Query 027827
Match_columns 218
No_of_seqs 131 out of 1233
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 15:48:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0406 Glutathione S-transfer 100.0 1.3E-42 2.8E-47 258.7 22.5 213 4-216 10-225 (231)
2 PRK09481 sspA stringent starva 100.0 8.7E-41 1.9E-45 254.2 22.3 197 2-205 9-205 (211)
3 PLN02473 glutathione S-transfe 100.0 8.8E-37 1.9E-41 232.8 19.5 196 2-202 1-211 (214)
4 PRK15113 glutathione S-transfe 100.0 8.1E-36 1.8E-40 227.3 18.9 193 2-205 4-211 (214)
5 PRK13972 GSH-dependent disulfi 100.0 4.8E-36 1E-40 228.8 17.3 191 3-204 1-207 (215)
6 PLN02395 glutathione S-transfe 100.0 1.2E-35 2.5E-40 226.7 19.4 195 1-202 1-210 (215)
7 PRK10542 glutathionine S-trans 100.0 6.7E-36 1.4E-40 225.8 17.5 191 4-203 1-198 (201)
8 PRK10357 putative glutathione 100.0 5.9E-35 1.3E-39 220.8 20.8 193 4-202 1-200 (202)
9 TIGR01262 maiA maleylacetoacet 100.0 4.3E-35 9.4E-40 222.8 19.9 191 5-203 1-205 (210)
10 COG0625 Gst Glutathione S-tran 100.0 5.6E-35 1.2E-39 222.4 19.9 186 4-197 1-199 (211)
11 KOG0868 Glutathione S-transfer 100.0 5.1E-35 1.1E-39 205.6 14.9 193 2-203 4-208 (217)
12 TIGR00862 O-ClC intracellular 100.0 6.6E-34 1.4E-38 217.2 22.0 196 9-215 16-233 (236)
13 PRK11752 putative S-transferas 100.0 3.2E-34 6.8E-39 224.5 19.8 197 3-203 44-259 (264)
14 PLN02378 glutathione S-transfe 100.0 1.4E-32 3.1E-37 209.2 20.2 186 8-207 16-204 (213)
15 PLN02817 glutathione dehydroge 100.0 1.1E-31 2.4E-36 209.2 20.6 187 8-208 69-257 (265)
16 KOG0867 Glutathione S-transfer 100.0 1.6E-31 3.4E-36 204.4 17.5 199 3-206 2-213 (226)
17 PTZ00057 glutathione s-transfe 100.0 2.9E-31 6.4E-36 200.9 18.4 189 3-205 4-202 (205)
18 PRK10387 glutaredoxin 2; Provi 100.0 2.2E-31 4.8E-36 202.4 15.8 179 4-196 1-207 (210)
19 TIGR02182 GRXB Glutaredoxin, G 100.0 2E-29 4.4E-34 191.2 16.6 177 5-196 1-206 (209)
20 KOG1695 Glutathione S-transfer 100.0 5.3E-29 1.1E-33 184.8 16.8 196 1-205 1-203 (206)
21 KOG4420 Uncharacterized conser 100.0 2.4E-28 5.2E-33 181.6 13.6 209 4-215 27-301 (325)
22 KOG1422 Intracellular Cl- chan 99.9 1.5E-23 3.2E-28 151.9 17.2 194 10-212 19-215 (221)
23 PLN02907 glutamate-tRNA ligase 99.9 7.6E-24 1.7E-28 183.8 17.1 158 1-195 1-159 (722)
24 PF13417 GST_N_3: Glutathione 99.9 1.1E-21 2.3E-26 124.8 7.6 74 6-80 1-74 (75)
25 cd03059 GST_N_SspA GST_N famil 99.8 1.9E-20 4.2E-25 118.4 8.4 73 4-77 1-73 (73)
26 cd03052 GST_N_GDAP1 GST_N fami 99.8 2.4E-20 5.1E-25 117.6 7.8 70 4-74 1-73 (73)
27 cd03061 GST_N_CLIC GST_N famil 99.8 3.1E-20 6.6E-25 120.5 7.7 70 10-80 20-89 (91)
28 cd03058 GST_N_Tau GST_N family 99.8 5.5E-20 1.2E-24 116.6 8.3 74 4-77 1-74 (74)
29 KOG4244 Failed axon connection 99.8 1.6E-19 3.6E-24 135.4 12.1 171 11-193 60-273 (281)
30 cd03041 GST_N_2GST_N GST_N fam 99.8 5.2E-20 1.1E-24 117.5 8.0 74 3-77 1-77 (77)
31 cd03045 GST_N_Delta_Epsilon GS 99.8 2E-19 4.4E-24 114.0 8.0 71 4-75 1-74 (74)
32 cd03060 GST_N_Omega_like GST_N 99.8 2.5E-19 5.3E-24 112.6 8.0 68 5-73 2-70 (71)
33 cd03053 GST_N_Phi GST_N family 99.8 3.8E-19 8.2E-24 113.3 8.4 72 4-76 2-76 (76)
34 cd03076 GST_N_Pi GST_N family, 99.8 2.1E-19 4.6E-24 113.5 6.8 73 3-76 1-73 (73)
35 cd03050 GST_N_Theta GST_N fami 99.8 6.7E-19 1.4E-23 112.2 8.6 73 4-77 1-76 (76)
36 cd03185 GST_C_Tau GST_C family 99.8 5.9E-18 1.3E-22 118.3 13.6 124 88-212 2-125 (126)
37 cd03048 GST_N_Ure2p_like GST_N 99.8 7.2E-19 1.6E-23 113.4 8.2 74 3-78 1-80 (81)
38 cd03056 GST_N_4 GST_N family, 99.8 1.3E-18 2.8E-23 109.9 7.8 70 4-74 1-73 (73)
39 cd03037 GST_N_GRX2 GST_N famil 99.8 1.4E-18 3.1E-23 109.2 7.4 70 4-75 1-71 (71)
40 cd03190 GST_C_ECM4_like GST_C 99.8 1.3E-17 2.8E-22 119.0 12.9 130 88-217 3-133 (142)
41 cd03049 GST_N_3 GST_N family, 99.8 1.6E-18 3.5E-23 109.5 7.4 70 4-74 1-73 (73)
42 cd03055 GST_N_Omega GST_N fami 99.8 2E-18 4.4E-23 113.2 8.0 71 3-74 18-89 (89)
43 KOG3029 Glutathione S-transfer 99.8 1.4E-17 3E-22 125.8 13.4 182 3-192 90-354 (370)
44 cd03047 GST_N_2 GST_N family, 99.8 2.1E-18 4.6E-23 109.0 7.7 70 4-74 1-73 (73)
45 cd03039 GST_N_Sigma_like GST_N 99.8 1.5E-18 3.3E-23 109.3 6.8 71 4-75 1-72 (72)
46 cd03044 GST_N_EF1Bgamma GST_N 99.8 2.3E-18 5.1E-23 109.3 7.7 70 5-75 2-74 (75)
47 cd03051 GST_N_GTT2_like GST_N 99.8 2.1E-18 4.5E-23 109.2 7.1 70 4-74 1-74 (74)
48 cd03042 GST_N_Zeta GST_N famil 99.8 4.3E-18 9.3E-23 107.5 7.7 70 4-74 1-73 (73)
49 COG2999 GrxB Glutaredoxin 2 [P 99.8 1.7E-17 3.7E-22 117.3 11.3 180 4-197 1-208 (215)
50 COG0435 ECM4 Predicted glutath 99.8 5.3E-18 1.1E-22 127.9 9.1 211 3-218 51-302 (324)
51 cd03046 GST_N_GTT1_like GST_N 99.8 5.6E-18 1.2E-22 107.9 8.0 73 4-78 1-76 (76)
52 cd03057 GST_N_Beta GST_N famil 99.7 6.4E-18 1.4E-22 107.9 7.9 73 4-78 1-77 (77)
53 PF13409 GST_N_2: Glutathione 99.7 6E-18 1.3E-22 105.8 7.0 65 11-76 1-70 (70)
54 cd03040 GST_N_mPGES2 GST_N fam 99.7 8.5E-18 1.8E-22 107.3 7.4 72 3-77 1-76 (77)
55 KOG2903 Predicted glutathione 99.7 1.2E-17 2.5E-22 124.9 8.7 212 3-218 37-304 (319)
56 cd03080 GST_N_Metaxin_like GST 99.7 1.4E-17 2.9E-22 105.8 7.8 68 3-78 1-75 (75)
57 cd03077 GST_N_Alpha GST_N fami 99.7 4.9E-17 1.1E-21 104.1 8.0 72 3-78 1-77 (79)
58 cd03075 GST_N_Mu GST_N family, 99.7 6.1E-17 1.3E-21 104.4 7.6 72 5-77 2-82 (82)
59 cd03184 GST_C_Omega GST_C fami 99.7 3.7E-16 8.1E-21 108.9 11.7 120 89-212 2-123 (124)
60 cd03186 GST_C_SspA GST_N famil 99.7 3.9E-16 8.5E-21 106.0 11.5 105 88-199 2-106 (107)
61 cd03038 GST_N_etherase_LigE GS 99.7 6.5E-17 1.4E-21 105.0 7.1 67 10-78 14-84 (84)
62 PF02798 GST_N: Glutathione S- 99.7 1.8E-16 3.8E-21 100.8 7.4 72 4-75 1-76 (76)
63 cd03196 GST_C_5 GST_C family, 99.7 7.7E-16 1.7E-20 105.8 11.1 112 85-200 2-115 (115)
64 cd03043 GST_N_1 GST_N family, 99.7 2.8E-16 6E-21 99.1 7.6 66 8-74 6-73 (73)
65 cd03188 GST_C_Beta GST_C famil 99.7 8.6E-16 1.9E-20 105.3 10.5 105 89-200 2-114 (114)
66 cd00570 GST_N_family Glutathio 99.7 3.4E-16 7.4E-21 97.6 7.7 70 4-74 1-71 (71)
67 cd03203 GST_C_Lambda GST_C fam 99.6 4.5E-15 9.7E-20 102.8 12.4 115 86-210 1-119 (120)
68 cd03209 GST_C_Mu GST_C family, 99.6 4.3E-15 9.3E-20 103.1 10.7 112 89-206 2-113 (121)
69 cd03054 GST_N_Metaxin GST_N fa 99.6 1.8E-15 3.9E-20 95.2 7.4 65 4-76 1-72 (72)
70 cd03198 GST_C_CLIC GST_C famil 99.6 1.2E-14 2.6E-19 101.4 11.7 109 100-210 7-132 (134)
71 cd03182 GST_C_GTT2_like GST_C 99.6 1.8E-14 4E-19 99.2 12.1 105 86-196 1-117 (117)
72 cd03191 GST_C_Zeta GST_C famil 99.6 2.7E-14 5.7E-19 99.1 10.2 109 88-203 2-120 (121)
73 cd03177 GST_C_Delta_Epsilon GS 99.6 2.6E-14 5.6E-19 98.7 9.6 106 89-200 2-110 (118)
74 cd03201 GST_C_DHAR GST_C famil 99.6 7.7E-14 1.7E-18 96.6 11.9 104 104-211 14-119 (121)
75 cd03210 GST_C_Pi GST_C family, 99.6 3.9E-14 8.4E-19 99.0 10.5 111 89-206 3-116 (126)
