHTGGRH-VCLVPDERSRSEY---VHALGEAGFSPQVITGEADDEELMDGLV 113 (218)
Q Consensus 44 ~ILEiG-t~-----~GyiGsaiglA~a~~~~~G~v-itt~e~~~~~~~~---a~~~~~agl~i~~i~GdA~~~e~L~~l~ 113 (218)
.||=-+ |+ +|| ||+++....+...+-+. |...|..|...-. +..+.+.|+.+.++...+ .-.+=...
T Consensus 169 ~ILThcnsg~Lat~~g~-gtal~~i~~a~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GIpvtlI~Dsa--~~~~m~~~ 245 (363)
T PRK05772 169 TVLTQCNAGGLATGTGL-GTALAPVKLAKALGMSVSVIAPETRPWLQGSRLTVYELMEEGIKVTLITDTA--VGLVMYKD 245 (363)
T ss_pred EEEEecCCcchhhcccc-ccHHHHHHHHHHCCCeEEEEECCCCccchhHHHHHHHHHHCCCCEEEEehhH--HHHHHhhc
Confidence 577765 22 454 67888444333322221 4445666654432 456678999999998887 55443334
Q ss_pred CccEEEEeCC
Q 027826 114 DIDFLVVDSR 123 (218)
Q Consensus 114 ~fDfVFIDa~ 123 (218)
.+|+|++-|+
T Consensus 246 ~Vd~VivGAD 255 (363)
T PRK05772 246 MVNNVMVGAD 255 (363)
T ss_pred CCCEEEECcc
Confidence 6888888776
No 276
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=74.49 E-value=16 Score=33.55 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=56.9
Q ss_pred HHHHHHHHhc----CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh--h---------CCCc
Q 027826 31 ELVSAMAAGW----DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG--E---------AGFS 95 (218)
Q Consensus 31 ~fL~~L~~~~----~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~--~---------agl~ 95 (218)
.++...+... +..+||++|||-|- -..=+..+ . -+.+|.++.......++++.+. . ..+.
T Consensus 48 ~LI~~~~~~~~~~~~~~~VLDl~CGkGG--DL~Kw~~~-~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~ 122 (331)
T PF03291_consen 48 VLIQKYAKKVKQNRPGLTVLDLCCGKGG--DLQKWQKA-K--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFI 122 (331)
T ss_dssp HHHHHHCHCCCCTTTT-EEEEET-TTTT--THHHHHHT-T---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCE
T ss_pred HHHHHHHHhhhccCCCCeEEEecCCCch--hHHHHHhc-C--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccch
Confidence 3455555433 66899999999664 33324443 2 2576776554444455544441 1 1233
Q ss_pred eEEEEcCCCchhhcCCC----CCccEEEEeCC-------ccCcHHHHHHh-cCCCCCeEEEE
Q 027826 96 PQVITGEADDEELMDGL----VDIDFLVVDSR-------RKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 96 i~~i~GdA~~~e~L~~l----~~fDfVFIDa~-------K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
.+++.+|+....+...+ .+||+|=+=-. .+.-...++-+ ..+++||++|.
T Consensus 123 a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 123 AEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp EEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred hheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 78899999221222222 28998865432 12223355555 55555999875
No 277
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=74.45 E-value=13 Score=32.70 Aligned_cols=87 Identities=23% Similarity=0.199 Sum_probs=50.0
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEc------CCCchhhcCCCC--CccEEEEeCCccCcH
Q 027826 57 TSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITG------EADDEELMDGLV--DIDFLVVDSRRKDFA 128 (218)
Q Consensus 57 saiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~G------dA~~~e~L~~l~--~fDfVFIDa~K~~Y~ 128 (218)
=++.||.++.+.+..++.....++ ....+.+.+.|+.+..+.+ |+ .++++.+. ..|+|++|.- .--.
T Consensus 19 Rcl~LA~~l~~~g~~v~f~~~~~~--~~~~~~i~~~g~~v~~~~~~~~~~~d~--~~~~~~l~~~~~d~vV~D~y-~~~~ 93 (279)
T TIGR03590 19 RCLTLARALHAQGAEVAFACKPLP--GDLIDLLLSAGFPVYELPDESSRYDDA--LELINLLEEEKFDILIVDHY-GLDA 93 (279)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCC--HHHHHHHHHcCCeEEEecCCCchhhhH--HHHHHHHHhcCCCEEEEcCC-CCCH
Confidence 566799988654556433333322 2234566788988555543 34 44555454 7899999985 3333
Q ss_pred HHHHHhcCCCCCeEEEEeCCC
Q 027826 129 RVLRLANLSSRGAVLVCKNAY 149 (218)
Q Consensus 129 ~~~~~~~L~~~GgvIV~DNvl 149 (218)
+|++.++..- -=++++||..
T Consensus 94 ~~~~~~k~~~-~~l~~iDD~~ 113 (279)
T TIGR03590 94 DWEKLIKEFG-RKILVIDDLA 113 (279)
T ss_pred HHHHHHHHhC-CeEEEEecCC
Confidence 4555553211 1367777764
No 278
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=74.03 E-value=8.2 Score=35.79 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=48.0
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhh-C--CCceEEEEcCCCchhhcCCC-C--C
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGE-A--GFSPQVITGEADDEELMDGL-V--D 114 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~-a--gl~i~~i~GdA~~~e~L~~l-~--~ 114 (218)
++++||=.| +.|||||...|+.- ..+=.+++.+..+......-+...+ . +=.|.|.+||-.+.+.|.++ + .
T Consensus 1 ~~~~VLVtG-gaGyiGsht~l~L~--~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~ 77 (343)
T KOG1371|consen 1 GGKHVLVTG-GAGYIGSHTVLALL--KRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVK 77 (343)
T ss_pred CCcEEEEec-CCcceehHHHHHHH--hCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcC
Confidence 367788765 68999999776654 3233545544444433333333322 2 22399999999777888875 2 7
Q ss_pred ccEEEEeC
Q 027826 115 IDFLVVDS 122 (218)
Q Consensus 115 fDfVFIDa 122 (218)
||-|.-=|
T Consensus 78 fd~V~Hfa 85 (343)
T KOG1371|consen 78 FDAVMHFA 85 (343)
T ss_pred CceEEeeh
Confidence 88765433
No 279
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=73.97 E-value=12 Score=34.66 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCCCcE-EEEEEcCCccHHH---HHHHHhhCCCceEEEEcCCCchhhcCCCCCccEEEEeCC
Q 027826 56 ATSVGLAVASRHTGGR-HVCLVPDERSRSE---YVHALGEAGFSPQVITGEADDEELMDGLVDIDFLVVDSR 123 (218)
Q Consensus 56 GsaiglA~a~~~~~G~-vitt~e~~~~~~~---~a~~~~~agl~i~~i~GdA~~~e~L~~l~~fDfVFIDa~ 123 (218)
||++++...+.+.+-+ .|...|..|...- .++.+.+.|+.+.++...+ .-.+=....+|+|++-|+
T Consensus 155 gTal~~l~~A~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~Dsa--~~~~M~~~~Vd~VivGAd 224 (329)
T PRK06371 155 GTALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELAQEGIDHAIIADNA--AGYFMRKKEIDLVIVGAD 224 (329)
T ss_pred hhHHHHHHHHHHcCCeeEEEECCCCCcchHHHHHHHHHHHCCCCEEEEcccH--HHHHhhhcCCCEEEECcc
Confidence 6778754444332221 1444565665443 2566779999999888777 554333346888888766
No 280
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=73.62 E-value=35 Score=29.98 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=61.1
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCc--eEEEEcCCCchhhcCCCCCccEEE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS--PQVITGEADDEELMDGLVDIDFLV 119 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~--i~~i~GdA~~~e~L~~l~~fDfVF 119 (218)
.++..|||==+|+++. |-.-.+ ..+ .+-.|.++.-.+.| +++.++++. |+++.||. +..|..=+.+|.+.
T Consensus 18 ~~iaDIGsDHAYLp~~--Lv~~~~--~~~-~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg--l~~l~~~d~~d~iv 90 (226)
T COG2384 18 ARIADIGSDHAYLPIY--LVKNNP--AST-AVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG--LAVLELEDEIDVIV 90 (226)
T ss_pred CceeeccCchhHhHHH--HHhcCC--cce-EEEeecccCHHHHHHHHHHhcCCcceEEEeccCC--ccccCccCCcCEEE
Confidence 3399999999993332 443322 234 33445666655555 556788988 99999999 66666545899999
Q ss_pred EeCCccCc-HHHHHHh--cCCCCCeEEEEeCC
Q 027826 120 VDSRRKDF-ARVLRLA--NLSSRGAVLVCKNA 148 (218)
Q Consensus 120 IDa~K~~Y-~~~~~~~--~L~~~GgvIV~DNv 148 (218)
|=+--+.- .+.++.- +|...--+|+..|.
T Consensus 91 IAGMGG~lI~~ILee~~~~l~~~~rlILQPn~ 122 (226)
T COG2384 91 IAGMGGTLIREILEEGKEKLKGVERLILQPNI 122 (226)
T ss_pred EeCCcHHHHHHHHHHhhhhhcCcceEEECCCC
Confidence 98763322 2344444 33221246655554
No 281
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=73.55 E-value=67 Score=29.97 Aligned_cols=112 Identities=7% Similarity=0.094 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCcc--------HH-HHHHHHhhCCCceEEE
Q 027826 29 VAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERS--------RS-EYVHALGEAGFSPQVI 99 (218)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~--------~~-~~a~~~~~agl~i~~i 99 (218)
....|..++....+++|+=|| .|+ +++-+|..+...+-+ |+.++..+. .. ...+.+.+.|+. ++
T Consensus 135 ~~~~l~~~l~~~~~~~vvViG--gG~--ig~E~A~~l~~~g~~-Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~--i~ 207 (438)
T PRK13512 135 DTDAIDQFIKANQVDKALVVG--AGY--ISLEVLENLYERGLH-PTLIHRSDKINKLMDADMNQPILDELDKREIP--YR 207 (438)
T ss_pred HHHHHHHHHhhcCCCEEEEEC--CCH--HHHHHHHHHHhCCCc-EEEEecccccchhcCHHHHHHHHHHHHhcCCE--EE
Confidence 444455555555789999998 478 555567666554445 666665432 11 122344566754 32
Q ss_pred EcCC------CchhhcCCCC--CccEEEEeCCccCcHHHHHHh--cCCCCCeEEEEeCCC
Q 027826 100 TGEA------DDEELMDGLV--DIDFLVVDSRRKDFARVLRLA--NLSSRGAVLVCKNAY 149 (218)
Q Consensus 100 ~GdA------~~~e~L~~l~--~fDfVFIDa~K~~Y~~~~~~~--~L~~~GgvIV~DNvl 149 (218)
.+.. .... +.+-. ++|+|++=.--.-..++++.. .+.+ .|.|.+|.-+
T Consensus 208 ~~~~v~~i~~~~v~-~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~-~G~i~Vd~~~ 265 (438)
T PRK13512 208 LNEEIDAINGNEVT-FKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDD-KGFIPVNDKF 265 (438)
T ss_pred ECCeEEEEeCCEEE-ECCCCEEEeCEEEECcCCCcChHHHHhcCcccCC-CCcEEECCCc
Confidence 2221 0011 11111 689999876654445566665 3334 4555566544
No 282
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=73.33 E-value=24 Score=32.67 Aligned_cols=123 Identities=12% Similarity=0.154 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGE 102 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~Gd 102 (218)
.-.|...+|=+.+++..++..++= +.+|. +++-++ .++..+|.++++....-.......+.+...|+.+.+..-+
T Consensus 50 ~~np~~~~lE~~lA~l~g~~~~l~--~~sG~--~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~~d 125 (385)
T PRK08574 50 EENPTLRPLEEALAKLEGGVDALA--FNSGM--AAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAYPS 125 (385)
T ss_pred CCCccHHHHHHHHHHHhCCCcEEE--eCCHH--HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEECCC
Confidence 456778888889999999988876 45566 444322 2223346675554322221222222234456554443222
Q ss_pred CCchhhcCCCC--CccEEEEeCCcc--CcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 103 ADDEELMDGLV--DIDFLVVDSRRK--DFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 103 A~~~e~L~~l~--~fDfVFIDa~K~--~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
. .++.+.+. ..++||+..--. ...--++.+ .+. +.|..+|+||+...|
T Consensus 126 ~--~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~ 179 (385)
T PRK08574 126 T--EDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATP 179 (385)
T ss_pred H--HHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 2 33333343 578999975321 111123333 332 448899999997544
No 283
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=73.04 E-value=31 Score=32.83 Aligned_cols=119 Identities=11% Similarity=0.073 Sum_probs=69.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHH-hcCCCCcEEEEEEcCCccHHHH-HHHHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAV-ASRHTGGRHVCLVPDERSRSEY-VHALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~-a~~~~~G~vitt~e~~~~~~~~-a~~~~~agl~i~~i~G 101 (218)
.-.|.+.+|=..+++..+++..+= +.+|. +||.++. ++..+|.++|++-..-...... ...+...|+.++++..
T Consensus 58 ~~nPtv~~lE~~la~leg~~~av~--~~SG~--aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~ 133 (432)
T PRK06702 58 IGNPTLAAFEQKLAELEGGVGAVA--TASGQ--AAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP 133 (432)
T ss_pred CCCcHHHHHHHHHHHHhCCCcEEE--ECCHH--HHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence 347999999999999999988865 67776 6655332 2234467866542211111222 2234678888777654
Q ss_pred CCCchhhcCC-CC-CccEEEEeCCccCcHH----HHHHh-cCC-CCCeEEEEeCCC
Q 027826 102 EADDEELMDG-LV-DIDFLVVDSRRKDFAR----VLRLA-NLS-SRGAVLVCKNAY 149 (218)
Q Consensus 102 dA~~~e~L~~-l~-~fDfVFIDa~K~~Y~~----~~~~~-~L~-~~GgvIV~DNvl 149 (218)
.. +.+.++. +. .-.+||+..- . .+- -++.+ .+. +.|-++|+||++
T Consensus 134 ~~-d~~~l~~~I~~~Tk~I~~e~p-g-nP~~~v~Di~~I~~iA~~~gi~livD~T~ 186 (432)
T PRK06702 134 NL-TADEIVALANDKTKLVYAESL-G-NPAMNVLNFKEFSDAAKELEVPFIVDNTL 186 (432)
T ss_pred CC-CHHHHHHhCCcCCeEEEEEcC-C-CccccccCHHHHHHHHHHcCCEEEEECCC
Confidence 21 1233443 33 5678888652 2 221 23333 333 448899999997
No 284
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=72.27 E-value=3.6 Score=36.82 Aligned_cols=100 Identities=9% Similarity=0.107 Sum_probs=61.7
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCC-CCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCC-CccEEE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRH-TGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLV-DIDFLV 119 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~-~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~-~fDfVF 119 (218)
-+.++.|||+.|| ++.-+.. .=++ ++-.+..-.+.+..+.-.+-++.....+||- |.|+-=+ ++|+|.
T Consensus 73 fp~a~diGcs~G~------v~rhl~~e~vek-li~~DtS~~M~~s~~~~qdp~i~~~~~v~DE---E~Ldf~ens~DLii 142 (325)
T KOG2940|consen 73 FPTAFDIGCSLGA------VKRHLRGEGVEK-LIMMDTSYDMIKSCRDAQDPSIETSYFVGDE---EFLDFKENSVDLII 142 (325)
T ss_pred Ccceeecccchhh------hhHHHHhcchhh-eeeeecchHHHHHhhccCCCceEEEEEecch---hcccccccchhhhh
Confidence 3568999999999 4444432 1245 4444555555554443334555566677886 6777323 899987
Q ss_pred Ee---CCccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc
Q 027826 120 VD---SRRKDFARVLRLA-NLSSRGAVLVCKNAYSRND 153 (218)
Q Consensus 120 ID---a~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~ 153 (218)
-- .|-.+.|..+..| ..++|.|+.++- .+.|+
T Consensus 143 sSlslHW~NdLPg~m~~ck~~lKPDg~Fias--mlggd 178 (325)
T KOG2940|consen 143 SSLSLHWTNDLPGSMIQCKLALKPDGLFIAS--MLGGD 178 (325)
T ss_pred hhhhhhhhccCchHHHHHHHhcCCCccchhH--Hhccc
Confidence 54 4556777888888 334558887653 34453
No 285
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=71.74 E-value=31 Score=33.17 Aligned_cols=78 Identities=14% Similarity=0.225 Sum_probs=51.6
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEcCCCchhhcCC-CC-CccEE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITGEADDEELMDG-LV-DIDFL 118 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~GdA~~~e~L~~-l~-~fDfV 118 (218)
.|||+.=+.-|= -|..+|.-+.. .|. |..-+.+..+...-+ ++.+.|+. .-+...|+ .+.-.+ +. +||=|
T Consensus 243 ERIlDmcAAPGG--KTt~IAalMkn-~G~-I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~--~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 243 ERILDMCAAPGG--KTTHIAALMKN-TGV-IFANDSNENRLKSLKANLHRLGVTNTIVSNYDG--REFPEKEFPGSFDRV 316 (460)
T ss_pred CeecchhcCCCc--hHHHHHHHHcC-Cce-EEecccchHHHHHHHHHHHHhCCCceEEEccCc--ccccccccCccccee
Confidence 489997555553 55557776654 566 555666666655544 44699998 66777888 654322 33 79999
Q ss_pred EEeCCccC
Q 027826 119 VVDSRRKD 126 (218)
Q Consensus 119 FIDa~K~~ 126 (218)
++||.-+.
T Consensus 317 LLDAPCSG 324 (460)
T KOG1122|consen 317 LLDAPCSG 324 (460)
T ss_pred eecCCCCC
Confidence 99986444
No 286
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=71.14 E-value=33 Score=31.79 Aligned_cols=92 Identities=14% Similarity=0.200 Sum_probs=52.0
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCC--CCccEEEEe
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGL--VDIDFLVVD 121 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l--~~fDfVFID 121 (218)
+|+=+|+ |.+|.. +|..+...+-. +..++.+++.....+ ...| ++++.||++..+.|.+. ..+|.|++-
T Consensus 2 ~viIiG~--G~ig~~--~a~~L~~~g~~-v~vid~~~~~~~~~~--~~~~--~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 2 KIIIVGA--GQVGYT--LAENLSGENND-VTVIDTDEERLRRLQ--DRLD--VRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred EEEEECC--CHHHHH--HHHHHHhCCCc-EEEEECCHHHHHHHH--hhcC--EEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 5677665 886666 45544443445 566777775433222 1233 78889999555677765 489999986
Q ss_pred CCccCcHHHHHH-h-cCCCCCeEEE
Q 027826 122 SRRKDFARVLRL-A-NLSSRGAVLV 144 (218)
Q Consensus 122 a~K~~Y~~~~~~-~-~L~~~GgvIV 144 (218)
........+.-. + .+.+.-.+|+
T Consensus 73 ~~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 73 TDSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred cCChHHHHHHHHHHHHhcCCCeEEE
Confidence 653333332222 3 3334344554
No 287
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=71.08 E-value=14 Score=33.55 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=44.9
Q ss_pred CeEEEeCcC-----cchHHHHHHHHHhcCCCC--cEEEEEEcCCccHH---HHHHHHhhCCCceEEEEcCCCchhhcCCC
Q 027826 43 RLIVETWSH-----GGATATSVGLAVASRHTG--GRHVCLVPDERSRS---EYVHALGEAGFSPQVITGEADDEELMDGL 112 (218)
Q Consensus 43 k~ILEiGt~-----~GyiGsaiglA~a~~~~~--G~vitt~e~~~~~~---~~a~~~~~agl~i~~i~GdA~~~e~L~~l 112 (218)
..||=.|-+ .|| ||.+++...+.+.+ =+ |...|..|... ..++.+.++|+.+.++.-.+ .-.+=+-
T Consensus 120 ~~ILT~~~Sg~lat~~~-~tv~~~l~~A~~~g~~~~-V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa--~~~~m~~ 195 (303)
T TIGR00524 120 DTVLTHCNAGALATSDY-GTALGVIRSAWEDGKRIR-VIACETRPRNQGSRLTAWELMQDGIDVTLITDSM--AAYFMQK 195 (303)
T ss_pred CEEEEecCCccccccCc-chHHHHHHHHHHcCCceE-EEECCCCCccchHHHHHHHHHHCCCCEEEEChhH--HHHHccc
Confidence 357765533 233 45556433332212 23 44456556543 24677789999999998777 5543322
Q ss_pred CCccEEEEeCC
Q 027826 113 VDIDFLVVDSR 123 (218)
Q Consensus 113 ~~fDfVFIDa~ 123 (218)
...|+||+-|+
T Consensus 196 ~~vd~VlvGAd 206 (303)
T TIGR00524 196 GEIDAVIVGAD 206 (303)
T ss_pred cCCCEEEEccc
Confidence 37899998776
No 288
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=71.07 E-value=25 Score=32.42 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCCC--cEEEEEEcCCccHHHH---HHHHhhCCCceEEEEcCCCchhhcCCCCCccEEEEeCC
Q 027826 56 ATSVGLAVASRHTG--GRHVCLVPDERSRSEY---VHALGEAGFSPQVITGEADDEELMDGLVDIDFLVVDSR 123 (218)
Q Consensus 56 GsaiglA~a~~~~~--G~vitt~e~~~~~~~~---a~~~~~agl~i~~i~GdA~~~e~L~~l~~fDfVFIDa~ 123 (218)
||++++-..+.+.+ -+ |...|..|...-. ++.+.++|+.++++...+ .-.+=....+|+|++-|+
T Consensus 165 gtal~~l~~A~~~g~~~~-V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsa--v~~~m~~~~vd~VivGAd 234 (331)
T TIGR00512 165 GTALGVIRSAHEKGRLEH-VYADETRPRLQGARLTAWELVQEGIPATLITDSM--AAHLMKHGEVDAVIVGAD 234 (331)
T ss_pred chHHHHHHHHHHcCCceE-EEECCCCchhhHHHHHHHHHHHCCCCEEEEcccH--HHHHhcccCCCEEEEccc
Confidence 57777443332222 23 4455666654432 566789999999998877 554433347899988776
No 289
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=70.88 E-value=46 Score=30.46 Aligned_cols=105 Identities=15% Similarity=0.009 Sum_probs=56.7
Q ss_pred HHHhcCCC-eEEEeCcCcchHHHHHHHHHhcCCCC-cEEEEEEcCCccHHHH-HHHHhhCCCc---eEEEEcCCCchhh-
Q 027826 36 MAAGWDAR-LIVETWSHGGATATSVGLAVASRHTG-GRHVCLVPDERSRSEY-VHALGEAGFS---PQVITGEADDEEL- 108 (218)
Q Consensus 36 L~~~~~ak-~ILEiGt~~GyiGsaiglA~a~~~~~-G~vitt~e~~~~~~~~-a~~~~~agl~---i~~i~GdA~~~e~- 108 (218)
+++..++. .|||+|||.|. =+--|..++...+ ....+-++.+.+..+. ++.+....+. ++-++||- .+-
T Consensus 70 Ia~~i~~~~~lIELGsG~~~--Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy--~~~l 145 (319)
T TIGR03439 70 IAASIPSGSMLVELGSGNLR--KVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTY--DDGL 145 (319)
T ss_pred HHHhcCCCCEEEEECCCchH--HHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecH--HHHH
Confidence 44455544 79999999987 4444555554221 2225566777655443 4455534444 44488987 443
Q ss_pred --cCC--CC-CccEEEEeC-CccC-----cHHHHHHh-c-CC-CCCeEEE
Q 027826 109 --MDG--LV-DIDFLVVDS-RRKD-----FARVLRLA-N-LS-SRGAVLV 144 (218)
Q Consensus 109 --L~~--l~-~fDfVFIDa-~K~~-----Y~~~~~~~-~-L~-~~GgvIV 144 (218)
|+. .. ...++|.=+ .-.+ -..++..+ . .+ +.++++|
T Consensus 146 ~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 146 AWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred hhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 433 22 345555544 3333 34566666 5 44 5444444
No 290
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=70.88 E-value=16 Score=32.97 Aligned_cols=92 Identities=21% Similarity=0.260 Sum_probs=52.5
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEc--CCCchhhc--CCCCCccEEE
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITG--EADDEELM--DGLVDIDFLV 119 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~G--dA~~~e~L--~~l~~fDfVF 119 (218)
+|+=+|+ |.+|+.+|...+-. |..|+.+-+++. .+.+++.|+.++-..+ ........ ..+.++|+||
T Consensus 2 kI~IlGa--GAvG~l~g~~L~~~---g~~V~~~~R~~~----~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 2 KILILGA--GAIGSLLGARLAKA---GHDVTLLVRSRR----LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred eEEEECC--cHHHHHHHHHHHhC---CCeEEEEecHHH----HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence 4455555 55788876333311 344655555442 3445555877554444 11001111 1134899999
Q ss_pred EeCCccCcHHHHHHh-cCCCCCeEEE
Q 027826 120 VDSRRKDFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 120 IDa~K~~Y~~~~~~~-~L~~~GgvIV 144 (218)
|...--+-.+.++.+ ++.++..+|+
T Consensus 73 v~vKa~q~~~al~~l~~~~~~~t~vl 98 (307)
T COG1893 73 VTVKAYQLEEALPSLAPLLGPNTVVL 98 (307)
T ss_pred EEeccccHHHHHHHhhhcCCCCcEEE
Confidence 999888888899998 6666566554
No 291
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=70.60 E-value=27 Score=32.47 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcCCccHHHHHH----HHhhCCCceEE
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSEYVH----ALGEAGFSPQV 98 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~~~~~~~~a~----~~~~agl~i~~ 98 (218)
.-.|...+|=..|++..+++.++= +.+|. ++|.++ .++..+|.++++.. +.+..... .+...|+.+.+
T Consensus 61 ~~~p~~~~le~~lA~l~g~~~~i~--~ssG~--~Ai~~~l~all~~GD~Vi~~~---~~y~~~~~~~~~~~~~~Gi~v~~ 133 (398)
T PRK08249 61 NTNPTVQAFEEKVRILEGAEAATA--FSTGM--AAISNTLYTFLKPGDRVVSIK---DTYGGTNKIFTEFLPRMGVDVTL 133 (398)
T ss_pred CCChHHHHHHHHHHHHhCCCeEEE--eCChH--HHHHHHHHHhcCCCCEEEEcC---CchHHHHHHHHHHHhhCCeEEEE
Confidence 567889999999999999988755 55565 555433 23334456755542 22222222 23356655443
Q ss_pred EEcCCCchhhcC-CCC-CccEEEEeCC--ccCcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 99 ITGEADDEELMD-GLV-DIDFLVVDSR--RKDFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 99 i~GdA~~~e~L~-~l~-~fDfVFIDa~--K~~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+... +.+.+. .+. .-++||+..- ......-++.+ .+. +.|.++|+||+...+
T Consensus 134 vd~~--d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~ 191 (398)
T PRK08249 134 CETG--DHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATP 191 (398)
T ss_pred cCCC--CHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCcc
Confidence 3222 234343 344 5789998643 21111223333 332 448899999997533
No 292
>PLN02427 UDP-apiose/xylose synthase
Probab=70.60 E-value=9.3 Score=34.74 Aligned_cols=78 Identities=12% Similarity=0.066 Sum_probs=42.4
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCC---C--ceEEEEcCCCchhhcCC-CC
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAG---F--SPQVITGEADDEELMDG-LV 113 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~ag---l--~i~~i~GdA~~~e~L~~-l~ 113 (218)
..+++||=. -++|+||+.+ +..+...+|..|..+..++... +.+...+ . .++++.||.++.+.+.. +.
T Consensus 12 ~~~~~VlVT-GgtGfIGs~l--v~~L~~~~g~~V~~l~r~~~~~---~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~ 85 (386)
T PLN02427 12 IKPLTICMI-GAGGFIGSHL--CEKLMTETPHKVLALDVYNDKI---KHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIK 85 (386)
T ss_pred ccCcEEEEE-CCcchHHHHH--HHHHHhcCCCEEEEEecCchhh---hhhhccccccCCCCeEEEEcCCCChHHHHHHhh
Confidence 356788854 4579988885 4444433343344445444221 1221111 1 28899999844444443 34
Q ss_pred CccEEEEeCC
Q 027826 114 DIDFLVVDSR 123 (218)
Q Consensus 114 ~fDfVFIDa~ 123 (218)
.+|.||-=|.
T Consensus 86 ~~d~ViHlAa 95 (386)
T PLN02427 86 MADLTINLAA 95 (386)
T ss_pred cCCEEEEccc
Confidence 6888876443
No 293
>PRK07503 methionine gamma-lyase; Provisional
Probab=69.98 E-value=32 Score=32.03 Aligned_cols=123 Identities=13% Similarity=0.108 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHH-hcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAV-ASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~-a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~G 101 (218)
.-.|...+|=..|++..++... |-+++|. +++-++. ++-.+|.++++.-..-..... ....+...|+.+.++-.
T Consensus 62 ~~~p~~~~le~~lA~l~g~~~~--i~~~sG~--~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 137 (403)
T PRK07503 62 ISNPTLALLEQRMASLEGGEAA--VALASGM--GAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDL 137 (403)
T ss_pred CCCchHHHHHHHHHHHhCCCcE--EEEcCHH--HHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCC
Confidence 5678899999999999998876 4466676 5554222 233346675553221111111 12223456766444433
Q ss_pred CCCchhhcC-CCC-CccEEEEeCC--ccCcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMD-GLV-DIDFLVVDSR--RKDFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~-~l~-~fDfVFIDa~--K~~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+- .+.|. .+. .-.+|++..- .-....-++.+ .+. +.|.++|.||+...+
T Consensus 138 ~d--~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~ 192 (403)
T PRK07503 138 TD--PAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTP 192 (403)
T ss_pred CC--HHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccc
Confidence 22 33333 343 6789998632 21222223333 332 448899999997544
No 294
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=69.51 E-value=36 Score=32.17 Aligned_cols=124 Identities=11% Similarity=0.135 Sum_probs=68.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEE
Q 027826 23 LSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVIT 100 (218)
Q Consensus 23 ~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~ 100 (218)
+.-.|....|-..|+...+++..+= |++|. +++-++ .++-.+|.++++....-..... ........|+++.++.
T Consensus 60 r~~~p~~~~Le~~lA~leg~~~al~--~~sG~--~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd 135 (431)
T PRK08248 60 RIMNPTTDVFEKRIAALEGGIGALA--VSSGQ--AAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVD 135 (431)
T ss_pred CCCCchHHHHHHHHHHHhCCCcEEE--ECCHH--HHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEEC
Confidence 4668889999999999999988876 45555 444322 1222346675554322111112 2233456787755553
Q ss_pred cCCCchhhcCC-CC-CccEEEEeCC--ccCcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 101 GEADDEELMDG-LV-DIDFLVVDSR--RKDFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 101 GdA~~~e~L~~-l~-~fDfVFIDa~--K~~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
.+- .+.+.+ ++ ..++|++..- .-....-++.+ ++. +.|.++|+||+...+
T Consensus 136 ~~d--~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~ 191 (431)
T PRK08248 136 PSD--PENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASP 191 (431)
T ss_pred CCC--HHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcc
Confidence 322 444443 43 6789999732 11111112222 332 348899999997533
No 295
>PRK06434 cystathionine gamma-lyase; Validated
Probab=69.30 E-value=53 Score=30.59 Aligned_cols=119 Identities=12% Similarity=0.099 Sum_probs=67.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcCCccHHHH-HHHHhhCCCceEEEE
Q 027826 23 LSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSEY-VHALGEAGFSPQVIT 100 (218)
Q Consensus 23 ~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~~~~~~~~-a~~~~~agl~i~~i~ 100 (218)
+.-.|.+.+|=..+++..+++.++= +.+|. ++|-++ .++..+|.++++........... ...+...|+.+.++-
T Consensus 60 r~~~P~~~~lE~~la~leg~~~av~--~sSG~--aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd 135 (384)
T PRK06434 60 RWGNPTVQAFEEKYAVLENAEHALS--FSSGM--GAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYID 135 (384)
T ss_pred CCCChhHHHHHHHHHHHhCCCcEEE--eCCHH--HHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEEC
Confidence 3568999999999999999998765 55665 454422 22234466766643221122222 234457887766664
Q ss_pred cCCCchhhcCCCC--CccEEEEeCCc--cCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 101 GEADDEELMDGLV--DIDFLVVDSRR--KDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 101 GdA~~~e~L~~l~--~fDfVFIDa~K--~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
-+. .+.+. ++ ...+||+..-. .....-++.+ .+.+.-++ ++||++
T Consensus 136 ~~~--~~~~~-l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~l-vVD~t~ 185 (384)
T PRK06434 136 TDR--LNSLD-FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHENDV-IVDATF 185 (384)
T ss_pred CCC--hhhee-ecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcCe-EEECCC
Confidence 443 33333 32 57888888642 2222233333 44433455 569996
No 296
>PLN02509 cystathionine beta-lyase
Probab=69.03 E-value=51 Score=31.64 Aligned_cols=122 Identities=11% Similarity=0.096 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCceEEEEcCC
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFSPQVITGEA 103 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~i~~i~GdA 103 (218)
-.|..-+|=+.+++..++..++= +.+|. ++|.++.++..+|.++|+....-....... ......|..+.++ +.
T Consensus 131 gnpt~~aLE~~lA~leg~e~ai~--~~SG~--aAi~~il~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~v--d~ 204 (464)
T PLN02509 131 GNPTRDALESLLAKLDKADRAFC--FTSGM--AALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRV--NT 204 (464)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEE--eCcHH--HHHHHHHHHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEe--CC
Confidence 34778888888899999888764 44565 556544444444667555422211111111 2234677664433 22
Q ss_pred Cchhhc-CCCC-CccEEEEeCCc--cCcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 104 DDEELM-DGLV-DIDFLVVDSRR--KDFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 104 ~~~e~L-~~l~-~fDfVFIDa~K--~~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
++.+.+ ..+. .-.+|++..-- .....-++.+ .+. +.|.++|+||+...+
T Consensus 205 ~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~ 259 (464)
T PLN02509 205 TNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSP 259 (464)
T ss_pred CCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence 113333 3444 56899987652 2334444444 443 448999999997544
No 297
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=69.01 E-value=4.6 Score=36.21 Aligned_cols=46 Identities=13% Similarity=0.228 Sum_probs=35.2
Q ss_pred eEEEEcCCCchhhcCCC---CCccEE----EEeCCccCcHHHHHHh-cCCCCCeEEE
Q 027826 96 PQVITGEADDEELMDGL---VDIDFL----VVDSRRKDFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 96 i~~i~GdA~~~e~L~~l---~~fDfV----FIDa~K~~Y~~~~~~~-~L~~~GgvIV 144 (218)
..+..||. .++-+.- ..||.| |||.. ++-.+|++.+ ++++|||+-|
T Consensus 146 ~sm~aGDF--~e~y~~~~~~~~~d~VvT~FFIDTA-~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 146 LSMCAGDF--LEVYGPDENKGSFDVVVTCFFIDTA-ENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred eeEecCcc--EEecCCcccCCcccEEEEEEEeech-HHHHHHHHHHHHHhccCCEEE
Confidence 55677777 7765543 378876 89996 7889999999 7777799766
No 298
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=68.60 E-value=7.5 Score=29.12 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=21.4
Q ss_pred CccEEEEeCCccCcHHHHHHh-cCCCCCeEEEE
Q 027826 114 DIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 114 ~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
.||++++|+...--++.+-.+ -.++-||++|.
T Consensus 11 e~~~~i~d~~~g~~pnal~a~~gtv~gGGllil 43 (92)
T PF08351_consen 11 EFDLLIFDAFEGFDPNALAALAGTVRGGGLLIL 43 (92)
T ss_dssp -BSSEEEE-SS---HHHHHHHHTTB-TT-EEEE
T ss_pred ccCEEEEEccCCCCHHHHHHHhcceecCeEEEE
Confidence 899999999999999999998 66666998764
No 299
>PRK05876 short chain dehydrogenase; Provisional
Probab=68.46 E-value=21 Score=30.84 Aligned_cols=81 Identities=21% Similarity=0.231 Sum_probs=46.5
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
+.-|.+|=.|.+.| ||.+++...+ ..|.+++.+....+...+..+.+...|..+.++..|.++.+.+.+
T Consensus 4 ~~~k~vlVTGas~g-IG~ala~~La--~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 4 FPGRGAVITGGASG-IGLATGTEFA--RRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred cCCCEEEEeCCCch-HHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34578888888877 6888653333 335675544333222333334454456557777778743333322
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
+.++|.++.-|.
T Consensus 81 ~g~id~li~nAg 92 (275)
T PRK05876 81 LGHVDVVFSNAG 92 (275)
T ss_pred cCCCCEEEECCC
Confidence 236898887664
No 300
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=68.40 E-value=75 Score=28.50 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=40.0
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCC-C-c-eEEEEcCCCchhhcCCCCCccEEE
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAG-F-S-PQVITGEADDEELMDGLVDIDFLV 119 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~ag-l-~-i~~i~GdA~~~e~L~~l~~fDfVF 119 (218)
+|.=||+ |++|++++++.+....... ++.++.++++.. .+..+..+. + . ..+..+| .+ .+..-|+||
T Consensus 2 kI~IIGa--G~VG~~~a~~l~~~g~~~e-v~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d---~~---~l~~aDiVi 72 (308)
T cd05292 2 KVAIVGA--GFVGSTTAYALLLRGLASE-IVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGD---YA---DCKGADVVV 72 (308)
T ss_pred EEEEECC--CHHHHHHHHHHHHcCCCCE-EEEEECCchhhhhHHHHHHccccccCCeEEeeCC---HH---HhCCCCEEE
Confidence 4666787 7889998876654421134 666677766543 233333221 1 1 3333232 22 355789999
Q ss_pred EeCCc
Q 027826 120 VDSRR 124 (218)
Q Consensus 120 IDa~K 124 (218)
+=+..
T Consensus 73 ita~~ 77 (308)
T cd05292 73 ITAGA 77 (308)
T ss_pred EccCC
Confidence 97664
No 301
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=67.77 E-value=10 Score=27.20 Aligned_cols=68 Identities=21% Similarity=0.322 Sum_probs=40.8
Q ss_pred EEcCCccHHHHH-HHHhhCCCc-eEEEEcCCCchhhcCCCC--CccEEEEeCCc--cCcHHHHHHh-cCCCCCeEEEE
Q 027826 75 LVPDERSRSEYV-HALGEAGFS-PQVITGEADDEELMDGLV--DIDFLVVDSRR--KDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 75 t~e~~~~~~~~a-~~~~~agl~-i~~i~GdA~~~e~L~~l~--~fDfVFIDa~K--~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
+++.++...... +.+...|+. +. ...++ .+.+..+. .||+|++|..- ....++++.+ ...+...+|+.
T Consensus 3 ivd~~~~~~~~l~~~l~~~~~~~v~-~~~~~--~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~ 77 (112)
T PF00072_consen 3 IVDDDPEIRELLEKLLERAGYEEVT-TASSG--EEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVV 77 (112)
T ss_dssp EEESSHHHHHHHHHHHHHTTEEEEE-EESSH--HHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEE
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEE-EECCH--HHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEe
Confidence 445666554443 455678874 44 45666 66666653 89999999653 4555666666 22233455543
No 302
>PRK06172 short chain dehydrogenase; Provisional
Probab=67.63 E-value=25 Score=29.37 Aligned_cols=79 Identities=14% Similarity=0.213 Sum_probs=46.0
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHH-HHHHHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRS-EYVHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~-~~a~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
..|+||=.|.+.| ||.++. ..+.+.+.+++.+ ..+++.. ...+.+...+-.+.++.+|.+..+.+..
T Consensus 6 ~~k~ilItGas~~-iG~~ia--~~l~~~G~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 6 SGKVALVTGGAAG-IGRATA--LAFAREGAKVVVA-DRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCEEEEeCCCch-HHHHHH--HHHHHcCCEEEEE-eCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4588999888777 688865 3232335575444 4554432 2334444555457888888844333332
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
+.++|.++.-+.
T Consensus 82 ~g~id~li~~ag 93 (253)
T PRK06172 82 YGRLDYAFNNAG 93 (253)
T ss_pred hCCCCEEEECCC
Confidence 236788886653
No 303
>PRK06139 short chain dehydrogenase; Provisional
Probab=67.15 E-value=20 Score=32.38 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=47.1
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
.-+.||=.|.+.| ||.++... +...|.+++.+ ..+++. .+..+.+...|..+.++..|.++.+.+.+
T Consensus 6 ~~k~vlITGAs~G-IG~aia~~--la~~G~~Vvl~-~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 6 HGAVVVITGASSG-IGQATAEA--FARRGARLVLA-ARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCCEEEEcCCCCH-HHHHHHHH--HHHCCCEEEEE-ECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 4578898888888 68886533 33336675544 455443 33344555566666677777744343333
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
+.++|.++.-|.
T Consensus 82 ~g~iD~lVnnAG 93 (330)
T PRK06139 82 GGRIDVWVNNVG 93 (330)
T ss_pred cCCCCEEEECCC
Confidence 247899887664
No 304
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=67.06 E-value=26 Score=31.08 Aligned_cols=90 Identities=18% Similarity=0.209 Sum_probs=47.0
Q ss_pred eCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhC----CCceEEEE-cCCCchhhcCCCCCccEEEEe
Q 027826 48 TWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEA----GFSPQVIT-GEADDEELMDGLVDIDFLVVD 121 (218)
Q Consensus 48 iGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~a----gl~i~~i~-GdA~~~e~L~~l~~fDfVFID 121 (218)
||+ |++|++++.+.+...-. . |+.++.++++.... ..+.++ +...++.. +| .+ .+..-|+|++=
T Consensus 4 IGa--G~vG~~ia~~la~~~l~-e-V~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d---~~---~l~dADiVIit 73 (300)
T cd01339 4 IGA--GNVGATLAQLLALKELG-D-VVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND---YE---DIAGSDVVVIT 73 (300)
T ss_pred ECC--CHHHHHHHHHHHhCCCc-E-EEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC---HH---HhCCCCEEEEe
Confidence 555 88888887666554322 5 55566666654321 112221 11134432 22 22 34577999984
Q ss_pred CCc----------------cCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 122 SRR----------------KDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 122 a~K----------------~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
+.. ..+.++++.+ +..|++-+|++=|
T Consensus 74 ~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 74 AGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 421 1233444444 5567666677777
No 305
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=66.70 E-value=42 Score=30.48 Aligned_cols=99 Identities=20% Similarity=0.184 Sum_probs=57.4
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH--h----hCCCceEEEE-cCCCchhhcCC
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL--G----EAGFSPQVIT-GEADDEELMDG 111 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~--~----~agl~i~~i~-GdA~~~e~L~~ 111 (218)
+.+.++|.=||+ |-+|+++++..+...- .. ++.++.+++... ++.+ . ..+...++.. +|- + .
T Consensus 3 ~~~~~KI~IIGa--G~vG~~ia~~la~~gl-~~-i~LvDi~~~~~~-~~~ld~~~~~~~~~~~~~I~~~~d~---~---~ 71 (321)
T PTZ00082 3 MIKRRKISLIGS--GNIGGVMAYLIVLKNL-GD-VVLFDIVKNIPQ-GKALDISHSNVIAGSNSKVIGTNNY---E---D 71 (321)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHhCCC-Ce-EEEEeCCCchhh-HHHHHHHhhhhccCCCeEEEECCCH---H---H
Confidence 456689999995 6678998876665432 35 555677776532 2222 1 1222245553 332 3 3
Q ss_pred CCCccEEEEeCCcc---------------------CcHHHHHHh-cCCCCCeEEEEeCC
Q 027826 112 LVDIDFLVVDSRRK---------------------DFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 112 l~~fDfVFIDa~K~---------------------~Y~~~~~~~-~L~~~GgvIV~DNv 148 (218)
+..-|||++=+... .+.++++.+ +..|++=+|++-|-
T Consensus 72 l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP 130 (321)
T PTZ00082 72 IAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNP 130 (321)
T ss_pred hCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 45789999955321 134445555 56676668888883
No 306
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=66.44 E-value=27 Score=28.82 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=44.4
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHH-HHHHHHhhCCCceEEEEcCCCchhhcCC-------
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRS-EYVHALGEAGFSPQVITGEADDEELMDG------- 111 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~-~~a~~~~~agl~i~~i~GdA~~~e~L~~------- 111 (218)
+..++||=.|.+.| +|.++. ..+.+.+.+++.+ ..+++.. ...+.+...+-.++++.+|..+.+.+.+
T Consensus 4 ~~~~~ilItGasg~-iG~~l~--~~l~~~g~~V~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12826 4 LEGRVALVTGAARG-IGRAIA--VRLAADGAEVIVV-DICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVE 79 (251)
T ss_pred CCCCEEEEcCCCCc-HHHHHH--HHHHHCCCEEEEE-eCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 45678887776544 677754 3333335564444 4444332 2233344444447888888843333332
Q ss_pred -CCCccEEEEeCCc
Q 027826 112 -LVDIDFLVVDSRR 124 (218)
Q Consensus 112 -l~~fDfVFIDa~K 124 (218)
+.++|.||.-+..
T Consensus 80 ~~~~~d~vi~~ag~ 93 (251)
T PRK12826 80 DFGRLDILVANAGI 93 (251)
T ss_pred HhCCCCEEEECCCC
Confidence 2368888777643
No 307
>PRK07109 short chain dehydrogenase; Provisional
Probab=66.33 E-value=23 Score=31.80 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=48.0
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHH-HHHHHHhhCCCceEEEEcCCCchhhcCC-------
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRS-EYVHALGEAGFSPQVITGEADDEELMDG------- 111 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~-~~a~~~~~agl~i~~i~GdA~~~e~L~~------- 111 (218)
+.-+.||=.|.+.| ||.++....+ ..|.+++.+ ..+++.. +..+.+...|..+.++.+|.++.+.+..
T Consensus 6 l~~k~vlITGas~g-IG~~la~~la--~~G~~Vvl~-~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~ 81 (334)
T PRK07109 6 IGRQVVVITGASAG-VGRATARAFA--RRGAKVVLL-ARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEE 81 (334)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHH--HCCCEEEEE-ECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 34578898898888 6888653333 335674443 4544432 3344455666667778888744443332
Q ss_pred -CCCccEEEEeCC
Q 027826 112 -LVDIDFLVVDSR 123 (218)
Q Consensus 112 -l~~fDfVFIDa~ 123 (218)
+.++|.++.-|.
T Consensus 82 ~~g~iD~lInnAg 94 (334)
T PRK07109 82 ELGPIDTWVNNAM 94 (334)
T ss_pred HCCCCCEEEECCC
Confidence 347898887664
No 308
>PRK05968 hypothetical protein; Provisional
Probab=66.22 E-value=95 Score=28.64 Aligned_cols=123 Identities=16% Similarity=0.151 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHH-hcCCCCcEEEEEEcCCccHH-HHHHHHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAV-ASRHTGGRHVCLVPDERSRS-EYVHALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~-a~~~~~G~vitt~e~~~~~~-~~a~~~~~agl~i~~i~G 101 (218)
.-.|.+.+|=..+++..+++..+= +.+|. +++.++. ++-.+|.++++....-.... ...+.....|+++.++..
T Consensus 60 ~~~p~~~~le~~lA~l~g~~~av~--~~sG~--~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (389)
T PRK05968 60 GDNPTVRAFEEMLAKLEGAEDARG--FASGM--AAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDG 135 (389)
T ss_pred CCChhHHHHHHHHHHHhCCCcEEE--ECCHH--HHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCC
Confidence 457888999999999999887654 45555 4443222 22234667555432211111 122334567877666654
Q ss_pred CCCchhhcC-CCCCccEEEEeCCccCcH--HHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMD-GLVDIDFLVVDSRRKDFA--RVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~-~l~~fDfVFIDa~K~~Y~--~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+- .+.+. .+++.++||+..--.-.. .-++.+ .+. +.|..+|+||+...+
T Consensus 136 ~d--~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~ 189 (389)
T PRK05968 136 RD--EEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASP 189 (389)
T ss_pred CC--HHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcch
Confidence 43 44343 345678999975433332 333333 443 447889999987444
No 309
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=66.19 E-value=7.7 Score=31.14 Aligned_cols=88 Identities=18% Similarity=0.213 Sum_probs=42.1
Q ss_pred CcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCC--CCccEEEEeCCccCcH
Q 027826 51 HGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGL--VDIDFLVVDSRRKDFA 128 (218)
Q Consensus 51 ~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l--~~fDfVFIDa~K~~Y~ 128 (218)
|.|=..+++.||.++...|-+ |..++.|+........+.... ....- .+.+..+ ..||+|++|+......
T Consensus 10 G~GKTt~a~~LA~~la~~g~~-vllvD~D~q~~~~~~~~~~~~-----~~~~l--~~~~~~~~~~~yD~VIiD~pp~~~~ 81 (169)
T cd02037 10 GVGKSTVAVNLALALAKLGYK-VGLLDADIYGPSIPKMWRGPM-----KMGAI--KQFLTDVDWGELDYLVIDMPPGTGD 81 (169)
T ss_pred cCChhHHHHHHHHHHHHcCCc-EEEEeCCCCCCCchHHHhCcc-----hHHHH--HHHHHHhhcCCCCEEEEeCCCCCcH
Confidence 345422344577777654445 555666664422222111000 00111 2233333 4899999999977554
Q ss_pred HHHHHhcCCCCCeEEEEe
Q 027826 129 RVLRLANLSSRGAVLVCK 146 (218)
Q Consensus 129 ~~~~~~~L~~~GgvIV~D 146 (218)
..+..+.+....++|++-
T Consensus 82 ~~~~~~~~~~ad~viiV~ 99 (169)
T cd02037 82 EHLTLAQSLPIDGAVIVT 99 (169)
T ss_pred HHHHHHhccCCCeEEEEE
Confidence 444333322224555543
No 310
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=65.80 E-value=43 Score=31.19 Aligned_cols=123 Identities=12% Similarity=0.090 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHH-HHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG-LAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaig-lA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~i~~i~G 101 (218)
.-.|....|-..|++..++..|+=. .+|. .++- +..++..+|.++++....-......... ....|+.+.++..
T Consensus 50 ~~npt~~~Le~~lA~leg~e~ivvt--~gg~--~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~ 125 (388)
T PRK08861 50 SGNPNRGLLEQTLSELESGKGAVVT--NCGT--SALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ 125 (388)
T ss_pred CCCchHHHHHHHHHHHhCCCeEEEE--CCHH--HHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC
Confidence 4678899999999999999999874 3343 3333 2222234456655432211111111111 2244555444422
Q ss_pred CCCchhhcC-CCC-CccEEEEeCC--ccCcHHHHHHh-cC-CCCCeEEEEeCCCCCC
Q 027826 102 EADDEELMD-GLV-DIDFLVVDSR--RKDFARVLRLA-NL-SSRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~-~l~-~fDfVFIDa~--K~~Y~~~~~~~-~L-~~~GgvIV~DNvl~~G 152 (218)
. +.+.+. .+. .-++||+..- .-...--++.+ .+ .+.|.++|+||+...+
T Consensus 126 ~--d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~ 180 (388)
T PRK08861 126 S--DAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTP 180 (388)
T ss_pred C--CHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccc
Confidence 2 134343 343 6789998643 11122112223 22 2348899999997655
No 311
>PRK07582 cystathionine gamma-lyase; Validated
Probab=65.23 E-value=64 Score=29.50 Aligned_cols=119 Identities=15% Similarity=0.076 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHH-HHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGL-AVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaigl-A~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~i~~i~G 101 (218)
.-.|...+|-..+++.. ...++=+++ |. +++-+ ..++..+|.+++++...-......++ .+...|+++.++.-
T Consensus 48 y~~p~~~~Le~~lA~l~-~~~~v~~~s--G~--~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~ 122 (366)
T PRK07582 48 ASNPTWRALEAALGELE-GAEALVFPS--GM--AAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPT 122 (366)
T ss_pred CCCccHHHHHHHHHHHc-CCCEEEECC--HH--HHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECC
Confidence 34678888888888888 555555444 43 34332 22333446676665333222223333 23467776555433
Q ss_pred CCCchhhcCCCCCccEEEEeCCcc--CcHHHHHHh-cCC-CCCeEEEEeCCCC
Q 027826 102 EADDEELMDGLVDIDFLVVDSRRK--DFARVLRLA-NLS-SRGAVLVCKNAYS 150 (218)
Q Consensus 102 dA~~~e~L~~l~~fDfVFIDa~K~--~Y~~~~~~~-~L~-~~GgvIV~DNvl~ 150 (218)
+. ..+ ...+..++||+..-.. ....-++.+ .+. +.|.++|+||+..
T Consensus 123 ~~-~~~--~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~ 172 (366)
T PRK07582 123 AG-MAE--AALAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTA 172 (366)
T ss_pred CC-hHH--HhccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCC
Confidence 22 021 1224678999875421 112223333 333 3488999999863
No 312
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=65.07 E-value=44 Score=23.22 Aligned_cols=105 Identities=17% Similarity=0.114 Sum_probs=55.3
Q ss_pred HHhcCCCe-EEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCc-eEEEEcCCCchh-hcCCC
Q 027826 37 AAGWDARL-IVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFS-PQVITGEADDEE-LMDGL 112 (218)
Q Consensus 37 ~~~~~ak~-ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~-i~~i~GdA~~~e-~L~~l 112 (218)
........ ++++||++|. .+ .++.. ...+.. ++.++..+.+...++... ..+.. +.++.++. .. .++-.
T Consensus 43 ~~~~~~~~~~ld~~~g~g~--~~-~~~~~-~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 115 (257)
T COG0500 43 LRLLPGGLGVLDIGCGTGR--LA-LLARL-GGRGAY-VVGVDLSPEMLALARARAEGAGLGLVDFVVADA--LGGVLPFE 115 (257)
T ss_pred hhhccCCCeeEEecCCcCH--HH-HHHHh-CCCCce-EEEEeCCHHHHHHHHhhhhhcCCCceEEEEecc--ccCCCCCC
Confidence 34444444 9999999997 44 23332 221224 333566665444432221 23333 68888888 55 24433
Q ss_pred C--CccEEEEeCCccCc---HHHHHHh-cCCCCCeEEEEeCCC
Q 027826 113 V--DIDFLVVDSRRKDF---ARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 113 ~--~fDfVFIDa~K~~Y---~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
. .||++ .-..-..+ ...+..+ ..++++|.+++....
T Consensus 116 ~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 116 DSASFDLV-ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred CCCceeEE-eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 3 69998 33332222 4555555 444447766665544
No 313
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=64.97 E-value=28 Score=32.23 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=48.1
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCC--CCccEEE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGL--VDIDFLV 119 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l--~~fDfVF 119 (218)
.++|+=+|+ |.+|.. +++.+...+-. ++.++.+++.... +.+.+..+.++.||++..+.|... +.+|.|+
T Consensus 231 ~~~iiIiG~--G~~g~~--l~~~L~~~~~~-v~vid~~~~~~~~---~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi 302 (453)
T PRK09496 231 VKRVMIVGG--GNIGYY--LAKLLEKEGYS-VKLIERDPERAEE---LAEELPNTLVLHGDGTDQELLEEEGIDEADAFI 302 (453)
T ss_pred CCEEEEECC--CHHHHH--HHHHHHhCCCe-EEEEECCHHHHHH---HHHHCCCCeEEECCCCCHHHHHhcCCccCCEEE
Confidence 577888766 776666 55555443445 6777888764432 222222367899999777788655 4899998
Q ss_pred EeCC
Q 027826 120 VDSR 123 (218)
Q Consensus 120 IDa~ 123 (218)
+=..
T Consensus 303 ~~~~ 306 (453)
T PRK09496 303 ALTN 306 (453)
T ss_pred ECCC
Confidence 8543
No 314
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=64.69 E-value=1e+02 Score=28.10 Aligned_cols=112 Identities=10% Similarity=0.059 Sum_probs=54.8
Q ss_pred cccChhhhHHHHHHhhhccC----------C-CCCHHH--HHHHH---HHHHhcC-----CCeEEEeCcCcchHHHHHHH
Q 027826 3 LVWSPETASKAYIDTVKSCE----------L-SHESGV--AELVS---AMAAGWD-----ARLIVETWSHGGATATSVGL 61 (218)
Q Consensus 3 ~~~~~~~a~~ayl~~l~~~~----------~-~i~p~~--g~fL~---~L~~~~~-----ak~ILEiGt~~GyiGsaigl 61 (218)
+.|+.+.|++++=.+|.... . .++|-- ..++. -|+...+ .-++|+||||+..|=.- |
T Consensus 43 idF~~~~Av~~Ln~aLLk~dfgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpL--L 120 (299)
T PF05971_consen 43 IDFSDPEAVRELNKALLKHDFGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPL--L 120 (299)
T ss_dssp S-TTSHHHHHHHHHHHHHHHH--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHH--H
T ss_pred EecCCHHHHHHHHHHHHHHhcCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHH--H
Confidence 56888888887777766531 1 233322 33333 3344333 24799999977653122 2
Q ss_pred HHhcCCCCcEEEEEEcCCccHHHHHHHH-hhC-CCc--eEEEEcCCCchhhcCCC----CCccEEEE
Q 027826 62 AVASRHTGGRHVCLVPDERSRSEYVHAL-GEA-GFS--PQVITGEADDEELMDGL----VDIDFLVV 120 (218)
Q Consensus 62 A~a~~~~~G~vitt~e~~~~~~~~a~~~-~~a-gl~--i~~i~GdA~~~e~L~~l----~~fDfVFI 120 (218)
+.... +=+.|.| |.++...+.|+.+ .+- +++ |+++.-+. ...+++.+ +.|||..-
T Consensus 121 g~~~~--~W~fvaT-dID~~sl~~A~~nv~~N~~L~~~I~l~~~~~-~~~i~~~i~~~~e~~dftmC 183 (299)
T PF05971_consen 121 GAKLY--GWSFVAT-DIDPKSLESARENVERNPNLESRIELRKQKN-PDNIFDGIIQPNERFDFTMC 183 (299)
T ss_dssp HHHHH----EEEEE-ES-HHHHHHHHHHHHHT-T-TTTEEEEE--S-T-SSTTTSTT--S-EEEEEE
T ss_pred hhhhc--CCeEEEe-cCCHHHHHHHHHHHHhccccccceEEEEcCC-ccccchhhhcccceeeEEec
Confidence 22222 3466766 5667666666655 444 787 88876533 03344444 26888764
No 315
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=64.62 E-value=30 Score=30.82 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=46.6
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCC-----chhhcCCCCCccE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEAD-----DEELMDGLVDIDF 117 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~-----~~e~L~~l~~fDf 117 (218)
.+|+=||+ |-+|++++.+.+. .+-. |+.+..++ .. .+.+.|+.+.-..|+.. .....+.+.++|+
T Consensus 6 m~I~IiG~--GaiG~~lA~~L~~--~g~~-V~~~~r~~-~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 75 (313)
T PRK06249 6 PRIGIIGT--GAIGGFYGAMLAR--AGFD-VHFLLRSD-YE----AVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDW 75 (313)
T ss_pred cEEEEECC--CHHHHHHHHHHHH--CCCe-EEEEEeCC-HH----HHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCE
Confidence 46777765 5688887633332 1223 55444544 21 23344544222222110 0111122358999
Q ss_pred EEEeCCccCcHHHHHHh-cCCCCCeEEE
Q 027826 118 LVVDSRRKDFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 118 VFIDa~K~~Y~~~~~~~-~L~~~GgvIV 144 (218)
||+=..-.+-.+.++.+ .+..++++|+
T Consensus 76 vilavK~~~~~~~~~~l~~~~~~~~~iv 103 (313)
T PRK06249 76 VLVGLKTTANALLAPLIPQVAAPDAKVL 103 (313)
T ss_pred EEEEecCCChHhHHHHHhhhcCCCCEEE
Confidence 99976545556677776 4444466554
No 316
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=64.19 E-value=55 Score=30.56 Aligned_cols=125 Identities=12% Similarity=0.130 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEE
Q 027826 22 ELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVI 99 (218)
Q Consensus 22 ~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i 99 (218)
.+...|...+|-..|++..++...+= +.+|. .++-.+ .++..++.++++....-... ..........|+.+.++
T Consensus 52 sr~~~p~~~~le~~lA~l~g~~~~v~--~~sG~--~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v 127 (418)
T TIGR01326 52 SRLMNPTTDVLEQRIAALEGGVAALA--VASGQ--AAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFV 127 (418)
T ss_pred ECCCChhHHHHHHHHHHHhCCCeEEE--EccHH--HHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEE
Confidence 34577889999999999999877765 55555 444322 22233466755542211111 11223345678775544
Q ss_pred EcCCCchhhcCC-CC-CccEEEEeCC--ccCcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 100 TGEADDEELMDG-LV-DIDFLVVDSR--RKDFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 100 ~GdA~~~e~L~~-l~-~fDfVFIDa~--K~~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
.-+ +.+.+.. +. ..++|++..- +.....-++.+ .+. +.|.++|+||+...+
T Consensus 128 ~~~--d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~ 184 (418)
T TIGR01326 128 DPD--DPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATP 184 (418)
T ss_pred CCC--CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchh
Confidence 322 2444443 43 6789999742 21111223333 333 348899999997544
No 317
>PRK09028 cystathionine beta-lyase; Provisional
Probab=64.06 E-value=86 Score=29.35 Aligned_cols=123 Identities=9% Similarity=0.047 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHH-HHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG-LAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaig-lA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~i~~i~G 101 (218)
.-.|..-+|=..++++.+...++= +.+|. .+|- +..++..+|.++|++...-........ .+.+.|+++.++.-
T Consensus 58 ~~npt~~~Le~~iA~le~~~~~~~--~~sG~--~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~ 133 (394)
T PRK09028 58 RGTPTHFAFQAAIVELEGGAGTAL--YPSGA--AAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDP 133 (394)
T ss_pred CCCchHHHHHHHHHHHhCCCcEEE--ECCHH--HHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECC
Confidence 446666677777888778777764 33444 3433 222333447786665333222222222 23467776555433
Q ss_pred CCCchhhcCC-CC-CccEEEEeCCc--cCcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMDG-LV-DIDFLVVDSRR--KDFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~~-l~-~fDfVFIDa~K--~~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+. .+.+.+ +. .-.+|++-.-- .....-++.+ .+. ..|.++|+||+...+
T Consensus 134 ~~--~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p 188 (394)
T PRK09028 134 MI--GEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASP 188 (394)
T ss_pred CC--HHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence 33 444443 33 57899998642 2223334444 443 448999999998654
No 318
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=63.95 E-value=59 Score=30.02 Aligned_cols=123 Identities=13% Similarity=0.129 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~G 101 (218)
...|...+|=..|++..++..++= |.+|. .++-++ .++..+|.++|+.-..-..... ..+.+...|+++.++.-
T Consensus 58 ~~~p~~~~le~~la~l~g~~~~v~--~ssG~--~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 133 (390)
T PRK08133 58 FTNPTVTMFQERLAALEGAEACVA--TASGM--AAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDL 133 (390)
T ss_pred CCChHHHHHHHHHHHHhCCCcEEE--ECCHH--HHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECC
Confidence 457888899999999999998754 66776 555422 2233335675554222221222 22334567877555533
Q ss_pred CCCchhhcCC-CC-CccEEEEeCC--ccCcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMDG-LV-DIDFLVVDSR--RKDFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~~-l~-~fDfVFIDa~--K~~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+- .+.+.. +. .-.+|++..- .-....-++.+ .+. +.|..||+||+...+
T Consensus 134 ~d--~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~ 188 (390)
T PRK08133 134 TD--LDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTP 188 (390)
T ss_pred CC--HHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 32 343433 43 5689998643 11121122333 332 448899999996443
No 319
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=63.67 E-value=27 Score=32.32 Aligned_cols=80 Identities=11% Similarity=0.195 Sum_probs=47.2
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEE-EEEcCCcc-----H----HHHH-HHH-hhCCCceEEEEcCCCch
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHV-CLVPDERS-----R----SEYV-HAL-GEAGFSPQVITGEADDE 106 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vi-tt~e~~~~-----~----~~~a-~~~-~~agl~i~~i~GdA~~~ 106 (218)
.++||+||=||+++|| |-+.-++.|... +...+ ...|.... . ..++ +.+ +++|+-..-+.||| .
T Consensus 38 ~ngPKkVLviGaSsGy-GLa~RIsaaFG~-gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~kGlyAksingDa--F 113 (398)
T COG3007 38 KNGPKKVLVIGASSGY-GLAARISAAFGP-GADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQKGLYAKSINGDA--F 113 (398)
T ss_pred cCCCceEEEEecCCcc-cHHHHHHHHhCC-CCceeeEEeecCCccCCCcchhhhHHHHHHHHHHhcCceeeecccch--h
Confidence 3589999999999999 444446666542 33322 23333221 1 1111 333 37887767788999 4
Q ss_pred h---------hcCC-CCCccEEEEeC
Q 027826 107 E---------LMDG-LVDIDFLVVDS 122 (218)
Q Consensus 107 e---------~L~~-l~~fDfVFIDa 122 (218)
. .+++ +...|+|.---
T Consensus 114 S~e~k~kvIe~Ik~~~g~vDlvvYSl 139 (398)
T COG3007 114 SDEMKQKVIEAIKQDFGKVDLVVYSL 139 (398)
T ss_pred hHHHHHHHHHHHHHhhccccEEEEec
Confidence 2 2222 45899987653
No 320
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=63.65 E-value=39 Score=31.30 Aligned_cols=123 Identities=17% Similarity=0.174 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSEYVHALG-EAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~i~~i~G 101 (218)
.-.|...+|-..|++..++..++= |.+|. .+|.++ .++..++.++++....-+........+. ..|+.+.++..
T Consensus 49 ~~~pt~~~L~~~lA~l~g~~~~i~--~~sg~--~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~ 124 (386)
T PRK08045 49 RGNPTRDVVQRALAELEGGAGAVL--TNTGM--SAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ 124 (386)
T ss_pred CCCccHHHHHHHHHHHhCCCeEEE--ECCHH--HHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCC
Confidence 456888999999999998877765 34444 344322 2333446675544222221222223332 34444444422
Q ss_pred CCCchhhcC-CCC-CccEEEEeCCccCcHHH--HHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMD-GLV-DIDFLVVDSRRKDFARV--LRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~-~l~-~fDfVFIDa~K~~Y~~~--~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
. +.+.+. .+. .-++||+..--.-.... ++.+ .+. +.|.++|+||+...+
T Consensus 125 ~--d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~ 179 (386)
T PRK08045 125 G--DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSP 179 (386)
T ss_pred C--CHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 1 133333 343 67899997432111111 2222 332 348899999997554
No 321
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=63.62 E-value=40 Score=31.87 Aligned_cols=86 Identities=14% Similarity=0.181 Sum_probs=49.8
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCC-CCCccEEEEe
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDG-LVDIDFLVVD 121 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~-l~~fDfVFID 121 (218)
++||=||+ |-+|++++.-.|... ++. |++-...++....+. ...+-.++.+.=||.+.+.|.. +..+|+|+.=
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~-d~~-V~iAdRs~~~~~~i~--~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNG-DGE-VTIADRSKEKCARIA--ELIGGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCC-Cce-EEEEeCCHHHHHHHH--hhccccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 57899999 557999874444332 477 666667654332222 2222246666666644444443 3567877766
Q ss_pred CCccCcHHHHHHh
Q 027826 122 SRRKDFARVLRLA 134 (218)
Q Consensus 122 a~K~~Y~~~~~~~ 134 (218)
+...++....+.|
T Consensus 76 ~p~~~~~~i~ka~ 88 (389)
T COG1748 76 APPFVDLTILKAC 88 (389)
T ss_pred CCchhhHHHHHHH
Confidence 6655666665554
No 322
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=63.49 E-value=33 Score=31.82 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHH--HHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCceEEEE
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG--LAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQVIT 100 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaig--lA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~i~~i~ 100 (218)
.-.|...+|-+.|++..++...+= +.+|. +++. +...+ .+|.++++....-.......+. ....|+++.++.
T Consensus 62 ~~~p~~~~Le~~lA~l~G~~~~~~--~~sG~--~Ai~~~l~~~l-~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd 136 (398)
T PRK07504 62 YSNPTVDMFEKRMCALEGAEDARA--TASGM--AAVTAAILCQV-KAGDHVVAARALFGSCRYVVETLLPRYGIESTLVD 136 (398)
T ss_pred CCCchHHHHHHHHHHHhCCCeeeE--ecCHH--HHHHHHHHHHh-CCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEEC
Confidence 347889999999999999887763 55666 5553 22223 3466755543211111111122 235676655553
Q ss_pred cCCCchhhcC-CCC-CccEEEEeCCccC--cHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 101 GEADDEELMD-GLV-DIDFLVVDSRRKD--FARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 101 GdA~~~e~L~-~l~-~fDfVFIDa~K~~--Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+.- .+.+. .+. .-++|++..--.- ..--++.+ .+. +.|.++|+||+...+
T Consensus 137 ~~d--~e~l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~ 192 (398)
T PRK07504 137 GLD--LDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATP 192 (398)
T ss_pred CCC--HHHHHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCcccc
Confidence 322 34343 343 6789998764221 11112333 332 348899999997544
No 323
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.44 E-value=46 Score=33.01 Aligned_cols=95 Identities=17% Similarity=0.195 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhc---------CCCeEEEeC-cCcchHHHHHH--HHHhcC-CCCcEEEEEEcCCccHHHHHHHHh----h
Q 027826 29 VAELVSAMAAGW---------DARLIVETW-SHGGATATSVG--LAVASR-HTGGRHVCLVPDERSRSEYVHALG----E 91 (218)
Q Consensus 29 ~g~fL~~L~~~~---------~ak~ILEiG-t~~GyiGsaig--lA~a~~-~~~G~vitt~e~~~~~~~~a~~~~----~ 91 (218)
...++..|.+.. +.+.|.=+| ||+|= |++. ||..+. ..+++-|..+..+..+......+. .
T Consensus 328 ~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGK--TTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~i 405 (559)
T PRK12727 328 RGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGK--TTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQ 405 (559)
T ss_pred HHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCH--HHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcc
Confidence 445566665533 335666667 78887 6654 554332 222322444444554433333343 2
Q ss_pred CCCceEEEEcCCCchhhcCCCCCccEEEEeCCcc
Q 027826 92 AGFSPQVITGEADDEELMDGLVDIDFLVVDSRRK 125 (218)
Q Consensus 92 agl~i~~i~GdA~~~e~L~~l~~fDfVFIDa~K~ 125 (218)
.|+.+.......++.+.|..+..+|+||||..-.
T Consensus 406 Lgv~v~~a~d~~~L~~aL~~l~~~DLVLIDTaG~ 439 (559)
T PRK12727 406 LGIAVHEADSAESLLDLLERLRDYKLVLIDTAGM 439 (559)
T ss_pred cCceeEecCcHHHHHHHHHHhccCCEEEecCCCc
Confidence 3333222221112255666677899999998843
No 324
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=63.04 E-value=56 Score=30.86 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=49.9
Q ss_pred EEEEcCCccHHHHHHHHh-hCCCc--eEEEEcCCCchhhcCCCCCccEEEEeC-----------CccCcHHHHHHh-cCC
Q 027826 73 VCLVPDERSRSEYVHALG-EAGFS--PQVITGEADDEELMDGLVDIDFLVVDS-----------RRKDFARVLRLA-NLS 137 (218)
Q Consensus 73 itt~e~~~~~~~~a~~~~-~agl~--i~~i~GdA~~~e~L~~l~~fDfVFIDa-----------~K~~Y~~~~~~~-~L~ 137 (218)
+...+.++.+.+.|+.|. +||+. |+|..+|+ ..+=+.+.++|+|..+- -...|..+.+.+ ++.
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~--~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADA--TDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcch--hhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHh
Confidence 445588898888888775 89999 99999999 55444446777777662 123677777777 555
Q ss_pred CC--CeEEEEeCC
Q 027826 138 SR--GAVLVCKNA 148 (218)
Q Consensus 138 ~~--GgvIV~DNv 148 (218)
+. -.|+..+--
T Consensus 335 ~~ws~~v~tt~e~ 347 (381)
T COG0116 335 AGWSRYVFTTSED 347 (381)
T ss_pred cCCceEEEEccHH
Confidence 52 145544443
No 325
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=62.82 E-value=94 Score=29.50 Aligned_cols=123 Identities=12% Similarity=0.067 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~G 101 (218)
...|.+.+|=..+++..+++..+=+.+++ +++-++ .++..+|.++|++-..-..... ..+.+.+.|+++.++.
T Consensus 66 ~~~pt~~~le~~la~l~g~~~~v~fsSG~----~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd- 140 (437)
T PRK05613 66 LTNPTVEALENRIASLEGGVHAVAFASGQ----AAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE- 140 (437)
T ss_pred ccChHHHHHHHHHHHHhCCCeEEEeCCHH----HHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-
Confidence 56788999989999999998777755543 333222 2223446776654211111111 1233457888776664
Q ss_pred CCCchhhc-CCCC-CccEEEEeCCccCc---HHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELM-DGLV-DIDFLVVDSRRKDF---ARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L-~~l~-~fDfVFIDa~K~~Y---~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+.++.+.+ ..+. ...+|++... .+. ..-++.+ .+. +.|.++++||+...|
T Consensus 141 ~~~d~e~l~~~l~~~tk~V~~e~~-~Np~~~v~di~~I~~la~~~gi~livD~t~a~g 197 (437)
T PRK05613 141 NPDDPESWQAAVQPNTKAFFGETF-ANPQADVLDIPAVAEVAHRNQVPLIVDNTIATA 197 (437)
T ss_pred CCCCHHHHHHhCCccCeEEEEECC-CCCCCcccCHHHHHHHHHHcCCeEEEECCCccc
Confidence 32123333 3454 5778888654 222 1222333 333 448899999998666
No 326
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=62.59 E-value=63 Score=28.71 Aligned_cols=92 Identities=10% Similarity=0.108 Sum_probs=45.8
Q ss_pred CCeEEEeCcCcchHHHHH-HHHHhcCCCCc-EEEEEEcCCccHHHHHHHHhhCCCc--eEEEEcCCCchhhcCCCCCccE
Q 027826 42 ARLIVETWSHGGATATSV-GLAVASRHTGG-RHVCLVPDERSRSEYVHALGEAGFS--PQVITGEADDEELMDGLVDIDF 117 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsai-glA~a~~~~~G-~vitt~e~~~~~~~~a~~~~~agl~--i~~i~GdA~~~e~L~~l~~fDf 117 (218)
-++||=+|+ |-+|.+. -+|+++ +. +++. .+.++++.+.++ +.|.. +.....+. .+.+.....+|+
T Consensus 170 g~~VlV~G~--G~vG~~aiqlak~~---G~~~Vi~-~~~~~~~~~~a~---~lGa~~vi~~~~~~~--~~~~~~~g~~D~ 238 (343)
T PRK09880 170 GKRVFVSGV--GPIGCLIVAAVKTL---GAAEIVC-ADVSPRSLSLAR---EMGADKLVNPQNDDL--DHYKAEKGYFDV 238 (343)
T ss_pred CCEEEEECC--CHHHHHHHHHHHHc---CCcEEEE-EeCCHHHHHHHH---HcCCcEEecCCcccH--HHHhccCCCCCE
Confidence 467887775 4345443 366654 34 4444 455555554443 44543 21111122 333322235998
Q ss_pred EEEeCCccCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 118 LVVDSRRKDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 118 VFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
|| |+--. +..++.+ +++++||.++.=-
T Consensus 239 vi-d~~G~--~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 239 SF-EVSGH--PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EE-ECCCC--HHHHHHHHHHhhcCCEEEEEc
Confidence 76 76532 3345554 5555588777543
No 327
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=62.33 E-value=28 Score=30.11 Aligned_cols=44 Identities=18% Similarity=-0.004 Sum_probs=27.8
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCC------CcEEEEEEcCCccHHHHHHH
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHT------GGRHVCLVPDERSRSEYVHA 88 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~------~G~vitt~e~~~~~~~~a~~ 88 (218)
+-+|+|+|.|.|. -+--+...+... .-+ ++++|.++.+.+..+.