76 cd03189 GST_C_GTT1_like GST_C 99.6 6.6E-14 1.4E-18 96.8 11.3 104 84-194 2-119 (119)
77 cd03178 GST_C_Ure2p_like GST_C 99.6 1.5E-14 3.2E-19 99.1 7.9 106 89-200 1-112 (113)
78 cd03187 GST_C_Phi GST_C family 99.5 5.7E-14 1.2E-18 96.9 10.0 107 89-200 2-118 (118)
79 cd03180 GST_C_2 GST_C family, 99.5 1.2E-13 2.6E-18 94.0 11.3 101 89-196 2-110 (110)
80 cd03181 GST_C_EFB1gamma GST_C 99.5 6.9E-14 1.5E-18 97.2 9.8 111 90-204 2-118 (123)
81 cd03207 GST_C_8 GST_C family, 99.5 2.6E-14 5.6E-19 96.3 6.8 98 97-202 5-102 (103)
82 cd03208 GST_C_Alpha GST_C fami 99.5 1.7E-13 3.6E-18 97.1 11.1 111 89-205 3-118 (137)
83 cd03200 GST_C_JTV1 GST_C famil 99.5 2E-13 4.4E-18 90.6 9.2 95 70-192 1-95 (96)
84 cd03183 GST_C_Theta GST_C fami 99.5 2.6E-13 5.6E-18 94.8 9.4 105 90-200 2-120 (126)
85 PF00043 GST_C: Glutathione S- 99.5 4.4E-13 9.5E-18 88.8 8.7 73 117-194 23-95 (95)
86 cd03206 GST_C_7 GST_C family, 99.4 6.7E-13 1.4E-17 88.9 8.1 70 120-196 31-100 (100)
87 cd03079 GST_N_Metaxin2 GST_N f 99.4 1.1E-12 2.4E-17 81.9 7.0 60 10-76 15-74 (74)
88 PF13410 GST_C_2: Glutathione 99.4 1.1E-12 2.4E-17 81.7 7.0 67 119-189 3-69 (69)
89 cd03195 GST_C_4 GST_C family, 99.4 3.1E-12 6.7E-17 87.7 9.4 104 88-201 2-112 (114)
90 cd03204 GST_C_GDAP1 GST_C fami 99.4 6.5E-12 1.4E-16 85.0 10.6 81 112-196 19-111 (111)
91 KOG3027 Mitochondrial outer me 99.4 2E-11 4.3E-16 88.8 13.4 171 12-193 34-248 (257)
92 cd03179 GST_C_1 GST_C family, 99.4 2.7E-12 5.8E-17 86.6 7.5 96 89-191 2-105 (105)
93 PRK10638 glutaredoxin 3; Provi 99.3 5.3E-12 1.1E-16 81.5 7.6 72 1-73 1-73 (83)
94 cd03192 GST_C_Sigma_like GST_C 99.3 1.9E-11 4.2E-16 82.3 9.5 97 89-190 2-104 (104)
95 TIGR02190 GlrX-dom Glutaredoxi 99.3 9.3E-12 2E-16 79.6 7.4 71 3-74 9-79 (79)
96 KOG3028 Translocase of outer m 99.3 3.1E-10 6.8E-15 87.9 16.7 170 12-192 17-233 (313)
97 PF14497 GST_C_3: Glutathione 99.3 1.3E-11 2.8E-16 82.5 6.3 65 120-192 33-99 (99)
98 cd00299 GST_C_family Glutathio 99.2 4.6E-11 1E-15 79.4 7.8 93 94-190 2-100 (100)
99 cd03194 GST_C_3 GST_C family, 99.2 7.9E-11 1.7E-15 80.7 9.0 71 121-201 40-113 (114)
100 cd03029 GRX_hybridPRX5 Glutare 99.2 9.4E-11 2E-15 73.5 7.8 71 3-74 2-72 (72)
101 cd03078 GST_N_Metaxin1_like GS 99.2 1.1E-10 2.3E-15 73.2 7.3 59 10-76 14-72 (73)
102 cd03193 GST_C_Metaxin GST_C fa 99.2 6.2E-11 1.3E-15 77.4 6.4 70 120-191 17-88 (88)
103 cd03202 GST_C_etherase_LigE GS 99.2 1.3E-10 2.8E-15 80.8 7.9 68 120-192 56-123 (124)
104 cd03205 GST_C_6 GST_C family, 99.1 1.6E-09 3.6E-14 72.1 9.0 65 119-190 34-98 (98)
105 cd03027 GRX_DEP Glutaredoxin ( 99.0 1.7E-09 3.6E-14 68.0 6.7 68 3-71 2-70 (73)
106 PRK10329 glutaredoxin-like pro 99.0 2.7E-09 5.9E-14 68.3 6.6 61 3-64 2-62 (81)
107 cd03211 GST_C_Metaxin2 GST_C f 99.0 2.6E-09 5.7E-14 74.4 7.1 70 119-191 54-126 (126)
108 cd02066 GRX_family Glutaredoxi 98.9 6E-09 1.3E-13 64.8 7.1 69 3-72 1-70 (72)
109 TIGR02196 GlrX_YruB Glutaredox 98.9 6.3E-09 1.4E-13 65.1 6.6 70 3-73 1-73 (74)
110 cd03212 GST_C_Metaxin1_3 GST_C 98.9 1E-08 2.2E-13 72.4 7.8 72 120-192 62-134 (137)
111 cd03418 GRX_GRXb_1_3_like Glut 98.9 1.3E-08 2.8E-13 64.2 7.4 70 3-73 1-72 (75)
112 cd03197 GST_C_mPGES2 GST_C fam 98.9 1.9E-08 4.1E-13 71.1 8.7 115 62-192 30-145 (149)
113 cd02976 NrdH NrdH-redoxin (Nrd 98.9 9E-09 2E-13 64.3 6.3 62 3-65 1-63 (73)
114 COG0695 GrxC Glutaredoxin and 98.8 4.9E-08 1.1E-12 62.3 7.6 69 3-72 2-73 (80)
115 TIGR02194 GlrX_NrdH Glutaredox 98.8 3E-08 6.5E-13 62.1 6.1 57 4-61 1-57 (72)
116 PF14834 GST_C_4: Glutathione 98.8 1.6E-07 3.4E-12 62.6 9.5 105 86-200 1-112 (117)
117 TIGR02200 GlrX_actino Glutared 98.7 4.2E-08 9.2E-13 62.0 6.6 70 3-73 1-75 (77)
118 TIGR02181 GRX_bact Glutaredoxi 98.7 5.2E-08 1.1E-12 62.1 6.9 70 4-74 1-71 (79)
119 PF00462 Glutaredoxin: Glutare 98.6 5.4E-08 1.2E-12 58.6 4.5 59 4-63 1-60 (60)
120 PRK11200 grxA glutaredoxin 1; 98.6 1.9E-07 4E-12 60.4 7.3 75 3-78 2-84 (85)
121 TIGR02189 GlrX-like_plant Glut 98.6 3.6E-07 7.8E-12 60.8 8.4 69 3-72 9-81 (99)
122 cd03419 GRX_GRXh_1_2_like Glut 98.6 3.7E-07 8E-12 58.5 7.9 72 3-75 1-76 (82)
123 PHA03050 glutaredoxin; Provisi 98.6 5.1E-07 1.1E-11 60.9 8.3 69 2-71 13-88 (108)
124 TIGR02183 GRXA Glutaredoxin, G 98.5 6.4E-07 1.4E-11 58.0 7.4 75 4-78 2-83 (86)
125 TIGR00365 monothiol glutaredox 98.4 2E-06 4.4E-11 57.0 7.4 71 3-74 13-89 (97)
126 TIGR02180 GRX_euk Glutaredoxin 98.3 4.8E-06 1E-10 53.4 7.8 71 4-75 1-77 (84)
127 cd03028 GRX_PICOT_like Glutare 98.3 4.9E-06 1.1E-10 54.3 7.3 70 3-73 9-84 (90)
128 PF10568 Tom37: Outer mitochon 98.2 1.1E-05 2.3E-10 50.2 7.2 56 11-74 13-72 (72)
129 PRK12759 bifunctional gluaredo 98.1 1.2E-05 2.6E-10 67.1 8.1 70 1-71 1-79 (410)
130 KOG1147 Glutamyl-tRNA syntheta 98.1 5.1E-06 1.1E-10 69.3 5.3 118 59-200 44-162 (712)
131 PRK10824 glutaredoxin-4; Provi 97.8 0.0001 2.2E-09 50.1 7.1 70 3-73 16-91 (115)
132 cd03031 GRX_GRX_like Glutaredo 97.8 0.00011 2.5E-09 52.2 7.4 69 3-72 1-80 (147)
133 COG4545 Glutaredoxin-related p 97.7 0.00015 3.2E-09 44.3 5.4 64 1-64 1-77 (85)
134 KOG1752 Glutaredoxin and relat 97.6 0.00038 8.2E-09 46.4 6.9 70 3-73 15-88 (104)
135 PF04399 Glutaredoxin2_C: Glut 97.6 0.00046 1E-08 48.0 7.1 68 120-196 57-124 (132)
136 PTZ00062 glutaredoxin; Provisi 97.4 0.00071 1.5E-08 50.9 7.1 69 3-72 114-188 (204)
137 cd02973 TRX_GRX_like Thioredox 97.3 0.0011 2.4E-08 40.4 5.7 59 3-65 2-65 (67)
138 PRK01655 spxA transcriptional 97.3 0.00043 9.2E-09 48.5 4.2 33 4-36 2-34 (131)
139 cd03036 ArsC_like Arsenate Red 97.3 0.00039 8.5E-09 47.2 3.8 34 4-37 1-34 (111)
140 cd03199 GST_C_GRX2 GST_C famil 97.2 0.002 4.4E-08 44.5 7.0 67 121-196 59-125 (128)
141 PRK10026 arsenate reductase; P 97.2 0.00054 1.2E-08 48.3 4.1 34 1-34 1-34 (141)
142 cd03032 ArsC_Spx Arsenate Redu 97.2 0.0009 2E-08 45.7 5.0 33 4-36 2-34 (115)
143 cd02977 ArsC_family Arsenate R 97.2 0.00058 1.3E-08 45.8 3.9 33 4-36 1-33 (105)
144 PRK13344 spxA transcriptional 97.0 0.0018 3.9E-08 45.3 5.2 34 4-37 2-35 (132)
145 PRK12559 transcriptional regul 97.0 0.0017 3.7E-08 45.4 4.9 35 3-37 1-35 (131)
146 TIGR01617 arsC_related transcr 96.8 0.0017 3.7E-08 44.5 3.9 33 4-36 1-33 (117)
147 PF05768 DUF836: Glutaredoxin- 96.6 0.011 2.4E-07 37.6 6.3 55 3-60 1-57 (81)
148 cd03033 ArsC_15kD Arsenate Red 96.6 0.0033 7.1E-08 42.8 3.9 32 4-35 2-33 (113)
149 TIGR00412 redox_disulf_2 small 96.6 0.017 3.6E-07 36.2 6.9 55 4-64 3-61 (76)
150 cd03035 ArsC_Yffb Arsenate Red 96.5 0.0056 1.2E-07 41.1 4.7 33 4-36 1-33 (105)
151 COG1393 ArsC Arsenate reductas 96.4 0.0058 1.3E-07 41.8 4.1 33 3-35 2-34 (117)
152 PRK10853 putative reductase; P 96.3 0.0065 1.4E-07 41.6 4.1 32 4-35 2-33 (118)
153 TIGR01616 nitro_assoc nitrogen 96.1 0.011 2.3E-07 41.0 4.1 33 3-35 2-34 (126)
154 COG0278 Glutaredoxin-related p 95.8 0.036 7.8E-07 36.3 5.3 66 8-74 26-93 (105)