T Consensus 19 ~~~ivE~GaG~G~--La~diL~~l~~~~p~~~~~~~-y~ivE~Sp~L~~~Q~~ 68 (252)
T PF02636_consen 19 PLRIVEIGAGRGT--LARDILRYLRKFSPEVYKRLR-YHIVEISPYLRERQKE 68 (252)
T ss_dssp -EEEEEES-TTSH--HHHHHHHHHCCTTHHHHTTCE-EEEE-TTCCCHHHHHH
T ss_pred CcEEEEECCCchH--HHHHHHHHHHHhChhhhhcce-EEEEcCCHHHHHHHHH
Confidence 3589999999999 444455555432 125 7788999887665543
No 328
>PRK06234 methionine gamma-lyase; Provisional
Probab=62.32 E-value=1.1e+02 Score=28.45 Aligned_cols=124 Identities=12% Similarity=0.154 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHH-hcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAV-ASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~-a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~G 101 (218)
.-.|...+|-..+++..+...++= +++|. .++-++. ++..+|.++++....-..... ....+...|..+.++..
T Consensus 61 ~~~p~~~~Le~~iA~~~g~~~~l~--~~sG~--~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~ 136 (400)
T PRK06234 61 LGNPTSTEVENKLALLEGGEAAVV--AASGM--GAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDT 136 (400)
T ss_pred CCCccHHHHHHHHHHHhCCCcEEE--EcCHH--HHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECC
Confidence 346888899999999999887765 44555 4443221 223345675554322111111 22233567766444432
Q ss_pred CCCchhhcCCCC-CccEEEEeCCc------cCcHHHHHHhcCCCCCeEEEEeCCCCCC
Q 027826 102 EADDEELMDGLV-DIDFLVVDSRR------KDFARVLRLANLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~~l~-~fDfVFIDa~K------~~Y~~~~~~~~L~~~GgvIV~DNvl~~G 152 (218)
+- +.++...+. .-++||+..-- ....++.++++-.++|.++|+||+...+
T Consensus 137 ~d-~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~ 193 (400)
T PRK06234 137 SN-LEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTP 193 (400)
T ss_pred CC-HHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCch
Confidence 21 133333343 56899987431 1222333333222238899999997544
No 329
>PRK05650 short chain dehydrogenase; Provisional
Probab=62.00 E-value=34 Score=29.07 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=41.7
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcCC--------CC
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMDG--------LV 113 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~~--------l~ 113 (218)
++||=.|+..| ||..+. ..+...|-+++.+ ..+++. ......+...+-.+.++..|..+.+.+.. +.
T Consensus 1 ~~vlVtGasgg-IG~~la--~~l~~~g~~V~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 1 NRVMITGAASG-LGRAIA--LRWAREGWRLALA-DVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred CEEEEecCCCh-HHHHHH--HHHHHCCCEEEEE-eCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 35776777666 688765 3333335575444 344433 22233344445457777788733333322 23
Q ss_pred CccEEEEeCC
Q 027826 114 DIDFLVVDSR 123 (218)
Q Consensus 114 ~fDfVFIDa~ 123 (218)
++|.++.-|.
T Consensus 77 ~id~lI~~ag 86 (270)
T PRK05650 77 GIDVIVNNAG 86 (270)
T ss_pred CCCEEEECCC
Confidence 6898887654
No 330
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=61.98 E-value=38 Score=28.44 Aligned_cols=80 Identities=23% Similarity=0.253 Sum_probs=45.8
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcC--------C
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMD--------G 111 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~--------~ 111 (218)
+..|.+|=.|.+.| ||.++....+ +.|.+++. ...++......+.+...+..+.++..|.+..+.+. .
T Consensus 6 ~~~k~vlVtGas~g-IG~~la~~l~--~~G~~v~~-~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 6 FAGKVVVVTGAAQG-IGRGVALRAA--AEGARVVL-VDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred cCCCEEEEeCCCch-HHHHHHHHHH--HCCCEEEE-EeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 34578888888777 7888653333 33567544 34444333333444445555667777773322222 1
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
+..+|.++.-|.
T Consensus 82 ~~~id~lv~nAg 93 (260)
T PRK12823 82 FGRIDVLINNVG 93 (260)
T ss_pred cCCCeEEEECCc
Confidence 347899888774
No 331
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=61.92 E-value=25 Score=30.80 Aligned_cols=78 Identities=13% Similarity=0.075 Sum_probs=40.4
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHH-HHHHHHhhCCC--ceEEEEcCCCchhhcCC-CCCccE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRS-EYVHALGEAGF--SPQVITGEADDEELMDG-LVDIDF 117 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~-~~a~~~~~agl--~i~~i~GdA~~~e~L~~-l~~fDf 117 (218)
-|+||=.|. +|+||+.+. ..+...|-+++.+. .++... .........+. .++++.+|..+.+.+.+ ++.+|.
T Consensus 5 ~k~vlVtG~-~G~IG~~l~--~~L~~~G~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~ 80 (325)
T PLN02989 5 GKVVCVTGA-SGYIASWIV--KLLLFRGYTINATV-RDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCET 80 (325)
T ss_pred CCEEEEECC-chHHHHHHH--HHHHHCCCEEEEEE-cCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCE
Confidence 367777664 577888864 33333345644333 333222 22111222232 27888899833333433 346788
Q ss_pred EEEeCC
Q 027826 118 LVVDSR 123 (218)
Q Consensus 118 VFIDa~ 123 (218)
||.=|.
T Consensus 81 vih~A~ 86 (325)
T PLN02989 81 VFHTAS 86 (325)
T ss_pred EEEeCC
Confidence 776654
No 332
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=61.89 E-value=81 Score=29.90 Aligned_cols=124 Identities=10% Similarity=0.014 Sum_probs=68.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHH--HHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCceEEE
Q 027826 23 LSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG--LAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFSPQVI 99 (218)
Q Consensus 23 ~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaig--lA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~i~~i 99 (218)
+...|...+|=..|++..+++..+= +++|+ +++- +.. +..+|.++|++...-....... ..+.+.|+.+.++
T Consensus 65 r~~~p~~~~Le~~lA~l~g~~~av~--~sSG~--aAi~~al~a-ll~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~v 139 (436)
T PRK07812 65 RIMNPTQDVVEQRIAALEGGVAALL--LASGQ--AAETFAILN-LAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFV 139 (436)
T ss_pred CCCCchHHHHHHHHHHHhCCCeEEE--EccHH--HHHHHHHHH-HhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEE
Confidence 3567888999999999999988755 55566 4443 322 2334677565421111111111 2234567665555
Q ss_pred EcCCCch-hhcCCCC-CccEEEEeCCcc--CcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 100 TGEADDE-ELMDGLV-DIDFLVVDSRRK--DFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 100 ~GdA~~~-e~L~~l~-~fDfVFIDa~K~--~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
. +.++. ++.+.+. .-.+|++..--. ....-++.+ ++. +.|.++|+||+...+
T Consensus 140 d-d~~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~ 197 (436)
T PRK07812 140 E-DPDDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATP 197 (436)
T ss_pred C-CCCCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 3 22123 3344454 567999886542 222222333 332 447899999987544
No 333
>PRK05866 short chain dehydrogenase; Provisional
Probab=61.75 E-value=29 Score=30.43 Aligned_cols=77 Identities=14% Similarity=0.225 Sum_probs=44.8
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcCC--------C
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMDG--------L 112 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~~--------l 112 (218)
-++||=.|.+.| ||.+++ ..+...|-+++.+ ..+++. .+..+.+...+..+.++.+|.++.+.+.+ +
T Consensus 40 ~k~vlItGasgg-IG~~la--~~La~~G~~Vi~~-~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 40 GKRILLTGASSG-IGEAAA--EQFARRGATVVAV-ARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred CCEEEEeCCCcH-HHHHHH--HHHHHCCCEEEEE-ECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 378998888777 688765 3332335564444 454443 23334444455557778888743333322 3
Q ss_pred CCccEEEEeC
Q 027826 113 VDIDFLVVDS 122 (218)
Q Consensus 113 ~~fDfVFIDa 122 (218)
+.+|.++.=|
T Consensus 116 g~id~li~~A 125 (293)
T PRK05866 116 GGVDILINNA 125 (293)
T ss_pred CCCCEEEECC
Confidence 4789988765
No 334
>PRK08339 short chain dehydrogenase; Provisional
Probab=61.41 E-value=31 Score=29.52 Aligned_cols=79 Identities=13% Similarity=0.179 Sum_probs=45.3
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhh-CCCceEEEEcCCCchhhcCC-------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGE-AGFSPQVITGEADDEELMDG------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~-agl~i~~i~GdA~~~e~L~~------- 111 (218)
.-|.+|=.|.+.| ||.+++-. +.+.|.+++.+ ..+++. ...++.+.+ .+..+.++.+|.++.+.+..
T Consensus 7 ~~k~~lItGas~g-IG~aia~~--l~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (263)
T PRK08339 7 SGKLAFTTASSKG-IGFGVARV--LARAGADVILL-SRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKN 82 (263)
T ss_pred CCCEEEEeCCCCc-HHHHHHHH--HHHCCCEEEEE-eCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHh
Confidence 4578888888888 68886533 33336675544 455443 233344432 34457778888743333322
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
+..+|+++.-|.
T Consensus 83 ~g~iD~lv~nag 94 (263)
T PRK08339 83 IGEPDIFFFSTG 94 (263)
T ss_pred hCCCcEEEECCC
Confidence 236888877664
No 335
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=61.35 E-value=31 Score=28.94 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=44.8
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
.-|+||=.|...| +|.++. ..+.+.|.+++. ...+++... ..+.+...|.++.++..|....+.+..
T Consensus 9 ~~k~vlItGa~g~-iG~~ia--~~l~~~G~~V~~-~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 9 TGRRALVTGSSQG-IGYALA--EGLAQAGAEVIL-NGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCEEEEECCcch-HHHHHH--HHHHHcCCEEEE-EeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 3478888887655 688754 333333567544 445544322 233444556557777788733333322
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
+.++|.++.=+.
T Consensus 85 ~~~~d~li~~ag 96 (255)
T PRK07523 85 IGPIDILVNNAG 96 (255)
T ss_pred cCCCCEEEECCC
Confidence 236898887664
No 336
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=61.21 E-value=35 Score=28.58 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=44.2
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
..++||=.|.+.| ||.++.-. +.+.|.+++.+ ..+++. ....+.+.+.|-.+.++.+|.+..+.+.+
T Consensus 10 ~~k~ilItGas~~-IG~~la~~--l~~~G~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 10 AGQVALVTGSARG-LGFEIARA--LAGAGAHVLVN-GRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCEEEEECCCch-HHHHHHHH--HHHcCCeEEEE-eCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 5678888887666 68886533 32335675444 454433 23334444555457788888743333322
Q ss_pred CCCccEEEEeC
Q 027826 112 LVDIDFLVVDS 122 (218)
Q Consensus 112 l~~fDfVFIDa 122 (218)
+.++|.++.=+
T Consensus 86 ~~~id~vi~~a 96 (256)
T PRK06124 86 HGRLDILVNNV 96 (256)
T ss_pred cCCCCEEEECC
Confidence 23678887543
No 337
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=61.19 E-value=43 Score=29.09 Aligned_cols=91 Identities=22% Similarity=0.248 Sum_probs=46.6
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCC----chhhcCCCCCccEEE
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEAD----DEELMDGLVDIDFLV 119 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~----~~e~L~~l~~fDfVF 119 (218)
+|.=||+ |.+|++++...+ ..+-. |+.+..+++.. +.+.+.|+.++ .|+.. ....+..++++|+||
T Consensus 2 ~I~IiG~--G~~G~~~a~~L~--~~g~~-V~~~~r~~~~~---~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~d~vi 71 (304)
T PRK06522 2 KIAILGA--GAIGGLFGAALA--QAGHD-VTLVARRGAHL---DALNENGLRLE--DGEITVPVLAADDPAELGPQDLVI 71 (304)
T ss_pred EEEEECC--CHHHHHHHHHHH--hCCCe-EEEEECChHHH---HHHHHcCCccc--CCceeecccCCCChhHcCCCCEEE
Confidence 3555665 667888663333 22334 55555544332 22333354331 22210 011112235899999
Q ss_pred EeCCccCcHHHHHHh-cCCCCCeEEE
Q 027826 120 VDSRRKDFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 120 IDa~K~~Y~~~~~~~-~L~~~GgvIV 144 (218)
+=....+-...++.+ ....++.+||
T Consensus 72 la~k~~~~~~~~~~l~~~l~~~~~iv 97 (304)
T PRK06522 72 LAVKAYQLPAALPSLAPLLGPDTPVL 97 (304)
T ss_pred EecccccHHHHHHHHhhhcCCCCEEE
Confidence 987766677778777 4444455544
No 338
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=60.92 E-value=9.5 Score=33.78 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHH-HHHHhhCCCceEEEEcCC
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY-VHALGEAGFSPQVITGEA 103 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~-a~~~~~agl~i~~i~GdA 103 (218)
..+....++..+-+.+.... + ..+ -||-.-.+..+++ .-+++.+ |..+.-.+. ++++.. .-.++++.+|+
T Consensus 42 ~p~~l~~yl~~v~~~n~~~~-l--~~Y---PGSP~ia~~llR~-qDrl~l~-ELHp~d~~~L~~~~~~-~~~v~v~~~DG 112 (245)
T PF04378_consen 42 LPPALQPYLDAVRALNPDGE-L--RFY---PGSPAIAARLLRE-QDRLVLF-ELHPQDFEALKKNFRR-DRRVRVHHRDG 112 (245)
T ss_dssp S-GGGHHHHHHHHHHSSSSS-----EE---E-HHHHHHHHS-T-TSEEEEE---SHHHHHHHTTS--T-TS-EEEE-S-H
T ss_pred chHHHHHHHHHHHHhccCCC-c--CcC---CCCHHHHHHhCCc-cceEEEE-ecCchHHHHHHHHhcc-CCccEEEeCch
Confidence 34555666766665554333 2 233 4566444444555 4575554 666633222 222222 11399999999
Q ss_pred CchhhcCCC-CCcc---EEEEeC---CccCcHHHHHHh
Q 027826 104 DDEELMDGL-VDID---FLVVDS---RRKDFARVLRLA 134 (218)
Q Consensus 104 ~~~e~L~~l-~~fD---fVFIDa---~K~~Y~~~~~~~ 134 (218)
.+.|..+ ++-. |||||- .|.+|.+..+.+
T Consensus 113 --~~~l~allPP~~rRglVLIDPpYE~~~dy~~v~~~l 148 (245)
T PF04378_consen 113 --YEGLKALLPPPERRGLVLIDPPYEQKDDYQRVVDAL 148 (245)
T ss_dssp --HHHHHHH-S-TTS-EEEEE-----STTHHHHHHHHH
T ss_pred --hhhhhhhCCCCCCCeEEEECCCCCCchHHHHHHHHH
Confidence 9877653 4444 999997 688999988887
No 339
>PRK05867 short chain dehydrogenase; Provisional
Probab=60.92 E-value=33 Score=28.81 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=44.6
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
+-|.+|=.|.+.| ||.++... +.+.|.+++.+ ..+++. ...++.+...+-.+.++..|.++.+.+.+
T Consensus 8 ~~k~vlVtGas~g-IG~~ia~~--l~~~G~~V~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 8 HGKRALITGASTG-IGKRVALA--YVEAGAQVAIA-ARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHH--HHHCCCEEEEE-cCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4578999898877 68886533 33335675544 444433 22333444445446677777733333322
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
+.++|.++.-|.
T Consensus 84 ~g~id~lv~~ag 95 (253)
T PRK05867 84 LGGIDIAVCNAG 95 (253)
T ss_pred hCCCCEEEECCC
Confidence 247888887553
No 340
>PRK07904 short chain dehydrogenase; Provisional
Probab=60.59 E-value=27 Score=29.79 Aligned_cols=80 Identities=20% Similarity=0.118 Sum_probs=45.4
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCC-cEEEEEEcCCcc--HHHHHHHHhhCCC-ceEEEEcCCCchhh----cC
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTG-GRHVCLVPDERS--RSEYVHALGEAGF-SPQVITGEADDEEL----MD 110 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~-G~vitt~e~~~~--~~~~a~~~~~agl-~i~~i~GdA~~~e~----L~ 110 (218)
.-++++||=.|.+.| ||.++. +.+...+ .+++.+ ..+++ ..+..+.+...+- .++++..|..+.+. ++
T Consensus 5 ~~~~~~vlItGas~g-iG~~la--~~l~~~gg~~V~~~-~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~ 80 (253)
T PRK07904 5 VGNPQTILLLGGTSE-IGLAIC--ERYLKNAPARVVLA-ALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVID 80 (253)
T ss_pred cCCCcEEEEEcCCcH-HHHHHH--HHHHhcCCCeEEEE-eCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHH
Confidence 457889999999888 677754 4433334 365554 34443 3334455554443 37777777622221 22
Q ss_pred C---CCCccEEEEeC
Q 027826 111 G---LVDIDFLVVDS 122 (218)
Q Consensus 111 ~---l~~fDfVFIDa 122 (218)
. ...+|.++.-+
T Consensus 81 ~~~~~g~id~li~~a 95 (253)
T PRK07904 81 AAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHhcCCCCEEEEee
Confidence 1 23789887644
No 341
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=60.56 E-value=47 Score=28.74 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=18.4
Q ss_pred CccEEEEeCCccC-cHHHHHHhcCCCCCeEEE
Q 027826 114 DIDFLVVDSRRKD-FARVLRLANLSSRGAVLV 144 (218)
Q Consensus 114 ~fDfVFIDa~K~~-Y~~~~~~~~L~~~GgvIV 144 (218)
.||+||||+.... +.+..-.+.... +-++|
T Consensus 212 ~yD~ViiD~pp~~~~~d~~~~~~~~d-~vilV 242 (274)
T TIGR03029 212 DYDVVIVDTPSAEHSSDAQIVATRAR-GTLIV 242 (274)
T ss_pred cCCEEEEeCCCcccccHHHHHHHhCC-eEEEE
Confidence 7999999998753 344444444443 44443
No 342
>PRK07478 short chain dehydrogenase; Provisional
Probab=60.35 E-value=43 Score=28.05 Aligned_cols=79 Identities=13% Similarity=0.221 Sum_probs=45.0
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcC--------C
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMD--------G 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~--------~ 111 (218)
.-|.+|=.|.+.| ||.++. +.+.+.|.+++.+ ..+++. ....+.+...+..+.++..|..+.+.+. +
T Consensus 5 ~~k~~lItGas~g-iG~~ia--~~l~~~G~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 5 NGKVAIITGASSG-IGRAAA--KLFAREGAKVVVG-ARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCCEEEEeCCCCh-HHHHHH--HHHHHCCCEEEEE-eCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3478888888877 688865 3333335675444 444433 3333445555545777777773333222 2
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
+..+|.++.-|.
T Consensus 81 ~~~id~li~~ag 92 (254)
T PRK07478 81 FGGLDIAFNNAG 92 (254)
T ss_pred cCCCCEEEECCC
Confidence 347898887664
No 343
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=60.27 E-value=52 Score=29.92 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~i~~i~G 101 (218)
.-.|...+|-..|++..+....+= +++|+ +++-++ .++..++.++++....-.......+ .....|+.+.++..
T Consensus 37 ~~~p~~~~le~~la~l~g~~~a~~--~~sG~--~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 112 (369)
T cd00614 37 IGNPTVDALEKKLAALEGGEAALA--FSSGM--AAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDP 112 (369)
T ss_pred CCChhHHHHHHHHHHHHCCCCEEE--EcCHH--HHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCC
Confidence 357888899999999888877765 45566 555422 2233345665544222111111122 23356766555544
Q ss_pred CCCchhhcC-CCC-CccEEEEeCCcc--CcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMD-GLV-DIDFLVVDSRRK--DFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~-~l~-~fDfVFIDa~K~--~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+- .+.+. .++ ...+||+..--. ....-++.+ .+. +.|.++++||+...+
T Consensus 113 ~d--~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~ 167 (369)
T cd00614 113 DD--PEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATP 167 (369)
T ss_pred CC--HHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcch
Confidence 43 44343 343 678999875421 111123333 333 448999999996444
No 344
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=59.65 E-value=24 Score=30.34 Aligned_cols=96 Identities=23% Similarity=0.355 Sum_probs=58.0
Q ss_pred EEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCC--CccEEEEeC
Q 027826 45 IVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLV--DIDFLVVDS 122 (218)
Q Consensus 45 ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~--~fDfVFIDa 122 (218)
++=+|+ |=.|++ +|+.+.+ .|.-|+.++.+++.... .. ..-+...+++||++..++|.++. .+|.+....
T Consensus 3 iiIiG~--G~vG~~--va~~L~~-~g~~Vv~Id~d~~~~~~--~~-~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 3 IIIIGA--GRVGRS--VARELSE-EGHNVVLIDRDEERVEE--FL-ADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred EEEECC--cHHHHH--HHHHHHh-CCCceEEEEcCHHHHHH--Hh-hhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 344444 445556 4555544 34446667777754322 11 11123789999998888999875 899999998
Q ss_pred CccCcHHHHHHh--c-CCCCCeEEEEeCC
Q 027826 123 RRKDFARVLRLA--N-LSSRGAVLVCKNA 148 (218)
Q Consensus 123 ~K~~Y~~~~~~~--~-L~~~GgvIV~DNv 148 (218)
....---.+=.+ + +..|.-+.-+.|-
T Consensus 75 ~~d~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 75 GNDEVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred CCCHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 865444444443 3 4344556666665
No 345
>PRK12939 short chain dehydrogenase; Provisional
Probab=59.64 E-value=40 Score=27.83 Aligned_cols=78 Identities=19% Similarity=0.165 Sum_probs=43.3
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
+-++||=+|.+.| ||..+. ..+...+-+++.+ ..+++. ....+.+...+-.++++.+|.++.+.+..
T Consensus 6 ~~~~vlItGa~g~-iG~~la--~~l~~~G~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 6 AGKRALVTGAARG-LGAAFA--EALAEAGATVAFN-DGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCCEEEEeCCCCh-HHHHHH--HHHHHcCCEEEEE-eCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4578887776544 787754 3333334565544 444433 22333444444458888888844444332
Q ss_pred CCCccEEEEeC
Q 027826 112 LVDIDFLVVDS 122 (218)
Q Consensus 112 l~~fDfVFIDa 122 (218)
+.++|.|+.=+
T Consensus 82 ~~~id~vi~~a 92 (250)
T PRK12939 82 LGGLDGLVNNA 92 (250)
T ss_pred cCCCCEEEECC
Confidence 23688877544
No 346
>PRK06223 malate dehydrogenase; Reviewed
Probab=59.49 E-value=86 Score=27.72 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=50.8
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhC----CCceEEEEcCCCchhhcCCCCCccE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEA----GFSPQVITGEADDEELMDGLVDIDF 117 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~a----gl~i~~i~GdA~~~e~L~~l~~fDf 117 (218)
++|-=||+ |++|++++...+...- +. +...+.++++.... ..+.+. +...++....- .+ .+..-|+
T Consensus 3 ~KI~VIGa--G~vG~~ia~~la~~~~-~e-v~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d--~~---~~~~aDi 73 (307)
T PRK06223 3 KKISIIGA--GNVGATLAHLLALKEL-GD-VVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTND--YE---DIAGSDV 73 (307)
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCC-eE-EEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCC--HH---HHCCCCE
Confidence 57888887 8788887765554322 35 55556666654322 122221 11134432111 22 3457799
Q ss_pred EEEeCCccC----------------cHHHHHHh-cCCCCCeEEEEeC
Q 027826 118 LVVDSRRKD----------------FARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 118 VFIDa~K~~----------------Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
||+=+.... +.++++.+ +..+++=+|++-|
T Consensus 74 Vii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN 120 (307)
T PRK06223 74 VVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120 (307)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 998764322 34444444 4556444777777
No 347
>PRK08226 short chain dehydrogenase; Provisional
Probab=59.33 E-value=47 Score=27.90 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=45.1
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCC--------C
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDG--------L 112 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~--------l 112 (218)
.-+++|=.|.+.| ||.++. ..+...|.+++ ....++......+.+...+..+.++..|.+..+.+.. +
T Consensus 5 ~~~~~lItG~s~g-iG~~la--~~l~~~G~~Vv-~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 80 (263)
T PRK08226 5 TGKTALITGALQG-IGEGIA--RVFARHGANLI-LLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKE 80 (263)
T ss_pred CCCEEEEeCCCCh-HHHHHH--HHHHHCCCEEE-EecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3478888888766 688865 33333355644 4455543333333444445457777888843333332 2
Q ss_pred CCccEEEEeCC
Q 027826 113 VDIDFLVVDSR 123 (218)
Q Consensus 113 ~~fDfVFIDa~ 123 (218)
.+.|.++.-|.
T Consensus 81 ~~id~vi~~ag 91 (263)
T PRK08226 81 GRIDILVNNAG 91 (263)
T ss_pred CCCCEEEECCC
Confidence 47898887654
No 348
>PRK07049 methionine gamma-lyase; Validated
Probab=59.20 E-value=91 Score=29.31 Aligned_cols=120 Identities=13% Similarity=0.170 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCc-eEEEE
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS-PQVIT 100 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~-i~~i~ 100 (218)
.-.|....|-..|++..++..++= +++|. ++|.++ .++..+|.++++....-....... +.+...|++ +.+..
T Consensus 80 ~~~Pt~~~Le~~lA~leg~~~~iv--~~sG~--~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~ 155 (427)
T PRK07049 80 FNHPNSEIVEDRLAVYEGAESAAL--FSSGM--SAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFAD 155 (427)
T ss_pred CCCcCHHHHHHHHHHHhCCCcEEE--EccHH--HHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeC
Confidence 457888899999999999988777 45565 455422 233334667554433322233332 234578887 66654
Q ss_pred cCCCchhhcC----C-C--CCccEEEEeCCccC-------cHHHHHHhcCC----CCCeEEEEeCCCC
Q 027826 101 GEADDEELMD----G-L--VDIDFLVVDSRRKD-------FARVLRLANLS----SRGAVLVCKNAYS 150 (218)
Q Consensus 101 GdA~~~e~L~----~-l--~~fDfVFIDa~K~~-------Y~~~~~~~~L~----~~GgvIV~DNvl~ 150 (218)
+.- .+.+. . + +.-.+||+..- .+ -.++-++++.. ..|.+||+||++.
T Consensus 156 ~~d--~~~l~~~l~~~~~~~~tklv~lesP-~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~ 220 (427)
T PRK07049 156 GLS--EAAIGAAAEAAAAKGRVSLILIETP-ANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLL 220 (427)
T ss_pred CCC--HHHHHHHHHhhccCCCceEEEEECC-CCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcc
Confidence 432 33232 1 1 25789999843 21 11222223221 1367888999963
No 349
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=59.16 E-value=34 Score=29.75 Aligned_cols=77 Identities=12% Similarity=0.059 Sum_probs=41.1
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCC--ceEEEEcCCCchhhcCC-CCCccEE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGF--SPQVITGEADDEELMDG-LVDIDFL 118 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl--~i~~i~GdA~~~e~L~~-l~~fDfV 118 (218)
++||=.|. +|+||+.+ +..+...|-+++.+. .++........+. ..+. .++++.||..+.+.+.. ++.+|.|
T Consensus 5 ~~ilVtGa-tGfIG~~l--~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 80 (322)
T PLN02662 5 KVVCVTGA-SGYIASWL--VKLLLQRGYTVKATV-RDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGV 80 (322)
T ss_pred CEEEEECC-hHHHHHHH--HHHHHHCCCEEEEEE-cCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEE
Confidence 67776554 68888885 444433344644433 3333222222222 2222 28889999822222332 3478999
Q ss_pred EEeCC
Q 027826 119 VVDSR 123 (218)
Q Consensus 119 FIDa~ 123 (218)
|.=|.
T Consensus 81 ih~A~ 85 (322)
T PLN02662 81 FHTAS 85 (322)
T ss_pred EEeCC
Confidence 88775
No 350
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=58.86 E-value=13 Score=35.42 Aligned_cols=86 Identities=21% Similarity=0.261 Sum_probs=48.0
Q ss_pred CCeEEEeC-cCcchHHHHHH-HHHhcC-CCCcEEEEEEcCCccHHHHHHHHh----hCCCceEEEEcCCCchhhcCCCCC
Q 027826 42 ARLIVETW-SHGGATATSVG-LAVASR-HTGGRHVCLVPDERSRSEYVHALG----EAGFSPQVITGEADDEELMDGLVD 114 (218)
Q Consensus 42 ak~ILEiG-t~~GyiGsaig-lA~a~~-~~~G~vitt~e~~~~~~~~a~~~~----~agl~i~~i~GdA~~~e~L~~l~~ 114 (218)
.+.|.=+| ||.|= .||++ ||.-.. ..+.+-|..+-.|-.+..+.+.++ --|+.+++.....++.+.+..|..
T Consensus 203 ~~vi~LVGPTGVGK-TTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 203 KRVIALVGPTGVGK-TTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred CcEEEEECCCCCcH-HHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 34444555 56664 35655 554433 112222333334445565655553 456666666554444566777788
Q ss_pred ccEEEEeCCccCcH
Q 027826 115 IDFLVVDSRRKDFA 128 (218)
Q Consensus 115 fDfVFIDa~K~~Y~ 128 (218)
+|+||||..-..+.
T Consensus 282 ~d~ILVDTaGrs~~ 295 (407)
T COG1419 282 CDVILVDTAGRSQY 295 (407)
T ss_pred CCEEEEeCCCCCcc
Confidence 99999998754443
No 351
>PRK07063 short chain dehydrogenase; Provisional
Probab=58.81 E-value=47 Score=27.94 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=45.0
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhh--CCCceEEEEcCCCchhhcCC------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGE--AGFSPQVITGEADDEELMDG------ 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~--agl~i~~i~GdA~~~e~L~~------ 111 (218)
+-|++|=.|...| ||.++....+ +.|.+++.+ ..+++. .+.++.+.. .+..+.++..|.+..+.+..
T Consensus 6 ~~k~vlVtGas~g-IG~~~a~~l~--~~G~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK07063 6 AGKVALVTGAAQG-IGAAIARAFA--REGAAVALA-DLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAE 81 (260)
T ss_pred CCCEEEEECCCch-HHHHHHHHHH--HCCCEEEEE-eCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 4578898888777 6888653333 335675544 444433 333344443 34447777788733333322
Q ss_pred --CCCccEEEEeCC
Q 027826 112 --LVDIDFLVVDSR 123 (218)
Q Consensus 112 --l~~fDfVFIDa~ 123 (218)
..++|.++.-|.
T Consensus 82 ~~~g~id~li~~ag 95 (260)
T PRK07063 82 EAFGPLDVLVNNAG 95 (260)
T ss_pred HHhCCCcEEEECCC
Confidence 236888887654
No 352
>PRK06460 hypothetical protein; Provisional
Probab=58.78 E-value=78 Score=29.08 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHH-HHHhcCCCCcEEEEEEcC-CccHHHHHHHHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG-LAVASRHTGGRHVCLVPD-ERSRSEYVHALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaig-lA~a~~~~~G~vitt~e~-~~~~~~~a~~~~~agl~i~~i~G 101 (218)
.-.|...+|-..+++..+++.-+-+ ++|. .+|- +..++..+|.++++.... .+-...........|.++.++.-
T Consensus 42 ~~~p~~~~L~~~lA~l~g~~~~v~~--~sG~--~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~ 117 (376)
T PRK06460 42 EANPTVLELTKKIVELENAEMGVAF--SSGM--GAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNP 117 (376)
T ss_pred CCCccHHHHHHHHHHHhCCCcEEEe--CCHH--HHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECC
Confidence 5568888888999999988766554 4455 4443 223344446675553221 12233333444567776544432
Q ss_pred CCCchhhcCCC-C-CccEEEEeCCcc--CcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMDGL-V-DIDFLVVDSRRK--DFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~~l-~-~fDfVFIDa~K~--~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+. .+.++.+ . ..++||+..--. ...--.+.+ .+. +.|.+||+||+...+
T Consensus 118 ~~--~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~ 172 (376)
T PRK06460 118 GS--DNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTP 172 (376)
T ss_pred CC--HHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcc
Confidence 22 3444443 2 578999975421 111112222 333 448899999996533
No 353
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=58.69 E-value=39 Score=29.49 Aligned_cols=33 Identities=9% Similarity=0.181 Sum_probs=23.9
Q ss_pred CCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEE
Q 027826 113 VDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 113 ~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
.++|+||+=..-.+..+.++.+ ...+++.+||.
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence 5899999988767778888887 44444666653
No 354
>PRK06914 short chain dehydrogenase; Provisional
Probab=58.64 E-value=65 Score=27.39 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=42.5
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHH-HHHHHHhhCCC--ceEEEEcCCCchhhc-------CCC
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRS-EYVHALGEAGF--SPQVITGEADDEELM-------DGL 112 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~-~~a~~~~~agl--~i~~i~GdA~~~e~L-------~~l 112 (218)
+.||=.|.+.| +|.++... +.+.|-+++++ ..+++.. ...+.....+. .++++.+|.++.+.+ ..+
T Consensus 4 k~~lItGasg~-iG~~la~~--l~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 79 (280)
T PRK06914 4 KIAIVTGASSG-FGLLTTLE--LAKKGYLVIAT-MRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEI 79 (280)
T ss_pred CEEEEECCCch-HHHHHHHH--HHhCCCEEEEE-eCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhc
Confidence 56787787666 68886533 32334565544 4444332 22233334443 278888888443332 223
Q ss_pred CCccEEEEeCC
Q 027826 113 VDIDFLVVDSR 123 (218)
Q Consensus 113 ~~fDfVFIDa~ 123 (218)
.++|.|+.-|.
T Consensus 80 ~~id~vv~~ag 90 (280)
T PRK06914 80 GRIDLLVNNAG 90 (280)
T ss_pred CCeeEEEECCc
Confidence 46788887664
No 355
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=58.57 E-value=46 Score=30.84 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCCC--cEEEEEEcCCccHHHH---HHHHhhCCCceEEEEcCCCchhhcCCCCCccEEEEeCC
Q 027826 56 ATSVGLAVASRHTG--GRHVCLVPDERSRSEY---VHALGEAGFSPQVITGEADDEELMDGLVDIDFLVVDSR 123 (218)
Q Consensus 56 GsaiglA~a~~~~~--G~vitt~e~~~~~~~~---a~~~~~agl~i~~i~GdA~~~e~L~~l~~fDfVFIDa~ 123 (218)
||++++...+...+ -+++ ..|..|...-. +..+.+.|+.+.++...+ .-.+=+-+.+|+|++-|+
T Consensus 166 gTal~~l~~A~~~gk~~~V~-v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa--~~~~M~~~~Vd~VivGAd 235 (339)
T PRK06036 166 GTALGVIRSAVEQGKEIKVI-ACETRPLNQGSRLTTWELMQDNIPVTLITDSM--AGIVMRQGMVDKVIVGAD 235 (339)
T ss_pred chHHHHHHHHHHcCCceEEE-EcCCCchhhHHHHHHHHHHHcCCCEEEEehhH--HHHHhccCCCCEEEECcc
Confidence 67788443333212 2434 44666654432 456679999999998777 543322235999999877
No 356
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=58.54 E-value=40 Score=28.75 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=44.3
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
+-|.+|=.|.+.| ||.++....+ ..|.+++.+ ..+++. ....+.+...+-.+.++..|....+.+..
T Consensus 9 ~~k~vlVtGas~g-iG~~ia~~l~--~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (278)
T PRK08277 9 KGKVAVITGGGGV-LGGAMAKELA--RAGAKVAIL-DRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILED 84 (278)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHH--HCCCEEEEE-eCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4578888888777 6888664433 335574444 444432 23334444445457777787733332222
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
+.++|.++.-|.
T Consensus 85 ~g~id~li~~ag 96 (278)
T PRK08277 85 FGPCDILINGAG 96 (278)
T ss_pred cCCCCEEEECCC
Confidence 246888876543
No 357
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=58.51 E-value=89 Score=27.89 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=39.4
Q ss_pred eCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHH-HHHHhh--CCCc-eEEEEcCCCchhhcCCCCCccEEEEeCC
Q 027826 48 TWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY-VHALGE--AGFS-PQVITGEADDEELMDGLVDIDFLVVDSR 123 (218)
Q Consensus 48 iGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~-a~~~~~--agl~-i~~i~GdA~~~e~L~~l~~fDfVFIDa~ 123 (218)
||+ |++|++++++.+...-... ++.++.++++... +..+.+ +.+. .++..++- . +.+..-|+|++=+.