155 cd03034 ArsC_ArsC Arsenate Red 95.5 0.021 4.5E-07 38.8 3.8 31 4-34 1-31 (112)
156 TIGR00411 redox_disulf_1 small 95.4 0.068 1.5E-06 33.6 5.8 57 3-61 2-62 (82)
157 TIGR00014 arsC arsenate reduct 95.4 0.025 5.4E-07 38.5 3.8 32 4-35 1-32 (114)
158 cd03030 GRX_SH3BGR Glutaredoxi 95.4 0.13 2.9E-06 33.5 7.0 67 4-71 2-79 (92)
159 PHA02125 thioredoxin-like prot 95.3 0.08 1.7E-06 33.0 5.7 53 4-61 2-54 (75)
160 cd01659 TRX_superfamily Thiore 95.0 0.065 1.4E-06 31.0 4.5 54 4-58 1-59 (69)
161 PF13192 Thioredoxin_3: Thiore 94.9 0.2 4.3E-06 31.2 6.7 57 4-66 3-63 (76)
162 PF11287 DUF3088: Protein of u 94.8 0.081 1.8E-06 35.4 4.7 68 11-78 23-108 (112)
163 cd03026 AhpF_NTD_C TRX-GRX-lik 94.4 0.087 1.9E-06 34.1 4.1 58 3-64 15-77 (89)
164 PF11801 Tom37_C: Tom37 C-term 92.6 0.35 7.6E-06 35.3 5.2 38 126-163 112-153 (168)
165 PF04908 SH3BGR: SH3-binding, 91.1 0.97 2.1E-05 29.9 5.6 70 1-71 1-85 (99)
166 PF03960 ArsC: ArsC family; I 90.1 0.37 7.9E-06 32.5 3.1 29 7-35 1-29 (110)
167 KOG0911 Glutaredoxin-related p 89.7 0.91 2E-05 34.5 5.1 66 8-74 150-216 (227)
168 PF09635 MetRS-N: MetRS-N bind 87.1 1.1 2.4E-05 30.6 3.7 28 51-78 34-63 (122)
169 PF00085 Thioredoxin: Thioredo 84.5 8.4 0.00018 24.7 7.3 58 4-63 21-84 (103)
170 TIGR01295 PedC_BrcD bacterioci 83.5 7.1 0.00015 26.8 6.5 32 4-35 27-62 (122)
171 KOG1668 Elongation factor 1 be 83.4 0.97 2.1E-05 34.4 2.3 59 128-197 10-68 (231)
172 TIGR03140 AhpF alkyl hydropero 79.0 3.3 7.2E-05 36.0 4.4 62 4-67 121-185 (515)
173 cd02949 TRX_NTR TRX domain, no 78.1 13 0.00028 24.0 6.2 58 4-63 17-80 (97)
174 cd02975 PfPDO_like_N Pyrococcu 77.0 8.2 0.00018 25.9 5.1 53 4-58 25-81 (113)
175 cd02953 DsbDgamma DsbD gamma f 76.8 7.8 0.00017 25.3 4.9 52 4-57 15-77 (104)
176 TIGR03143 AhpF_homolog putativ 76.6 7.1 0.00015 34.3 5.8 57 4-65 480-542 (555)
177 PRK15317 alkyl hydroperoxide r 75.9 3.3 7.1E-05 36.0 3.5 71 4-76 120-197 (517)
178 cd02947 TRX_family TRX family; 75.6 16 0.00034 22.4 6.8 55 4-62 14-75 (93)
179 cd02984 TRX_PICOT TRX domain, 75.0 19 0.0004 22.9 6.5 58 4-63 18-81 (97)
180 KOG3425 Uncharacterized conser 73.8 8.9 0.00019 26.3 4.4 67 8-75 41-121 (128)
181 TIGR02187 GlrX_arch Glutaredox 70.0 16 0.00034 27.7 5.7 53 4-58 137-192 (215)
182 COG3019 Predicted metal-bindin 68.6 20 0.00042 25.3 5.2 71 3-77 27-104 (149)
183 cd02963 TRX_DnaJ TRX domain, D 67.9 31 0.00066 22.9 6.2 57 4-62 28-91 (111)
184 cd02989 Phd_like_TxnDC9 Phosdu 67.6 21 0.00045 23.9 5.3 60 4-65 26-90 (113)
185 cd02951 SoxW SoxW family; SoxW 67.0 23 0.0005 23.9 5.6 17 4-20 18-34 (125)
186 PF11417 Inhibitor_G39P: Loade 66.6 20 0.00044 22.0 4.6 37 65-103 5-43 (71)
187 PRK09381 trxA thioredoxin; Pro 64.7 37 0.00079 22.2 6.9 58 4-63 25-88 (109)
188 TIGR02681 phage_pRha phage reg 64.6 8.3 0.00018 25.9 2.8 26 53-78 2-28 (108)
189 PHA03075 glutaredoxin-like pro 59.5 17 0.00037 24.7 3.5 65 4-76 5-69 (123)
190 PTZ00051 thioredoxin; Provisio 59.3 43 0.00093 21.2 6.0 58 4-63 22-84 (98)
191 PRK10996 thioredoxin 2; Provis 57.5 63 0.0014 22.5 6.7 57 4-63 56-119 (139)
192 cd02959 ERp19 Endoplasmic reti 57.5 45 0.00097 22.5 5.5 60 4-64 23-91 (117)
193 TIGR02187 GlrX_arch Glutaredox 55.5 48 0.001 25.0 6.0 57 4-62 23-89 (215)
194 PF04134 DUF393: Protein of un 54.4 47 0.001 22.0 5.2 69 6-76 1-77 (114)
195 TIGR01068 thioredoxin thioredo 54.1 53 0.0011 20.6 7.7 57 4-62 18-80 (101)
196 PF06110 DUF953: Eukaryotic pr 53.6 11 0.00024 25.8 2.0 60 8-67 34-106 (119)
197 cd03003 PDI_a_ERdj5_N PDIa fam 52.7 57 0.0012 20.9 5.3 56 4-61 22-83 (101)
198 PF00731 AIRC: AIR carboxylase 52.2 28 0.00061 24.9 3.9 33 11-43 12-44 (150)
199 KOG2456 Aldehyde dehydrogenase 50.9 90 0.0019 26.4 7.0 166 7-195 184-361 (477)
200 PF01323 DSBA: DSBA-like thior 49.1 26 0.00057 25.5 3.6 36 3-38 1-41 (193)
201 PF13728 TraF: F plasmid trans 49.1 58 0.0012 24.8 5.5 52 4-57 124-188 (215)
202 cd02993 PDI_a_APS_reductase PD 47.7 78 0.0017 20.7 5.5 53 4-57 25-83 (109)
203 PF15608 PELOTA_1: PELOTA RNA 47.1 42 0.00091 22.2 3.8 32 2-33 56-87 (100)
204 cd04911 ACT_AKiii-YclM-BS_1 AC 46.5 29 0.00064 21.7 2.9 23 13-35 16-38 (76)
205 KOG2824 Glutaredoxin-related p 46.3 37 0.00081 26.8 4.0 58 14-72 149-211 (281)
206 PHA02278 thioredoxin-like prot 45.8 86 0.0019 20.6 6.8 57 5-63 19-85 (103)
207 cd03021 DsbA_GSTK DsbA family, 45.7 30 0.00065 26.0 3.5 35 2-36 1-39 (209)
208 cd02962 TMX2 TMX2 family; comp 44.0 1.2E+02 0.0026 21.7 6.4 60 4-64 51-122 (152)
209 cd02956 ybbN ybbN protein fami 43.6 82 0.0018 19.8 6.4 57 4-62 16-78 (96)
210 cd03020 DsbA_DsbC_DsbG DsbA fa 42.8 29 0.00064 25.7 3.0 21 4-24 81-101 (197)
211 cd02957 Phd_like Phosducin (Ph 42.0 89 0.0019 20.6 5.1 61 4-67 28-93 (113)
212 PF09849 DUF2076: Uncharacteri 41.8 1.7E+02 0.0037 22.9 7.4 65 67-138 7-71 (247)
213 PRK10877 protein disulfide iso 41.7 40 0.00088 26.0 3.7 22 4-25 111-132 (232)
214 PF12290 DUF3802: Protein of u 41.6 61 0.0013 21.9 3.9 84 67-156 9-95 (113)
215 PF13098 Thioredoxin_2: Thiore 41.4 30 0.00066 22.6 2.7 20 4-23 9-28 (112)
216 cd02954 DIM1 Dim1 family; Dim1 39.3 1E+02 0.0022 20.9 4.9 56 6-63 20-81 (114)
217 TIGR01162 purE phosphoribosyla 39.0 53 0.0012 23.7 3.6 32 11-42 10-41 (156)
218 PF14595 Thioredoxin_9: Thiore 38.3 23 0.00049 24.6 1.7 52 4-57 45-102 (129)
219 TIGR01126 pdi_dom protein disu 37.9 40 0.00086 21.4 2.8 52 4-57 17-74 (102)
220 PRK11657 dsbG disulfide isomer 37.9 43 0.00093 26.2 3.3 20 4-23 121-140 (251)
221 PF09413 DUF2007: Domain of un 37.8 32 0.00069 20.4 2.1 33 5-37 2-34 (67)
222 cd02997 PDI_a_PDIR PDIa family 37.5 1.1E+02 0.0023 19.4 6.1 57 4-61 21-86 (104)
223 cd03004 PDI_a_ERdj5_C PDIa fam 37.3 85 0.0018 20.1 4.3 52 4-57 23-78 (104)
224 PRK13947 shikimate kinase; Pro 37.3 51 0.0011 23.6 3.5 32 1-32 1-32 (171)
225 PRK13949 shikimate kinase; Pro 36.1 56 0.0012 23.7 3.5 32 1-32 1-32 (169)
226 PRK09266 hypothetical protein; 36.0 56 0.0012 25.6 3.8 56 21-77 200-258 (266)
227 PF12972 NAGLU_C: Alpha-N-acet 35.5 1.6E+02 0.0034 23.4 6.2 52 108-159 113-175 (267)
228 cd02950 TxlA TRX-like protein 34.9 1.6E+02 0.0034 20.6 6.3 59 4-63 24-90 (142)
229 cd03005 PDI_a_ERp46 PDIa famil 34.8 1.2E+02 0.0026 19.1 5.8 56 4-61 20-84 (102)
230 cd02948 TRX_NDPK TRX domain, T 33.6 1.3E+02 0.0029 19.3 7.9 57 4-63 21-84 (102)
231 TIGR01764 excise DNA binding d 33.5 75 0.0016 16.8 3.1 24 51-74 25-48 (49)
232 cd02972 DsbA_family DsbA famil 33.3 53 0.0012 20.3 2.8 22 4-25 1-22 (98)
233 PTZ00102 disulphide isomerase; 32.8 2.3E+02 0.0051 24.1 7.4 72 4-78 53-139 (477)
234 cd02994 PDI_a_TMX PDIa family, 32.2 1.4E+02 0.0029 19.0 5.2 52 4-57 20-76 (101)
235 cd02999 PDI_a_ERp44_like PDIa 31.9 1.4E+02 0.0031 19.2 5.3 54 4-60 22-82 (100)
236 PF09868 DUF2095: Uncharacteri 31.1 20 0.00043 24.3 0.4 63 15-77 25-91 (128)
237 KOG0190 Protein disulfide isom 30.6 3E+02 0.0066 24.1 7.4 73 4-78 46-133 (493)
238 cd02952 TRP14_like Human TRX-r 30.5 1.8E+02 0.0039 19.8 5.9 55 10-65 38-105 (119)
239 PRK08118 topology modulation p 30.4 79 0.0017 22.8 3.6 31 1-31 1-31 (167)
240 cd02996 PDI_a_ERp44 PDIa famil 30.2 1.2E+02 0.0026 19.6 4.2 56 4-61 22-89 (108)
241 PF11823 DUF3343: Protein of u 30.1 1.1E+02 0.0023 18.6 3.6 32 4-35 3-34 (73)
242 COG0429 Predicted hydrolase of 29.9 1.1E+02 0.0024 25.1 4.5 65 9-83 87-151 (345)
243 PF12728 HTH_17: Helix-turn-he 28.9 1.1E+02 0.0023 16.8 3.3 26 51-76 25-50 (51)
244 COG5515 Uncharacterized conser 27.4 59 0.0013 19.3 1.9 21 4-24 3-27 (70)
245 KOG2501 Thioredoxin, nucleored 27.0 1.6E+02 0.0035 21.3 4.5 30 9-38 42-78 (157)
246 cd02961 PDI_a_family Protein D 25.4 1.7E+02 0.0037 17.9 5.3 52 4-57 19-76 (101)
247 PRK06217 hypothetical protein; 25.2 1E+02 0.0022 22.5 3.4 29 1-29 1-29 (183)
248 cd02985 TRX_CDSP32 TRX family, 25.2 2E+02 0.0043 18.6 6.4 59 4-63 19-84 (103)
249 cd06891 PX_Vps17p The phosphoi 24.7 74 0.0016 22.5 2.4 26 181-210 112-137 (140)
250 cd02998 PDI_a_ERp38 PDIa famil 24.4 90 0.0019 19.8 2.7 53 4-57 22-80 (105)
251 TIGR03759 conj_TIGR03759 integ 24.4 2E+02 0.0044 21.7 4.7 45 13-58 146-193 (200)
252 PTZ00443 Thioredoxin domain-co 24.3 3.3E+02 0.0072 20.9 10.3 72 4-77 56-139 (224)
253 cd03000 PDI_a_TMX3 PDIa family 24.0 2.1E+02 0.0044 18.4 5.3 51 4-57 19-77 (104)
254 PF11732 Thoc2: Transcription- 24.0 1.3E+02 0.0029 18.8 3.2 43 141-191 34-76 (77)
255 COG5494 Predicted thioredoxin/ 23.8 2.7E+02 0.0058 21.4 5.2 70 3-74 12-85 (265)
256 PF10673 DUF2487: Protein of u 23.6 94 0.002 22.1 2.7 46 98-144 9-54 (142)
257 cd03006 PDI_a_EFP1_N PDIa fami 23.5 2.2E+02 0.0048 19.0 4.5 55 4-61 33-95 (113)
258 cd03022 DsbA_HCCA_Iso DsbA fam 23.5 1.1E+02 0.0024 22.1 3.4 32 4-35 1-36 (192)
259 cd03002 PDI_a_MPD1_like PDI fa 23.0 2.1E+02 0.0046 18.2 5.6 53 4-57 22-79 (109)
260 PF04564 U-box: U-box domain; 22.6 1.9E+02 0.0041 17.5 4.9 25 52-77 15-39 (73)
261 TIGR01130 ER_PDI_fam protein d 22.4 3.8E+02 0.0083 22.5 6.8 73 4-78 22-110 (462)
262 COG2761 FrnE Predicted dithiol 21.9 1.6E+02 0.0036 22.7 3.9 26 4-29 8-37 (225)
263 cd02955 SSP411 TRX domain, SSP 21.5 2.8E+02 0.006 19.0 6.5 61 4-66 19-97 (124)
264 COG2256 MGS1 ATPase related to 21.5 1.5E+02 0.0032 25.3 3.8 33 2-34 49-81 (436)
265 cd02987 Phd_like_Phd Phosducin 21.4 3.3E+02 0.0072 19.8 6.8 64 5-71 88-156 (175)
266 cd03025 DsbA_FrnE_like DsbA fa 20.7 1.6E+02 0.0034 21.4 3.7 31 3-33 2-38 (193)
267 PF05496 RuvB_N: Holliday junc 20.6 2.6E+02 0.0056 21.7 4.7 33 2-34 51-83 (233)
268 TIGR02739 TraF type-F conjugat 20.3 1.6E+02 0.0034 23.3 3.6 33 4-36 154-190 (256)
269 PF09314 DUF1972: Domain of un 20.1 97 0.0021 23.1 2.3 19 60-78 155-173 (185)
270 PF01552 Pico_P2B: Picornaviru 20.0 81 0.0017 20.9 1.7 26 6-31 71-96 (99)
No 1
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-42 Score=258.73 Aligned_cols=213 Identities=46% Similarity=0.757 Sum_probs=190.6
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcCC-CCCC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTWK-GHPI 82 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~~-~~~l 82 (218)
++||++..|||++|++++|.++||+|+.+..++.+++++++..||-+++||+|++||.+|+||..|++||++.++ ++++
T Consensus 10 vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~~i 89 (231)
T KOG0406|consen 10 VKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGPPI 89 (231)
T ss_pred EEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCCCC
Confidence 899999999999999999999999999999999999999999996669999999999999999999999999999 5899
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhc-CCCeecCCCCChhHHHHHHHHH
Q 027827 83 LPENPHERANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELK-NRRFFGGDKIGLVDIVANFIGF 161 (218)
Q Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~-~~~fl~G~~~t~aD~~l~~~l~ 161 (218)
+|.||.++++++.|+++++..+...........+.+..+.+.+++...|..||+.|+ +++|+.|++++++|+++++.+.
T Consensus 90 LP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p~~~ 169 (231)
T KOG0406|consen 90 LPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIAIGPSFE 169 (231)
T ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHhhHH
Confidence 999999999999999999998887777777755433388889999999999999998 7899999999999999997655
Q ss_pred HHHHH-HHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChhhHHHHhhhcccC
Q 027827 162 WLGAI-QEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRDKLISFMRRRYGL 216 (218)
Q Consensus 162 ~~~~~-~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 216 (218)
++... ....+.+.+....+|+|.+|.++|.++++++++++..+.+.+|+++++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~e~~~~~~~~ 225 (231)
T KOG0406|consen 170 RWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVVEFMKKYRQG 225 (231)
T ss_pred HHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHHHHHHHHHHh
Confidence 55433 33333455557899999999999999999999999999999999998865
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=8.7e-41 Score=254.16 Aligned_cols=197 Identities=22% Similarity=0.345 Sum_probs=167.9
Q ss_pred cceEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcCCCCC
Q 027827 2 TEVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTWKGHP 81 (218)
Q Consensus 2 ~~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~~~~~ 81 (218)
++|+||+++.||+|++++++|+++|++|+.+.+++.+++++|+++||. |+||+|+++|.+|+||.+|++||++++|+..
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~-g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~ 87 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPY-QSVPTLVDRELTLYESRIIMEYLDERFPHPP 87 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCC-CCCCEEEECCEEeeCHHHHHHHHHHhCCCCC
Confidence 468999999999999999999999999999999988888999999999 9999999999999999999999999998878
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHH
Q 027827 82 ILPENPHERANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGF 161 (218)
Q Consensus 82 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~ 161 (218)
++|.++.+++++++|+.++.+.+...........++. .+...+.+.+.|+.+|++|++++|++|+++|+||+++++.+.
T Consensus 88 l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~ 166 (211)
T PRK09481 88 LMPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASE-ADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLW 166 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHHHHHH
Confidence 9999999999999999887665544433333332333 566778899999999999998999999999999999999887
Q ss_pred HHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChhh
Q 027827 162 WLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRDK 205 (218)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~ 205 (218)
+.... +.++. ...+|+|++|++++.+||++++++...+.