T Consensus 4 iGa--G~VG~~~a~~l~~~~~~~e-l~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~--~---~~l~~aDiVIitag 75 (300)
T cd00300 4 IGA--GNVGAAVAFALIAKGLASE-LVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD--Y---ADAADADIVVITAG 75 (300)
T ss_pred ECC--CHHHHHHHHHHHhcCCCCE-EEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC--H---HHhCCCCEEEEcCC
Confidence 454 7789998876665432245 5555666665432 333432 2222 44443322 2 24557899999887
Q ss_pred ccC
Q 027826 124 RKD 126 (218)
Q Consensus 124 K~~ 126 (218)
...
T Consensus 76 ~p~ 78 (300)
T cd00300 76 APR 78 (300)
T ss_pred CCC
Confidence 533
No 358
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=58.48 E-value=52 Score=27.60 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=43.6
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcCC--------C
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMDG--------L 112 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~~--------l 112 (218)
-|+||=+|...| ||..++-. +...+.+++.+. .+++. ...+..+.+.+..+.++..|..+.+.+.+ +
T Consensus 11 ~k~vlVtG~s~g-IG~~la~~--l~~~G~~vv~~~-r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 11 GKCAIITGAGAG-IGKEIAIT--FATAGASVVVSD-INADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CCEEEEECCCch-HHHHHHHH--HHHCCCeEEEEe-CCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 488999998877 68886533 323355655443 33332 23334444555456677777733333322 2
Q ss_pred CCccEEEEeCC
Q 027826 113 VDIDFLVVDSR 123 (218)
Q Consensus 113 ~~fDfVFIDa~ 123 (218)
..+|.++.=|.
T Consensus 87 ~~~d~li~~ag 97 (255)
T PRK06113 87 GKVDILVNNAG 97 (255)
T ss_pred CCCCEEEECCC
Confidence 36788877554
No 359
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=58.47 E-value=17 Score=35.33 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=42.9
Q ss_pred cCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCC--CCccEEEEeCC
Q 027826 50 SHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGL--VDIDFLVVDSR 123 (218)
Q Consensus 50 t~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l--~~fDfVFIDa~ 123 (218)
+|+|=.|.. +|+.+.+.+-. ++.+|.|+++.+.+ ++.| .+++.||++..++|.+. +..|.+++-..
T Consensus 423 ~G~G~~G~~--la~~L~~~g~~-vvvId~d~~~~~~~---~~~g--~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 423 VGYGRVGSL--LGEKLLAAGIP-LVVIETSRTRVDEL---RERG--IRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred ECCChHHHH--HHHHHHHCCCC-EEEEECCHHHHHHH---HHCC--CeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 344555555 56665543334 66677887654433 3344 68999999888899765 48998887643
No 360
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=58.14 E-value=79 Score=29.20 Aligned_cols=124 Identities=16% Similarity=0.131 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHH-HHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCceEEEE
Q 027826 23 LSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG-LAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFSPQVIT 100 (218)
Q Consensus 23 ~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaig-lA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~i~~i~ 100 (218)
+.-.|...+|-..|++..++..++= |.+|. .+|. +..++..+|.++++....-.........+. ..++.+.+..
T Consensus 47 R~~~p~~~~le~~lA~l~g~~~v~~--~~gg~--~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d 122 (382)
T TIGR02080 47 RSGNPTRDLLQQALAELEGGAGAVV--TNTGM--SAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVD 122 (382)
T ss_pred CCCCchHHHHHHHHHHHhCCCcEEE--EcCHH--HHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEEC
Confidence 3456888889899999999888863 33343 4443 223333445564443222221222223332 3344444443
Q ss_pred cCCCchhhcC-CCC-CccEEEEeCCcc--CcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 101 GEADDEELMD-GLV-DIDFLVVDSRRK--DFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 101 GdA~~~e~L~-~l~-~fDfVFIDa~K~--~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
.+ +.+.+. .+. .-++||+..--. .+.--++.+ .+. +.|.++|+||+...+
T Consensus 123 ~~--d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~ 178 (382)
T TIGR02080 123 QG--DEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSP 178 (382)
T ss_pred CC--CHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 22 234343 343 578999864321 121112333 332 348999999997544
No 361
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=58.11 E-value=60 Score=30.13 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=48.7
Q ss_pred cCCCeEEEeCcCcchHH-HHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcC-CCchhhcCCCCCccE
Q 027826 40 WDARLIVETWSHGGATA-TSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGE-ADDEELMDGLVDIDF 117 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiG-saiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~Gd-A~~~e~L~~l~~fDf 117 (218)
..-++|+=+|.+ |. | .++=+|+|+. .+ |+.+..++++.+.++.+ |-. .++.+. ++..+.++. .||+
T Consensus 165 ~pG~~V~I~G~G-Gl-Gh~avQ~Aka~g---a~-Via~~~~~~K~e~a~~l---GAd-~~i~~~~~~~~~~~~~--~~d~ 232 (339)
T COG1064 165 KPGKWVAVVGAG-GL-GHMAVQYAKAMG---AE-VIAITRSEEKLELAKKL---GAD-HVINSSDSDALEAVKE--IADA 232 (339)
T ss_pred CCCCEEEEECCc-HH-HHHHHHHHHHcC---Ce-EEEEeCChHHHHHHHHh---CCc-EEEEcCCchhhHHhHh--hCcE
Confidence 335688888877 75 2 2223777763 57 55667777666666543 433 333332 211444443 3998
Q ss_pred EEEeCCccCcHHHHHHhc-CCCCCeEEEEeCC
Q 027826 118 LVVDSRRKDFARVLRLAN-LSSRGAVLVCKNA 148 (218)
Q Consensus 118 VFIDa~K~~Y~~~~~~~~-L~~~GgvIV~DNv 148 (218)
|+.=+. ...+-+.++ |++.|-++++=+.
T Consensus 233 ii~tv~---~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 233 IIDTVG---PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEECCC---hhhHHHHHHHHhcCCEEEEECCC
Confidence 876554 222333333 3443444444444
No 362
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=57.78 E-value=6.6 Score=32.58 Aligned_cols=98 Identities=11% Similarity=0.074 Sum_probs=48.5
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCC--CccEEE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLV--DIDFLV 119 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~--~fDfVF 119 (218)
+--|||+|-+.|= |.=.|-+-+++ -+ |..++..-. .-. ....-+-+++.||+ .++|+.+. .--.+|
T Consensus 29 ~G~VlElGLGNGR--TydHLRe~~p~--R~-I~vfDR~l~---~hp--~~~P~~~~~ilGdi--~~tl~~~~~~g~~a~l 96 (160)
T PF12692_consen 29 PGPVLELGLGNGR--TYDHLREIFPD--RR-IYVFDRALA---CHP--SSTPPEEDLILGDI--RETLPALARFGAGAAL 96 (160)
T ss_dssp -S-EEEE--TTSH--HHHHHHHH--S--S--EEEEESS-----S-G--GG---GGGEEES-H--HHHHHHHHHH-S-EEE
T ss_pred CCceEEeccCCCc--cHHHHHHhCCC--Ce-EEEEeeecc---cCC--CCCCchHheeeccH--HHHhHHHHhcCCceEE
Confidence 3679999999998 77678887763 45 655555321 000 01111147899999 99999854 455566
Q ss_pred EeCCccCcHH-----HHHHh-----cCCCCCeEEEEeCCCCC
Q 027826 120 VDSRRKDFAR-----VLRLA-----NLSSRGAVLVCKNAYSR 151 (218)
Q Consensus 120 IDa~K~~Y~~-----~~~~~-----~L~~~GgvIV~DNvl~~ 151 (218)
+-||-+.+.+ ...++ .++.+||++|.+.=+.+
T Consensus 97 aHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~~ 138 (160)
T PF12692_consen 97 AHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLYH 138 (160)
T ss_dssp EEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS----
T ss_pred EEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcccC
Confidence 6655443332 22222 45555999999887643
No 363
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=57.65 E-value=17 Score=35.47 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=38.5
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEcCCCchhhcC
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGEADDEELMD 110 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~GdA~~~e~L~ 110 (218)
.+|.||||||. -+. ||.-+. .-. +|.+|.=.-+..+|+.+ .+.|.+ |.+|.-..|...+.+
T Consensus 69 ~vLdigtGTGL--LSm-MAvrag--aD~-vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~ 132 (636)
T KOG1501|consen 69 FVLDIGTGTGL--LSM-MAVRAG--ADS-VTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGG 132 (636)
T ss_pred EEEEccCCccH--HHH-HHHHhc--CCe-EEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecC
Confidence 46999999997 221 443322 224 55555555577777765 589998 888887773344443
No 364
>PRK07102 short chain dehydrogenase; Provisional
Probab=57.04 E-value=38 Score=28.14 Aligned_cols=76 Identities=12% Similarity=0.048 Sum_probs=40.4
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHH-HHHHHHhhC-CCceEEEEcCCCchhhcCC----CC-Cc
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRS-EYVHALGEA-GFSPQVITGEADDEELMDG----LV-DI 115 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~-~~a~~~~~a-gl~i~~i~GdA~~~e~L~~----l~-~f 115 (218)
++||=.|...| +|.++. ..+.+.|.+++.+ ..+++.. ...+.+... +-.++++..|.++.+.+.+ .. .+
T Consensus 2 ~~vlItGas~g-iG~~~a--~~l~~~G~~Vi~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (243)
T PRK07102 2 KKILIIGATSD-IARACA--RRYAAAGARLYLA-ARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALP 77 (243)
T ss_pred cEEEEEcCCcH-HHHHHH--HHHHhcCCEEEEE-eCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence 46777777665 677755 3333335574444 4444332 223333322 2237888888733333332 22 57
Q ss_pred cEEEEeC
Q 027826 116 DFLVVDS 122 (218)
Q Consensus 116 DfVFIDa 122 (218)
|.++.-+
T Consensus 78 d~vv~~a 84 (243)
T PRK07102 78 DIVLIAV 84 (243)
T ss_pred CEEEECC
Confidence 9988644
No 365
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.75 E-value=5.1 Score=34.01 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=46.0
Q ss_pred cCCCeEEEeCcCcchHHHHH-HHHHhcCCCCcEEEEEEcCCccHHHHHHHHh----hCCCc-eEE---EEcCCCchhhcC
Q 027826 40 WDARLIVETWSHGGATATSV-GLAVASRHTGGRHVCLVPDERSRSEYVHALG----EAGFS-PQV---ITGEADDEELMD 110 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsai-glA~a~~~~~G~vitt~e~~~~~~~~a~~~~----~agl~-i~~---i~GdA~~~e~L~ 110 (218)
.+.++|||+|. |+ |++ ||..|...+...|..| +.+++...-.+... .+++. +.+ ..--| .+ .
T Consensus 28 ~rg~~ilelgg--gf--t~laglmia~~a~~~~v~lt-dgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a--qs--q 98 (201)
T KOG3201|consen 28 IRGRRILELGG--GF--TGLAGLMIACKAPDSSVWLT-DGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA--QS--Q 98 (201)
T ss_pred HhHHHHHHhcC--ch--hhhhhhheeeecCCceEEEe-cCCHHHHHHHHHHHhcccccccceehhhHHHHhhh--HH--H
Confidence 34589999875 55 444 4555555445564455 45554433333222 24444 222 11122 11 1
Q ss_pred CCC-CccEEEE-eCC--ccCcHHHHHHh--cCCCCCeEEE
Q 027826 111 GLV-DIDFLVV-DSR--RKDFARVLRLA--NLSSRGAVLV 144 (218)
Q Consensus 111 ~l~-~fDfVFI-Da~--K~~Y~~~~~~~--~L~~~GgvIV 144 (218)
+.. .||+|+- ||- ++......+.+ .|.|+|.-++
T Consensus 99 ~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 99 QEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred HhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeE
Confidence 222 7887753 332 23333444445 5667676544
No 366
>PRK07454 short chain dehydrogenase; Provisional
Probab=56.73 E-value=46 Score=27.54 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=43.8
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHH-HHHHHHhhCCCceEEEEcCCCchhhcCC--------C
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRS-EYVHALGEAGFSPQVITGEADDEELMDG--------L 112 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~-~~a~~~~~agl~i~~i~GdA~~~e~L~~--------l 112 (218)
-|++|=.|...| +|..+. ..+.+.+.+++. ...+++.. ...+.+...+..+.++.+|.++.+.+.. +
T Consensus 6 ~k~vlItG~sg~-iG~~la--~~l~~~G~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 6 MPRALITGASSG-IGKATA--LAFAKAGWDLAL-VARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCEEEEeCCCch-HHHHHH--HHHHHCCCEEEE-EeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 467888887555 677754 444333556444 45555332 2333344444447788898844443322 2
Q ss_pred CCccEEEEeCC
Q 027826 113 VDIDFLVVDSR 123 (218)
Q Consensus 113 ~~fDfVFIDa~ 123 (218)
.+.|.++.-+.
T Consensus 82 ~~id~lv~~ag 92 (241)
T PRK07454 82 GCPDVLINNAG 92 (241)
T ss_pred CCCCEEEECCC
Confidence 36899987664
No 367
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=56.53 E-value=55 Score=27.08 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=40.7
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHH-HHHHHHhhCCCceEEEEcCCCchhhc--------CCCC
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRS-EYVHALGEAGFSPQVITGEADDEELM--------DGLV 113 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~-~~a~~~~~agl~i~~i~GdA~~~e~L--------~~l~ 113 (218)
++||=.|.. |++|..+. ..+.+.+.+++.+ ..+++.. .....+...+-.++++.+|..+.+.+ +.+.
T Consensus 2 ~~vlItGa~-g~lG~~l~--~~l~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (255)
T TIGR01963 2 KTALVTGAA-SGIGLAIA--LALAAAGANVVVN-DLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFG 77 (255)
T ss_pred CEEEEcCCc-chHHHHHH--HHHHHCCCEEEEE-eCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 456666644 55787754 3333335574444 4444332 22233344444478888888444322 2244
Q ss_pred CccEEEEeC
Q 027826 114 DIDFLVVDS 122 (218)
Q Consensus 114 ~fDfVFIDa 122 (218)
+.|.|+.-+
T Consensus 78 ~~d~vi~~a 86 (255)
T TIGR01963 78 GLDILVNNA 86 (255)
T ss_pred CCCEEEECC
Confidence 789888766
No 368
>PRK07024 short chain dehydrogenase; Provisional
Probab=56.52 E-value=41 Score=28.38 Aligned_cols=76 Identities=11% Similarity=0.125 Sum_probs=41.7
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEcCCCchhhcCC--------CC
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITGEADDEELMDG--------LV 113 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~GdA~~~e~L~~--------l~ 113 (218)
++||=.|.+.| ||.++. ..+...|.+++.+ ..+++... ..+.+...+ .+.++..|.++.+.+.+ +.
T Consensus 3 ~~vlItGas~g-IG~~la--~~l~~~G~~v~~~-~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g 77 (257)
T PRK07024 3 LKVFITGASSG-IGQALA--REYARQGATLGLV-ARRTDALQAFAARLPKAA-RVSVYAADVRDADALAAAAADFIAAHG 77 (257)
T ss_pred CEEEEEcCCcH-HHHHHH--HHHHHCCCEEEEE-eCCHHHHHHHHHhcccCC-eeEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 56777787766 688865 3333335575444 45444322 222222223 57778888844443322 23
Q ss_pred CccEEEEeCC
Q 027826 114 DIDFLVVDSR 123 (218)
Q Consensus 114 ~fDfVFIDa~ 123 (218)
.+|.++.-|.
T Consensus 78 ~id~lv~~ag 87 (257)
T PRK07024 78 LPDVVIANAG 87 (257)
T ss_pred CCCEEEECCC
Confidence 5898887653
No 369
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=56.46 E-value=28 Score=33.38 Aligned_cols=83 Identities=17% Similarity=0.250 Sum_probs=44.1
Q ss_pred CCCeEEEeCc-CcchHHHHHH--HHHhcCCCCcEEEEEEcCCccHHHHHHHHh----hCCCceEEEEcCC-CchhhcCCC
Q 027826 41 DARLIVETWS-HGGATATSVG--LAVASRHTGGRHVCLVPDERSRSEYVHALG----EAGFSPQVITGEA-DDEELMDGL 112 (218)
Q Consensus 41 ~ak~ILEiGt-~~GyiGsaig--lA~a~~~~~G~vitt~e~~~~~~~~a~~~~----~agl~i~~i~GdA-~~~e~L~~l 112 (218)
+++.|+=+|. |+|= |++. ||..+...+-+ +..+..|+.+..+...+. ..|+.+... .++ ++.+.|..+
T Consensus 240 ~~~vI~LVGptGvGK--TTTiaKLA~~L~~~Gkk-VglI~aDt~RiaAvEQLk~yae~lgipv~v~-~d~~~L~~aL~~l 315 (436)
T PRK11889 240 EVQTIALIGPTGVGK--TTTLAKMAWQFHGKKKT-VGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYF 315 (436)
T ss_pred CCcEEEEECCCCCcH--HHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHhhhcCCcEEec-CCHHHHHHHHHHH
Confidence 4567777775 4443 3333 66655443334 555556665544444442 455543322 232 122334434
Q ss_pred C---CccEEEEeCCccCc
Q 027826 113 V---DIDFLVVDSRRKDF 127 (218)
Q Consensus 113 ~---~fDfVFIDa~K~~Y 127 (218)
. .+|+||||..-..+
T Consensus 316 k~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 316 KEEARVDYILIDTAGKNY 333 (436)
T ss_pred HhccCCCEEEEeCccccC
Confidence 3 59999999986655
No 370
>PRK08589 short chain dehydrogenase; Validated
Probab=56.30 E-value=53 Score=28.08 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=45.0
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCC--------C
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDG--------L 112 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~--------l 112 (218)
.-|.+|=.|.+.| ||.+++-. +...|.+++.+ ..++......+.+.+.+-.+.++..|.+..+.+.. +
T Consensus 5 ~~k~vlItGas~g-IG~aia~~--l~~~G~~vi~~-~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 5 ENKVAVITGASTG-IGQASAIA--LAQEGAYVLAV-DIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCEEEEECCCch-HHHHHHHH--HHHCCCEEEEE-eCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 3578888888887 68886533 33336675554 44443333444454445446667777633332322 2
Q ss_pred CCccEEEEeCC
Q 027826 113 VDIDFLVVDSR 123 (218)
Q Consensus 113 ~~fDfVFIDa~ 123 (218)
..+|.++.-|.
T Consensus 81 g~id~li~~Ag 91 (272)
T PRK08589 81 GRVDVLFNNAG 91 (272)
T ss_pred CCcCEEEECCC
Confidence 36888887664
No 371
>PRK05599 hypothetical protein; Provisional
Probab=56.26 E-value=51 Score=27.78 Aligned_cols=75 Identities=17% Similarity=0.129 Sum_probs=41.6
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCc-eEEEEcCCCchhhcCC--------CC
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFS-PQVITGEADDEELMDG--------LV 113 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~-i~~i~GdA~~~e~L~~--------l~ 113 (218)
.+|=.|.+.| ||.+++ +.+.+ +.+++.+ ..+++. .+.++.+.+.|-. +.++..|..+.+.+.. ..
T Consensus 2 ~vlItGas~G-IG~aia--~~l~~-g~~Vil~-~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 76 (246)
T PRK05599 2 SILILGGTSD-IAGEIA--TLLCH-GEDVVLA-ARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAG 76 (246)
T ss_pred eEEEEeCccH-HHHHHH--HHHhC-CCEEEEE-eCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence 4666788777 577754 43433 6675554 344443 3344455555533 6667777633333322 24
Q ss_pred CccEEEEeCC
Q 027826 114 DIDFLVVDSR 123 (218)
Q Consensus 114 ~fDfVFIDa~ 123 (218)
++|.++.-|.
T Consensus 77 ~id~lv~nag 86 (246)
T PRK05599 77 EISLAVVAFG 86 (246)
T ss_pred CCCEEEEecC
Confidence 7888886554
No 372
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=56.17 E-value=10 Score=35.19 Aligned_cols=46 Identities=13% Similarity=0.258 Sum_probs=35.8
Q ss_pred eEEEEcCCCchhhcCCCC---CccEE----EEeCCccCcHHHHHHh-cCCCCCeEEE
Q 027826 96 PQVITGEADDEELMDGLV---DIDFL----VVDSRRKDFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 96 i~~i~GdA~~~e~L~~l~---~fDfV----FIDa~K~~Y~~~~~~~-~L~~~GgvIV 144 (218)
..+-.||- +|+-+.-. .||.| |||.. ++-.+|++.+ +++++||+.|
T Consensus 240 fsicaGDF--~evy~~s~~~~~~d~VvTcfFIDTa-~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 240 FSICAGDF--LEVYGTSSGAGSYDVVVTCFFIDTA-HNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred ccccccce--eEEecCcCCCCccceEEEEEEeech-HHHHHHHHHHHHhccCCcEEE
Confidence 34455888 88777643 78876 89997 8899999999 7777799987
No 373
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=55.96 E-value=90 Score=30.46 Aligned_cols=119 Identities=19% Similarity=0.225 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEA 103 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA 103 (218)
...|.+-+.+..+.... -.++-.-||+|= |...+.-++.. +|..+.+.+...-+.+..+.+...|+.+..+.++-
T Consensus 13 ~fr~~Q~~~i~~il~g~--dvlv~~PTG~GK--Tl~y~lpal~~-~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~ 87 (591)
T TIGR01389 13 DFRPGQEEIISHVLDGR--DVLVVMPTGGGK--SLCYQVPALLL-KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTL 87 (591)
T ss_pred CCCHHHHHHHHHHHcCC--CEEEEcCCCccH--hHHHHHHHHHc-CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 34577778887777655 468888999997 66655555443 45544444443323344455667888777777765
Q ss_pred Cchh---hcCCC--CCccEEEEeCCccCcHHHHHHhcCCCCCeEEEEeCC
Q 027826 104 DDEE---LMDGL--VDIDFLVVDSRRKDFARVLRLANLSSRGAVLVCKNA 148 (218)
Q Consensus 104 ~~~e---~L~~l--~~fDfVFIDa~K~~Y~~~~~~~~L~~~GgvIV~DNv 148 (218)
+..+ .+..+ .++|++++-..+-.-..+.+.+...+ =++||+|.+
T Consensus 88 ~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~-l~~iViDEa 136 (591)
T TIGR01389 88 SAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIP-IALVAVDEA 136 (591)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCC-CCEEEEeCC
Confidence 2121 23333 37899998766543333444443333 568899976
No 374
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=55.81 E-value=55 Score=30.78 Aligned_cols=122 Identities=11% Similarity=0.118 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~G 101 (218)
.-.|...+|-..|++..+++..+= +++|. .+|-++ .++..+|.++++....-..... .++.+...|+++.+...
T Consensus 55 ~~~pt~~~Le~~lA~l~g~~~~l~--~ssG~--~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~ 130 (425)
T PRK06084 55 IMNPTNDVLEQRVAALEGGVGALA--VASGM--AAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAH 130 (425)
T ss_pred CCCchHHHHHHHHHHHhCCCceeE--ehhHH--HHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECC
Confidence 567889999999999999887764 55565 444322 2333446675554221111111 12222234544444433
Q ss_pred CCCchhhcCC-CC-CccEEEEeC--Cc-cCcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMDG-LV-DIDFLVVDS--RR-KDFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~~-l~-~fDfVFIDa--~K-~~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+- .+.|.+ +. ...+|++.. +. ....+ ++.+ .+. +.|.+||+||+...+
T Consensus 131 ~d--~e~le~ai~~~tklV~lesp~NPtG~v~d-l~~I~~la~~~~i~vVvD~a~a~~ 185 (425)
T PRK06084 131 DD--IAALEALIDERTKAVFCESIGNPAGNIID-IQALADAAHRHGVPLIVDNTVATP 185 (425)
T ss_pred CC--HHHHHHHhccCCcEEEEeCCCCCCCeecC-HHHHHHHHHHcCCEEEEECCCccc
Confidence 22 444443 33 578999863 22 12222 2333 332 347899999998644
No 375
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=55.80 E-value=82 Score=29.61 Aligned_cols=106 Identities=16% Similarity=0.110 Sum_probs=56.4
Q ss_pred HHHH--hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH---Hh----hCCCceEEEEcCCCc
Q 027826 35 AMAA--GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA---LG----EAGFSPQVITGEADD 105 (218)
Q Consensus 35 ~L~~--~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~---~~----~agl~i~~i~GdA~~ 105 (218)
+|+. +.+...++++|||-|= -.+=+-+|.- +.+|+++--+-...++.+. +. +.-+.++|+.||...
T Consensus 109 ~LI~~y~~~~~~~~~LgCGKGG--DLlKw~kAgI---~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 109 VLINLYTKRGDDVLDLGCGKGG--DLLKWDKAGI---GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHhccccccceeccCCcc--cHhHhhhhcc---cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 4444 4577789999999885 6664444422 4567765444444444332 21 122338999999922
Q ss_pred hhhcCCC---CC-ccEE-----EEeCCc--cCcHHHHHHh-cCCCCCeEEEE
Q 027826 106 EELMDGL---VD-IDFL-----VVDSRR--KDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 106 ~e~L~~l---~~-fDfV-----FIDa~K--~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
..+...+ ++ ||+| |-=|.- ++-...+.-+ ..++|||+.|.
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred hHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 2222233 24 8865 222321 1112223333 66667999875
No 376
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=55.78 E-value=1e+02 Score=29.17 Aligned_cols=122 Identities=12% Similarity=0.070 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcCCccHHHH-HHHHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSEY-VHALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~~~~~~~~-a~~~~~agl~i~~i~G 101 (218)
.-.|.+.+|=..+++..+++.. +-|.+|. ++|-++ .++..+|.++|++...-...... ...+.+.|+++.++.-
T Consensus 61 ~~~p~~~~le~~lA~l~g~~~a--v~~sSGt--~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~ 136 (433)
T PRK08134 61 ISNPTVAVLEERVAALEGGVGA--IATASGQ--AALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKP 136 (433)
T ss_pred CcChHHHHHHHHHHHHhCCCcE--EEeCCHH--HHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECC
Confidence 5678999999999999999885 5688887 565422 22233466766653222211222 2223467876555543
Q ss_pred CCCchhhcCC-CC-CccEEEEeCCccCc---HHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMDG-LV-DIDFLVVDSRRKDF---ARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~~-l~-~fDfVFIDa~K~~Y---~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+- .+.+.. ++ .-.+|++-.- .+- ..-++.+ .+. +.|..+|+||+...|
T Consensus 137 ~d--~~~l~~~i~~~TklV~~e~~-~np~g~v~Di~~I~~la~~~gi~livD~t~a~~ 191 (433)
T PRK08134 137 GD--IDGWRAAIRPNTRLLFGETL-GNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTP 191 (433)
T ss_pred CC--HHHHHHhcCCCCeEEEEECC-CcccCcccCHHHHHHHHHHcCCEEEEECCCccc
Confidence 32 444443 44 5678888764 221 1223333 333 448899999997544
No 377
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=55.72 E-value=51 Score=27.41 Aligned_cols=76 Identities=12% Similarity=0.116 Sum_probs=40.5
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcCC--------CC
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMDG--------LV 113 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~~--------l~ 113 (218)
|.+|=.|++.| ||..+. +.+.+.+.+++.+ ..++.. ....+.+...+..+.++..|.++.+.+.+ +.
T Consensus 1 k~~lItG~sg~-iG~~la--~~l~~~G~~v~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~ 76 (254)
T TIGR02415 1 KVALVTGGAQG-IGKGIA--ERLAKDGFAVAVA-DLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFG 76 (254)
T ss_pred CEEEEeCCCch-HHHHHH--HHHHHCCCEEEEE-eCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35666776544 677754 4443435564443 444432 22334444556557788888744333322 23
Q ss_pred CccEEEEeC
Q 027826 114 DIDFLVVDS 122 (218)
Q Consensus 114 ~fDfVFIDa 122 (218)
+.|.++.-+
T Consensus 77 ~id~vi~~a 85 (254)
T TIGR02415 77 GFDVMVNNA 85 (254)
T ss_pred CCCEEEECC
Confidence 678877654
No 378
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=55.60 E-value=90 Score=28.62 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=41.8
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCc---------------------cHHHH-HHHHhh--CCCce
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDER---------------------SRSEY-VHALGE--AGFSP 96 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~---------------------~~~~~-a~~~~~--agl~i 96 (218)
+..+||=||+| -+||.+....+... -|+ ++.++.+. .+.++ ++.+.+ ..+.+
T Consensus 23 ~~~~VlVvG~G--glGs~va~~La~aG-vg~-i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v 98 (339)
T PRK07688 23 REKHVLIIGAG--ALGTANAEMLVRAG-VGK-VTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV 98 (339)
T ss_pred cCCcEEEECCC--HHHHHHHHHHHHcC-CCe-EEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence 45678888884 37888874444332 356 55555542 12233 344443 33346
Q ss_pred EEEEcCCCchhhcCCCCCccEEEEeCC
Q 027826 97 QVITGEADDEELMDGLVDIDFLVVDSR 123 (218)
Q Consensus 97 ~~i~GdA~~~e~L~~l~~fDfVFIDa~ 123 (218)
+.+..+.+..+..+-+..||+|+.=.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~D 125 (339)
T PRK07688 99 EAIVQDVTAEELEELVTGVDLIIDATD 125 (339)
T ss_pred EEEeccCCHHHHHHHHcCCCEEEEcCC
Confidence 667666622222223468997654334
No 379
>PRK07806 short chain dehydrogenase; Provisional
Probab=55.20 E-value=1.1e+02 Score=25.30 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=44.3
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCcc-HHHHHHHHhhCCCceEEEEcCCCchhhcCC-------
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERS-RSEYVHALGEAGFSPQVITGEADDEELMDG------- 111 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~-~~~~a~~~~~agl~i~~i~GdA~~~e~L~~------- 111 (218)
+..++||=.|...| ||.++. ..+...|-+++.+....+. ....+..+...+..+.++.+|.+..+.+..
T Consensus 4 ~~~k~vlItGasgg-iG~~l~--~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 4 LPGKTALVTGSSRG-IGADTA--KILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCCcEEEEECCCCc-HHHHHH--HHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 34578888887766 688854 3333334565444322222 222233344444447778888844443322
Q ss_pred -CCCccEEEEeCC
Q 027826 112 -LVDIDFLVVDSR 123 (218)
Q Consensus 112 -l~~fDfVFIDa~ 123 (218)
+..+|.++.-|.
T Consensus 81 ~~~~~d~vi~~ag 93 (248)
T PRK07806 81 EFGGLDALVLNAS 93 (248)
T ss_pred hCCCCcEEEECCC
Confidence 236888887664
No 380
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=55.19 E-value=44 Score=28.15 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=44.1
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCC--------C
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDG--------L 112 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~--------l 112 (218)
.-|+||=.|.+.| ||.+++-. +.+.|.+++.+ ..++......+.+.+.+-.++++.+|.+..+.+.. +
T Consensus 14 ~~k~vlItGas~g-IG~~ia~~--l~~~G~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 14 DGKVAIVTGGNTG-LGQGYAVA--LAKAGADIIIT-THGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CCCEEEEeCCCch-HHHHHHHH--HHHCCCEEEEE-eCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4588999898887 68886533 32335564443 33333333334444444347778888843333322 2
Q ss_pred CCccEEEEeC
Q 027826 113 VDIDFLVVDS 122 (218)
Q Consensus 113 ~~fDfVFIDa 122 (218)
+.+|.++.=+
T Consensus 90 g~id~li~~a 99 (258)
T PRK06935 90 GKIDILVNNA 99 (258)
T ss_pred CCCCEEEECC
Confidence 3678877644
No 381
>PRK06720 hypothetical protein; Provisional
Probab=54.95 E-value=83 Score=25.63 Aligned_cols=80 Identities=13% Similarity=0.166 Sum_probs=41.1
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcC--------CC
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMD--------GL 112 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~--------~l 112 (218)
..+.+|=.|.+.| ||.++. ..+.+.|.+++.+....+.....++.+...+-.+.++..|.++.+.+. .+
T Consensus 15 ~gk~~lVTGa~~G-IG~aia--~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~ 91 (169)
T PRK06720 15 AGKVAIVTGGGIG-IGRNTA--LLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAF 91 (169)
T ss_pred CCCEEEEecCCCh-HHHHHH--HHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5677888787777 677755 333333667555543322222233444444434455555652222222 22
Q ss_pred CCccEEEEeCC
Q 027826 113 VDIDFLVVDSR 123 (218)
Q Consensus 113 ~~fDfVFIDa~ 123 (218)
..+|.++..|.
T Consensus 92 G~iDilVnnAG 102 (169)
T PRK06720 92 SRIDMLFQNAG 102 (169)
T ss_pred CCCCEEEECCC
Confidence 36777777665
No 382
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=54.92 E-value=50 Score=29.72 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=42.4
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCC--cEEEEEEcCCccHH--HHHHHHhhCCCceEEEEcCCCchhhcCCCCCccEE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTG--GRHVCLVPDERSRS--EYVHALGEAGFSPQVITGEADDEELMDGLVDIDFL 118 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~--G~vitt~e~~~~~~--~~a~~~~~agl~i~~i~GdA~~~e~L~~l~~fDfV 118 (218)
..||=.+ ++||.++....+...+ =+ |...|..|... ..++.+.+.|+.+.++...+ .-.+ +...|.|
T Consensus 111 ~~ILTh~----~S~tv~~~l~~A~~~gk~~~-V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Dsa--~~~~--m~~vd~V 181 (275)
T PRK08335 111 DVIITHS----FSSAVLEILKTAKRKGKRFK-VILTESAPDYEGLALANELEFLGIEFEVITDAQ--LGLF--AKEATLA 181 (275)
T ss_pred CEEEEEC----CcHHHHHHHHHHHHcCCceE-EEEecCCCchhHHHHHHHHHHCCCCEEEEeccH--HHHH--HHhCCEE
Confidence 3566643 3467777433333212 24 34446666543 34677789999999998777 5433 2347777
Q ss_pred EEeCC
Q 027826 119 VVDSR 123 (218)
Q Consensus 119 FIDa~ 123 (218)
++-|+
T Consensus 182 ivGAD 186 (275)
T PRK08335 182 LVGAD 186 (275)
T ss_pred EECcc
Confidence 77655
No 383
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=54.88 E-value=62 Score=29.94 Aligned_cols=124 Identities=13% Similarity=0.114 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~G 101 (218)
.-.|...+|=..+++..+++..+= +++|. +++-++ .++..+|.++++....-..... ........|..+.++.-
T Consensus 56 ~~~p~~~~le~~lA~l~g~~~av~--~~sG~--~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~ 131 (391)
T TIGR01328 56 LGNPTVSNLEGRIAFLEGTEAAVA--TSSGM--GAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINM 131 (391)
T ss_pred CCCchHHHHHHHHHHHhCCCcEEE--ECCHH--HHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECC
Confidence 567889999999999999998654 66666 555422 2333345665554322211112 22233466766554433
Q ss_pred CCCchhhcCCCC-CccEEEEeCCccCc--HHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMDGLV-DIDFLVVDSRRKDF--ARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~~l~-~fDfVFIDa~K~~Y--~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+- +.++...+. .-.+||+..--.-. ..-++.+ .+. +.|..+|+||+...+
T Consensus 132 ~d-~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~ 186 (391)
T TIGR01328 132 AI-PEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATP 186 (391)
T ss_pred CC-HHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchh
Confidence 32 133333343 67899987542111 1112333 332 448899999997544
No 384
>PRK08643 acetoin reductase; Validated
Probab=54.84 E-value=55 Score=27.35 Aligned_cols=76 Identities=11% Similarity=0.153 Sum_probs=41.8
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHH-HHHHHHhhCCCceEEEEcCCCchhhcCC--------CC
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRS-EYVHALGEAGFSPQVITGEADDEELMDG--------LV 113 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~-~~a~~~~~agl~i~~i~GdA~~~e~L~~--------l~ 113 (218)
|.+|=+|.+.| ||..+. +.+.+.+.+++.+ ..+++.. ..+..+.+.+-.+.++..|.+..+.+.+ +.