T Consensus 167 ~~~~~----~~~~~-~~~~p~l~~w~~~~~~rp~~~~~~~~~~~ 205 (211)
T PRK09481 167 RLPVL----GIELS-GPGAKELKGYMTRVFERDSFLASLTEAER 205 (211)
T ss_pred HHHhc----CCCCC-CCCChhHHHHHHHHhccHHHHHHcCHHHH
Confidence 66432 33332 24799999999999999999999886654
No 3
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=8.8e-37 Score=232.77 Aligned_cols=196 Identities=21% Similarity=0.279 Sum_probs=160.1
Q ss_pred cceEEecccCChhHHHHHHHHHHcCCCceeeecCCC---CCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcCC
Q 027827 2 TEVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS---NKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTWK 78 (218)
Q Consensus 2 ~~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~~ 78 (218)
.-|+||+++.||+++|++++|+++||+|+.+.++.. ..+++++.+||+ |+||+|+++|.+|+||.+|++||+++++
T Consensus 1 ~~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~YL~~~~~ 79 (214)
T PLN02473 1 MVVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF-GQVPAIEDGDLKLFESRAIARYYATKYA 79 (214)
T ss_pred CceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC-CCCCeEEECCEEEEehHHHHHHHHHHcC
Confidence 038999999999999999999999999999988875 567889999999 8999999999999999999999999997
Q ss_pred CC--CCCCCCHHHHHHHHHHHHHhhhhhhHHHH-----HhhcC-----cchHHHHHHHHHHHHHHHHHHHHhcCCCeecC
Q 027827 79 GH--PILPENPHERANARFWAQFIDEKCRVALR-----NAYGC-----QEKEREEEATREACELLKTLENELKNRRFFGG 146 (218)
Q Consensus 79 ~~--~l~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G 146 (218)
+. +++|.++.+++++++|+.+..+.+..... ..+.. ......+.....+.+.++.+|++|++++|++|
T Consensus 80 ~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 159 (214)
T PLN02473 80 DQGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGG 159 (214)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccC
Confidence 43 68999999999999999988776644321 12211 11233455678899999999999998899999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCC
Q 027827 147 DKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPP 202 (218)
Q Consensus 147 ~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 202 (218)
+++|+||+++++.+.+....... ..+ .+++|+|.+|++++.+||++++++..
T Consensus 160 d~~t~ADi~~~~~~~~~~~~~~~--~~~--~~~~P~l~~w~~~~~~~p~~~~~~~~ 211 (214)
T PLN02473 160 DEFTLADLTHMPGMRYIMNETSL--SGL--VTSRENLNRWWNEISARPAWKKLMEL 211 (214)
T ss_pred CCCCHHHHHHHHHHHHHHhcccc--HHH--HhcCHHHHHHHHHHhcChhhHHHHHH
Confidence 99999999999988776321111 112 34899999999999999999987654
No 4
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=8.1e-36 Score=227.33 Aligned_cols=193 Identities=19% Similarity=0.213 Sum_probs=157.7
Q ss_pred cceEEeccc--CChhHHHHHHHHHHcCCCceeeecCCCC---CchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhc
Q 027827 2 TEVQLFGLW--GSFFSHRIEIALKLKGVEYEFIEEDLSN---KSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDT 76 (218)
Q Consensus 2 ~~~~L~~~~--~sp~~~~~r~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~ 76 (218)
++|+||+.+ .||+|++++++|+++||+|+.+.+++.. ..++|+++||. |+||+|++||.+|+||.+|++||+++
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~-g~VP~L~~~~~~l~ES~aI~~YL~~~ 82 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT-RRVPTLQHDDFELSESSAIAEYLEER 82 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC-CCCCEEEECCEEEecHHHHHHHHHHH
Confidence 468999976 6999999999999999999999998763 46899999999 89999999999999999999999999
Q ss_pred CCCCC---CCCCCHHHHHHHHHHHHHhhhhhhHHHHH-----hhcC-cchHHHHHHHHHHHHHHHHHHHHhcC-CCeecC
Q 027827 77 WKGHP---ILPENPHERANARFWAQFIDEKCRVALRN-----AYGC-QEKEREEEATREACELLKTLENELKN-RRFFGG 146 (218)
Q Consensus 77 ~~~~~---l~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~-~~fl~G 146 (218)
+++.. ++|.++.+++++++|+.+..+.+.+.... .+.. ......+...+.+.+.|+.+|++|++ +.|++|
T Consensus 83 ~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l~G 162 (214)
T PRK15113 83 FAPPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPGQPNLFG 162 (214)
T ss_pred cCCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCEeeC
Confidence 98665 99999999999999999987665543211 1211 11222455677889999999999975 579999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChhh
Q 027827 147 DKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRDK 205 (218)
Q Consensus 147 ~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~ 205 (218)
+ +|+||+++++.+.++... +.. -.|+|.+|++++.+||+|++++++.+.
T Consensus 163 ~-~TlADi~l~~~l~~~~~~----~~~-----~~p~l~~~~~r~~~rp~~~~~~~~~~~ 211 (214)
T PRK15113 163 E-WCIADTDLALMLNRLVLH----GDE-----VPERLADYATFQWQRASVQRWLALSAK 211 (214)
T ss_pred C-ccHHHHHHHHHHHHHHHc----CCC-----CCHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 6 999999999998776321 211 129999999999999999998876653
No 5
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=4.8e-36 Score=228.82 Aligned_cols=191 Identities=20% Similarity=0.278 Sum_probs=153.5
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCC---CchhhhhhCCCCCcccEEEe-----CC--eEeeecHHHHHH
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSN---KSPLLLQYNSIHKKVPVLVH-----KG--NPIAESRVILEY 72 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~-----~g--~~i~eS~~I~~y 72 (218)
+|+||+.+ +|+|++|+++|+++||+|+.+.+++.. ..++|+++||. |+||+|++ +| .+|+||.+|++|
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~-gkVP~L~~~~~~d~g~~~~L~ES~AI~~Y 78 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPN-NKIPAIVDHSPADGGEPLSLFESGAILLY 78 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcC-CCCCEEEeCCCCCCCCceeEEcHHHHHHH
Confidence 37999876 799999999999999999999998753 36899999999 89999996 45 479999999999
Q ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHh--hcC----cchHHHHHHHHHHHHHHHHHHHHhcCCCeecC
Q 027827 73 IDDTWKGHPILPENPHERANARFWAQFIDEKCRVALRNA--YGC----QEKEREEEATREACELLKTLENELKNRRFFGG 146 (218)
Q Consensus 73 L~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G 146 (218)
|+++++ .+.|.++.+++++++|+.+..+.+.+.+... +.. ..+...+.....+.+.|..+|++|++++|++|
T Consensus 79 L~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 156 (215)
T PRK13972 79 LAEKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGG 156 (215)
T ss_pred HHHhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccCccccC
Confidence 999985 3678889999999999999877766544321 111 11222455667789999999999998899999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChh
Q 027827 147 DKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRD 204 (218)
Q Consensus 147 ~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 204 (218)
+++|+||+++++.+..... . + ++.+.+|+|.+|++++.+||++++++....
T Consensus 157 d~~t~ADi~l~~~~~~~~~---~-~---~~~~~~P~l~~w~~r~~~rp~~~~~~~~~~ 207 (215)
T PRK13972 157 ENYSIADIACWPWVNAWTR---Q-R---IDLAMYPAVKNWHERIRSRPATGQALLKAQ 207 (215)
T ss_pred CCCCHHHHHHHHHHHHHhh---c-C---CcchhCHHHHHHHHHHHhCHHHHHHHHHhc
Confidence 9999999999886643321 1 1 224589999999999999999998766543
No 6
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=1.2e-35 Score=226.75 Aligned_cols=195 Identities=23% Similarity=0.336 Sum_probs=156.9
Q ss_pred CcceEEecccCChhHHHHHHHHHHcCCCceeeecCCC---CCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcC
Q 027827 1 MTEVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS---NKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTW 77 (218)
Q Consensus 1 m~~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~ 77 (218)
|+ +|||+... ++++|++++|+++|++|+.+.++.. +.+++|+++||. |+||+|+++|.+|+||.+|++||++++
T Consensus 1 ~~-~~ly~~~~-~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~ES~aI~~YL~~~~ 77 (215)
T PLN02395 1 MV-LKVYGPAF-ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF-GVVPVIVDGDYKIFESRAIMRYYAEKY 77 (215)
T ss_pred Ce-EEEEcCCc-CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHHHc
Confidence 76 89999765 4699999999999999999999875 457899999999 999999999999999999999999999
Q ss_pred CC--CCCCCCCHHHHHHHHHHHHHhhhhhhHHHHH-----hhc-----CcchHHHHHHHHHHHHHHHHHHHHhcCCCeec
Q 027827 78 KG--HPILPENPHERANARFWAQFIDEKCRVALRN-----AYG-----CQEKEREEEATREACELLKTLENELKNRRFFG 145 (218)
Q Consensus 78 ~~--~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~ 145 (218)
+. ++++|.++.+++++++|+.+....+.+.+.. .+. .......+...+.+.+.++.||++|++++|++
T Consensus 78 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~ 157 (215)
T PLN02395 78 RSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYLA 157 (215)
T ss_pred CCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 74 3589999999999999999877655433222 111 11122245667889999999999999889999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCC
Q 027827 146 GDKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPP 202 (218)
Q Consensus 146 G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 202 (218)
|+++|+||+++++++.+.... ...... ...+|+|.+|++++.++|++++++..
T Consensus 158 G~~~s~ADi~l~~~~~~~~~~--~~~~~~--~~~~p~L~~w~~~~~~rp~~k~~~~~ 210 (215)
T PLN02395 158 GDFVSLADLAHLPFTEYLVGP--IGKAYL--IKDRKHVSAWWDDISSRPAWKEVLAK 210 (215)
T ss_pred CCCcCHHHHHHHHHHHHHhcc--cchhhh--hccCchHHHHHHHHHcChHHHHHHHH
Confidence 999999999999887665311 001112 34789999999999999999998654
No 7
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=6.7e-36 Score=225.80 Aligned_cols=191 Identities=16% Similarity=0.322 Sum_probs=158.6
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCCC----CchhhhhhCCCCCcccEEE-eCCeEeeecHHHHHHHHhcCC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSN----KSPLLLQYNSIHKKVPVLV-HKGNPIAESRVILEYIDDTWK 78 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~----~~~~~~~~~p~~~~vP~l~-~~g~~i~eS~~I~~yL~~~~~ 78 (218)
|+||+...| ++++++++|+++||+|+.+.+++.. .+++|.++||. |+||+|+ +||.+|+||.+|++||+++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~-g~vPvL~~~~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK-GQVPALLLDDGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC-CCCCeEEeCCCcEeecHHHHHHHHHHhCc
Confidence 589998866 7999999999999999999998753 35789999999 8999998 588999999999999999998
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHhhhhhhHHHHHhhcCc-chHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHH
Q 027827 79 GHPIL-PENPHERANARFWAQFIDEKCRVALRNAYGCQ-EKEREEEATREACELLKTLENELKNRRFFGGDKIGLVDIVA 156 (218)
Q Consensus 79 ~~~l~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l 156 (218)
++.++ |.++.+++++++|+.++.+.+.+.+...+... .+.......+.+.+.|+.+|++|++++|++|+++|+||+++
T Consensus 79 ~~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l 158 (201)
T PRK10542 79 DRQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAYL 158 (201)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHHH
Confidence 77765 66788999999999988777666655554432 23324556778999999999999988999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCCh
Q 027827 157 NFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPR 203 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 203 (218)
++++.+.... +.. ...+|+|.+|++++.++|++++++.+.
T Consensus 159 ~~~~~~~~~~----~~~---~~~~p~l~~w~~~~~~~p~~k~~~~~~ 198 (201)
T PRK10542 159 FTVLRWAYAV----KLN---LEGLEHIAAYMQRVAERPAVAAALKAE 198 (201)
T ss_pred HHHHHHhhcc----CCC---cccchHHHHHHHHHHcCHHHHHHHHHc
Confidence 9988776322 221 347999999999999999999987653
No 8
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=5.9e-35 Score=220.82 Aligned_cols=193 Identities=25% Similarity=0.318 Sum_probs=158.1
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEE-eCCeEeeecHHHHHHHHhcCCCCCC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV-HKGNPIAESRVILEYIDDTWKGHPI 82 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~g~~i~eS~~I~~yL~~~~~~~~l 82 (218)
|+||++..||+++++|++|+++||+|+.+.++....++++...||. |+||+|+ ++|.+++||.+|++||++++++..+
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~-g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l 79 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPL-GKVPALVTEEGECWFDSPIIAEYIELLNVAPAM 79 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCc-cCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCC
Confidence 5899999999999999999999999999988877667788889999 8999998 6889999999999999999987779
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHHHhhc----C--cchHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHH
Q 027827 83 LPENPHERANARFWAQFIDEKCRVALRNAYG----C--QEKEREEEATREACELLKTLENELKNRRFFGGDKIGLVDIVA 156 (218)
Q Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l 156 (218)
+|.++.+++++++|..+..+.+......... . ......+...+.+.+.|+.+|++|++++ ++|+++|+||+++
T Consensus 80 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi~l 158 (202)
T PRK10357 80 LPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDTVNLATIAI 158 (202)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCCcCHHHHHH
Confidence 9999999999999988876655443322111 1 1122245667889999999999998878 9999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCC
Q 027827 157 NFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPP 202 (218)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 202 (218)
++.+.++.... .+..+ ..++|+|.+|++++.+||+|+++.+.
T Consensus 159 ~~~l~~~~~~~--~~~~~--~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 159 ACAVGYLNFRR--VAPGW--CVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred HHHHHHHHhcc--cCcch--hhcChHHHHHHHHHhcChhhhhcCCC
Confidence 99988764310 01111 24799999999999999999998765
No 9
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=4.3e-35 Score=222.81 Aligned_cols=191 Identities=26% Similarity=0.401 Sum_probs=156.5
Q ss_pred EEecccCChhHHHHHHHHHHcCCCceeeecCCC----CCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcCCCC
Q 027827 5 QLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS----NKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTWKGH 80 (218)
Q Consensus 5 ~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~~~~ 80 (218)
+||++..||+++++|++|.++||+|+.+.++.. ..++++.++||. |+||+|+++|.+|+||.+|++||++++++.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~ 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-GLVPTLDIDGEVLTQSLAIIEYLEETYPDP 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-CcCCEEEECCEEeecHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999862 346789999999 899999999999999999999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhhHH----HHHhhc----CcchHHHHHHHHHHHHHHHHHHHHhcC--CCeecCCCCC
Q 027827 81 PILPENPHERANARFWAQFIDEKCRVA----LRNAYG----CQEKEREEEATREACELLKTLENELKN--RRFFGGDKIG 150 (218)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~l~~le~~L~~--~~fl~G~~~t 150 (218)
.++|.++.+++++++|+.+....+.+. +...+. .......+...+.+.+.|+.||++|++ ++|++|+++|
T Consensus 80 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T 159 (210)
T TIGR01262 80 PLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPT 159 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCC
Confidence 799999999999999998876544322 111221 122222333556799999999999975 5699999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCCh
Q 027827 151 LVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPR 203 (218)
Q Consensus 151 ~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 203 (218)
+||+++++++.+.... + +....||+|++|+++|.+||+++++....
T Consensus 160 ~ADi~~~~~l~~~~~~----~---~~~~~~p~l~~~~~~~~~rp~~~~~~~~~ 205 (210)
T TIGR01262 160 LADLCLVPQVYNAERF----G---VDLTPYPTLRRIAAALAALPAFQRAHPEN 205 (210)
T ss_pred HHHHHHHHHHHHHHHc----C---CCcccchHHHHHHHHHhcCHHHHHhCccc
Confidence 9999999998776321 2 12358999999999999999999988754
No 10
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-35 Score=222.35 Aligned_cols=186 Identities=28% Similarity=0.482 Sum_probs=160.1
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCC--CCchhhhhhCCCCCcccEEEeCCe-EeeecHHHHHHHHhcCCCC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS--NKSPLLLQYNSIHKKVPVLVHKGN-PIAESRVILEYIDDTWKGH 80 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~vP~l~~~g~-~i~eS~~I~~yL~~~~~~~ 80 (218)
|+||+++.||+|+|++++|.++|++|+.+.|+.. ..+++|+.+||. |+||+|++++. +|+||.+|++||+++||++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~-gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPL-GKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCC-CCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 6899999999999999999999999999999998 478999999999 89999997654 8999999999999999877
Q ss_pred CCCCCCHH---HHHHHHHHHHHhhhhhhHHHHHhhcCc-------chHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCC
Q 027827 81 PILPENPH---ERANARFWAQFIDEKCRVALRNAYGCQ-------EKEREEEATREACELLKTLENELKNRRFFGGDKIG 150 (218)
Q Consensus 81 ~l~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t 150 (218)
.++|.++. +++.+..|..+..+.+.+.+....... .++..+...+.+...+..+|+.|++++|++|+++|
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 159 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADGPYLAGDRFT 159 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCC
Confidence 69998774 788888999998887777766644332 23447778899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhh
Q 027827 151 LVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIK 197 (218)
Q Consensus 151 ~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 197 (218)
+||+++++.+.++... +.. ...+|++.+|++|+.++|+++
T Consensus 160 iAD~~~~~~~~~~~~~----~~~---~~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 160 IADIALAPLLWRLALL----GEE---LADYPALKAWYERVLARPAFR 199 (211)
T ss_pred HHHHHHHHHHHHhhhc----Ccc---cccChHHHHHHHHHHcCCchh
Confidence 9999999988886332 211 147999999999999999976
No 11
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-35 Score=205.55 Aligned_cols=193 Identities=26% Similarity=0.424 Sum_probs=165.8
Q ss_pred cceEEecccCChhHHHHHHHHHHcCCCceeeecCCC----CCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcC
Q 027827 2 TEVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS----NKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTW 77 (218)
Q Consensus 2 ~~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~ 77 (218)
.+.+||+|+.|..++|||++|+.+||+|+.+.|++- ..+.+|.++||+ ++||+|++||.+|+||.||++||++.+
T Consensus 4 ~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm-~kVP~L~i~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM-EKVPTLVIDGLTLTESLAIIEYLEETY 82 (217)
T ss_pred ccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch-hhCCeEEECCEEeehHHHHHHHHHhcC
Confidence 468999999999999999999999999999999886 335689999999 899999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHH----hhcC--cchHHHHHHHHHHHHHHHHHHHHhc--CCCeecCCCC
Q 027827 78 KGHPILPENPHERANARFWAQFIDEKCRVALRN----AYGC--QEKEREEEATREACELLKTLENELK--NRRFFGGDKI 149 (218)
Q Consensus 78 ~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~l~~le~~L~--~~~fl~G~~~ 149 (218)
|+++|+|.++..++.++++...+.+.+.+.... ..+. .+.. ..-+...+.+.+..||..|. .++|-+||+.
T Consensus 83 P~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~-~~W~q~~ItkGF~ALEklL~~~aGkycvGDev 161 (217)
T KOG0868|consen 83 PDPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYG-DQWAQHFITKGFTALEKLLKSHAGKYCVGDEV 161 (217)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchh-hHHHHHHHHHhHHHHHHHHHHccCCcccCcee
Confidence 999999999999999999999998887765433 2221 1112 44566778999999999996 4799999999
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCCh
Q 027827 150 GLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPR 203 (218)
Q Consensus 150 t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 203 (218)
|+||+++.+.+.....+ . ++...||.+.+..+.+.+.|.|+.+.++.