T Consensus 3 k~~lItGas~g-iG~~la--~~l~~~G~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 3 KVALVTGAGQG-IGFAIA--KRLVEDGFKVAIV-DYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CEEEEECCCCh-HHHHHH--HHHHHCCCEEEEE-eCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56777787766 688765 3333335575444 4444332 3334444444446777777733333322 23
Q ss_pred CccEEEEeC
Q 027826 114 DIDFLVVDS 122 (218)
Q Consensus 114 ~fDfVFIDa 122 (218)
++|.++.-|
T Consensus 79 ~id~vi~~a 87 (256)
T PRK08643 79 DLNVVVNNA 87 (256)
T ss_pred CCCEEEECC
Confidence 688887765
No 385
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=54.70 E-value=39 Score=30.27 Aligned_cols=87 Identities=21% Similarity=0.276 Sum_probs=55.3
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHh-hCCCceEEEEcCCCchhhcCC----C-
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALG-EAGFSPQVITGEADDEELMDG----L- 112 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~-~agl~i~~i~GdA~~~e~L~~----l- 112 (218)
++-+.+|=-|.+.| ||-. +|+.+...|-.+|. +-+++++ .+.++.+. +.|++++++.-|-...+.+.. +
T Consensus 4 ~~~~~~lITGASsG-IG~~--~A~~lA~~g~~liL-vaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~ 79 (265)
T COG0300 4 MKGKTALITGASSG-IGAE--LAKQLARRGYNLIL-VARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELK 79 (265)
T ss_pred CCCcEEEEECCCch-HHHH--HHHHHHHCCCEEEE-EeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHH
Confidence 45578888899988 6777 45555444556444 4565654 55667775 678888888777522222222 2
Q ss_pred ---CCccEEEEeCCccCcHHH
Q 027826 113 ---VDIDFLVVDSRRKDFARV 130 (218)
Q Consensus 113 ---~~fDfVFIDa~K~~Y~~~ 130 (218)
.++|.+..-|--..|..+
T Consensus 80 ~~~~~IdvLVNNAG~g~~g~f 100 (265)
T COG0300 80 ERGGPIDVLVNNAGFGTFGPF 100 (265)
T ss_pred hcCCcccEEEECCCcCCccch
Confidence 278988888877777643
No 386
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=54.48 E-value=43 Score=28.23 Aligned_cols=74 Identities=22% Similarity=0.222 Sum_probs=40.0
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcC--------CCCC
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMD--------GLVD 114 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~--------~l~~ 114 (218)
+||=.|.+.| ||.++... +.+.|.+++.+ ..+++. ....+.+.+.+ .+.++..|.++.+.+. .+.+
T Consensus 2 ~vlItGas~g-IG~aia~~--l~~~G~~V~~~-~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~~~~~~~~~~~~~g~ 76 (259)
T PRK08340 2 NVLVTASSRG-IGFNVARE--LLKKGARVVIS-SRNEENLEKALKELKEYG-EVYAVKADLSDKDDLKNLVKEAWELLGG 76 (259)
T ss_pred eEEEEcCCcH-HHHHHHHH--HHHcCCEEEEE-eCCHHHHHHHHHHHHhcC-CceEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 5677788877 67776533 33335675444 444433 22333443333 3666777763333222 2347
Q ss_pred ccEEEEeC
Q 027826 115 IDFLVVDS 122 (218)
Q Consensus 115 fDfVFIDa 122 (218)
+|.++.-|
T Consensus 77 id~li~na 84 (259)
T PRK08340 77 IDALVWNA 84 (259)
T ss_pred CCEEEECC
Confidence 88887654
No 387
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=54.45 E-value=34 Score=32.61 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=46.3
Q ss_pred CCCeEEEeC-cCcchHHHHHH--HHHhcCCCCcEEEEEEcCCccHHHHHHHHh----hCCCceEEEEcCC-CchhhcCCC
Q 027826 41 DARLIVETW-SHGGATATSVG--LAVASRHTGGRHVCLVPDERSRSEYVHALG----EAGFSPQVITGEA-DDEELMDGL 112 (218)
Q Consensus 41 ~ak~ILEiG-t~~GyiGsaig--lA~a~~~~~G~vitt~e~~~~~~~~a~~~~----~agl~i~~i~GdA-~~~e~L~~l 112 (218)
+.+.|+=+| +|+|= |++. ||..+...+-+ |..+..|+.+..+...|+ ..|+.+.. ..++ ++.+.|..+
T Consensus 205 ~~~ii~lvGptGvGK--TTt~akLA~~l~~~g~~-V~lItaDtyR~gAveQLk~yae~lgvpv~~-~~dp~dL~~al~~l 280 (407)
T PRK12726 205 NHRIISLIGQTGVGK--TTTLVKLGWQLLKQNRT-VGFITTDTFRSGAVEQFQGYADKLDVELIV-ATSPAELEEAVQYM 280 (407)
T ss_pred CCeEEEEECCCCCCH--HHHHHHHHHHHHHcCCe-EEEEeCCccCccHHHHHHHHhhcCCCCEEe-cCCHHHHHHHHHHH
Confidence 455566667 56665 4433 66555333334 555566666554444443 34544332 2343 112233333
Q ss_pred ---CCccEEEEeCCccCc--HHHHHHh
Q 027826 113 ---VDIDFLVVDSRRKDF--ARVLRLA 134 (218)
Q Consensus 113 ---~~fDfVFIDa~K~~Y--~~~~~~~ 134 (218)
..+|+||||..-..+ .+.++.+
T Consensus 281 ~~~~~~D~VLIDTAGr~~~d~~~l~EL 307 (407)
T PRK12726 281 TYVNCVDHILIDTVGRNYLAEESVSEI 307 (407)
T ss_pred HhcCCCCEEEEECCCCCccCHHHHHHH
Confidence 369999999875433 3344444
No 388
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=54.18 E-value=30 Score=32.34 Aligned_cols=66 Identities=9% Similarity=0.071 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCCCcEE--EEEEcCCccHHHH---HHHHhhCCCceEEEEcCCCchhhcCCCCCccEEEEeCC
Q 027826 55 TATSVGLAVASRHTGGRH--VCLVPDERSRSEY---VHALGEAGFSPQVITGEADDEELMDGLVDIDFLVVDSR 123 (218)
Q Consensus 55 iGsaiglA~a~~~~~G~v--itt~e~~~~~~~~---a~~~~~agl~i~~i~GdA~~~e~L~~l~~fDfVFIDa~ 123 (218)
.||++|....+.. .|+. |...|..|...-. +..+.++|+.+.++...+ .-.+=.-..+|.|++-|+
T Consensus 177 ~gTal~vi~~A~~-~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa--v~~~M~~~~Vd~VivGAd 247 (356)
T PRK08334 177 LGTVGAVLRVMHK-DGTLKLLWVDETRPVLQGARLSAWEYHYDGIPLKLISDNM--AGFVMQQGKVDAIIVGAD 247 (356)
T ss_pred cchHHHHHHHHHH-cCCeEEEEECCCCchhhHHHHHHHHHHHCCCCEEEEehhH--HHHHhhhcCCCEEEECcc
Confidence 4888885554433 2332 3445666654322 345679999999998887 543222225788887665
No 389
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.07 E-value=64 Score=26.56 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=41.6
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcC----C----
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMD----G---- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~----~---- 111 (218)
.-+++|=+|.+.| +|..+... +...+.+++. ...++.. ....+.+...+-.+.++..|..+.+.+. .
T Consensus 4 ~~~~~lItG~~g~-iG~~~a~~--l~~~G~~vi~-~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 4 KDKVIVITGGAQG-LGRAMAEY--LAQKGAKLAL-IDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHH--HHHCCCEEEE-EeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3567888887666 67776533 3333556444 4454433 2233344444555677777762222222 1
Q ss_pred CCCccEEEEeC
Q 027826 112 LVDIDFLVVDS 122 (218)
Q Consensus 112 l~~fDfVFIDa 122 (218)
+.++|.||-=+
T Consensus 80 ~~~id~vi~~a 90 (253)
T PRK08217 80 FGQLNGLINNA 90 (253)
T ss_pred cCCCCEEEECC
Confidence 23678887544
No 390
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=53.97 E-value=58 Score=29.54 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=42.2
Q ss_pred CeEEEeCcCcchHHHHHH-HHHhcCC-CCcEEEEEEcCCccHH--HHHHHHhhCCCceEEEEcCCCchh-hcCCCCCccE
Q 027826 43 RLIVETWSHGGATATSVG-LAVASRH-TGGRHVCLVPDERSRS--EYVHALGEAGFSPQVITGEADDEE-LMDGLVDIDF 117 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaig-lA~a~~~-~~G~vitt~e~~~~~~--~~a~~~~~agl~i~~i~GdA~~~e-~L~~l~~fDf 117 (218)
..||=.| |++|..+ |..|... ..=+ |.+.|..|... ..++.+.+.|+.+.++.-.+ .- +++ ..|+
T Consensus 122 ~~ILT~~----~S~tv~~~l~~A~~~~k~~~-V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Dsa--v~~~m~---~vd~ 191 (310)
T PRK08535 122 DVIMTHC----NSSAALSVIKTAHEQGKDIE-VIATETRPRNQGHITAKELAEYGIPVTLIVDSA--VRYFMK---DVDK 191 (310)
T ss_pred CEEEEeC----CcHHHHHHHHHHHHCCCeEE-EEEecCCchhhHHHHHHHHHHCCCCEEEEehhH--HHHHHH---hCCE
Confidence 4577654 3556666 3333322 1224 44556666543 34567779999999988777 44 333 4777
Q ss_pred EEEeCC
Q 027826 118 LVVDSR 123 (218)
Q Consensus 118 VFIDa~ 123 (218)
||+-|+
T Consensus 192 VivGAd 197 (310)
T PRK08535 192 VVVGAD 197 (310)
T ss_pred EEECcc
Confidence 777555
No 391
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=53.93 E-value=42 Score=29.38 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=40.0
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCC--ceEEEEcCCCchhhcCC-CCCccEEE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGF--SPQVITGEADDEELMDG-LVDIDFLV 119 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl--~i~~i~GdA~~~e~L~~-l~~fDfVF 119 (218)
++||=.| ++|+||+.+. ..+.+.|-+++.+.............+...+. .++++.+|.++.+.+.. +..+|.||
T Consensus 6 ~~vlVTG-atG~iG~~l~--~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 82 (322)
T PLN02986 6 KLVCVTG-ASGYIASWIV--KLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF 82 (322)
T ss_pred CEEEEEC-CCcHHHHHHH--HHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence 4566544 4677888864 33333344644444332222222222222232 28889999844344443 24678887
Q ss_pred EeCC
Q 027826 120 VDSR 123 (218)
Q Consensus 120 IDa~ 123 (218)
.=|.
T Consensus 83 h~A~ 86 (322)
T PLN02986 83 HTAS 86 (322)
T ss_pred EeCC
Confidence 6664
No 392
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=53.63 E-value=56 Score=31.25 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=55.0
Q ss_pred CCCeEEEeC-cCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH---HH-hhCCCceEEEE--cCCCchhhc----
Q 027826 41 DARLIVETW-SHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH---AL-GEAGFSPQVIT--GEADDEELM---- 109 (218)
Q Consensus 41 ~ak~ILEiG-t~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~---~~-~~agl~i~~i~--GdA~~~e~L---- 109 (218)
+|..|+=+| +|+|=..++..||..+...+-+ +..+..|..+..+.. .+ .+.|+.+.... .++ .+.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~k-V~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~--~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLK-VGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDA--VEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCe-EEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCH--HHHHHHHH
Confidence 355676676 5566522233488777653334 555555554443322 23 25565532211 232 4333
Q ss_pred CCCCCccEEEEeCCccCcH--HHHHHh----c-CCCCCeEEEEeCCC
Q 027826 110 DGLVDIDFLVVDSRRKDFA--RVLRLA----N-LSSRGAVLVCKNAY 149 (218)
Q Consensus 110 ~~l~~fDfVFIDa~K~~Y~--~~~~~~----~-L~~~GgvIV~DNvl 149 (218)
..+..+|+|+||..-..+. +.++.+ . ..|..-++|+|-..
T Consensus 171 ~~~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~ 217 (437)
T PRK00771 171 EKFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATI 217 (437)
T ss_pred HHhhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccc
Confidence 3345679999999965553 344333 2 23546677777544
No 393
>PRK06197 short chain dehydrogenase; Provisional
Probab=53.50 E-value=46 Score=29.00 Aligned_cols=79 Identities=14% Similarity=0.134 Sum_probs=44.2
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhh-C-CCceEEEEcCCCchhhcCC------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGE-A-GFSPQVITGEADDEELMDG------ 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~-a-gl~i~~i~GdA~~~e~L~~------ 111 (218)
.-|.||=.|...| ||.+++ +.+...|.+++.+ ..+++... ..+.+.. . +..++++..|..+.+.+..
T Consensus 15 ~~k~vlItGas~g-IG~~~a--~~l~~~G~~vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 15 SGRVAVVTGANTG-LGYETA--AALAAKGAHVVLA-VRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred CCCEEEEcCCCCc-HHHHHH--HHHHHCCCEEEEE-eCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 3478898888777 688865 3333335575544 34443322 2333432 2 2337778888743333322
Q ss_pred --CCCccEEEEeCC
Q 027826 112 --LVDIDFLVVDSR 123 (218)
Q Consensus 112 --l~~fDfVFIDa~ 123 (218)
+..+|.++.-|.
T Consensus 91 ~~~~~iD~li~nAg 104 (306)
T PRK06197 91 AAYPRIDLLINNAG 104 (306)
T ss_pred hhCCCCCEEEECCc
Confidence 236899887764
No 394
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=53.49 E-value=58 Score=27.31 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=44.2
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
.-++||=.|...| ||+.+. ..+...|-++ +....+++..+ ..+.+...+..+.++.+|.++.+.+..
T Consensus 11 ~~k~ilItGa~g~-IG~~la--~~l~~~G~~V-~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 11 SGKTALVTGGSRG-LGLQIA--EALGEAGARV-VLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred CCCEEEEECCCch-HHHHHH--HHHHHcCCEE-EEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3477888886555 788865 3332224564 44445543322 223344455557788899855444422
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
+.++|.|+.=|.
T Consensus 87 ~~~id~vi~~ag 98 (259)
T PRK08213 87 FGHVDILVNNAG 98 (259)
T ss_pred hCCCCEEEECCC
Confidence 236888876553
No 395
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=53.45 E-value=43 Score=30.81 Aligned_cols=81 Identities=12% Similarity=0.090 Sum_probs=51.6
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcCC-CchhhcCCCC--CccEE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEA-DDEELMDGLV--DIDFL 118 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~GdA-~~~e~L~~l~--~fDfV 118 (218)
...|. ||+.+ -|-+=.+...+++ .|+ ++.++.|+...+.++.. ...+-.+.+++++- ++.+.++.++ .+|-|
T Consensus 25 giyiD-~TlG~-GGHS~~iL~~l~~-~~~-li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~vDGi 100 (314)
T COG0275 25 GIYID-GTLGA-GGHSRAILEKLPD-LGR-LIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKVDGI 100 (314)
T ss_pred cEEEE-ecCCC-cHhHHHHHHhCCC-CCe-EEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCceeEE
Confidence 35566 44433 2455556666654 678 55568888877777654 46664589999877 2233445443 89999
Q ss_pred EEeCCccCc
Q 027826 119 VVDSRRKDF 127 (218)
Q Consensus 119 FIDa~K~~Y 127 (218)
++|---+.+
T Consensus 101 L~DLGVSS~ 109 (314)
T COG0275 101 LLDLGVSSP 109 (314)
T ss_pred EEeccCCcc
Confidence 999765544
No 396
>PRK05855 short chain dehydrogenase; Validated
Probab=53.25 E-value=51 Score=30.94 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=47.0
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcCC-------
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMDG------- 111 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~~------- 111 (218)
.+.+++|=+|.+.| ||.++. ..+...|-+++.+ ..+++. .+.++.+...|..+.++..|.++.+.+.+
T Consensus 313 ~~~~~~lv~G~s~g-iG~~~a--~~l~~~G~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 388 (582)
T PRK05855 313 FSGKLVVVTGAGSG-IGRETA--LAFAREGAEVVAS-DIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRA 388 (582)
T ss_pred CCCCEEEEECCcCH-HHHHHH--HHHHHCCCEEEEE-eCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45577888888777 688865 3333335565544 444433 33344455556567788888744443332
Q ss_pred -CCCccEEEEeCC
Q 027826 112 -LVDIDFLVVDSR 123 (218)
Q Consensus 112 -l~~fDfVFIDa~ 123 (218)
+..+|.++.=|.
T Consensus 389 ~~g~id~lv~~Ag 401 (582)
T PRK05855 389 EHGVPDIVVNNAG 401 (582)
T ss_pred hcCCCcEEEECCc
Confidence 236898887664
No 397
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=53.05 E-value=1.7e+02 Score=26.59 Aligned_cols=118 Identities=10% Similarity=0.112 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhcCC--CeEEEeCcCcchHHHHH-HHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCC
Q 027826 27 SGVAELVSAMAAGWDA--RLIVETWSHGGATATSV-GLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEA 103 (218)
Q Consensus 27 p~~g~fL~~L~~~~~a--k~ILEiGt~~GyiGsai-glA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA 103 (218)
+.-.++-..|++..+. ..|+= +.+|+ .++ ++..++..++.++++.....+.+.........+|.. ++.-+.
T Consensus 54 ~~~~~Le~~lA~~~g~~~e~ilv--~~gg~--~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~~~~~l~ga~--~~~~~~ 127 (346)
T TIGR03576 54 IFEEKVQELGREHLGGPEEKILV--FNRTS--SAILATILALEPPGRKVVHYLPEKPAHPSIPRSCKLAGAE--YFESDE 127 (346)
T ss_pred HHHHHHHHHHHHHcCCCcceEEE--ECCHH--HHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHHHcCCE--EeccCC
Confidence 4455677777777776 88885 33455 444 344555555666544333334444444434455654 221122
Q ss_pred CchhhcCCCCCccEEEEeCCcc---Cc-HHHHHH-hcCC-CCCeEEEEeCCCCCC
Q 027826 104 DDEELMDGLVDIDFLVVDSRRK---DF-ARVLRL-ANLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 104 ~~~e~L~~l~~fDfVFIDa~K~---~Y-~~~~~~-~~L~-~~GgvIV~DNvl~~G 152 (218)
++.|...+.-.+|+++...- -| .+-++. +.+. +.|.++++|++...|
T Consensus 128 --l~~l~~~~~~~lIiitg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~ 180 (346)
T TIGR03576 128 --LSELKKIDGTSLVVITGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGAR 180 (346)
T ss_pred --HHHHhhCcCceEEEEECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence 33344333457889876411 11 123333 3443 458999999997554
No 398
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=52.96 E-value=51 Score=27.46 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=42.3
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCc-eEEEEcCCCch--h-------
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFS-PQVITGEADDE--E------- 107 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~-i~~i~GdA~~~--e------- 107 (218)
....++||=.|...| +|.++... +.+.+.+++.+ ..+++. ....+.+.+.+-. +.++.+|.++. +
T Consensus 9 ~~~~k~vlItG~~g~-iG~~la~~--l~~~G~~Vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 84 (247)
T PRK08945 9 LLKDRIILVTGAGDG-IGREAALT--YARHGATVILL-GRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLAD 84 (247)
T ss_pred ccCCCEEEEeCCCch-HHHHHHHH--HHHCCCcEEEE-eCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHH
Confidence 346678888887655 68876532 22335575544 454432 2233344444433 66777776211 1
Q ss_pred -hcCCCCCccEEEEeC
Q 027826 108 -LMDGLVDIDFLVVDS 122 (218)
Q Consensus 108 -~L~~l~~fDfVFIDa 122 (218)
+.+.+.++|.|+.=|
T Consensus 85 ~~~~~~~~id~vi~~A 100 (247)
T PRK08945 85 TIEEQFGRLDGVLHNA 100 (247)
T ss_pred HHHHHhCCCCEEEECC
Confidence 112234789887654
No 399
>PLN00198 anthocyanidin reductase; Provisional
Probab=52.95 E-value=45 Score=29.46 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=39.7
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchhhcCC-CCCccEEEE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEELMDG-LVDIDFLVV 120 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e~L~~-l~~fDfVFI 120 (218)
++||=.|. +|+||+.+ +..+...+-+++.+...+................ ++++.||..+.+.+.. ++.+|.||-
T Consensus 10 ~~vlItG~-~GfIG~~l--~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 86 (338)
T PLN00198 10 KTACVIGG-TGFLASLL--IKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFH 86 (338)
T ss_pred CeEEEECC-chHHHHHH--HHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence 56776554 58888885 4444433456433332222221111111111222 7889999833333333 347898886
Q ss_pred eCC
Q 027826 121 DSR 123 (218)
Q Consensus 121 Da~ 123 (218)
=|.
T Consensus 87 ~A~ 89 (338)
T PLN00198 87 VAT 89 (338)
T ss_pred eCC
Confidence 664
No 400
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=52.90 E-value=53 Score=30.92 Aligned_cols=43 Identities=12% Similarity=0.056 Sum_probs=27.7
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCC------CCcEEEEEEcCCccHHHHHHH
Q 027826 43 RLIVETWSHGGATATSVGLAVASRH------TGGRHVCLVPDERSRSEYVHA 88 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~------~~G~vitt~e~~~~~~~~a~~ 88 (218)
-.++|||.+.|+..+-+ .+.+.. ..-+ +.++|.+++..+..+.
T Consensus 79 ~~lvEiGaG~G~l~~Di--L~~l~~L~P~~~~~~~-~~iiE~s~~L~~~Qk~ 127 (370)
T COG1565 79 LKLVEIGAGRGTLASDI--LRTLRRLYPELYEALS-YYIIEPSPELRARQKE 127 (370)
T ss_pred ceEEEeCCCcChHHHHH--HHHHHHhCHHHHhcce-EEEEecCHHHHHHHHH
Confidence 58999999999954443 222211 1235 7788888887665543
No 401
>PRK06138 short chain dehydrogenase; Provisional
Probab=52.87 E-value=61 Score=26.84 Aligned_cols=78 Identities=19% Similarity=0.242 Sum_probs=43.6
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
+-|.+|=.|++.| +|+.+. ..+.+.|.+++.+ ..+++... ....+. .+..+.++.+|.++.+.+.+
T Consensus 4 ~~k~~lItG~sg~-iG~~la--~~l~~~G~~v~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 4 AGRVAIVTGAGSG-IGRATA--KLFAREGARVVVA-DRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred CCcEEEEeCCCch-HHHHHH--HHHHHCCCeEEEe-cCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3478888888766 688754 3333334564444 44443322 222222 34447888888843333322
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
+.++|.|+.-+.
T Consensus 79 ~~~id~vi~~ag 90 (252)
T PRK06138 79 WGRLDVLVNNAG 90 (252)
T ss_pred cCCCCEEEECCC
Confidence 347899888665
No 402
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=52.84 E-value=56 Score=27.32 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=45.6
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcC--------
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMD-------- 110 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~-------- 110 (218)
..-|.+|=.|.+.| ||.++.... ...|.+++.+ ..+++. ......+...+..+.++..|..+.+.+.
T Consensus 7 l~~k~~lItGas~g-iG~~ia~~L--~~~G~~vvl~-~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (254)
T PRK08085 7 LAGKNILITGSAQG-IGFLLATGL--AEYGAEIIIN-DITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEK 82 (254)
T ss_pred CCCCEEEEECCCCh-HHHHHHHHH--HHcCCEEEEE-cCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 35678999998888 688865333 2335565544 444433 2233444455545667777773333222
Q ss_pred CCCCccEEEEeCC
Q 027826 111 GLVDIDFLVVDSR 123 (218)
Q Consensus 111 ~l~~fDfVFIDa~ 123 (218)
++.++|.++.=+.
T Consensus 83 ~~~~id~vi~~ag 95 (254)
T PRK08085 83 DIGPIDVLINNAG 95 (254)
T ss_pred hcCCCCEEEECCC
Confidence 2346888887664
No 403
>PHA02518 ParA-like protein; Provisional
Probab=52.54 E-value=24 Score=28.78 Aligned_cols=72 Identities=24% Similarity=0.259 Sum_probs=34.4
Q ss_pred CcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh--hCCCc-eEEEE-cCCCchhhcCCCC-CccEEEEeCCcc
Q 027826 51 HGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG--EAGFS-PQVIT-GEADDEELMDGLV-DIDFLVVDSRRK 125 (218)
Q Consensus 51 ~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~--~agl~-i~~i~-GdA~~~e~L~~l~-~fDfVFIDa~K~ 125 (218)
|+|=..+++.||.++...|-+ |..++.|+... ....+. ..+.. +.... ++. +.+.|..+. .||+|+||+...
T Consensus 11 GvGKTT~a~~la~~la~~g~~-vlliD~D~q~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~d~viiD~p~~ 87 (211)
T PHA02518 11 GAGKTTVATNLASWLHADGHK-VLLVDLDPQGS-STDWAEAREEGEPLIPVVRMGKS-IRADLPKVASGYDYVVVDGAPQ 87 (211)
T ss_pred CCCHHHHHHHHHHHHHhCCCe-EEEEeCCCCCC-hHHHHHhcccCCCCCchhhccHH-HHHHHHHHhccCCEEEEeCCCC
Confidence 345422333477766553445 66667777432 222111 11111 22111 111 133444443 899999999865
No 404
>PRK10867 signal recognition particle protein; Provisional
Probab=52.45 E-value=51 Score=31.52 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=53.3
Q ss_pred CCeEEEeC-cCcchHHHHHH--HHHhcCCC-CcEEEEEEcCCccHHHHHHHH----hhCCCceEEE--EcCCCchhhcCC
Q 027826 42 ARLIVETW-SHGGATATSVG--LAVASRHT-GGRHVCLVPDERSRSEYVHAL----GEAGFSPQVI--TGEADDEELMDG 111 (218)
Q Consensus 42 ak~ILEiG-t~~GyiGsaig--lA~a~~~~-~G~vitt~e~~~~~~~~a~~~----~~agl~i~~i--~GdA~~~e~L~~ 111 (218)
|..|+=+| +|+|= |++. ||..+... +-+ |..+..|..+..+.+.+ .+.|+.+... ..++ .++...
T Consensus 100 p~vI~~vG~~GsGK--TTtaakLA~~l~~~~G~k-V~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp--~~i~~~ 174 (433)
T PRK10867 100 PTVIMMVGLQGAGK--TTTAGKLAKYLKKKKKKK-VLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDP--VDIAKA 174 (433)
T ss_pred CEEEEEECCCCCcH--HHHHHHHHHHHHHhcCCc-EEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCH--HHHHHH
Confidence 45566666 34554 4433 77766554 334 44445555554443333 3566552221 1233 555432
Q ss_pred ------CCCccEEEEeCCccCc--HHHHHHh----c-CCCCCeEEEEeCC
Q 027826 112 ------LVDIDFLVVDSRRKDF--ARVLRLA----N-LSSRGAVLVCKNA 148 (218)
Q Consensus 112 ------l~~fDfVFIDa~K~~Y--~~~~~~~----~-L~~~GgvIV~DNv 148 (218)
...||+|+||..-... ....+.+ . +.|..-++|+|.+
T Consensus 175 a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~ 224 (433)
T PRK10867 175 ALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAM 224 (433)
T ss_pred HHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecc
Confidence 1379999999986443 2344333 3 3355667777754
No 405
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=52.29 E-value=60 Score=27.45 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=44.9
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHH-HHHHHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRS-EYVHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~-~~a~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
.-|++|=.|.+.| +|.++.... .+.+.+++.. ..+++.. .....+...|-.+.++..|.+..+.+.+
T Consensus 9 ~~k~~lItGa~~~-iG~~ia~~l--~~~G~~vv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 9 KGKIALITGASYG-IGFAIAKAY--AKAGATIVFN-DINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHH--HHCCCeEEEE-eCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3477888888877 677765332 2335675554 4444332 2333444555457777787743333322
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
+.++|.++.-|.
T Consensus 85 ~~~id~li~~ag 96 (265)
T PRK07097 85 VGVIDILVNNAG 96 (265)
T ss_pred CCCCCEEEECCC
Confidence 346888876654
No 406
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=52.21 E-value=61 Score=26.80 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=42.6
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHH-HHHHhhCCCceEEEEcCCCchhhcCC--------CC
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY-VHALGEAGFSPQVITGEADDEELMDG--------LV 113 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~-a~~~~~agl~i~~i~GdA~~~e~L~~--------l~ 113 (218)
++||=.|.+.| +|+.+. ..+...+-+++. ...+++.... .+.+...+-.++++.+|..+.+.+.. +.
T Consensus 4 ~~ilItGas~~-iG~~la--~~l~~~g~~v~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 4 KTAIVTGGGGG-IGGATC--RRFAEEGAKVAV-FDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CEEEEeCCCCh-HHHHHH--HHHHHCCCEEEE-ecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56777777655 677754 333333446444 4454433222 23344444457888888843333332 23
Q ss_pred CccEEEEeCC
Q 027826 114 DIDFLVVDSR 123 (218)
Q Consensus 114 ~fDfVFIDa~ 123 (218)
+.|.++.-+.
T Consensus 80 ~~d~vi~~ag 89 (250)
T TIGR03206 80 PVDVLVNNAG 89 (250)
T ss_pred CCCEEEECCC
Confidence 6898887773
No 407
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=52.21 E-value=60 Score=31.08 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=53.3
Q ss_pred CCeEEEeC-cCcchHHHHHH--HHHhcCCCCcEEEEEEcCCccHHHHHHHH---h-hCCCceEEEE--cCCCchh----h
Q 027826 42 ARLIVETW-SHGGATATSVG--LAVASRHTGGRHVCLVPDERSRSEYVHAL---G-EAGFSPQVIT--GEADDEE----L 108 (218)
Q Consensus 42 ak~ILEiG-t~~GyiGsaig--lA~a~~~~~G~vitt~e~~~~~~~~a~~~---~-~agl~i~~i~--GdA~~~e----~ 108 (218)
|..|+=+| +|+|= ||.. ||..+...+-+ |..+..|+.+..+...+ . +.++.+.... .|+ .+ .
T Consensus 100 ~~vi~lvG~~GvGK--TTtaaKLA~~l~~~G~k-V~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp--~~i~~~~ 174 (429)
T TIGR01425 100 QNVIMFVGLQGSGK--TTTCTKLAYYYQRKGFK-PCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDP--VKIASEG 174 (429)
T ss_pred CeEEEEECCCCCCH--HHHHHHHHHHHHHCCCC-EEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCH--HHHHHHH
Confidence 45667777 66776 4433 77776543335 55555666554443333 2 4454422222 232 33 2
Q ss_pred cCCC--CCccEEEEeCCccCcH--HHHHHh----cCC-CCCeEEEEeCC
Q 027826 109 MDGL--VDIDFLVVDSRRKDFA--RVLRLA----NLS-SRGAVLVCKNA 148 (218)
Q Consensus 109 L~~l--~~fDfVFIDa~K~~Y~--~~~~~~----~L~-~~GgvIV~DNv 148 (218)
+..+ ..||+||||..-.... +.++.+ ... |.--++|.|-+
T Consensus 175 l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~ 223 (429)
T TIGR01425 175 VEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGS 223 (429)
T ss_pred HHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccc
Confidence 3333 3799999999854433 344444 222 43456666643
No 408
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=52.17 E-value=68 Score=27.08 Aligned_cols=80 Identities=10% Similarity=0.144 Sum_probs=46.1
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHh-hCCCceEEEEcCCCchhhcCC------
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALG-EAGFSPQVITGEADDEELMDG------ 111 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~-~agl~i~~i~GdA~~~e~L~~------ 111 (218)
+..|.||=.|.+.| ||.++. ..+.+.|.+++.+...+++. ...++.+. ..|..+.++..|.++.+.+.+
T Consensus 6 l~~k~vlItGas~g-IG~~ia--~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (260)
T PRK08416 6 MKGKTLVISGGTRG-IGKAIV--YEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKID 82 (260)
T ss_pred cCCCEEEEeCCCch-HHHHHH--HHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 45688998898888 688865 33333356754443333332 22334443 345557778888743333322
Q ss_pred --CCCccEEEEeC
Q 027826 112 --LVDIDFLVVDS 122 (218)
Q Consensus 112 --l~~fDfVFIDa 122 (218)
+..+|.++.-|
T Consensus 83 ~~~g~id~lv~nA 95 (260)
T PRK08416 83 EDFDRVDFFISNA 95 (260)
T ss_pred HhcCCccEEEECc
Confidence 34689988876
No 409
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=52.13 E-value=27 Score=25.01 Aligned_cols=82 Identities=15% Similarity=0.279 Sum_probs=47.5
Q ss_pred CcchHHHHHHHHHhcCCCC---cEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCCCccEEEEeCCccCc
Q 027826 51 HGGATATSVGLAVASRHTG---GRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDFLVVDSRRKDF 127 (218)
Q Consensus 51 ~~GyiGsaiglA~a~~~~~---G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~~fDfVFIDa~K~~Y 127 (218)
|+|-+|++|+ .++...+ .+++.....++++.. +...+.+ +++...+. .+.++ .-|+||+=....++
T Consensus 6 G~G~mg~al~--~~l~~~g~~~~~v~~~~~r~~~~~~--~~~~~~~--~~~~~~~~--~~~~~---~advvilav~p~~~ 74 (96)
T PF03807_consen 6 GAGNMGSALA--RGLLASGIKPHEVIIVSSRSPEKAA--ELAKEYG--VQATADDN--EEAAQ---EADVVILAVKPQQL 74 (96)
T ss_dssp STSHHHHHHH--HHHHHTTS-GGEEEEEEESSHHHHH--HHHHHCT--TEEESEEH--HHHHH---HTSEEEE-S-GGGH
T ss_pred CCCHHHHHHH--HHHHHCCCCceeEEeeccCcHHHHH--HHHHhhc--cccccCCh--HHhhc---cCCEEEEEECHHHH
Confidence 4466778864 2222223 564423366664432 2223555 34554455 56565 78999999999999
Q ss_pred HHHHHHh-cCCCCCeEEE
Q 027826 128 ARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 128 ~~~~~~~-~L~~~GgvIV 144 (218)
.+.++.+ .+.+ +.++|
T Consensus 75 ~~v~~~i~~~~~-~~~vi 91 (96)
T PF03807_consen 75 PEVLSEIPHLLK-GKLVI 91 (96)
T ss_dssp HHHHHHHHHHHT-TSEEE
T ss_pred HHHHHHHhhccC-CCEEE
Confidence 9999988 4445 66665
No 410
>PRK06949 short chain dehydrogenase; Provisional
Probab=51.95 E-value=66 Score=26.80 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=43.2
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHH-HHHHHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRS-EYVHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~-~~a~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
.-++||=.|...| ||.++. ..+...+.+++.+ ..+++.. .....+...+..+.++.+|.+..+.+..
T Consensus 8 ~~k~ilItGasg~-IG~~~a--~~l~~~G~~Vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (258)
T PRK06949 8 EGKVALVTGASSG-LGARFA--QVLAQAGAKVVLA-SRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETE 83 (258)
T ss_pred CCCEEEEECCCcH-HHHHHH--HHHHHCCCEEEEE-eCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 3478888886655 688865 3332335564444 4444432 2333344444447788888833333322
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
..++|.++.-+.
T Consensus 84 ~~~~d~li~~ag 95 (258)
T PRK06949 84 AGTIDILVNNSG 95 (258)
T ss_pred cCCCCEEEECCC
Confidence 236788777554
No 411
>PRK09242 tropinone reductase; Provisional
Probab=51.89 E-value=65 Score=27.00 Aligned_cols=78 Identities=13% Similarity=0.130 Sum_probs=42.7
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhC--CCceEEEEcCCCchhhc--------C
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEA--GFSPQVITGEADDEELM--------D 110 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~a--gl~i~~i~GdA~~~e~L--------~ 110 (218)
=|.+|=.|.+.| ||..+... +...|.+++.+ ..+++. .+....+... +..+.++..|....+.+ .
T Consensus 9 ~k~~lItGa~~g-IG~~~a~~--l~~~G~~v~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (257)
T PRK09242 9 GQTALITGASKG-IGLAIARE--FLGLGADVLIV-ARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVED 84 (257)
T ss_pred CCEEEEeCCCch-HHHHHHHH--HHHcCCEEEEE-eCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 367888888776 68886533 32335564443 444433 2233344332 33477778887332222 2
Q ss_pred CCCCccEEEEeCC
Q 027826 111 GLVDIDFLVVDSR 123 (218)
Q Consensus 111 ~l~~fDfVFIDa~ 123 (218)
.+.++|.++.=+.
T Consensus 85 ~~g~id~li~~ag 97 (257)
T PRK09242 85 HWDGLHILVNNAG 97 (257)
T ss_pred HcCCCCEEEECCC
Confidence 2347899877764
No 412
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=51.82 E-value=73 Score=26.38 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=43.5
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHH-HHHHHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRS-EYVHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~-~~a~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
.-++||=.|.+ |++|+.+. ..+...+-+++.+ ..+++.. ...+.+...+..++++.+|..+.+.+..
T Consensus 3 ~~~~vlItG~s-g~iG~~la--~~l~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (258)
T PRK12429 3 KGKVALVTGAA-SGIGLEIA--LALAKEGAKVVIA-DLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVET 78 (258)
T ss_pred CCCEEEEECCC-chHHHHHH--HHHHHCCCeEEEE-eCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 34778877765 44788765 3333335564444 4444432 2333444445457788888744333322
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
+.++|.|+.-|.
T Consensus 79 ~~~~d~vi~~a~ 90 (258)
T PRK12429 79 FGGVDILVNNAG 90 (258)
T ss_pred cCCCCEEEECCC
Confidence 236898887553
No 413
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=51.76 E-value=46 Score=29.85 Aligned_cols=78 Identities=9% Similarity=0.016 Sum_probs=40.2
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCcc-HHH-HHHHHhh---CCCc-eEEEEcCCCchhhcCC-CCC
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERS-RSE-YVHALGE---AGFS-PQVITGEADDEELMDG-LVD 114 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~-~~~-~a~~~~~---agl~-i~~i~GdA~~~e~L~~-l~~ 114 (218)
.++||=.| ++||+|+.+. ..+...+-+|+.. +.... ... ....... .... ++++.||..+.+.+.. ++.
T Consensus 15 ~~~vlVtG-atGfiG~~lv--~~L~~~g~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~ 90 (348)
T PRK15181 15 PKRWLITG-VAGFIGSGLL--EELLFLNQTVIGL-DNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKN 90 (348)
T ss_pred CCEEEEEC-CccHHHHHHH--HHHHHCCCEEEEE-eCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhC
Confidence 36787754 4799999865 3333323354443 33322 111 1111111 1122 7889999833333433 347
Q ss_pred ccEEEEeCC
Q 027826 115 IDFLVVDSR 123 (218)
Q Consensus 115 fDfVFIDa~ 123 (218)
+|.||-=|.