T Consensus 162 tiADl~L~pqv~nA~rf----~---vdl~PYPti~ri~e~l~elpaFq~ahP~n 208 (217)
T KOG0868|consen 162 TIADLCLPPQVYNANRF----H---VDLTPYPTITRINEELAELPAFQAAHPDN 208 (217)
T ss_pred ehhhhccchhhhhhhhc----c---ccCCcCchHHHHHHHHHhCHHHHhcCCCC
Confidence 99999999988877443 2 33568999999999999999999988764
No 12
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=6.6e-34 Score=217.17 Aligned_cols=196 Identities=17% Similarity=0.216 Sum_probs=154.8
Q ss_pred ccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcCCC---CCCCCC
Q 027827 9 LWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTWKG---HPILPE 85 (218)
Q Consensus 9 ~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~~~---~~l~p~ 85 (218)
...||+|++++++|.++||+|+.+.+++..++++|+++||. |+||+|+++|.+|+||.+|++||+++++. +.+.|.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~-g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~ 94 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPG-THPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPK 94 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcC-CCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCC
Confidence 45799999999999999999999999999888999999999 89999999999999999999999999964 345566
Q ss_pred CHHHHHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhc------------------CCCeecCC
Q 027827 86 NPHERANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELK------------------NRRFFGGD 147 (218)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~------------------~~~fl~G~ 147 (218)
++..++... .+...+..++....+...+...+++.+.|+.||+.|. +++|+.|+
T Consensus 95 ~~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd 166 (236)
T TIGR00862 95 HPESNTAGL--------DIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGD 166 (236)
T ss_pred CHHHHHHHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCC
Confidence 654443221 1122222222222222244556679999999999996 57999999
Q ss_pred CCChhHHHHHHHHHHHHHHH-HhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChhhHHHHhhhccc
Q 027827 148 KIGLVDIVANFIGFWLGAIQ-EALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRDKLISFMRRRYG 215 (218)
Q Consensus 148 ~~t~aD~~l~~~l~~~~~~~-~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 215 (218)
++|+|||++++.+.++.... ...+.++ .+++|+|.+|++++.++++|+++++..+.+.+...++.+
T Consensus 167 ~~tlaD~~l~p~l~~l~~~~~~~~~~~i--~~~~p~l~~w~~~~~~~~sf~~t~p~~~~i~~~~~~~~~ 233 (236)
T TIGR00862 167 ELTLADCNLLPKLHIVKVVAKKYRNFDI--PAEFTGVWRYLSNAYAREEFTNTCPDDKEIELAYADVAK 233 (236)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhCcCc--cccCchHHHHHHHHhccchHHhhCCChHHHHHHHHHHhh
Confidence 99999999999998887542 2324333 469999999999999999999999999987777776643
No 13
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=3.2e-34 Score=224.49 Aligned_cols=197 Identities=19% Similarity=0.261 Sum_probs=154.1
Q ss_pred ceEEecccCChhHHHHHHHHHHc------CCCceeeecCCC---CCchhhhhhCCCCCcccEEEeC----CeEeeecHHH
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLK------GVEYEFIEEDLS---NKSPLLLQYNSIHKKVPVLVHK----GNPIAESRVI 69 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~------gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~----g~~i~eS~~I 69 (218)
+|+||+.+ ||+|+||+++|+++ |++|+.+.+++. +..++|+++||. |+||+|+++ |.+|+||.+|
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~-GkVP~Lv~~dg~~~~~L~ES~AI 121 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN-SKIPALLDRSGNPPIRVFESGAI 121 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-CCCCEEEeCCCCCCeEEEcHHHH
Confidence 58999975 99999999999997 999999998875 347899999999 899999974 3689999999
Q ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhhhhhH---HHHHhhc--Cc-chHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 027827 70 LEYIDDTWKGHPILPENPHERANARFWAQFIDEKCRV---ALRNAYG--CQ-EKEREEEATREACELLKTLENELKNRRF 143 (218)
Q Consensus 70 ~~yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~-~~~~~~~~~~~~~~~l~~le~~L~~~~f 143 (218)
++||+++++ +|+|.++.+++++++|+.+..+.+.. .+...+. .. .+...+....++.+.|+.+|++|++++|
T Consensus 122 l~YL~~~~~--~L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~~f 199 (264)
T PRK11752 122 LLYLAEKFG--AFLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEHEY 199 (264)
T ss_pred HHHHHHhcC--CcCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999987 48999999999999999987654311 1111221 11 1222455567789999999999998899
Q ss_pred ecCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCCh
Q 027827 144 FGGDKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPR 203 (218)
Q Consensus 144 l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 203 (218)
++|+++|+|||++++.+.++............+...+|+|.+|++++.+||+++++...+
T Consensus 200 l~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~ 259 (264)
T PRK11752 200 IAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVN 259 (264)
T ss_pred CCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhcc
Confidence 999999999999999877663210000111222458999999999999999999987654
No 14
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=1.4e-32 Score=209.15 Aligned_cols=186 Identities=20% Similarity=0.289 Sum_probs=144.3
Q ss_pred cccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcCCCCCCCCCCH
Q 027827 8 GLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTWKGHPILPENP 87 (218)
Q Consensus 8 ~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~~~~~l~p~~~ 87 (218)
.+..||||+|++++|+++|++|+.+.+++..++++|+++||. |+||+|+++|.+|+||.+|++||++++++..+ .++
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~-G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l--~~~ 92 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQ-GKVPVLKIDDKWVTDSDVIVGILEEKYPDPPL--KTP 92 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHhCCCCCC--CCH
Confidence 345699999999999999999999999998888999999999 89999999999999999999999999986555 345
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhc--CCCeecCCCCChhHHHHHHHHHHHHH
Q 027827 88 HERANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELK--NRRFFGGDKIGLVDIVANFIGFWLGA 165 (218)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--~~~fl~G~~~t~aD~~l~~~l~~~~~ 165 (218)
.+++.+...+ ...+..++.... . .+...+.+.+.|+.+|++|+ +++|++|+++|+||+++++.+.++..
T Consensus 93 ~~~a~i~~~~-------~~~~~~~~~~~~-~-~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~ 163 (213)
T PLN02378 93 AEFASVGSNI-------FGTFGTFLKSKD-S-NDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQV 163 (213)
T ss_pred HHHHHHHHHH-------HHHHHHHHhcCC-h-hhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHH
Confidence 5666554422 112222222211 1 23344677889999999997 47899999999999999999877643
Q ss_pred HHH-hhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChhhHH
Q 027827 166 IQE-ALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRDKLI 207 (218)
Q Consensus 166 ~~~-~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~ 207 (218)
... ..+.+. .+.+|+|.+|++++.+||++++++.......
T Consensus 164 ~~~~~~~~~~--~~~~p~l~~w~~~~~~rpa~~~~~~~~~~~~ 204 (213)
T PLN02378 164 ALGHFKSWSV--PESFPHVHNYMKTLFSLDSFEKTKTEEKYVI 204 (213)
T ss_pred HHHHhcCCCc--hhHhHHHHHHHHHHhcCCCeecccCChHHHH
Confidence 211 111111 3589999999999999999999988876643
No 15
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=100.00 E-value=1.1e-31 Score=209.16 Aligned_cols=187 Identities=18% Similarity=0.272 Sum_probs=145.9
Q ss_pred cccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcCCCCCCCCCCH
Q 027827 8 GLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTWKGHPILPENP 87 (218)
Q Consensus 8 ~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~~~~~l~p~~~ 87 (218)
....||||+|++++|+++||+|+.+.+++..++++|+++||. |+||+|+++|..|+||.+|++||++++++..+. ++
T Consensus 69 ~~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~-GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~~ 145 (265)
T PLN02817 69 KLGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPE-GKVPVVKLDEKWVADSDVITQALEEKYPDPPLA--TP 145 (265)
T ss_pred cCCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCC-CCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--CH
Confidence 344599999999999999999999999998889999999999 899999998899999999999999999876663 56
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhcC-CCeecCCCCChhHHHHHHHHHHHHHH
Q 027827 88 HERANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELKN-RRFFGGDKIGLVDIVANFIGFWLGAI 166 (218)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~fl~G~~~t~aD~~l~~~l~~~~~~ 166 (218)
.+++.++.++. ..+...+.... . .....+.+.+.|..||++|++ ++|++|+++|+||+++++.+.++...
T Consensus 146 ~era~i~~~l~-------~~~~~~~~~~~-~-~~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~ 216 (265)
T PLN02817 146 PEKASVGSKIF-------STFIGFLKSKD-P-GDGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEIA 216 (265)
T ss_pred HHHHHHHHHHH-------HHHHHHhccCC-c-chHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHH
Confidence 67777665432 11112222211 1 122345678889999999974 79999999999999999998877532
Q ss_pred HH-hhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChhhHHH
Q 027827 167 QE-ALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRDKLIS 208 (218)
Q Consensus 167 ~~-~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~ 208 (218)
.. ..+.+. .+.+|+|.+|++++.++|+|+++.+..+...+
T Consensus 217 ~~~~~~~~i--~~~~P~L~~w~~ri~~rps~~~~~~~~~~~~~ 257 (265)
T PLN02817 217 LGHYKNWSV--PDSLPFVKSYMKNIFSMESFVKTRALPEDVIA 257 (265)
T ss_pred HHHhcCCCc--cccCHHHHHHHHHHhcchhHhhcCCCHHHHHH
Confidence 11 111112 35899999999999999999999998776544
No 16
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-31 Score=204.41 Aligned_cols=199 Identities=26% Similarity=0.354 Sum_probs=168.0
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCC---CCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcCC-
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS---NKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTWK- 78 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~~- 78 (218)
.|+||++..||.|+++.+++.++|++|+.+.+++. +.+++|+++||. |+||+|+|+|..++||.||+.||.++|.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~-~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPL-GKVPALEDGGLTLWESHAILRYLAEKYGP 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcC-CCCCeEecCCeEEeeHHHHHHHHHHHcCC
Confidence 48999999999999999999999999999987775 779999999999 8999999999999999999999999996
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHhhhhhhHHH--HH-----hhcCc-chHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCC
Q 027827 79 GHP-ILPENPHERANARFWAQFIDEKCRVAL--RN-----AYGCQ-EKEREEEATREACELLKTLENELKNRRFFGGDKI 149 (218)
Q Consensus 79 ~~~-l~p~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~ 149 (218)
... ++|.+..+++.+++|+.+..+.+.+.. .. .++.. .....+.....+...++.+|+.|.++.|+.|+++
T Consensus 81 ~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~~~ 160 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAGDQL 160 (226)
T ss_pred CCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccCCcc
Confidence 334 899999999999999999888887763 22 22221 3333788899999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChhhH
Q 027827 150 GLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRDKL 206 (218)
Q Consensus 150 t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~ 206 (218)
|+||+.+.+.+..+.. ..... ....++|++.+|++++.++|++++........