T Consensus 91 ~d~ViHlAa 99 (348)
T PRK15181 91 VDYVLHQAA 99 (348)
T ss_pred CCEEEECcc
Confidence 898876664
No 414
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=51.50 E-value=42 Score=29.96 Aligned_cols=77 Identities=10% Similarity=0.019 Sum_probs=39.2
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEcCCCchhhcCC-CCCccEE
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITGEADDEELMDG-LVDIDFL 118 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~GdA~~~e~L~~-l~~fDfV 118 (218)
.-++||=.|. +|+||+.+ ++.+...|-+|+.+ ..++.... ....+. .+-.++++.+|.+..+.+.+ +..+|.|
T Consensus 9 ~~~~vLVtG~-~GfIG~~l--~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 83 (353)
T PLN02896 9 ATGTYCVTGA-TGYIGSWL--VKLLLQRGYTVHAT-LRDPAKSLHLLSKWK-EGDRLRLFRADLQEEGSFDEAVKGCDGV 83 (353)
T ss_pred CCCEEEEECC-CcHHHHHH--HHHHHHCCCEEEEE-eCChHHHHHHHHhhc-cCCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence 3457787664 68888885 44444334565544 34432211 111121 12237888888733333332 2356766
Q ss_pred EEeC
Q 027826 119 VVDS 122 (218)
Q Consensus 119 FIDa 122 (218)
+-=|
T Consensus 84 ih~A 87 (353)
T PLN02896 84 FHVA 87 (353)
T ss_pred EECC
Confidence 6544
No 415
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=51.45 E-value=29 Score=34.27 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=45.9
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCC--CccEEEEe
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLV--DIDFLVVD 121 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~--~fDfVFID 121 (218)
+|+= ||+|-.|.. +++.+...+-. ++.+|.|+++.+.+ ++.| ..++.|||+..++|.+.+ ..|.+++=
T Consensus 402 ~vII--~G~Gr~G~~--va~~L~~~g~~-vvvID~d~~~v~~~---~~~g--~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 402 QVII--VGFGRFGQV--IGRLLMANKMR-ITVLERDISAVNLM---RKYG--YKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred CEEE--ecCchHHHH--HHHHHHhCCCC-EEEEECCHHHHHHH---HhCC--CeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 3444 445665565 45544432334 67778888765443 3455 578999998888998764 88888776
Q ss_pred CCc
Q 027826 122 SRR 124 (218)
Q Consensus 122 a~K 124 (218)
-+.
T Consensus 472 ~~d 474 (601)
T PRK03659 472 CNE 474 (601)
T ss_pred eCC
Confidence 553
No 416
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=51.28 E-value=1.4e+02 Score=26.66 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=45.3
Q ss_pred CCeEEEeC-cCcchHHHHHH--HHHhcCCCCcEEEEEEcCCccHHHHHHHHh----hCCCceEEEEcCCCchhhcCCC--
Q 027826 42 ARLIVETW-SHGGATATSVG--LAVASRHTGGRHVCLVPDERSRSEYVHALG----EAGFSPQVITGEADDEELMDGL-- 112 (218)
Q Consensus 42 ak~ILEiG-t~~GyiGsaig--lA~a~~~~~G~vitt~e~~~~~~~~a~~~~----~agl~i~~i~GdA~~~e~L~~l-- 112 (218)
+..|+=+| ++.|= |++. ++..+...+.+ +..+..+..+......+. ..|+.+.....+.++.+.|..+
T Consensus 75 ~~~i~~~G~~g~GK--Ttl~~~l~~~l~~~~~~-v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGK--TTTLAKMAWQFHGKKKT-VGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCEEEEECCCCCcH--HHHHHHHHHHHHHcCCe-EEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 36777787 77776 6654 44444332334 444444454443433332 3454422211111112333333
Q ss_pred -CCccEEEEeCCccCc--HHHHHHh
Q 027826 113 -VDIDFLVVDSRRKDF--ARVLRLA 134 (218)
Q Consensus 113 -~~fDfVFIDa~K~~Y--~~~~~~~ 134 (218)
..+|+|+||..-..+ .+.++.+
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el 176 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEM 176 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHH
Confidence 379999999986664 3444443
No 417
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=51.25 E-value=1.2e+02 Score=27.24 Aligned_cols=123 Identities=15% Similarity=0.096 Sum_probs=62.1
Q ss_pred HHHHHHHHHH----hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc--eEEEEcC
Q 027826 29 VAELVSAMAA----GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS--PQVITGE 102 (218)
Q Consensus 29 ~g~fL~~L~~----~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~--i~~i~Gd 102 (218)
--.||..-++ ..|.+..|+||||.=..|..==.|.+..+ +.+||+ ++++|-....++.+...+-. ..++.+|
T Consensus 52 nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P-~aRVVY-VD~DPvv~ah~ralL~~~~~g~t~~v~aD 129 (267)
T PF04672_consen 52 NRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAP-DARVVY-VDNDPVVLAHARALLADNPRGRTAYVQAD 129 (267)
T ss_dssp HHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-T-T-EEEE-EESSHHHHHCCHHHHTT-TTSEEEEEE--
T ss_pred HHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCC-CceEEE-ECCCchHHHHHHhhhcCCCCccEEEEeCC
Confidence 3456655444 46899999999863221111117777654 789666 47888555555665322222 7889999
Q ss_pred C-CchhhcCC------C--C-CccEEEEeC-----CccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc
Q 027826 103 A-DDEELMDG------L--V-DIDFLVVDS-----RRKDFARVLRLA-NLSSRGAVLVCKNAYSRND 153 (218)
Q Consensus 103 A-~~~e~L~~------l--~-~fDfVFIDa-----~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~ 153 (218)
. ++.++|.. | + ++=++++.. +-++=...+..+ ..+++|+.++.-.....+.
T Consensus 130 ~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~ 196 (267)
T PF04672_consen 130 LRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGA 196 (267)
T ss_dssp TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS
T ss_pred CCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCC
Confidence 8 33346663 2 2 555666532 323445677776 6666799999988876553
No 418
>PLN02650 dihydroflavonol-4-reductase
Probab=51.21 E-value=30 Score=30.88 Aligned_cols=78 Identities=12% Similarity=0.015 Sum_probs=39.7
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCC--ceEEEEcCCCchhhcCC-CCCccE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGF--SPQVITGEADDEELMDG-LVDIDF 117 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl--~i~~i~GdA~~~e~L~~-l~~fDf 117 (218)
-++||=.| ++|+||+.+. ..+...+-+|+... .++......... ...+. .++++.||..+.+.+.. +..+|.
T Consensus 5 ~k~iLVTG-atGfIGs~l~--~~L~~~G~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ 80 (351)
T PLN02650 5 KETVCVTG-ASGFIGSWLV--MRLLERGYTVRATV-RDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTG 80 (351)
T ss_pred CCEEEEeC-CcHHHHHHHH--HHHHHCCCEEEEEE-cCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCE
Confidence 35666544 4688899865 44433345644433 333222221122 12232 27888898833334433 346788
Q ss_pred EEEeCC
Q 027826 118 LVVDSR 123 (218)
Q Consensus 118 VFIDa~ 123 (218)
||-=|.
T Consensus 81 ViH~A~ 86 (351)
T PLN02650 81 VFHVAT 86 (351)
T ss_pred EEEeCC
Confidence 876553
No 419
>PRK07890 short chain dehydrogenase; Provisional
Probab=51.10 E-value=71 Score=26.57 Aligned_cols=80 Identities=18% Similarity=0.247 Sum_probs=45.0
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHH-HHHHHHhhCCCceEEEEcCCCchhhcC--------C
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRS-EYVHALGEAGFSPQVITGEADDEELMD--------G 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~-~~a~~~~~agl~i~~i~GdA~~~e~L~--------~ 111 (218)
.-++||=.|.+.| ||.++.-..+ ..|.+++.+ ..+++.. ...+.+...+..+..+..|.++.+.+. .
T Consensus 4 ~~k~vlItGa~~~-IG~~la~~l~--~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 4 KGKVVVVSGVGPG-LGRTLAVRAA--RAGADVVLA-ARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred CCCEEEEECCCCc-HHHHHHHHHH--HcCCEEEEE-eCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 4578888887666 7888653333 335574444 4444332 222333444544677777774433332 2
Q ss_pred CCCccEEEEeCCc
Q 027826 112 LVDIDFLVVDSRR 124 (218)
Q Consensus 112 l~~fDfVFIDa~K 124 (218)
+..+|.++.-|..
T Consensus 80 ~g~~d~vi~~ag~ 92 (258)
T PRK07890 80 FGRVDALVNNAFR 92 (258)
T ss_pred cCCccEEEECCcc
Confidence 3468988887753
No 420
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=51.10 E-value=24 Score=33.16 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=44.2
Q ss_pred CCCeEEEeC-cCcchHHHHHH-HHHhcCC----CCcEEEEEEcCCccHHHHHHHHh----hCCCceEEEEcCCCchhhcC
Q 027826 41 DARLIVETW-SHGGATATSVG-LAVASRH----TGGRHVCLVPDERSRSEYVHALG----EAGFSPQVITGEADDEELMD 110 (218)
Q Consensus 41 ~ak~ILEiG-t~~GyiGsaig-lA~a~~~----~~G~vitt~e~~~~~~~~a~~~~----~agl~i~~i~GdA~~~e~L~ 110 (218)
+++.|+=+| ||+|= .|+++ ||..+.. .+.+ |..+..|..+..+...+. ..|+.+.......++.+.|.
T Consensus 173 ~~~vi~lvGptGvGK-TTT~aKLA~~~~~~~~~~g~~-V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGK-TTTIAKLAAIYGINSDDKSLN-IKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCH-HHHHHHHHHHHHhhhccCCCe-EEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHH
Confidence 356676676 45564 13333 7665431 2334 555556665544443342 35655433221111233455
Q ss_pred CCCCccEEEEeCCccCc
Q 027826 111 GLVDIDFLVVDSRRKDF 127 (218)
Q Consensus 111 ~l~~fDfVFIDa~K~~Y 127 (218)
.+..+|+|+||..-...
T Consensus 251 ~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSP 267 (388)
T ss_pred HhCCCCEEEEcCCCCCc
Confidence 56789999999874443
No 421
>PRK07791 short chain dehydrogenase; Provisional
Probab=51.02 E-value=74 Score=27.63 Aligned_cols=80 Identities=23% Similarity=0.230 Sum_probs=43.9
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCC---------ccHHHHHHHHhhCCCceEEEEcCCCchhhc-
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDE---------RSRSEYVHALGEAGFSPQVITGEADDEELM- 109 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~---------~~~~~~a~~~~~agl~i~~i~GdA~~~e~L- 109 (218)
+.-|.+|=.|.+.| ||.++....+ ..|.+++.+.... +.....++.+...|..+.++..|..+.+.+
T Consensus 4 l~~k~~lITGas~G-IG~aia~~la--~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~ 80 (286)
T PRK07791 4 LDGRVVIVTGAGGG-IGRAHALAFA--AEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAA 80 (286)
T ss_pred cCCCEEEEECCCch-HHHHHHHHHH--HCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHH
Confidence 45588999999888 6888653333 3356755432221 222233344444455566666676332222
Q ss_pred -------CCCCCccEEEEeC
Q 027826 110 -------DGLVDIDFLVVDS 122 (218)
Q Consensus 110 -------~~l~~fDfVFIDa 122 (218)
..+..+|.++.-|
T Consensus 81 ~~~~~~~~~~g~id~lv~nA 100 (286)
T PRK07791 81 NLVDAAVETFGGLDVLVNNA 100 (286)
T ss_pred HHHHHHHHhcCCCCEEEECC
Confidence 2234788887654
No 422
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=50.82 E-value=70 Score=28.88 Aligned_cols=72 Identities=14% Similarity=0.250 Sum_probs=42.6
Q ss_pred CCeEEEeCcCcchHHHHHH-HHHhcCC-CCcEEEEEEcCCccHH--HHHHHHhhCCCceEEEEcCCCchh-hcCCCCCcc
Q 027826 42 ARLIVETWSHGGATATSVG-LAVASRH-TGGRHVCLVPDERSRS--EYVHALGEAGFSPQVITGEADDEE-LMDGLVDID 116 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaig-lA~a~~~-~~G~vitt~e~~~~~~--~~a~~~~~agl~i~~i~GdA~~~e-~L~~l~~fD 116 (218)
-..||=.|- ++|..+ |..|... ..=+ |...|..|... ..++.+.++|+++.++.-.+ .- .++ ..|
T Consensus 116 g~~ILT~~~----S~tv~~~l~~a~~~~~~f~-V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Dsa--~~~~m~---~vd 185 (301)
T TIGR00511 116 GDVVMTHCN----SEAALSVIKTAFEQGKDIE-VIATETRPRKQGHITAKELRDYGIPVTLIVDSA--VRYFMK---EVD 185 (301)
T ss_pred CCEEEEECC----cHHHHHHHHHHHHcCCcEE-EEEecCCCcchHHHHHHHHHHCCCCEEEEehhH--HHHHHH---hCC
Confidence 346777543 456666 3333332 1234 44456666543 34667789999988887766 43 333 577
Q ss_pred EEEEeCC
Q 027826 117 FLVVDSR 123 (218)
Q Consensus 117 fVFIDa~ 123 (218)
+||+-|+
T Consensus 186 ~VivGad 192 (301)
T TIGR00511 186 HVVVGAD 192 (301)
T ss_pred EEEECcc
Confidence 7777655
No 423
>PRK07814 short chain dehydrogenase; Provisional
Probab=50.71 E-value=70 Score=27.08 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=43.7
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
.-+.+|=.|.+.| +|.++. +.+...|.+++.+ ..+++. .+..+.+...+-.+.++..|.+..+.+.+
T Consensus 9 ~~~~vlItGasgg-IG~~~a--~~l~~~G~~Vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 9 DDQVAVVTGAGRG-LGAAIA--LAFAEAGADVLIA-ARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCEEEEECCCCh-HHHHHH--HHHHHCCCEEEEE-eCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3467888887655 677754 3333335675444 444433 22333444444447777777743443322
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
+.++|.||-=|.
T Consensus 85 ~~~id~vi~~Ag 96 (263)
T PRK07814 85 FGRLDIVVNNVG 96 (263)
T ss_pred cCCCCEEEECCC
Confidence 347899887553
No 424
>PRK02362 ski2-like helicase; Provisional
Probab=50.36 E-value=1.6e+02 Score=29.62 Aligned_cols=118 Identities=21% Similarity=0.188 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHH---HHHhcCCCCcEEEEEEcCCccHHHHHHHHhhC---CCceE
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG---LAVASRHTGGRHVCLVPDERSRSEYVHALGEA---GFSPQ 97 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaig---lA~a~~~~~G~vitt~e~~~~~~~~a~~~~~a---gl~i~ 97 (218)
...|-|.+-+...+. .+---++-.-||+|= |.++ +..++. ++++.+.+.+...-..+..+.|.+. |+.+.
T Consensus 23 ~l~p~Q~~ai~~~~~-~g~nvlv~APTGSGK--Tlia~lail~~l~-~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~ 98 (737)
T PRK02362 23 ELYPPQAEAVEAGLL-DGKNLLAAIPTASGK--TLIAELAMLKAIA-RGGKALYIVPLRALASEKFEEFERFEELGVRVG 98 (737)
T ss_pred cCCHHHHHHHHHHHh-CCCcEEEECCCcchH--HHHHHHHHHHHHh-cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEE
Confidence 456777777765333 243556778899888 7766 333333 3677666655533223333445433 66677
Q ss_pred EEEcCCCchhhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 98 VITGEADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 98 ~i~GdA~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
...|+. ......+...|+|+.=. +.....++.- .....=++||+|.+=
T Consensus 99 ~~tGd~--~~~~~~l~~~~IiV~Tp--ek~~~llr~~~~~l~~v~lvViDE~H 147 (737)
T PRK02362 99 ISTGDY--DSRDEWLGDNDIIVATS--EKVDSLLRNGAPWLDDITCVVVDEVH 147 (737)
T ss_pred EEeCCc--CccccccCCCCEEEECH--HHHHHHHhcChhhhhhcCEEEEECcc
Confidence 788987 43333344667766322 1111111110 111223688888874
No 425
>PTZ00117 malate dehydrogenase; Provisional
Probab=49.98 E-value=2e+02 Score=26.00 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=56.1
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH--hh----CCCceEEEEcCCCchhhcCCCC
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL--GE----AGFSPQVITGEADDEELMDGLV 113 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~--~~----agl~i~~i~GdA~~~e~L~~l~ 113 (218)
.+.++|.=||. |.+|+++++..+...- .. +..++.++++.. ++.+ .. .+...++....- .+ .+.
T Consensus 3 ~~~~KI~IIGa--G~vG~~ia~~l~~~~~-~~-l~L~Di~~~~~~-g~~lDl~~~~~~~~~~~~i~~~~d--~~---~l~ 72 (319)
T PTZ00117 3 VKRKKISMIGA--GQIGSTVALLILQKNL-GD-VVLYDVIKGVPQ-GKALDLKHFSTLVGSNINILGTNN--YE---DIK 72 (319)
T ss_pred CCCcEEEEECC--CHHHHHHHHHHHHCCC-Ce-EEEEECCCccch-hHHHHHhhhccccCCCeEEEeCCC--HH---HhC
Confidence 35678999996 6677888866655432 46 555566665543 2222 21 122234442122 23 334
Q ss_pred CccEEEEeCCccCcH----------------HHHHHh-cCCCCCeEEEEeC
Q 027826 114 DIDFLVVDSRRKDFA----------------RVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 114 ~fDfVFIDa~K~~Y~----------------~~~~~~-~L~~~GgvIV~DN 147 (218)
.-|||++=+.....+ ++.+.+ +..|++=+|++-|
T Consensus 73 ~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 73 DSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 679999999766655 344444 5667444888877
No 426
>PRK05854 short chain dehydrogenase; Provisional
Probab=49.22 E-value=78 Score=27.96 Aligned_cols=79 Identities=11% Similarity=0.078 Sum_probs=45.0
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHH-HHHHHHh-hC-CCceEEEEcCCCchhhcCC------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRS-EYVHALG-EA-GFSPQVITGEADDEELMDG------ 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~-~~a~~~~-~a-gl~i~~i~GdA~~~e~L~~------ 111 (218)
.-|.+|=.|...| ||.+++ ..+...|.+|+.+ -.+++.. +..+.+. .. +..+.++..|..+.+.+..
T Consensus 13 ~gk~~lITGas~G-IG~~~a--~~La~~G~~Vil~-~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 13 SGKRAVVTGASDG-LGLGLA--RRLAAAGAEVILP-VRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred CCCEEEEeCCCCh-HHHHHH--HHHHHCCCEEEEE-eCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 4578888898888 688765 3333336675544 3444433 3334443 22 2337777777733333322
Q ss_pred --CCCccEEEEeCC
Q 027826 112 --LVDIDFLVVDSR 123 (218)
Q Consensus 112 --l~~fDfVFIDa~ 123 (218)
.+++|+++.-|.
T Consensus 89 ~~~~~iD~li~nAG 102 (313)
T PRK05854 89 AEGRPIHLLINNAG 102 (313)
T ss_pred HhCCCccEEEECCc
Confidence 236898887664
No 427
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=49.17 E-value=68 Score=28.75 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=54.7
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCCCccEEEEeC
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDFLVVDS 122 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~~fDfVFIDa 122 (218)
++|+=+| .|-+|.++ |+++.. .|..++++..+......++. ...|+.-+.....+ .......|+||+=.
T Consensus 4 ~~v~IvG--~GliG~s~--a~~l~~-~g~~v~i~g~d~~~~~~~~a-~~lgv~d~~~~~~~-----~~~~~~aD~Vivav 72 (279)
T COG0287 4 MKVGIVG--LGLMGGSL--ARALKE-AGLVVRIIGRDRSAATLKAA-LELGVIDELTVAGL-----AEAAAEADLVIVAV 72 (279)
T ss_pred cEEEEEC--CchHHHHH--HHHHHH-cCCeEEEEeecCcHHHHHHH-hhcCcccccccchh-----hhhcccCCEEEEec
Confidence 3455555 57778885 444444 34446555666654433322 12333222111111 12234789999999
Q ss_pred CccCcHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 123 RRKDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 123 ~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
.-..-.++++.+ +-+++ |.+|+|=.-...
T Consensus 73 Pi~~~~~~l~~l~~~l~~-g~iv~Dv~S~K~ 102 (279)
T COG0287 73 PIEATEEVLKELAPHLKK-GAIVTDVGSVKS 102 (279)
T ss_pred cHHHHHHHHHHhcccCCC-CCEEEecccccH
Confidence 888899999998 43443 455788665544
No 428
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=49.03 E-value=31 Score=34.26 Aligned_cols=72 Identities=14% Similarity=0.192 Sum_probs=46.3
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCC--CCccEEEE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGL--VDIDFLVV 120 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l--~~fDfVFI 120 (218)
.+|+=+ |+|-.|..+ |+.+.. .|.-++.+|.|+++.+..+ +.| ..++.||++..++|.+. +..|.+++
T Consensus 401 ~~vII~--G~Gr~G~~v--a~~L~~-~g~~vvvID~d~~~v~~~~---~~g--~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 401 PRVIIA--GFGRFGQIV--GRLLLS-SGVKMTVLDHDPDHIETLR---KFG--MKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred CcEEEE--ecChHHHHH--HHHHHh-CCCCEEEEECCHHHHHHHH---hcC--CeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 456553 445555554 444443 2433677788887655443 345 57899999888899765 48888887
Q ss_pred eCCc
Q 027826 121 DSRR 124 (218)
Q Consensus 121 Da~K 124 (218)
=.+.
T Consensus 471 ~~~d 474 (621)
T PRK03562 471 AIDD 474 (621)
T ss_pred EeCC
Confidence 6653
No 429
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=48.87 E-value=1.6e+02 Score=27.69 Aligned_cols=122 Identities=11% Similarity=0.100 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHH-hcCCCCcEEEEEEcCCccHHHH-HHHHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAV-ASRHTGGRHVCLVPDERSRSEY-VHALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~-a~~~~~G~vitt~e~~~~~~~~-a~~~~~agl~i~~i~G 101 (218)
.-.|...+|=..+++..+.+..+= +++|. +++-++. ++..+|.++|+....-...... ...+...|+.+.++..
T Consensus 60 ~~~p~~~~le~~lA~l~g~~~al~--~~SG~--~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (427)
T PRK05994 60 ITNPTNAVLEERVAALEGGTAALA--VASGH--AAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADA 135 (427)
T ss_pred CCCccHHHHHHHHHHHhCCCcEEE--EcCHH--HHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECC
Confidence 457888899999999999988765 45565 4443222 2233466755543221111111 1223467766544433
Q ss_pred CCCchhhcC-CCC-CccEEEEeCCc---cCcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMD-GLV-DIDFLVVDSRR---KDFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~-~l~-~fDfVFIDa~K---~~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+- .+.+. .+. .-.+|++..-- ....+ ++.+ .+. +.|.++|+||+...+
T Consensus 136 ~d--~~~l~~ai~~~tklV~vesp~NptG~v~d-l~~I~~la~~~gi~livD~a~a~~ 190 (427)
T PRK05994 136 DD--PASFERAITPRTKAIFIESIANPGGTVTD-IAAIAEVAHRAGLPLIVDNTLASP 190 (427)
T ss_pred CC--HHHHHHhcCcCCeEEEEECCCCCCCeecC-HHHHHHHHHHcCCEEEEECCcccc
Confidence 22 34343 343 57889986431 11222 2333 333 448899999997644
No 430
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=48.60 E-value=49 Score=33.30 Aligned_cols=30 Identities=33% Similarity=0.354 Sum_probs=18.4
Q ss_pred CccEEEEeCCccCcHHHHHHh-cCCCCCeEEEE
Q 027826 114 DIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 114 ~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
.||+|+||+....-......+ .+.. ++|++
T Consensus 655 ~yD~IiID~pp~~~~~d~~~l~~~~D--~vl~v 685 (754)
T TIGR01005 655 YSDCVVVDVGTADPVRDMRAAARLAI--IMLLV 685 (754)
T ss_pred hCCEEEEcCCCcchhHHHHHhhhhCC--eEEEE
Confidence 799999999876543333333 4333 44444
No 431
>PRK12829 short chain dehydrogenase; Provisional
Probab=48.53 E-value=84 Score=26.18 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=44.7
Q ss_pred HHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEcCCCchhhcCC----
Q 027826 37 AAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITGEADDEELMDG---- 111 (218)
Q Consensus 37 ~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~GdA~~~e~L~~---- 111 (218)
....+-+++|=+|...| +|..+. ..+.+.+.+ |+.+..+++..+ ..+... +..++++.+|.++.+.+..
T Consensus 6 ~~~~~~~~vlItGa~g~-iG~~~a--~~L~~~g~~-V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 6 LKPLDGLRVLVTGGASG-IGRAIA--EAFAEAGAR-VHVCDVSEAALAATAARLP--GAKVTATVADVADPAQVERVFDT 79 (264)
T ss_pred hhccCCCEEEEeCCCCc-HHHHHH--HHHHHCCCE-EEEEeCCHHHHHHHHHHHh--cCceEEEEccCCCHHHHHHHHHH
Confidence 34456799998888755 677754 333333556 444455543322 222222 2246778888744343322
Q ss_pred ----CCCccEEEEeCC
Q 027826 112 ----LVDIDFLVVDSR 123 (218)
Q Consensus 112 ----l~~fDfVFIDa~ 123 (218)
+.++|.|+.=+.
T Consensus 80 ~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 80 AVERFGGLDVLVNNAG 95 (264)
T ss_pred HHHHhCCCCEEEECCC
Confidence 237899886553
No 432
>PRK08303 short chain dehydrogenase; Provisional
Probab=48.00 E-value=93 Score=27.54 Aligned_cols=78 Identities=13% Similarity=0.109 Sum_probs=44.8
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCC----------cc-HHHHHHHHhhCCCceEEEEcCCCchhhc
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDE----------RS-RSEYVHALGEAGFSPQVITGEADDEELM 109 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~----------~~-~~~~a~~~~~agl~i~~i~GdA~~~e~L 109 (218)
.-|.+|=.|.+.| ||.+++.+.+ ..|.+|+.+ ..+ ++ ....++.+...|-.+.++..|....+.+
T Consensus 7 ~~k~~lITGgs~G-IG~aia~~la--~~G~~Vv~~-~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v 82 (305)
T PRK08303 7 RGKVALVAGATRG-AGRGIAVELG--AAGATVYVT-GRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQV 82 (305)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHH--HCCCEEEEE-ecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHH
Confidence 4578999899888 6877653333 336675543 332 12 2233344444554556677777333333
Q ss_pred CC--------CCCccEEEEeC
Q 027826 110 DG--------LVDIDFLVVDS 122 (218)
Q Consensus 110 ~~--------l~~fDfVFIDa 122 (218)
.. +..+|.++.-|
T Consensus 83 ~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 83 RALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHHcCCccEEEECC
Confidence 22 34789988877
No 433
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=47.87 E-value=1.1e+02 Score=28.02 Aligned_cols=78 Identities=6% Similarity=0.115 Sum_probs=42.1
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCc---------------------cHHHH-HHHHhh--CCCce
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDER---------------------SRSEY-VHALGE--AGFSP 96 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~---------------------~~~~~-a~~~~~--agl~i 96 (218)
+.++||=||+|. +||.+....+... -|+ ++.++.+. .+.++ ++.+.+ .++.|
T Consensus 23 ~~~~VlIiG~Gg--lGs~va~~La~aG-vg~-i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i 98 (338)
T PRK12475 23 REKHVLIVGAGA--LGAANAEALVRAG-IGK-LTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEI 98 (338)
T ss_pred cCCcEEEECCCH--HHHHHHHHHHHcC-CCE-EEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEE
Confidence 446799999853 6888774433332 256 55555542 12333 344543 34447
Q ss_pred EEEEcCCCchhhcCC-CCCccEEEEeCC
Q 027826 97 QVITGEADDEELMDG-LVDIDFLVVDSR 123 (218)
Q Consensus 97 ~~i~GdA~~~e~L~~-l~~fDfVFIDa~ 123 (218)
+.+..+.+. +.+.. +..+|+|+.=.+
T Consensus 99 ~~~~~~~~~-~~~~~~~~~~DlVid~~D 125 (338)
T PRK12475 99 VPVVTDVTV-EELEELVKEVDLIIDATD 125 (338)
T ss_pred EEEeccCCH-HHHHHHhcCCCEEEEcCC
Confidence 777777621 23333 358997654333
No 434
>PRK01625 sspH acid-soluble spore protein H; Provisional
Probab=47.74 E-value=8.2 Score=26.95 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=15.8
Q ss_pred CCCCceEeccccccccccc
Q 027826 198 GGSRWIKHFDRQSGEEHVI 216 (218)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~ 216 (218)
|.+-||.|+|+++|--+|+
T Consensus 22 G~pV~Iq~vde~~~tA~V~ 40 (59)
T PRK01625 22 GVPVWIESCDEQSGVAQVY 40 (59)
T ss_pred CEEEEEEEEcCCCCeEEEE
Confidence 7899999999999876553
No 435
>PRK10458 DNA cytosine methylase; Provisional
Probab=47.54 E-value=2.7e+02 Score=26.92 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=22.6
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHH
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRS 83 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~ 83 (218)
+++|+ |+|.-|..+||-.| |++++...|.++...
T Consensus 90 ~~iDL--FsGiGGl~lGfe~a----G~~~v~a~Eid~~A~ 123 (467)
T PRK10458 90 RFIDL--FAGIGGIRRGFEAI----GGQCVFTSEWNKHAV 123 (467)
T ss_pred eEEEe--CcCccHHHHHHHHc----CCEEEEEEechHHHH
Confidence 89996 44543466666443 678788888887543
No 436
>PRK07201 short chain dehydrogenase; Provisional
Probab=47.43 E-value=55 Score=31.81 Aligned_cols=64 Identities=20% Similarity=0.144 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHhcC--CCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchh--------hcCCCCCccEEE
Q 027826 51 HGGATATSVGLAVASR--HTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEE--------LMDGLVDIDFLV 119 (218)
Q Consensus 51 ~~GyiGsaiglA~a~~--~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e--------~L~~l~~fDfVF 119 (218)
++|+||+. ++..+. ..+.+ |+.+..++............+.. ++++.||. .+ .+..+..+|.||
T Consensus 8 atGfIG~~--lv~~Ll~~~~g~~-V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl--~~~~~~~~~~~~~~l~~~D~Vi 82 (657)
T PRK07201 8 GTGFIGRR--LVSRLLDRRREAT-VHVLVRRQSLSRLEALAAYWGADRVVPLVGDL--TEPGLGLSEADIAELGDIDHVV 82 (657)
T ss_pred CccHHHHH--HHHHHHhcCCCCE-EEEEECcchHHHHHHHHHhcCCCcEEEEeccc--CCccCCcCHHHHHHhcCCCEEE
No 437
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=47.40 E-value=44 Score=29.78 Aligned_cols=76 Identities=11% Similarity=0.042 Sum_probs=39.0
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEcCCCchhhcCCC-C--CccEE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITGEADDEELMDGL-V--DIDFL 118 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~GdA~~~e~L~~l-~--~fDfV 118 (218)
++||=.| ++|+||+.+. ..+.+.+.+|+.+ ..++.... ..+.+ ..+-.++++.+|.++.+.+.++ + .+|.|
T Consensus 5 k~ilItG-atG~IG~~l~--~~L~~~G~~V~~~-~r~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 79 (349)
T TIGR02622 5 KKVLVTG-HTGFKGSWLS--LWLLELGAEVYGY-SLDPPTSPNLFELL-NLAKKIEDHFGDIRDAAKLRKAIAEFKPEIV 79 (349)
T ss_pred CEEEEEC-CCChhHHHHH--HHHHHCCCEEEEE-eCCCccchhHHHHH-hhcCCceEEEccCCCHHHHHHHHhhcCCCEE
Confidence 6787766 4577898865 4333335564444 34332211 11112 1121367788887434444332 2 57888
Q ss_pred EEeCC
Q 027826 119 VVDSR 123 (218)
Q Consensus 119 FIDa~ 123 (218)
|.=|.
T Consensus 80 ih~A~ 84 (349)
T TIGR02622 80 FHLAA 84 (349)
T ss_pred EECCc
Confidence 75554
No 438
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=47.31 E-value=36 Score=26.93 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=37.3
Q ss_pred CcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcC-CCCCccEEEEeCC
Q 027826 51 HGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMD-GLVDIDFLVVDSR 123 (218)
Q Consensus 51 ~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~-~l~~fDfVFIDa~ 123 (218)
++|++|.. +++.+...+-+ |+.+-.++..... .-.++++.||..+.+.+. .+...|.||.=+.
T Consensus 6 atG~vG~~--l~~~L~~~~~~-V~~~~R~~~~~~~-------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 6 ATGFVGRA--LAKQLLRRGHE-VTALVRSPSKAED-------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp TTSHHHHH--HHHHHHHTTSE-EEEEESSGGGHHH-------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCH
T ss_pred CCChHHHH--HHHHHHHCCCE-EEEEecCchhccc-------ccccccceeeehhhhhhhhhhhhcchhhhhhh
Confidence 46886776 55555444567 5455566653322 222899999994444343 3557887776554
No 439
>PRK08251 short chain dehydrogenase; Provisional
Probab=46.97 E-value=80 Score=26.17 Aligned_cols=77 Identities=17% Similarity=0.165 Sum_probs=42.5
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHH-HHHHHHhh--CCCceEEEEcCCCchhhcCC--------
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRS-EYVHALGE--AGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~-~~a~~~~~--agl~i~~i~GdA~~~e~L~~-------- 111 (218)
+++|=.|...| ||.++. +.+.+.+-+++.. ..+++.. +....+.. .+..++++.+|.+..+.+.+
T Consensus 3 k~vlItGas~g-iG~~la--~~l~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (248)
T PRK08251 3 QKILITGASSG-LGAGMA--REFAAKGRDLALC-ARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDE 78 (248)
T ss_pred CEEEEECCCCH-HHHHHH--HHHHHcCCEEEEE-eCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46777777666 677755 3333334564444 4444432 22333332 24447888888844443322
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
+..+|.+|.-|.
T Consensus 79 ~~~id~vi~~ag 90 (248)
T PRK08251 79 LGGLDRVIVNAG 90 (248)
T ss_pred cCCCCEEEECCC
Confidence 347899988774
No 440
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=46.70 E-value=56 Score=31.30 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH
Q 027826 29 VAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL 89 (218)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~ 89 (218)
.+++++.+....+++.++.+|.+-||+... |+. . .|.-|..+|.+....+.|+.+
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~--lSl---~-y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRF--LSL---G-YGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHH--Hhh---c-cCceEEEeccchHHHHHHHHH
Confidence 467888889999999999999999994333 222 2 343366677776554444433
No 441
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=46.64 E-value=1.3e+02 Score=26.50 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=47.8
Q ss_pred CCCeEEEeCcCcchHHHHHH-HHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCC-CchhhcCCCC--Ccc
Q 027826 41 DARLIVETWSHGGATATSVG-LAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEA-DDEELMDGLV--DID 116 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaig-lA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA-~~~e~L~~l~--~fD 116 (218)
.-++||=.|+ |-+|.+.. +|+++ +.++|+....++++.+.+ ++.|.. .++.-+. +..++...++ .+|
T Consensus 160 ~g~~vlV~G~--g~vG~~~~~~a~~~---G~~~v~~~~~~~~~~~~~---~~~Ga~-~~i~~~~~~~~~~~~~~~~~~~d 230 (347)
T PRK10309 160 EGKNVIIIGA--GTIGLLAIQCAVAL---GAKSVTAIDINSEKLALA---KSLGAM-QTFNSREMSAPQIQSVLRELRFD 230 (347)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHc---CCCeEEEECCCHHHHHHH---HHcCCc-eEecCcccCHHHHHHHhcCCCCC
Confidence 3468888774 44555432 55554 444344445555444433 344543 2222111 0022222222 688
Q ss_pred EEEEeCCccCcHHHHHHh-cCCCCCeEEEEe
Q 027826 117 FLVVDSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 117 fVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
-+++|+--. ...++.+ .++++||.++.=
T Consensus 231 ~~v~d~~G~--~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 231 QLILETAGV--PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred eEEEECCCC--HHHHHHHHHHhhcCCEEEEE
Confidence 788998732 3455655 555557777653
No 442
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=46.59 E-value=9.2 Score=26.56 Aligned_cols=19 Identities=47% Similarity=0.716 Sum_probs=15.7
Q ss_pred CCCCCceEecccccccccc
Q 027826 197 KGGSRWIKHFDRQSGEEHV 215 (218)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~ 215 (218)
.|.+-||.|+|+++|--+|
T Consensus 21 ~G~pV~Ie~vde~~~tA~V 39 (58)
T TIGR02861 21 KGVPVYIEHVDEQSGTARV 39 (58)
T ss_pred CCEEEEEEEEcCCCCeEEE
Confidence 3789999999999986554
No 443
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=46.54 E-value=2.3e+02 Score=25.82 Aligned_cols=137 Identities=9% Similarity=0.086 Sum_probs=76.7
Q ss_pred hhhHHHHHHhhhccCCCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHH-hc-CCCCcEEEEEEcCCccHHHH
Q 027826 8 ETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAV-AS-RHTGGRHVCLVPDERSRSEY 85 (218)
Q Consensus 8 ~~a~~ayl~~l~~~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~-a~-~~~~G~vitt~e~~~~~~~~ 85 (218)
+...++-.+.+.......+|.+.+|-..+++..+++.++= |.+|. .++-++. ++ ..+|.++++. . +.....
T Consensus 14 ~~e~~~~~~~l~~~~~~~g~~~~~le~~la~~~g~~~~v~--~~sgt--~al~lal~al~~~~Gd~Viv~--~-~~~~~~ 86 (379)
T PRK11658 14 DEELAAVKEVLRSGWITTGPKNQALEQAFCQLTGNQHAIA--VSSAT--AGMHITLMALGIGPGDEVITP--S-LTWVST 86 (379)
T ss_pred HHHHHHHHHHHHcCCccCCHhHHHHHHHHHHHhCCCeEEE--ECCHH--HHHHHHHHHcCCCCCCEEEEC--C-CcHHHH
Confidence 3445556666665555568999999999999999998766 45555 4444332 23 2346675543 2 333334
Q ss_pred HHHHhhCCCceEEEEcCCC----chhhcC-CCC-CccEEEEeCCccCcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 86 VHALGEAGFSPQVITGEAD----DEELMD-GLV-DIDFLVVDSRRKDFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 86 a~~~~~agl~i~~i~GdA~----~~e~L~-~l~-~fDfVFIDa~K~~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
.......|..+.++--|.+ +.+.+. .+. .-.+|+....- .++.-++.+ .+. +.|-.||.|++...|
T Consensus 87 ~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~~tkav~~~~~~-G~~~d~~~i~~~a~~~gi~vi~D~a~a~g 160 (379)
T PRK11658 87 LNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITPRTKAIIPVHYA-GAPADLDAIRAIGERYGIPVIEDAAHAVG 160 (379)
T ss_pred HHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcccCCeEEEEeCCC-CCcCCHHHHHHHHHHcCCeEEEECCCccC
Confidence 4445578887554432220 122232 232 44566644432 223223333 333 347889999998766
No 444
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=46.52 E-value=1.3e+02 Score=27.58 Aligned_cols=123 Identities=16% Similarity=0.145 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~G 101 (218)
.-.|...+|-..+++..++..++= +.+|. .++-++ .++..++.++++.-..-..... ........|+++.++..
T Consensus 51 ~~~p~~~~le~~la~l~g~~~~~~--~~sG~--~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~ 126 (380)
T TIGR01325 51 YANPTVAAFEERIAALEGAERAVA--TATGM--SAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDP 126 (380)
T ss_pred CCCchHHHHHHHHHHHhCCCcEEE--ECCHH--HHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECC
Confidence 457888899999999999887764 55565 444322 2333346675554221111112 22334567877555533
Q ss_pred CCCchhhcC-CCC-CccEEEEeCCccC--cHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMD-GLV-DIDFLVVDSRRKD--FARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~-~l~-~fDfVFIDa~K~~--Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+- .+.+. .+. ...+|++..--.- -...++.+ .+. +.|..+|+||+...+
T Consensus 127 ~d--~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~ 181 (380)
T TIGR01325 127 TD--LNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATP 181 (380)
T ss_pred CC--HHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccc
Confidence 32 33333 343 5689998744211 11122333 332 448899999996433
No 445
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=46.46 E-value=28 Score=25.89 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=40.7
Q ss_pred HHHHHHhhCCCceEEEEcCCCchhhcCCCC--CccEEEEeC-CccCcHHHHHHh---cCCCCCeEEEEeC
Q 027826 84 EYVHALGEAGFSPQVITGEADDEELMDGLV--DIDFLVVDS-RRKDFARVLRLA---NLSSRGAVLVCKN 147 (218)
Q Consensus 84 ~~a~~~~~agl~i~~i~GdA~~~e~L~~l~--~fDfVFIDa-~K~~Y~~~~~~~---~L~~~GgvIV~DN 147 (218)
..+..++++|++++++-.+.+..++...+. .+|+|.+-+ .-.++....+.+ +-..++..|++=.
T Consensus 19 ~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG 88 (121)
T PF02310_consen 19 YLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGG 88 (121)
T ss_dssp HHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred HHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 345566788988776644442233444342 899999999 777777777776 3334476776543
No 446
>PRK12937 short chain dehydrogenase; Provisional
Probab=46.02 E-value=1.2e+02 Score=24.83 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=44.5
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
+.++||=.|+..| +|..++ ..+...+.+++.+...++.. ....+.+...+-.+.++..|.+..+.+.+
T Consensus 4 ~~~~vlItG~~~~-iG~~la--~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 4 SNKVAIVTGASRG-IGAAIA--RRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CCCEEEEeCCCch-HHHHHH--HHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4578888888655 688855 33333356755443333322 22233444455457777777733322222
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
+.++|.++.-|.
T Consensus 81 ~~~id~vi~~ag 92 (245)
T PRK12937 81 FGRIDVLVNNAG 92 (245)
T ss_pred cCCCCEEEECCC
Confidence 247899988665
No 447
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.61 E-value=25 Score=30.26 Aligned_cols=76 Identities=12% Similarity=0.121 Sum_probs=47.1
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCcc---------------HHHHHHHHhhCCCceEEEEcCCC
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERS---------------RSEYVHALGEAGFSPQVITGEAD 104 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~---------------~~~~a~~~~~agl~i~~i~GdA~ 104 (218)
.++.-.||+=|=+.- +.-...+.+ .|+++...-.++. +.++++...++|+.|.++..+-
T Consensus 21 ~~~~~~lef~TK~~n----v~~Ll~l~~-~~~t~~rfSlnp~~Ii~~~E~~T~sl~~Rl~Aa~k~a~aGy~Vg~~~~PI- 94 (199)
T TIGR00620 21 QSDFGKLRFVTKFHH----VDHLLDAKH-NGKTRFRFSINADYVIKNFEPGTSPLDKRIEAAVKVAKAGYPLGFIIAPI- 94 (199)
T ss_pred cCCCcEEEEEEcccc----hhhHhcCCC-CCCEEEEEEeCHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCeEEEEeece-
Confidence 566777887664443 221233344 4565544444432 3344455567777777766554
Q ss_pred chhhcCCCCCccEEEEeCCccCcHHHHHHh
Q 027826 105 DEELMDGLVDIDFLVVDSRRKDFARVLRLA 134 (218)
Q Consensus 105 ~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~ 134 (218)
+.++.|++.|.++++.+
T Consensus 95 -------------i~~egW~e~Y~~l~~~l 111 (199)
T TIGR00620 95 -------------YIHEGWKEGYRNLLEKL 111 (199)
T ss_pred -------------EeeCChHHHHHHHHHHH
Confidence 67899999999999998
No 448
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.38 E-value=1e+02 Score=25.35 Aligned_cols=78 Identities=17% Similarity=0.275 Sum_probs=43.0
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
..++||=+|...| +|..+. ..+.+.|-+ |+....+++..... ..+.. +..+.++.+|..+.+.+..
T Consensus 4 ~~~~vlItGasg~-iG~~l~--~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07231 4 EGKVAIVTGASSG-IGEGIA--RRFAAEGAR-VVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEADVEAAVAAALER 78 (251)
T ss_pred CCcEEEEECCCCh-HHHHHH--HHHHHCCCE-EEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3467887777665 677754 333333556 44445655433322 22222 4447788888833333332
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
+..+|.|+.=+.
T Consensus 79 ~~~~d~vi~~ag 90 (251)
T PRK07231 79 FGSVDILVNNAG 90 (251)
T ss_pred hCCCCEEEECCC
Confidence 236898877553
No 449
>PRK06181 short chain dehydrogenase; Provisional
Probab=45.36 E-value=94 Score=26.03 Aligned_cols=77 Identities=19% Similarity=0.347 Sum_probs=40.5
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcCC--------CC
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMDG--------LV 113 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~~--------l~ 113 (218)
+.||=.|.+.| +|..+....+ ..+.+++.+ ..++.. ....+.+...+-.+.++.+|..+.+.+.. +.
T Consensus 2 ~~vlVtGasg~-iG~~la~~l~--~~g~~Vi~~-~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 2 KVVIITGASEG-IGRALAVRLA--RAGAQLVLA-ARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CEEEEecCCcH-HHHHHHHHHH--HCCCEEEEE-eCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 35676676655 6777653332 335675544 444432 22233344444447777788733332222 23
Q ss_pred CccEEEEeCC
Q 027826 114 DIDFLVVDSR 123 (218)
Q Consensus 114 ~fDfVFIDa~ 123 (218)
.+|.|+.-+.
T Consensus 78 ~id~vi~~ag 87 (263)
T PRK06181 78 GIDILVNNAG 87 (263)
T ss_pred CCCEEEECCC
Confidence 6788876654
No 450
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=45.31 E-value=55 Score=33.07 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=23.9
Q ss_pred cCCCeEEEeCcCcchHHHHHH--HHHhcCCCCcEEEEEEcCCcc
Q 027826 40 WDARLIVETWSHGGATATSVG--LAVASRHTGGRHVCLVPDERS 81 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaig--lA~a~~~~~G~vitt~e~~~~ 81 (218)
.++|.|+=.++..|.-=|++. ||.++...|-+ |..++.|..
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~r-VLlID~D~r 571 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQK-VLFIDADLR 571 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCe-EEEEeCCCC
Confidence 356667766665553215444 78777665556 555566654
No 451
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=45.29 E-value=50 Score=30.06 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=40.6
Q ss_pred CCeEEEeC-cCcchHHHHHH--HHHhcCCCCcEEEEEEcCCccHHHH---HHHH-hhCCCceEEEEcCCCch----hhcC
Q 027826 42 ARLIVETW-SHGGATATSVG--LAVASRHTGGRHVCLVPDERSRSEY---VHAL-GEAGFSPQVITGEADDE----ELMD 110 (218)
Q Consensus 42 ak~ILEiG-t~~GyiGsaig--lA~a~~~~~G~vitt~e~~~~~~~~---a~~~-~~agl~i~~i~GdA~~~----e~L~ 110 (218)
++.|+=+| +|+|= ||+. ||..+.+.+++ |..+..|..+..+ .+.+ .+.++.+.......++. +.+.
T Consensus 114 ~~vi~lvGpnGsGK--TTt~~kLA~~l~~~g~~-V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 114 PFVILVVGVNGVGK--TTTIGKLAHKYKAQGKK-VLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CeEEEEECCCCCcH--HHHHHHHHHHHHhcCCe-EEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 34455555 23443 3332 77766665667 5555566544322 2233 35665522211111112 2222
Q ss_pred C--CCCccEEEEeCCccCc
Q 027826 111 G--LVDIDFLVVDSRRKDF 127 (218)
Q Consensus 111 ~--l~~fDfVFIDa~K~~Y 127 (218)
. ...||+|+||..-..+
T Consensus 191 ~~~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 191 AAKARGIDVLIIDTAGRLH 209 (318)
T ss_pred HHHhCCCCEEEEeCCCCCc
Confidence 1 2489999999986544
No 452
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=45.17 E-value=35 Score=30.46 Aligned_cols=72 Identities=21% Similarity=0.239 Sum_probs=41.4
Q ss_pred cCcchHHHHHH--HHHhcCCCCcEEEEEEcCCccH------HHHHHHHhhCCCce--------EE-EEcCCCchhhcCCC
Q 027826 50 SHGGATATSVG--LAVASRHTGGRHVCLVPDERSR------SEYVHALGEAGFSP--------QV-ITGEADDEELMDGL 112 (218)
Q Consensus 50 t~~GyiGsaig--lA~a~~~~~G~vitt~e~~~~~------~~~a~~~~~agl~i--------~~-i~GdA~~~e~L~~l 112 (218)
.++|= ||+. |+..+... |+ |+++..+++. .+..+ +.++|-.. .+ .....++.+.|..+
T Consensus 10 ~gSGK--TTLi~~Li~~L~~~-G~-V~~IKhd~h~~~~~~g~Ds~~-~~~aGa~~v~~~s~~~~~~~~~~~~l~~~l~~l 84 (274)
T PRK14493 10 KATGK--TTLVERLVDRLSGR-GR-VGTVKHMDTERLNPDGTDTGR-HFDAGADVVYGLTDGEWVASGRDRSLDDALDDL 84 (274)
T ss_pred CCCCH--HHHHHHHHHHHHhC-CC-EEEEEEcCCCcCCCCCCCcHH-HHHCCCcEEEEecCCeEEEEecCCCHHHHHHhh
Confidence 36676 7775 77777664 57 7777776632 11112 23555441 11 12222335666666
Q ss_pred C-CccEEEEeCCccC
Q 027826 113 V-DIDFLVVDSRRKD 126 (218)
Q Consensus 113 ~-~fDfVFIDa~K~~ 126 (218)
. .+|+|++|+.|..
T Consensus 85 ~~~~D~vlVEG~k~~ 99 (274)
T PRK14493 85 APGMDYAVVEGFKDS 99 (274)
T ss_pred CcCCCEEEEECCCCC
Confidence 4 7999999999863
No 453
>PRK06767 methionine gamma-lyase; Provisional
Probab=45.03 E-value=1.1e+02 Score=28.22 Aligned_cols=123 Identities=11% Similarity=0.117 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~G 101 (218)
.-.|...+|-..+++..+++..+=++ +|. +++-++ .++..+|.++++....-.......+.+ ...|+++.+...
T Consensus 58 ~~~pt~~~Le~~lA~l~G~~~al~~~--sG~--~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~ 133 (386)
T PRK06767 58 LGNPTVKLFEERMAVLEGGEEALAFG--SGM--AAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDM 133 (386)
T ss_pred CCCcchHHHHHHHHHHhCCCcEEEEC--CHH--HHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCC
Confidence 34688889999999999988766654 444 444322 233334667555422111111112222 245655444432
Q ss_pred CCCchhhcC-CCC-CccEEEEeCCcc--CcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMD-GLV-DIDFLVVDSRRK--DFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~-~l~-~fDfVFIDa~K~--~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+- .+.+. .+. .-++||+..--. ...--++.+ .+. +.|.++++||++..+
T Consensus 134 ~d--~~~l~~~i~~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~ 188 (386)
T PRK06767 134 ET--EADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSP 188 (386)
T ss_pred CC--HHHHHHhhCcCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 22 33333 343 578999875321 111112223 332 448899999997433
No 454
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=44.93 E-value=58 Score=32.45 Aligned_cols=99 Identities=10% Similarity=0.055 Sum_probs=64.7
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEE-EEEEcCCccHHHHHHHHh--hCCCceEEEEcCCCchhhcCCCCCccEE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRH-VCLVPDERSRSEYVHALG--EAGFSPQVITGEADDEELMDGLVDIDFL 118 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~v-itt~e~~~~~~~~a~~~~--~agl~i~~i~GdA~~~e~L~~l~~fDfV 118 (218)
...|.=+|.|-|=++.++ .+|+..++-++ +..+|.||.....-++.+ ..+-.|+++.+|- .+.-+...+.|++
T Consensus 368 ~tVimvlGaGRGPLv~~~--lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DM--R~w~ap~eq~DI~ 443 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDAS--LKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDM--RKWNAPREQADII 443 (649)
T ss_pred eEEEEEecCCCccHHHHH--HHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccc--cccCCchhhccch
Confidence 567888999999866663 44444444443 678899997665555443 3333399999998 6544432355555
Q ss_pred EEe-----CCccCcHHHHHHh-cCCCCCeEEE
Q 027826 119 VVD-----SRRKDFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 119 FID-----a~K~~Y~~~~~~~-~L~~~GgvIV 144 (218)
.-- +|.+.-|+.++-+ +.+++.||-|
T Consensus 444 VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 444 VSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred HHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 322 6678999999998 6665577765
No 455
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.88 E-value=67 Score=26.35 Aligned_cols=78 Identities=17% Similarity=0.268 Sum_probs=43.7
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEcCCCchhhcCC--------CC
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITGEADDEELMDG--------LV 113 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~GdA~~~e~L~~--------l~ 113 (218)
++||=+|...| +|..+... +...+-+++.+...+++... ....+...+-.+.++.+|.++.+.+.. +.
T Consensus 6 ~~ilI~Gasg~-iG~~la~~--l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK05565 6 KVAIVTGASGG-IGRAIAEL--LAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFG 82 (247)
T ss_pred CEEEEeCCCcH-HHHHHHHH--HHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 57888887655 67776533 32334564443255544332 223334444448888899844444433 23
Q ss_pred CccEEEEeCC
Q 027826 114 DIDFLVVDSR 123 (218)
Q Consensus 114 ~fDfVFIDa~ 123 (218)
++|.||.=+.
T Consensus 83 ~id~vi~~ag 92 (247)
T PRK05565 83 KIDILVNNAG 92 (247)
T ss_pred CCCEEEECCC
Confidence 7899887554
No 456
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=44.86 E-value=83 Score=28.59 Aligned_cols=45 Identities=9% Similarity=-0.101 Sum_probs=24.5
Q ss_pred HhcCCCeEEEeCcCcchHH-HHHHHHHhcCCCCcEEEEEEcCCccHHHHHH
Q 027826 38 AGWDARLIVETWSHGGATA-TSVGLAVASRHTGGRHVCLVPDERSRSEYVH 87 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiG-saiglA~a~~~~~G~vitt~e~~~~~~~~a~ 87 (218)
+...-++||-+|++. +| .++.+|++... ++++. ...++++.+.++
T Consensus 181 ~~~~g~~VlV~g~G~--vG~~~~~la~~~g~--~~vi~-~~~~~~~~~~~~ 226 (386)
T cd08283 181 EVKPGDTVAVWGCGP--VGLFAARSAKLLGA--ERVIA-IDRVPERLEMAR 226 (386)
T ss_pred cCCCCCEEEEECCCH--HHHHHHHHHHHcCC--CEEEE-EcCCHHHHHHHH
Confidence 344557899988643 33 34457776531 35444 455555544444
No 457
>PRK06114 short chain dehydrogenase; Provisional
Probab=44.83 E-value=99 Score=25.92 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=44.3
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCcc-HHHHHHHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERS-RSEYVHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~-~~~~a~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
.-|.+|=.|.+.| ||.+++...+ +.|.+++.+...++. .....+.+...+..+.++..|..+.+.+..
T Consensus 7 ~~k~~lVtG~s~g-IG~~ia~~l~--~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 83 (254)
T PRK06114 7 DGQVAFVTGAGSG-IGQRIAIGLA--QAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAE 83 (254)
T ss_pred CCCEEEEECCCch-HHHHHHHHHH--HCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3468888888777 6888653333 335575554333222 233334454555456677777733332322
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
+.++|.++.=|.
T Consensus 84 ~g~id~li~~ag 95 (254)
T PRK06114 84 LGALTLAVNAAG 95 (254)
T ss_pred cCCCCEEEECCC
Confidence 346888876554
No 458
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.54 E-value=1.2e+02 Score=24.90 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=42.2
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHH-HHHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY-VHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~-a~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
+.++||=.|.+.| +|..+. +.+.+.|.+++.+ ..+++.... .+.....+ .++++.+|.+..+.+..
T Consensus 4 ~~~~vlItGa~g~-iG~~~a--~~l~~~G~~V~~~-~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 4 KGKKVAIIGVSEG-LGYAVA--YFALKEGAQVCIN-SRNENKLKRMKKTLSKYG-NIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CCcEEEEECCCch-HHHHHH--HHHHHCCCEEEEE-eCCHHHHHHHHHHHHhcC-CeEEEECCCCCHHHHHHHHHHHHHH
Confidence 4578999888766 677754 3333335575554 344433222 22222222 36777787733232322
Q ss_pred CCCccEEEEeCC
Q 027826 112 LVDIDFLVVDSR 123 (218)
Q Consensus 112 l~~fDfVFIDa~ 123 (218)
...+|.++.-+.
T Consensus 79 ~~~id~ii~~ag 90 (238)
T PRK05786 79 LNAIDGLVVTVG 90 (238)
T ss_pred hCCCCEEEEcCC
Confidence 235798887764
No 459
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=44.34 E-value=1.4e+02 Score=24.67 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=42.4
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHH-HHHHhhCCCceEEEEcCCCchhhc--------CCCC
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY-VHALGEAGFSPQVITGEADDEELM--------DGLV 113 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~-a~~~~~agl~i~~i~GdA~~~e~L--------~~l~ 113 (218)
|+||=.|.+.| +|..+. ..+.+.+.+++.+...+++..+. ...+...+..+.++..|.+..+.+ +.+.
T Consensus 3 k~ilItGas~g-iG~~la--~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK06947 3 KVVLITGASRG-IGRATA--VLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFG 79 (248)
T ss_pred cEEEEeCCCCc-HHHHHH--HHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 57888888776 688865 33333355655444444433322 223334444467777776322222 1234
Q ss_pred CccEEEEeCC
Q 027826 114 DIDFLVVDSR 123 (218)
Q Consensus 114 ~fDfVFIDa~ 123 (218)
++|.++.-|.
T Consensus 80 ~id~li~~ag 89 (248)
T PRK06947 80 RLDALVNNAG 89 (248)
T ss_pred CCCEEEECCc
Confidence 6898886664
No 460
>PLN02827 Alcohol dehydrogenase-like
Probab=43.87 E-value=1.2e+02 Score=27.71 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=46.4
Q ss_pred cCCCeEEEeCcCcchHHHHHH-HHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc--eEEEE--cCCCchhhcCCC-C
Q 027826 40 WDARLIVETWSHGGATATSVG-LAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS--PQVIT--GEADDEELMDGL-V 113 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaig-lA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~--i~~i~--GdA~~~e~L~~l-~ 113 (218)
..-++||=.|+ |-+|.++. +|+++ |.+.|++.+.++++.+.++ +.|.. +.... .+. .+.+..+ .
T Consensus 192 ~~g~~VlV~G~--G~vG~~~iqlak~~---G~~~vi~~~~~~~~~~~a~---~lGa~~~i~~~~~~~~~--~~~v~~~~~ 261 (378)
T PLN02827 192 SKGSSVVIFGL--GTVGLSVAQGAKLR---GASQIIGVDINPEKAEKAK---TFGVTDFINPNDLSEPI--QQVIKRMTG 261 (378)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc---CCCeEEEECCCHHHHHHHH---HcCCcEEEcccccchHH--HHHHHHHhC
Confidence 34568887775 44555542 55553 4443444455554444443 45654 22111 122 2333332 2
Q ss_pred -CccEEEEeCCccCcHHHHHHh-cCCCCC-eEEEE
Q 027826 114 -DIDFLVVDSRRKDFARVLRLA-NLSSRG-AVLVC 145 (218)
Q Consensus 114 -~fDfVFIDa~K~~Y~~~~~~~-~L~~~G-gvIV~ 145 (218)
.+|+|| |+- .....++.+ .++++| |.++.
T Consensus 262 ~g~d~vi-d~~--G~~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 262 GGADYSF-ECV--GDTGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred CCCCEEE-ECC--CChHHHHHHHHhhccCCCEEEE
Confidence 689765 765 333344444 555557 88865
No 461
>PRK12744 short chain dehydrogenase; Provisional
Probab=43.71 E-value=97 Score=25.98 Aligned_cols=78 Identities=10% Similarity=0.129 Sum_probs=42.3
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCC---cc-HHHHHHHHhhCCCceEEEEcCCCchhhcCC-------
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDE---RS-RSEYVHALGEAGFSPQVITGEADDEELMDG------- 111 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~---~~-~~~~a~~~~~agl~i~~i~GdA~~~e~L~~------- 111 (218)
|++|=.|...| ||.++. +.+...|.+++.+.... .+ .....+.+...+..++++..|.++.+.+.+
T Consensus 9 k~vlItGa~~g-IG~~~a--~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 9 KVVLIAGGAKN-LGGLIA--RDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred cEEEEECCCch-HHHHHH--HHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 68888887777 688754 43333355644332221 11 112223333445457778888844433332
Q ss_pred -CCCccEEEEeCC
Q 027826 112 -LVDIDFLVVDSR 123 (218)
Q Consensus 112 -l~~fDfVFIDa~ 123 (218)
+.++|.++.-|.
T Consensus 86 ~~~~id~li~~ag 98 (257)
T PRK12744 86 AFGRPDIAINTVG 98 (257)
T ss_pred hhCCCCEEEECCc
Confidence 246898886664
No 462
>PLN02242 methionine gamma-lyase
Probab=43.56 E-value=1.7e+02 Score=27.37 Aligned_cols=119 Identities=14% Similarity=0.141 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHH-hcCCCCcEEEEEEcCCccHHHHHH----HHh-hCCCceE
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAV-ASRHTGGRHVCLVPDERSRSEYVH----ALG-EAGFSPQ 97 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~-a~~~~~G~vitt~e~~~~~~~~a~----~~~-~agl~i~ 97 (218)
.-.|...+|=+.|+...+.+.++= |.+|. .++-++. ++..+|.++++. . +....... .+. ..|..+.
T Consensus 73 ~~~Pt~~~LE~~lA~l~g~~~~l~--~~sG~--~Ai~~al~al~~~GD~Vl~~--~-~~Y~~~~~~~~~~~~~~~G~~~~ 145 (418)
T PLN02242 73 HFNPTVLNLGRQMAALEGTEAAYC--TASGM--SAISSVLLQLCSSGGHVVAS--N-TLYGGTHALLAHFLPRKCNITTT 145 (418)
T ss_pred CCChhHHHHHHHHHHHhCCCeEEE--EccHH--HHHHHHHHHHhCCCCEEEEc--C-CcHHHHHHHHHHhhhhccCceEE
Confidence 467999999999999999999873 66676 5554222 333446675443 2 22222212 122 2666544
Q ss_pred EEEcCCCchhhcC-CCC--CccEEEEeCCcc--CcHHHHHHh-cCC-CCCeEEEEeCCCCC
Q 027826 98 VITGEADDEELMD-GLV--DIDFLVVDSRRK--DFARVLRLA-NLS-SRGAVLVCKNAYSR 151 (218)
Q Consensus 98 ~i~GdA~~~e~L~-~l~--~fDfVFIDa~K~--~Y~~~~~~~-~L~-~~GgvIV~DNvl~~ 151 (218)
++..+- .+.|. .+. ...+|++..--. .....++.+ .+. +.|.+||+||+...
T Consensus 146 ~~d~~d--~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~ 204 (418)
T PLN02242 146 FVDITD--LEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAP 204 (418)
T ss_pred EcCCCC--HHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCc
Confidence 443322 34343 343 378999985411 111122333 333 34889999999743
No 463
>PRK08267 short chain dehydrogenase; Provisional
Probab=43.29 E-value=85 Score=26.32 Aligned_cols=75 Identities=16% Similarity=0.077 Sum_probs=39.2
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEcCCCchhhcCC---------C
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITGEADDEELMDG---------L 112 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~GdA~~~e~L~~---------l 112 (218)
|+||=+|.+.| +|.++. ..+...+-+ |..+..+++... .++... +-.++++.+|.+..+.+.+ .
T Consensus 2 k~vlItGasg~-iG~~la--~~l~~~G~~-V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 2 KSIFITGAASG-IGRATA--LLFAAEGWR-VGAYDINEAGLAALAAELG--AGNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred cEEEEeCCCch-HHHHHH--HHHHHCCCe-EEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 56777787766 677755 333333556 444445443221 222211 3337788888843333322 2
Q ss_pred CCccEEEEeCC
Q 027826 113 VDIDFLVVDSR 123 (218)
Q Consensus 113 ~~fDfVFIDa~ 123 (218)
.++|.|+.=|.
T Consensus 76 ~~id~vi~~ag 86 (260)
T PRK08267 76 GRLDVLFNNAG 86 (260)
T ss_pred CCCCEEEECCC
Confidence 36798886553
No 464
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=43.25 E-value=1.2e+02 Score=27.90 Aligned_cols=123 Identities=12% Similarity=0.080 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~i~~i~G 101 (218)
.-.|...+|-..+++..+.+..+=++ +|. .+|-++ .++..++.++++....-........ .+...|+ ++...
T Consensus 58 ~~~p~~~~Le~~lA~~~g~~~~i~~~--sG~--~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi--~~~~~ 131 (388)
T PRK07811 58 TGNPTRTALEEQLAALEGGAYGRAFS--SGM--AATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGV--EYTPV 131 (388)
T ss_pred CCCccHHHHHHHHHHHhCCCceEEeC--CHH--HHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCe--EEEEe
Confidence 35577889999999999888776654 454 444322 2333446675554322211111111 1223454 44444
Q ss_pred CCCchhhc-CCCC-CccEEEEeCCcc--CcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELM-DGLV-DIDFLVVDSRRK--DFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L-~~l~-~fDfVFIDa~K~--~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
|.++.+.| +.+. ..++||+..--. ....-++.+ .+. +.|.++|+||+...+
T Consensus 132 d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~ 188 (388)
T PRK07811 132 DLSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASP 188 (388)
T ss_pred CCCCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 43223433 3344 678999874321 112223333 332 348899999997544
No 465
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=43.22 E-value=30 Score=31.93 Aligned_cols=73 Identities=14% Similarity=0.103 Sum_probs=41.4
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCcc-HHHHHHHHhhCCCceEEEEcCCCchhhcCCC-C--CccEEE
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERS-RSEYVHALGEAGFSPQVITGEADDEELMDGL-V--DIDFLV 119 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~-~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l-~--~fDfVF 119 (218)
+||= --++|||||-...+.. +.|=. ++++++... ..++-.. .. ++|++||.-+.+.|.++ . ++|-|+
T Consensus 2 ~iLV-tGGAGYIGSHtv~~Ll--~~G~~-vvV~DNL~~g~~~~v~~--~~---~~f~~gDi~D~~~L~~vf~~~~idaVi 72 (329)
T COG1087 2 KVLV-TGGAGYIGSHTVRQLL--KTGHE-VVVLDNLSNGHKIALLK--LQ---FKFYEGDLLDRALLTAVFEENKIDAVV 72 (329)
T ss_pred eEEE-ecCcchhHHHHHHHHH--HCCCe-EEEEecCCCCCHHHhhh--cc---CceEEeccccHHHHHHHHHhcCCCEEE
Confidence 3443 3478999998654433 32334 444444332 2222111 11 68999999555577764 2 888887
Q ss_pred EeCCcc
Q 027826 120 VDSRRK 125 (218)
Q Consensus 120 IDa~K~ 125 (218)
-=|...
T Consensus 73 HFAa~~ 78 (329)
T COG1087 73 HFAASI 78 (329)
T ss_pred ECcccc
Confidence 666543
No 466
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=42.78 E-value=25 Score=30.72 Aligned_cols=95 Identities=15% Similarity=0.201 Sum_probs=49.2
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH--------HHhhCCC-c--------eEEEEcCCCc
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH--------ALGEAGF-S--------PQVITGEADD 105 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~--------~~~~agl-~--------i~~i~GdA~~ 105 (218)
++|-=||+ |++|++++...+.. +-. |+..+.+++..+.++ .+.+.|. . .++....-
T Consensus 4 ~kI~VIG~--G~mG~~ia~~la~~--g~~-V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~-- 76 (282)
T PRK05808 4 QKIGVIGA--GTMGNGIAQVCAVA--GYD-VVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTD-- 76 (282)
T ss_pred cEEEEEcc--CHHHHHHHHHHHHC--CCc-eEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC--
Confidence 45555555 88888876544432 335 555666666543221 2223332 1 01111111
Q ss_pred hhhcCCCCCccEEEEeCCccCc---HHHHHHh-cCCCCCeEEEEeCCC
Q 027826 106 EELMDGLVDIDFLVVDSRRKDF---ARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 106 ~e~L~~l~~fDfVFIDa~K~~Y---~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
.+ .+...|+||+=. +++. .+.|+.+ +..+++.+| +-|+-
T Consensus 77 ~~---~~~~aDlVi~av-~e~~~~k~~~~~~l~~~~~~~~il-~s~ts 119 (282)
T PRK05808 77 LD---DLKDADLVIEAA-TENMDLKKKIFAQLDEIAKPEAIL-ATNTS 119 (282)
T ss_pred HH---HhccCCeeeecc-cccHHHHHHHHHHHHhhCCCCcEE-EECCC
Confidence 11 235789998855 4444 3777777 666657666 55553
No 467
>PRK07576 short chain dehydrogenase; Provisional
Probab=42.61 E-value=1e+02 Score=26.22 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=42.0
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
.-|+||=.|.+.| ||.++....+ ..|.+++.+ ..+++. ...++.+...+-.+.++..|.+..+.+.+
T Consensus 8 ~~k~ilItGasgg-IG~~la~~l~--~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 8 AGKNVVVVGGTSG-INLGIAQAFA--RAGANVAVA-SRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred CCCEEEEECCCch-HHHHHHHHHH--HCCCEEEEE-eCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 4578888887666 6888653333 235565544 444433 22333444444346677777733333322
Q ss_pred CCCccEEEEeC
Q 027826 112 LVDIDFLVVDS 122 (218)
Q Consensus 112 l~~fDfVFIDa 122 (218)
+..+|.++.-|
T Consensus 84 ~~~iD~vi~~a 94 (264)
T PRK07576 84 FGPIDVLVSGA 94 (264)
T ss_pred cCCCCEEEECC
Confidence 23678887543
No 468
>PRK12743 oxidoreductase; Provisional
Probab=42.29 E-value=1.4e+02 Score=24.99 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=43.2
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHH-HHHHHHhhCCCceEEEEcCCCchhhc--------CCCC
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRS-EYVHALGEAGFSPQVITGEADDEELM--------DGLV 113 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~-~~a~~~~~agl~i~~i~GdA~~~e~L--------~~l~ 113 (218)
|+||=.|++.| +|.++. ..+.+.|.+++.+...+++.. ...+.+...|-.+.++..|.+..+.+ ..+.
T Consensus 3 k~vlItGas~g-iG~~~a--~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 3 QVAIVTASDSG-IGKACA--LLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CEEEEECCCch-HHHHHH--HHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 57888888777 677754 333333556544433343322 22334445555577777777332222 2234
Q ss_pred CccEEEEeCC
Q 027826 114 DIDFLVVDSR 123 (218)
Q Consensus 114 ~fDfVFIDa~ 123 (218)
++|.++.-+.
T Consensus 80 ~id~li~~ag 89 (256)
T PRK12743 80 RIDVLVNNAG 89 (256)
T ss_pred CCCEEEECCC
Confidence 7898887654
No 469
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=42.24 E-value=60 Score=30.76 Aligned_cols=105 Identities=20% Similarity=0.311 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHhcCC--CeEEEeCcCcchHHHHH---HHHHhcCCCCcEEEEEEcCCcc-HHHHHHHHhhC--CCc
Q 027826 24 SHESGVAELVSAMAAGWDA--RLIVETWSHGGATATSV---GLAVASRHTGGRHVCLVPDERS-RSEYVHALGEA--GFS 95 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~a--k~ILEiGt~~GyiGsai---glA~a~~~~~G~vitt~e~~~~-~~~~a~~~~~a--gl~ 95 (218)
..+|.+-..=..|+..++- ..++-.=||+|= |-. |++.++.+ ||+ ||+-.-.-+ -.+..+.+.++ +..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGK--TEMif~~i~~al~~-G~~-vciASPRvDVclEl~~Rlk~aF~~~~ 172 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGK--TEMIFQGIEQALNQ-GGR-VCIASPRVDVCLELYPRLKQAFSNCD 172 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCc--hhhhHHHHHHHHhc-CCe-EEEecCcccchHHHHHHHHHhhccCC
Confidence 3556665555566655433 355565678885 332 47777665 788 665322111 23444555433 344
Q ss_pred eEEEEcCCCchhhcCC---------C----CCccEEEEe---CCccCcHHHHHHh
Q 027826 96 PQVITGEADDEELMDG---------L----VDIDFLVVD---SRRKDFARVLRLA 134 (218)
Q Consensus 96 i~~i~GdA~~~e~L~~---------l----~~fDfVFID---a~K~~Y~~~~~~~ 134 (218)
|.+.+||. ...... | +.||++||| |-+-.--..++++
T Consensus 173 I~~Lyg~S--~~~fr~plvVaTtHQLlrFk~aFD~liIDEVDAFP~~~d~~L~~A 225 (441)
T COG4098 173 IDLLYGDS--DSYFRAPLVVATTHQLLRFKQAFDLLIIDEVDAFPFSDDQSLQYA 225 (441)
T ss_pred eeeEecCC--chhccccEEEEehHHHHHHHhhccEEEEeccccccccCCHHHHHH
Confidence 89999998 544332 1 389999998 3332333445554
No 470
>PRK08278 short chain dehydrogenase; Provisional
Probab=42.13 E-value=1.3e+02 Score=25.64 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=43.8
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCcc--------HHHHHHHHhhCCCceEEEEcCCCchhhcCC--
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERS--------RSEYVHALGEAGFSPQVITGEADDEELMDG-- 111 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~--------~~~~a~~~~~agl~i~~i~GdA~~~e~L~~-- 111 (218)
-|++|=.|.+.| ||..++-..+ ..|.+++.+ ..+.+ ....++.+...+-.+.++.+|.+..+.+.+
T Consensus 6 ~k~vlItGas~g-IG~~ia~~l~--~~G~~V~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 81 (273)
T PRK08278 6 GKTLFITGASRG-IGLAIALRAA--RDGANIVIA-AKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAV 81 (273)
T ss_pred CCEEEEECCCch-HHHHHHHHHH--HCCCEEEEE-ecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 478888888777 6888663333 335565443 23221 122233344445456777788744433332
Q ss_pred ------CCCccEEEEeCC
Q 027826 112 ------LVDIDFLVVDSR 123 (218)
Q Consensus 112 ------l~~fDfVFIDa~ 123 (218)
+..+|.+|.-|.
T Consensus 82 ~~~~~~~g~id~li~~ag 99 (273)
T PRK08278 82 AKAVERFGGIDICVNNAS 99 (273)
T ss_pred HHHHHHhCCCCEEEECCC
Confidence 237899988765
No 471
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=42.07 E-value=71 Score=30.45 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=50.7
Q ss_pred CCeEEEeC-cCcchHHHHHH--HHHhcC-CCCcEEEEEEcCCccHHHHHH---HH-hhCCCceEEEEcCCCchhhcC---
Q 027826 42 ARLIVETW-SHGGATATSVG--LAVASR-HTGGRHVCLVPDERSRSEYVH---AL-GEAGFSPQVITGEADDEELMD--- 110 (218)
Q Consensus 42 ak~ILEiG-t~~GyiGsaig--lA~a~~-~~~G~vitt~e~~~~~~~~a~---~~-~~agl~i~~i~GdA~~~e~L~--- 110 (218)
|..|+=+| +|+|= |++. ||..+. ..+-+ |..+..|..+..+.. .+ .+.|+.+.......++.++..
T Consensus 99 p~vi~~vG~~GsGK--TTtaakLA~~l~~~~g~k-V~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 99 PTVILMVGLQGSGK--TTTCGKLAYYLKKKQGKK-VLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CEEEEEECCCCCcH--HHHHHHHHHHHHHhCCCe-EEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 34455555 34555 4443 777653 22334 444455544433332 23 356655322211111233332
Q ss_pred -CC--CCccEEEEeCCccCc--HHHHHHh----c-CCCCCeEEEEeCC
Q 027826 111 -GL--VDIDFLVVDSRRKDF--ARVLRLA----N-LSSRGAVLVCKNA 148 (218)
Q Consensus 111 -~l--~~fDfVFIDa~K~~Y--~~~~~~~----~-L~~~GgvIV~DNv 148 (218)
.+ ..||+|+||..-... ...++.+ . +.|.+-++|+|..
T Consensus 176 ~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~ 223 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAM 223 (428)
T ss_pred HHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEecc
Confidence 22 379999999986433 2234333 2 3365667777765
No 472
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=41.81 E-value=68 Score=25.21 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=36.3
Q ss_pred HHHhhCCCceEEEEcCCCchhhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEe
Q 027826 87 HALGEAGFSPQVITGEADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 87 ~~~~~agl~i~~i~GdA~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
+.+.+.|+.++++.-+. .+.+||+|++-.--..-.+..+.+ .-...||.+|+-
T Consensus 33 ~~l~~~gi~~d~v~~~~-------~l~~y~~vi~P~~~~~~~~~~~~l~~~v~~GG~li~~ 86 (154)
T cd03143 33 RALRELGIPVDVVPPDA-------DLSGYKLVVLPDLYLLSDATAAALRAYVENGGTLVAG 86 (154)
T ss_pred HHHHHCCCCEEEECCCC-------CcccCCEEEECchhcCCHHHHHHHHHHHHCCCEEEEe
Confidence 45568999888886333 245899999976655556666666 444458888874
No 473
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=41.76 E-value=35 Score=28.69 Aligned_cols=53 Identities=21% Similarity=0.226 Sum_probs=28.8
Q ss_pred HHHhhCCCceEEEEcCCCchhhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEe
Q 027826 87 HALGEAGFSPQVITGEADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 87 ~~~~~agl~i~~i~GdA~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
+.+.+.|+.++|+.-+. .|..|.+|++-+-.-.-++..+.+ .-.+.||.+|+.
T Consensus 37 ~al~~~gi~vDvv~~~~-------dL~~Ykllv~P~~~~l~~~~~~~L~~yV~~GG~li~~ 90 (207)
T PF08532_consen 37 RALRELGIPVDVVSPDD-------DLSGYKLLVLPSLYILSPEFAERLRAYVENGGTLILT 90 (207)
T ss_dssp HHHHTTT--EEEE-TTS---------TT-SEEEES--SC--HHH---HHHHHT-SS-EEE-
T ss_pred HHHHHcCCceEEecCcC-------CcccCcEEEEeeEEEEChHHHHHHHHHHHCCCEEEEE
Confidence 34568999999997665 466899999999877778887777 555569988874
No 474
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=41.59 E-value=1.4e+02 Score=26.50 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=22.3
Q ss_pred CCCccEEEEeCCccCcHHHHHHh-cCCCCCe-EEEEeCCC
Q 027826 112 LVDIDFLVVDSRRKDFARVLRLA-NLSSRGA-VLVCKNAY 149 (218)
Q Consensus 112 l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~Gg-vIV~DNvl 149 (218)
+++||+||+=..-.+-.+.++.+ .+..+++ +|..=|=+
T Consensus 68 ~~~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv 107 (305)
T PRK05708 68 AEPIHRLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGL 107 (305)
T ss_pred ccccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCC
Confidence 34899999976544445666666 4443355 44454443
No 475
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=41.56 E-value=2.4e+02 Score=25.01 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=43.5
Q ss_pred CCCeEEEeCcCcchHHHHHH-HHHhcCCCCcEEEEEEcC--CccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCCCccE
Q 027826 41 DARLIVETWSHGGATATSVG-LAVASRHTGGRHVCLVPD--ERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDF 117 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaig-lA~a~~~~~G~vitt~e~--~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~~fDf 117 (218)
.-++||=+|+ |-+|.... +|+++ +.+++.+... ++++.+.+ .+.|... +...+.+..+ ......+|.
T Consensus 172 ~g~~vlI~G~--G~vG~~a~q~ak~~---G~~vi~~~~~~~~~~~~~~~---~~~Ga~~-v~~~~~~~~~-~~~~~~~d~ 241 (355)
T cd08230 172 NPRRALVLGA--GPIGLLAALLLRLR---GFEVYVLNRRDPPDPKADIV---EELGATY-VNSSKTPVAE-VKLVGEFDL 241 (355)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHH---HHcCCEE-ecCCccchhh-hhhcCCCCE
Confidence 3467887775 44555543 56554 4465544322 33333322 3556541 2111111122 112237896
Q ss_pred EEEeCCccCcHHHHHHh-cCCCCCeEEEE
Q 027826 118 LVVDSRRKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 118 VFIDa~K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
| +|+-- -...++.+ .++++||.++.
T Consensus 242 v-id~~g--~~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 242 I-IEATG--VPPLAFEALPALAPNGVVIL 267 (355)
T ss_pred E-EECcC--CHHHHHHHHHHccCCcEEEE
Confidence 5 46652 23355555 55555777764
No 476
>PRK06128 oxidoreductase; Provisional
Probab=41.37 E-value=1.1e+02 Score=26.64 Aligned_cols=79 Identities=20% Similarity=0.234 Sum_probs=44.5
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCcc---HHHHHHHHhhCCCceEEEEcCCCchhhcCC------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERS---RSEYVHALGEAGFSPQVITGEADDEELMDG------ 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~---~~~~a~~~~~agl~i~~i~GdA~~~e~L~~------ 111 (218)
.-|+||=.|.+.| ||.++....+ ..|.+++.+. .+++ .....+.+...|-.+.++.+|..+.+.+..
T Consensus 54 ~~k~vlITGas~g-IG~~~a~~l~--~~G~~V~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 54 QGRKALITGADSG-IGRATAIAFA--REGADIALNY-LPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred CCCEEEEecCCCc-HHHHHHHHHH--HcCCEEEEEe-CCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 3478999998777 7888653333 3355654332 2221 122233344556557778888733333322
Q ss_pred --CCCccEEEEeCC
Q 027826 112 --LVDIDFLVVDSR 123 (218)
Q Consensus 112 --l~~fDfVFIDa~ 123 (218)
+..+|.++.-|.
T Consensus 130 ~~~g~iD~lV~nAg 143 (300)
T PRK06128 130 KELGGLDILVNIAG 143 (300)
T ss_pred HHhCCCCEEEECCc
Confidence 347899987764
No 477
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=41.32 E-value=1.2e+02 Score=25.29 Aligned_cols=77 Identities=13% Similarity=0.210 Sum_probs=42.4
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcCC--------C
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMDG--------L 112 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~~--------l 112 (218)
-+++|=.|...| +|+.+. ..+.+.|.+++.+ ..+++. .+..+.+...+-.+.++.+|.++.+.+.. .
T Consensus 7 ~~~vlItGasg~-iG~~la--~~l~~~G~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 7 GKTAVVTGAASG-IGKEIA--LELARAGAAVAIA-DLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred CCEEEEECCCCh-HHHHHH--HHHHHCCCeEEEE-eCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 477886666544 788855 3333335565544 454433 33344454555457778888744443332 2
Q ss_pred CCccEEEEeC
Q 027826 113 VDIDFLVVDS 122 (218)
Q Consensus 113 ~~fDfVFIDa 122 (218)
.+.|.|+-=+
T Consensus 83 ~~~d~vi~~a 92 (262)
T PRK13394 83 GSVDILVSNA 92 (262)
T ss_pred CCCCEEEECC
Confidence 3578775544
No 478
>PRK07774 short chain dehydrogenase; Provisional
Probab=41.29 E-value=1.2e+02 Score=25.00 Aligned_cols=77 Identities=16% Similarity=0.211 Sum_probs=40.7
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcCC--------CC
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMDG--------LV 113 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~~--------l~ 113 (218)
+++|=.|.+.| +|..+. +.+...|-+++. ...+++. ....+.+...+-.+..+..|.++.+.+.. ++
T Consensus 7 k~vlItGasg~-iG~~la--~~l~~~g~~vi~-~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 7 KVAIVTGAAGG-IGQAYA--EALAREGASVVV-ADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CEEEEECCCch-HHHHHH--HHHHHCCCEEEE-EeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 67887776555 688855 333333556444 4444432 22233333333335666777733333322 23
Q ss_pred CccEEEEeCC
Q 027826 114 DIDFLVVDSR 123 (218)
Q Consensus 114 ~fDfVFIDa~ 123 (218)
++|.||.-|.
T Consensus 83 ~id~vi~~ag 92 (250)
T PRK07774 83 GIDYLVNNAA 92 (250)
T ss_pred CCCEEEECCC
Confidence 6899997554
No 479
>PLN02214 cinnamoyl-CoA reductase
Probab=41.27 E-value=89 Score=27.99 Aligned_cols=77 Identities=12% Similarity=0.033 Sum_probs=40.0
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHH--HHHHhhCCCceEEEEcCCCchhhcCC-CCCccEEE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY--VHALGEAGFSPQVITGEADDEELMDG-LVDIDFLV 119 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~--a~~~~~agl~i~~i~GdA~~~e~L~~-l~~fDfVF 119 (218)
++||=.|. +|+||+.+. ..+.+.|-+++.+ ..+++.... .+.+...+-.++++.+|.++.+.+.. +..+|.||
T Consensus 11 ~~vlVTGa-tGfIG~~l~--~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 11 KTVCVTGA-GGYIASWIV--KILLERGYTVKGT-VRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CEEEEECC-CcHHHHHHH--HHHHHCcCEEEEE-eCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 46776655 688888854 4443334464443 343322111 11222111127888899833333333 34789888
Q ss_pred EeCC
Q 027826 120 VDSR 123 (218)
Q Consensus 120 IDa~ 123 (218)
.=|.
T Consensus 87 h~A~ 90 (342)
T PLN02214 87 HTAS 90 (342)
T ss_pred EecC
Confidence 7764
No 480
>PRK07062 short chain dehydrogenase; Provisional
Probab=41.12 E-value=1.1e+02 Score=25.78 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=43.4
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhC--CCceEEEEcCCCchhhcCC------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEA--GFSPQVITGEADDEELMDG------ 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~a--gl~i~~i~GdA~~~e~L~~------ 111 (218)
.-|.+|=.|.+.| ||.+++ +.+...|.+++.+ ..+++. ....+.+.+. +..+.++..|.++.+.+.+
T Consensus 7 ~~k~~lItGas~g-iG~~ia--~~l~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (265)
T PRK07062 7 EGRVAVVTGGSSG-IGLATV--ELLLEAGASVAIC-GRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVE 82 (265)
T ss_pred CCCEEEEeCCCch-HHHHHH--HHHHHCCCeEEEE-eCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 3478888888877 688865 3333336675544 444433 3333444322 2236667777733333322
Q ss_pred --CCCccEEEEeCC
Q 027826 112 --LVDIDFLVVDSR 123 (218)
Q Consensus 112 --l~~fDfVFIDa~ 123 (218)
+.++|.++.-|.
T Consensus 83 ~~~g~id~li~~Ag 96 (265)
T PRK07062 83 ARFGGVDMLVNNAG 96 (265)
T ss_pred HhcCCCCEEEECCC
Confidence 347898877663
No 481
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=41.01 E-value=1.6e+02 Score=24.22 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=45.1
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcCC--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~~-------- 111 (218)
+.+++|=.|.+.| +|++++ +.+...+.+++.....+++. ....+.+...+.++.++..|..+.+.+.+
T Consensus 5 ~~~~~lItG~s~~-iG~~la--~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 5 NGKVAIVTGGAKG-IGKAIT--VALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCCEEEEECCCCH-HHHHHH--HHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4588999997666 788865 32223356654433333322 22223334445457778888743333322
Q ss_pred CCCccEEEEeCCc
Q 027826 112 LVDIDFLVVDSRR 124 (218)
Q Consensus 112 l~~fDfVFIDa~K 124 (218)
+++.|.||.=|..
T Consensus 82 ~~~id~vi~~ag~ 94 (247)
T PRK12935 82 FGKVDILVNNAGI 94 (247)
T ss_pred cCCCCEEEECCCC
Confidence 2468999876654
No 482
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=40.91 E-value=1e+02 Score=25.90 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=44.2
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCC--------C
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDG--------L 112 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~--------l 112 (218)
.-|.+|=.|.+.| ||.+++-+.+ ..|.+++.+ ..++ .....+.....+-.+.++..|.+..+.+.+ +
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~--~~G~~vv~~-~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 7 NGKVAIITGCNTG-LGQGMAIGLA--KAGADIVGV-GVAE-APETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVM 81 (251)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHH--HCCCEEEEe-cCch-HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 4588999998888 6888653333 336675443 3332 222333344445456777777744433332 2
Q ss_pred CCccEEEEeCC
Q 027826 113 VDIDFLVVDSR 123 (218)
Q Consensus 113 ~~fDfVFIDa~ 123 (218)
.++|.++.-|.
T Consensus 82 g~iD~lv~~ag 92 (251)
T PRK12481 82 GHIDILINNAG 92 (251)
T ss_pred CCCCEEEECCC
Confidence 36888776553
No 483
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=40.90 E-value=2.7e+02 Score=24.97 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=39.3
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCc----eEEEE-cCCCchhhcCCCCCccE
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS----PQVIT-GEADDEELMDGLVDIDF 117 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~----i~~i~-GdA~~~e~L~~l~~fDf 117 (218)
+|--||+ |+.|++++.+.|.... +. |+.++.+++..... ..+.+.+.. .++.. +|. .+ +..-|+
T Consensus 3 KV~VIGa--G~vG~~iA~~la~~g~-~~-VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~--~~----~~~aDi 72 (305)
T TIGR01763 3 KISVIGA--GFVGATTAFRLAEKEL-AD-LVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNY--AD----TANSDI 72 (305)
T ss_pred EEEEECc--CHHHHHHHHHHHHcCC-Ce-EEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCH--HH----hCCCCE
Confidence 5677886 8899998876665432 35 44445555543322 122222221 23432 343 22 346799
Q ss_pred EEEeCCc
Q 027826 118 LVVDSRR 124 (218)
Q Consensus 118 VFIDa~K 124 (218)
|||=+..
T Consensus 73 VIitag~ 79 (305)
T TIGR01763 73 VVITAGL 79 (305)
T ss_pred EEEcCCC
Confidence 9998874
No 484
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=40.66 E-value=1.2e+02 Score=25.05 Aligned_cols=79 Identities=22% Similarity=0.245 Sum_probs=44.0
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCceEEEEcCCCchhhcCC--------C
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFSPQVITGEADDEELMDG--------L 112 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~i~~i~GdA~~~e~L~~--------l 112 (218)
-|.+|=.|++.| +|.++. +.+.+.|.+++.....++.. ....+.+...+..+..+.+|.++.+.+.. +
T Consensus 3 ~k~~lVtG~s~g-iG~~~a--~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (246)
T PRK12938 3 QRIAYVTGGMGG-IGTSIC--QRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEV 79 (246)
T ss_pred CCEEEEECCCCh-HHHHHH--HHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 367788888777 688855 33333356755433333222 22223334456557777888844433322 2
Q ss_pred CCccEEEEeCC
Q 027826 113 VDIDFLVVDSR 123 (218)
Q Consensus 113 ~~fDfVFIDa~ 123 (218)
.+.|.++.-|.
T Consensus 80 ~~id~li~~ag 90 (246)
T PRK12938 80 GEIDVLVNNAG 90 (246)
T ss_pred CCCCEEEECCC
Confidence 47898887664
No 485
>PRK01172 ski2-like helicase; Provisional
Probab=40.63 E-value=2.1e+02 Score=28.40 Aligned_cols=103 Identities=13% Similarity=0.191 Sum_probs=57.8
Q ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHH---HHHhcCCCCcEEEEEEcCCccHHHHHHH
Q 027826 12 KAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG---LAVASRHTGGRHVCLVPDERSRSEYVHA 88 (218)
Q Consensus 12 ~ayl~~l~~~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaig---lA~a~~~~~G~vitt~e~~~~~~~~a~~ 88 (218)
..+++.+....-...|-+.+.+..+. .+---++-.-||+|= |.++ +...... +++.+.+.+...-..+..+.
T Consensus 10 ~~~~~~~~~~~~~l~~~Q~~ai~~l~--~~~nvlv~apTGSGK--Tl~a~lail~~l~~-~~k~v~i~P~raLa~q~~~~ 84 (674)
T PRK01172 10 DEFLNLFTGNDFELYDHQRMAIEQLR--KGENVIVSVPTAAGK--TLIAYSAIYETFLA-GLKSIYIVPLRSLAMEKYEE 84 (674)
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHh--cCCcEEEECCCCchH--HHHHHHHHHHHHHh-CCcEEEEechHHHHHHHHHH
Confidence 34444444433456788888888863 344578888899998 7765 3333332 56756655443222222333
Q ss_pred Hh---hCCCceEEEEcCCCchhhcCCCCCccEEEEe
Q 027826 89 LG---EAGFSPQVITGEADDEELMDGLVDIDFLVVD 121 (218)
Q Consensus 89 ~~---~agl~i~~i~GdA~~~e~L~~l~~fDfVFID 121 (218)
+. ..|+.+....|+. ......+...|+++.-
T Consensus 85 ~~~l~~~g~~v~~~~G~~--~~~~~~~~~~dIiv~T 118 (674)
T PRK01172 85 LSRLRSLGMRVKISIGDY--DDPPDFIKRYDVVILT 118 (674)
T ss_pred HHHHhhcCCeEEEEeCCC--CCChhhhccCCEEEEC
Confidence 33 3466677777877 3322223456766654
No 486
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=40.47 E-value=1.3e+02 Score=25.99 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=42.8
Q ss_pred cCCCeEEEeCcCcchHHHH-HHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCC-CchhhcCCC--CCc
Q 027826 40 WDARLIVETWSHGGATATS-VGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEA-DDEELMDGL--VDI 115 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsa-iglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA-~~~e~L~~l--~~f 115 (218)
..-.+||-.|+ |.+|.+ +-+|.+. +.+++.+ ..+++..+.+ .+.|+. .++.... +..+.+... ..+
T Consensus 164 ~~~~~vli~g~--g~vG~~~~~la~~~---G~~V~~~-~~s~~~~~~~---~~~g~~-~~~~~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 164 KPGETVLVIGL--GGLGLNAVQIAKAM---GAAVIAV-DIKEEKLELA---KELGAD-EVLNSLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCEEEEECC--cHHHHHHHHHHHHc---CCEEEEE-cCCHHHHHHH---HHhCCC-EEEcCCCcCHHHHHHHhcCCCc
Confidence 34457777664 333333 3355543 4564444 4544433322 345553 2222111 012333222 279
Q ss_pred cEEEEeCCccCcHHHHHHh-cCCCCCeEEEE
Q 027826 116 DFLVVDSRRKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 116 DfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
|. ++|+-- -...++.+ +.++++|.++.
T Consensus 234 D~-vid~~g--~~~~~~~~~~~l~~~G~~v~ 261 (338)
T cd08254 234 DV-IFDFVG--TQPTFEDAQKAVKPGGRIVV 261 (338)
T ss_pred eE-EEECCC--CHHHHHHHHHHhhcCCEEEE
Confidence 95 467642 23456665 44444676653
No 487
>PRK11524 putative methyltransferase; Provisional
Probab=40.38 E-value=48 Score=29.30 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCC--CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH
Q 027826 30 AELVSAMAAGWDA--RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH 87 (218)
Q Consensus 30 g~fL~~L~~~~~a--k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~ 87 (218)
-+++..|+++.-. -.||+ .|.| +|||.--|. .. ||.-.-+|.+++..+.++
T Consensus 195 ~~L~erlI~~~S~~GD~VLD--PF~G-SGTT~~AA~---~l-gR~~IG~Ei~~~Y~~~a~ 247 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLD--PFAG-SFTTGAVAK---AS-GRKFIGIEINSEYIKMGL 247 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEE--CCCC-CcHHHHHHH---Hc-CCCEEEEeCCHHHHHHHH
Confidence 5788888887643 35888 8888 577732222 22 343555688888776653
No 488
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=40.34 E-value=92 Score=31.02 Aligned_cols=80 Identities=14% Similarity=0.141 Sum_probs=44.2
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhh-----CCC----ceEEEEcCCCchhhc
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGE-----AGF----SPQVITGEADDEELM 109 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~-----agl----~i~~i~GdA~~~e~L 109 (218)
+.-+.||=+|.. |+||..+. ..+...|-+ |....++++... ..+.+.+ .|. .++++.||.++.+.+
T Consensus 78 ~~gKvVLVTGAT-GgIG~aLA--r~LLk~G~~-Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 78 KDEDLAFVAGAT-GKVGSRTV--RELLKLGFR-VRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred CCCCEEEEECCC-CHHHHHHH--HHHHHCCCe-EEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 355678877765 55787754 333333556 444445554332 2222221 221 278899999444444
Q ss_pred C-CCCCccEEEEeCC
Q 027826 110 D-GLVDIDFLVVDSR 123 (218)
Q Consensus 110 ~-~l~~fDfVFIDa~ 123 (218)
. .+..+|.||.-+.
T Consensus 154 ~~aLggiDiVVn~AG 168 (576)
T PLN03209 154 GPALGNASVVICCIG 168 (576)
T ss_pred HHHhcCCCEEEEccc
Confidence 3 3568898887653
No 489
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=40.14 E-value=41 Score=26.99 Aligned_cols=85 Identities=14% Similarity=0.077 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcC
Q 027826 31 ELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMD 110 (218)
Q Consensus 31 ~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~ 110 (218)
+|-..+++..+..+|+|||-|.=. . .|.++.+.|-.+++| +.++. .+ ..| ++++.-|. .+ |
T Consensus 3 ~~a~~ia~~~~~~kiVEVGiG~~~---~--vA~~L~~~G~dV~~t-Di~~~---~a----~~g--~~~v~DDi--f~--P 63 (127)
T PF03686_consen 3 DFAEYIARLNNYGKIVEVGIGFNP---E--VAKKLKERGFDVIAT-DINPR---KA----PEG--VNFVVDDI--FN--P 63 (127)
T ss_dssp HHHHHHHHHS-SSEEEEET-TT-----H--HHHHHHHHS-EEEEE--SS-S-----------S--TTEE---S--SS---
T ss_pred hHHHHHHHhCCCCcEEEECcCCCH---H--HHHHHHHcCCcEEEE-ECccc---cc----ccC--cceeeecc--cC--C
Confidence 455667778899999999876443 2 344444434344444 56554 11 133 45666666 33 3
Q ss_pred CC---CCccEEE-EeCCccCcHHHHHHh
Q 027826 111 GL---VDIDFLV-VDSRRKDFARVLRLA 134 (218)
Q Consensus 111 ~l---~~fDfVF-IDa~K~~Y~~~~~~~ 134 (218)
++ ...|+|+ |-.-.+..+..++++
T Consensus 64 ~l~iY~~a~lIYSiRPP~El~~~il~lA 91 (127)
T PF03686_consen 64 NLEIYEGADLIYSIRPPPELQPPILELA 91 (127)
T ss_dssp -HHHHTTEEEEEEES--TTSHHHHHHHH
T ss_pred CHHHhcCCcEEEEeCCChHHhHHHHHHH
Confidence 43 2567666 334455566666665
No 490
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=39.68 E-value=2e+02 Score=26.79 Aligned_cols=123 Identities=16% Similarity=0.068 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHH-HHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGL-AVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaigl-A~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~i~~i~G 101 (218)
.-.|...+|-..|++..++...+=+ ++|. .+|.+ ..++..+|.++++.-..-.......+. ....|+.+..+..
T Consensus 57 ~~~p~~~~Le~~lA~l~g~~~~v~~--~sG~--~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~ 132 (405)
T PRK08776 57 SGNPTRDLLGEALAELEGGAGGVIT--ATGM--GAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADL 132 (405)
T ss_pred CCChHHHHHHHHHHHHhCCCceEEE--cCHH--HHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC
Confidence 5667888888889988888766543 4444 44442 223334456655432111111111222 2356665333322
Q ss_pred CCCchhhcC-CCC-CccEEEEeCC--ccCcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMD-GLV-DIDFLVVDSR--RKDFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~-~l~-~fDfVFIDa~--K~~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+- .+.|. .+. .-.+||+..- .-....-++.+ .+. +.|.+||+||+...+
T Consensus 133 ~d--~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~ 187 (405)
T PRK08776 133 TD--PRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP 187 (405)
T ss_pred CC--HHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 21 33333 343 5689998633 22222222333 333 448899999998654
No 491
>PRK08628 short chain dehydrogenase; Provisional
Probab=39.68 E-value=1.1e+02 Score=25.49 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=43.4
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCC--------CC
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDG--------LV 113 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~--------l~ 113 (218)
-+.||=+|.+.| ||..+. ..+.+.+.+++.+ ..++......+.+...+-.+.++..|.+..+.+.. +.
T Consensus 7 ~~~ilItGasgg-iG~~la--~~l~~~G~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK08628 7 DKVVIVTGGASG-IGAAIS--LRLAEEGAIPVIF-GRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFG 82 (258)
T ss_pred CCEEEEeCCCCh-HHHHHH--HHHHHcCCcEEEE-cCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 367888887766 677754 3333335564443 44443333334444455557777788743333322 23
Q ss_pred CccEEEEeCC
Q 027826 114 DIDFLVVDSR 123 (218)
Q Consensus 114 ~fDfVFIDa~ 123 (218)
++|.|+.=|.
T Consensus 83 ~id~vi~~ag 92 (258)
T PRK08628 83 RIDGLVNNAG 92 (258)
T ss_pred CCCEEEECCc
Confidence 6788776654
No 492
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.62 E-value=40 Score=31.61 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=40.6
Q ss_pred eEEEeC-cCcchHHHHHH--HHHhcC-CCCc-EEEEEEcCCccHHHH---HHHH-hhCCCceEEEEcCCCchhhcCCCCC
Q 027826 44 LIVETW-SHGGATATSVG--LAVASR-HTGG-RHVCLVPDERSRSEY---VHAL-GEAGFSPQVITGEADDEELMDGLVD 114 (218)
Q Consensus 44 ~ILEiG-t~~GyiGsaig--lA~a~~-~~~G-~vitt~e~~~~~~~~---a~~~-~~agl~i~~i~GdA~~~e~L~~l~~ 114 (218)
.++=+| ||+|= |++. ||..+. ..+. + |..+..+..+... .+.+ ...|+.+.......++...+.++..
T Consensus 139 ii~lvGptGvGK--TTtiakLA~~~~~~~G~~~-V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 139 VFALMGPTGVGK--TTTTAKLAARCVMRFGASK-VALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred EEEEECCCCCCH--HHHHHHHHHHHHHhcCCCe-EEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 344344 56665 4443 554432 2132 4 4333344433222 2333 3577775544332223566777788
Q ss_pred ccEEEEeCCc
Q 027826 115 IDFLVVDSRR 124 (218)
Q Consensus 115 fDfVFIDa~K 124 (218)
+|+||||..=
T Consensus 216 ~DlVLIDTaG 225 (374)
T PRK14722 216 KHMVLIDTIG 225 (374)
T ss_pred CCEEEEcCCC
Confidence 9999999873
No 493
>PRK08862 short chain dehydrogenase; Provisional
Probab=39.56 E-value=1.1e+02 Score=25.66 Aligned_cols=77 Identities=10% Similarity=0.015 Sum_probs=41.1
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHH-HHHHHHhhCCCceEEEEcCCCchhhcC--------CC
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRS-EYVHALGEAGFSPQVITGEADDEELMD--------GL 112 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~-~~a~~~~~agl~i~~i~GdA~~~e~L~--------~l 112 (218)
-|.+|=.|.+.| ||-+++.. +...|.+++. ...+++.. +..+.+.+.+..+....-|..+.+.++ ++
T Consensus 5 ~k~~lVtGas~G-IG~aia~~--la~~G~~V~~-~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 5 SSIILITSAGSV-LGRTISCH--FARLGATLIL-CDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CeEEEEECCccH-HHHHHHHH--HHHCCCEEEE-EcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 478888899888 57775533 3333667444 44554432 233444444544433333432222232 23
Q ss_pred C-CccEEEEeC
Q 027826 113 V-DIDFLVVDS 122 (218)
Q Consensus 113 ~-~fDfVFIDa 122 (218)
+ .+|.++.-|
T Consensus 81 g~~iD~li~na 91 (227)
T PRK08862 81 NRAPDVLVNNW 91 (227)
T ss_pred CCCCCEEEECC
Confidence 5 688888776
No 494
>PRK10037 cell division protein; Provisional
Probab=39.52 E-value=72 Score=27.30 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=11.3
Q ss_pred CCccEEEEeCCccC
Q 027826 113 VDIDFLVVDSRRKD 126 (218)
Q Consensus 113 ~~fDfVFIDa~K~~ 126 (218)
+.||+|+||+....
T Consensus 116 ~~yD~iiIDtpp~~ 129 (250)
T PRK10037 116 GRYQWILLDLPRGA 129 (250)
T ss_pred CCCCEEEEECCCCc
Confidence 37999999997653
No 495
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=39.10 E-value=1.1e+02 Score=25.68 Aligned_cols=17 Identities=12% Similarity=0.319 Sum_probs=12.8
Q ss_pred CccEEEEeCCccCcHHH
Q 027826 114 DIDFLVVDSRRKDFARV 130 (218)
Q Consensus 114 ~fDfVFIDa~K~~Y~~~ 130 (218)
.||+|+||+....-...
T Consensus 111 ~~D~viiD~p~~~~~~~ 127 (261)
T TIGR01968 111 EFDYVIIDCPAGIESGF 127 (261)
T ss_pred hCCEEEEeCCCCcCHHH
Confidence 79999999986544433
No 496
>PRK07326 short chain dehydrogenase; Provisional
Probab=39.01 E-value=1.4e+02 Score=24.41 Aligned_cols=76 Identities=12% Similarity=0.141 Sum_probs=40.9
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEcCCCchhhcCC--------C
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITGEADDEELMDG--------L 112 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~GdA~~~e~L~~--------l 112 (218)
-+.||=+|.+ |.+|..+....+ ..+-+++. +..+++... ..+.+... ..++++.+|.++.+.+.. +
T Consensus 6 ~~~ilItGat-g~iG~~la~~l~--~~g~~V~~-~~r~~~~~~~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 6 GKVALITGGS-KGIGFAIAEALL--AEGYKVAI-TARDQKELEEAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCEEEEECCC-CcHHHHHHHHHH--HCCCEEEE-eeCCHHHHHHHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3778888864 447888653332 33557444 445554322 23333322 237788888733333322 2
Q ss_pred CCccEEEEeC
Q 027826 113 VDIDFLVVDS 122 (218)
Q Consensus 113 ~~fDfVFIDa 122 (218)
..+|.||.=+
T Consensus 81 ~~~d~vi~~a 90 (237)
T PRK07326 81 GGLDVLIANA 90 (237)
T ss_pred CCCCEEEECC
Confidence 3689888654
No 497
>PF08141 SspH: Small acid-soluble spore protein H family; InterPro: IPR012610 This family consists of the small acid-soluble spore proteins (SASP) of the H type (sspH). SspH are unique to spores of Bacillus subtilis and are expressed only in the forespore compartment during sporulation of this organism. The sspH genes are monocistronic and are recognised by the forespore-specific sigma factor for RNA polymerase - sigma-G. The specific role of this protein is unclear but is thought to play a role in sporulation under conditions different from that of the common laboratory tests of spore properties [].; GO: 0030436 asexual sporulation, 0042601 endospore-forming forespore
Probab=38.76 E-value=13 Score=25.73 Aligned_cols=19 Identities=37% Similarity=0.810 Sum_probs=15.3
Q ss_pred CCCCCceEecccccccccc
Q 027826 197 KGGSRWIKHFDRQSGEEHV 215 (218)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~ 215 (218)
.|.+-||.++|+++|--.|
T Consensus 21 ~G~pV~Ie~vde~~~tA~V 39 (58)
T PF08141_consen 21 NGVPVWIEHVDEENGTARV 39 (58)
T ss_pred CCEEEEEEEEcCCCCeEEE
Confidence 4789999999999886543
No 498
>PRK09186 flagellin modification protein A; Provisional
Probab=38.74 E-value=1.4e+02 Score=24.70 Aligned_cols=77 Identities=19% Similarity=0.184 Sum_probs=42.2
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHH-HHHHHHh-hCCCc-eEEEEcCCCchhhcCCC------
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRS-EYVHALG-EAGFS-PQVITGEADDEELMDGL------ 112 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~-~~a~~~~-~agl~-i~~i~GdA~~~e~L~~l------ 112 (218)
-|+||=.|.+.| ||..++ ..+...+.+++.+ ..+++.. ..++.+. ..+-. +.++.+|.++.+.+..+
T Consensus 4 ~k~vlItGas~g-iG~~~a--~~l~~~g~~v~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (256)
T PRK09186 4 GKTILITGAGGL-IGSALV--KAILEAGGIVIAA-DIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAE 79 (256)
T ss_pred CCEEEEECCCch-HHHHHH--HHHHHCCCEEEEE-ecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHH
Confidence 467888888766 677755 3333335675544 3444332 2333443 22323 66778888433333332
Q ss_pred --CCccEEEEeC
Q 027826 113 --VDIDFLVVDS 122 (218)
Q Consensus 113 --~~fDfVFIDa 122 (218)
.++|.++.-|
T Consensus 80 ~~~~id~vi~~A 91 (256)
T PRK09186 80 KYGKIDGAVNCA 91 (256)
T ss_pred HcCCccEEEECC
Confidence 2589988766
No 499
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=38.69 E-value=55 Score=32.05 Aligned_cols=105 Identities=14% Similarity=0.097 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCC
Q 027826 32 LVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDG 111 (218)
Q Consensus 32 fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~ 111 (218)
++...+.-.+.++|+++.+++|= +|.|+.+..--|..++.... ...-..+.+-|+- =+. =|- .|.+++
T Consensus 356 l~~~~i~~~~iRNVMDMnAg~GG------FAAAL~~~~VWVMNVVP~~~--~ntL~vIydRGLI-G~y-hDW--CE~fsT 423 (506)
T PF03141_consen 356 LLGLAIKWGRIRNVMDMNAGYGG------FAAALIDDPVWVMNVVPVSG--PNTLPVIYDRGLI-GVY-HDW--CEAFST 423 (506)
T ss_pred hhcccccccceeeeeeecccccH------HHHHhccCCceEEEecccCC--CCcchhhhhcccc-hhc-cch--hhccCC
Confidence 44555677789999998777664 78888754433333332211 1111222344442 111 234 667888
Q ss_pred CC-CccEEEEeCCccCcHH------HHHHh-cCCCCCeEEEE-eCC
Q 027826 112 LV-DIDFLVVDSRRKDFAR------VLRLA-NLSSRGAVLVC-KNA 148 (218)
Q Consensus 112 l~-~fDfVFIDa~K~~Y~~------~~~~~-~L~~~GgvIV~-DNv 148 (218)
.+ +||||=-|.--..|.+ .+-.. ++++|||.+++ |++
T Consensus 424 YPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 424 YPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred CCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 87 9999988755555532 11112 66666777776 444
No 500
>PRK12827 short chain dehydrogenase; Provisional
Probab=38.62 E-value=1.3e+02 Score=24.67 Aligned_cols=79 Identities=19% Similarity=0.228 Sum_probs=40.6
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEE---cCCccHH-HHHHHHhhCCCceEEEEcCCCchhhcCC-----
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLV---PDERSRS-EYVHALGEAGFSPQVITGEADDEELMDG----- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~---e~~~~~~-~~a~~~~~agl~i~~i~GdA~~~e~L~~----- 111 (218)
..++||=.|.+.| +|..++ ..+.+.+.+++... ..+++.. .....+...+-.++++.+|.++.+.+..
T Consensus 5 ~~~~ilItGasg~-iG~~la--~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (249)
T PRK12827 5 DSRRVLITGGSGG-LGRAIA--VRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAG 81 (249)
T ss_pred CCCEEEEECCCCh-HHHHHH--HHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 3467887777666 677754 33333345644321 1222221 1223333444457888888843333332
Q ss_pred ---CCCccEEEEeC
Q 027826 112 ---LVDIDFLVVDS 122 (218)
Q Consensus 112 ---l~~fDfVFIDa 122 (218)
..++|.|+.=+
T Consensus 82 ~~~~~~~d~vi~~a 95 (249)
T PRK12827 82 VEEFGRLDILVNNA 95 (249)
T ss_pred HHHhCCCCEEEECC
Confidence 13678877654
Done!