T Consensus 161 tlADl~~~~~~~~~~~--~~~~~--~~~~~~p~v~~W~~~~~~~P~~~e~~~~~~~~ 213 (226)
T KOG0867|consen 161 TLADLSLASTLSQFQG--KFATE--KDFEKYPKVARWYERIQKRPAYEEANEKGAAP 213 (226)
T ss_pred cHHHHHHhhHHHHHhH--hhhhh--hhhhhChHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 9999999998877632 11112 22569999999999999999988877655543
No 17
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=2.9e-31 Score=200.89 Aligned_cols=189 Identities=18% Similarity=0.167 Sum_probs=139.0
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhh--------hhCCCCCcccEEEeCCeEeeecHHHHHHHH
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLL--------QYNSIHKKVPVLVHKGNPIAESRVILEYID 74 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~--------~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~ 74 (218)
+++||+++.++.++++|++|+++||+|+.+.++.. . +++. +.||+ |+||+|++||.+|+||.+|++||+
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~-~-~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~eS~AI~~YLa 80 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGEN-G-DAFIEFKNFKKEKDTPF-EQVPILEMDNIIFAQSQAIVRYLS 80 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEecccc-c-hHHHHHHhccccCCCCC-CCCCEEEECCEEEecHHHHHHHHH
Confidence 38999999999999999999999999999977532 2 2332 48999 899999999999999999999999
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhcC--CCeecCCCCChh
Q 027827 75 DTWKGHPILPENPHERANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELKN--RRFFGGDKIGLV 152 (218)
Q Consensus 75 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~fl~G~~~t~a 152 (218)
++++ +.+.+..++..++.+.....+.........+ ..+...+...+.+.+.++.||++|++ ++|++|+++|+|
T Consensus 81 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T~A 155 (205)
T PTZ00057 81 KKYK---ICGESELNEFYADMIFCGVQDIHYKFNNTNL--FKQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLTYA 155 (205)
T ss_pred HHcC---CCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcccHH
Confidence 9997 4455544444444333322222111111000 01121334567889999999999974 389999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChhh
Q 027827 153 DIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRDK 205 (218)
Q Consensus 153 D~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~ 205 (218)
|+++++++.++... .+ .. .+.||+|.+|+++++++|++++++.++.+
T Consensus 156 D~~l~~~~~~~~~~---~~-~~--l~~~P~l~~~~~r~~~~P~~k~y~~~~~~ 202 (205)
T PTZ00057 156 DLAVFNLYDDIETK---YP-NS--LKNFPLLKAHNEFISNLPNIKNYISNRKE 202 (205)
T ss_pred HHHHHHHHHHHHHh---Ch-hh--hccChhHHHHHHHHHhChHHHHHHHhCCC
Confidence 99999988776421 12 11 35899999999999999999999877654
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.98 E-value=2.2e-31 Score=202.44 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=137.9
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEE-eCCeEeeecHHHHHHHHhcCCCCCC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV-HKGNPIAESRVILEYIDDTWKGHPI 82 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~g~~i~eS~~I~~yL~~~~~~~~l 82 (218)
|+||++..||+|+|+|++|+++||+|+.+.++...... -.+.||. |+||+|+ ++|.+|+||.+|++||+++|+++.+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~-~~~~~p~-~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l 78 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT-PIRMIGQ-KQVPILQKDDGSYMPESLDIVHYIDELDGKPLL 78 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh-HHHhcCC-cccceEEecCCeEecCHHHHHHHHHHhCCCccC
Confidence 68999999999999999999999999999886553222 2578998 8999995 8899999999999999999986544
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHHHhhcCc------chH---------------------HHHHHHHHHHHHHHHHH
Q 027827 83 LPENPHERANARFWAQFIDEKCRVALRNAYGCQ------EKE---------------------REEEATREACELLKTLE 135 (218)
Q Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---------------------~~~~~~~~~~~~l~~le 135 (218)
.+ .+++.+++|+.+....+...+...+... ... ..+...+.+.+.|+.+|
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le 155 (210)
T PRK10387 79 TG---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALD 155 (210)
T ss_pred CC---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHH
Confidence 32 2567788888877655443332211100 000 01345678899999999
Q ss_pred HHhcCCCeecCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchh
Q 027827 136 NELKNRRFFGGDKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSII 196 (218)
Q Consensus 136 ~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (218)
++|++ +|++|+++|+||+++++.+.++... + .++ .+|+|.+|++||.+||++
T Consensus 156 ~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~----~--~~~--~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 156 PLIVK-PNAVNGELSTDDIHLFPILRNLTLV----K--GIE--WPPRVADYRDNMSKKTQV 207 (210)
T ss_pred HHhcC-ccccCCCCCHHHHHHHHHHhcceee----c--CCC--CCHHHHHHHHHHHHHhCC
Confidence 99987 9999999999999999999887432 1 122 469999999999999986
No 19
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.97 E-value=2e-29 Score=191.23 Aligned_cols=177 Identities=15% Similarity=0.162 Sum_probs=133.8
Q ss_pred EEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEE-eCCeEeeecHHHHHHHHhcCCCCCCC
Q 027827 5 QLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV-HKGNPIAESRVILEYIDDTWKGHPIL 83 (218)
Q Consensus 5 ~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~g~~i~eS~~I~~yL~~~~~~~~l~ 83 (218)
+||++..||+|+|||++|.++|++|+.+.++.... ....+.||. |+||+|+ +||..++||.+|++||+++|+.+.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~~~~np~-g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~ 78 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETPIRMIGA-KQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLT 78 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcc-hhHHHhcCC-CCcceEEeeCCeEeccHHHHHHHHHHhCCCccCC
Confidence 68999999999999999999999999987765432 234789999 8999998 89999999999999999999764333
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhHHHHHhhcC-----------------cchHH----------HHHHHHHHHHHHHHHHH
Q 027827 84 PENPHERANARFWAQFIDEKCRVALRNAYGC-----------------QEKER----------EEEATREACELLKTLEN 136 (218)
Q Consensus 84 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~----------~~~~~~~~~~~l~~le~ 136 (218)
+. .++.+++|+.++...+...+...+.. ..+.. .++..+.+.+.|+.+|+
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~ 155 (209)
T TIGR02182 79 GK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDK 155 (209)
T ss_pred CC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHH
Confidence 32 35667777776655543333221110 00000 13556788999999999
Q ss_pred HhcCCCeecCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCc-HHHHHHHHHhhcchh
Q 027827 137 ELKNRRFFGGDKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFP-KLYRWSEEFVNCSII 196 (218)
Q Consensus 137 ~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p-~l~~w~~~~~~~p~~ 196 (218)
+|++++|+.| ++|+||+++++.+.++... + ...+| +|.+|++||++|+++
T Consensus 156 ~L~~~~~l~g-~~TiADi~l~~~l~~~~~~----~-----~~~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 156 LIDGPNAVNG-ELSEDDILVFPLLRNLTLV----A-----GINWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHhCccccCC-CCCHHHHHHHHHhcCeeee----c-----CCCCChHHHHHHHHHHHHhCC
Confidence 9999999965 6999999999998876321 1 11356 999999999999875
No 20
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.3e-29 Score=184.75 Aligned_cols=196 Identities=23% Similarity=0.257 Sum_probs=163.6
Q ss_pred CcceEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcCCCC
Q 027827 1 MTEVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTWKGH 80 (218)
Q Consensus 1 m~~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~~~~ 80 (218)
|+.++|++++..+++..+|+++++.|++|+.+.++..+..+..+...|+ |++|+|..||..|.+|.||++||+++|+
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pf-gqlP~l~vDg~~i~QS~AI~RyLArk~g-- 77 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPF-GQLPVLEVDGKKLVQSRAILRYLARKFG-- 77 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCC-CCCCEEeECCEeeccHHHHHHHHHHHhC--
Confidence 8889999999999999999999999999999999888655556667899 8999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhhHHHHHhhcCcc----hHHHH-HHHHHHHHHHHHHHHHhc--CCCeecCCCCChhH
Q 027827 81 PILPENPHERANARFWAQFIDEKCRVALRNAYGCQE----KEREE-EATREACELLKTLENELK--NRRFFGGDKIGLVD 153 (218)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~l~~le~~L~--~~~fl~G~~~t~aD 153 (218)
+.+.++.+.+.++.+++-..+.....+...+.... +...+ .......+.++.+++.|. ++.|++|+++|+||
T Consensus 78 -l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~aD 156 (206)
T KOG1695|consen 78 -LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWAD 156 (206)
T ss_pred -cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHHH
Confidence 99999999999999999888877765555444211 11011 455677889999999997 46799999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChhh
Q 027827 154 IVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRDK 205 (218)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~ 205 (218)
+.++..+..+... ...+. ...+|+|+++.+++.++|.+++.+.++..
T Consensus 157 l~i~e~l~~l~~~---~~~~~--~~~~P~L~a~~~kv~~~p~ik~~i~~r~~ 203 (206)
T KOG1695|consen 157 LVIAEHLDTLEEL---LDPSA--LDHFPKLKAFKERVSSIPNIKKYLESRPV 203 (206)
T ss_pred HHHHHHHHHHHHh---cCchh--hccChHHHHHHHHHhcCchHHHHHhcCCC
Confidence 9999988777432 23444 34789999999999999999998877653
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.96 E-value=2.4e-28 Score=181.58 Aligned_cols=209 Identities=19% Similarity=0.273 Sum_probs=156.8
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCC---CCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcC-CC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS---NKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTW-KG 79 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~-~~ 79 (218)
++||.++.|--+||||+.++++||+|+...|++. +.++||.++||. |.||||+++..+|.|+..|++|++++| ++
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~-gevPVl~~g~~II~d~tqIIdYvErtf~ge 105 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPG-GEVPVLIHGDNIISDYTQIIDYVERTFTGE 105 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCC-CCCceEecCCeecccHHHHHHHHHHhhccc
Confidence 7999999999999999999999999999999987 678999999998 999999999999999999999999999 45
Q ss_pred CCCCCC-CHHHHHHHHHHHHHhhhhhh-------------------HHHH---H--------------------------
Q 027827 80 HPILPE-NPHERANARFWAQFIDEKCR-------------------VALR---N-------------------------- 110 (218)
Q Consensus 80 ~~l~p~-~~~~~~~~~~~~~~~~~~~~-------------------~~~~---~-------------------------- 110 (218)
..|.|. ++.+..++.+.....+..=. |... .
T Consensus 106 r~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~a 185 (325)
T KOG4420|consen 106 RVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYLA 185 (325)
T ss_pred ccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHHH
Confidence 567775 33344444433332221000 0000 0
Q ss_pred --------hhcCcchHHHHHHHHHHHHHHHHHHHHhcC----CCeecCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 027827 111 --------AYGCQEKEREEEATREACELLKTLENELKN----RRFFGGDKIGLVDIVANFIGFWLGAIQEALEVKLFTED 178 (218)
Q Consensus 111 --------~~~~~~~~~~~~~~~~~~~~l~~le~~L~~----~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~ 178 (218)
....+.....++....+...|+.+|+.|.+ ..||+|+.+|+||+.+.++|+++..++.. ......+
T Consensus 186 kqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e--~~yw~~g 263 (325)
T KOG4420|consen 186 KQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLE--KKYWEDG 263 (325)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccH--HHhcccC
Confidence 000111112455567778888899999976 67999999999999999999999776332 2233356
Q ss_pred CCcHHHHHHHHHhhcchhhccCCChhhHH-HHhhhccc
Q 027827 179 RFPKLYRWSEEFVNCSIIKESLPPRDKLI-SFMRRRYG 215 (218)
Q Consensus 179 ~~p~l~~w~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~ 215 (218)
..|||..|+.|+..|++|+++++....+. .+....++
T Consensus 264 srpnle~Yf~rvrrR~sf~kvlg~~fnilr~~~~~~kt 301 (325)
T KOG4420|consen 264 SRPNLESYFERVRRRFSFRKVLGDIFNILRFRLVKRKT 301 (325)
T ss_pred CCccHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHhcC
Confidence 88999999999999999999999887643 33444443
No 22
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.5e-23 Score=151.88 Aligned_cols=194 Identities=19% Similarity=0.233 Sum_probs=152.0
Q ss_pred cCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcCCCCCCCCCCHHH
Q 027827 10 WGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTWKGHPILPENPHE 89 (218)
Q Consensus 10 ~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~~~~~l~p~~~~~ 89 (218)
..|||||++.+.|.++|++|.++.||+..+++||++++|. |++|+|..|+..++||..|.++|++.++.+++--.++.+
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~-~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~E 97 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPG-GKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPPE 97 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCC-CCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCHH
Confidence 3599999999999999999999999999999999999998 899999999999999999999999999876542211222
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhcC---CCeecCCCCChhHHHHHHHHHHHHHH
Q 027827 90 RANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELKN---RRFFGGDKIGLVDIVANFIGFWLGAI 166 (218)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~---~~fl~G~~~t~aD~~l~~~l~~~~~~ 166 (218)
.+ -+...++..+..+.-...++..+.....+.+.|..|+++|.. ++|+.||++|.||+.+++-|+.++..
T Consensus 98 ~a-------sag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va 170 (221)
T KOG1422|consen 98 SA-------SAGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVA 170 (221)
T ss_pred HH-------hhHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHH
Confidence 21 122333333333332333332455667889999999999974 79999999999999999999988766
Q ss_pred HHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChhhHHHHhhh
Q 027827 167 QEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRDKLISFMRR 212 (218)
Q Consensus 167 ~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~ 212 (218)
..++..--+ .+.++.+.+|++.+.++.+|..+.+..+++......
T Consensus 171 ~k~yk~~~I-P~~lt~V~rYl~~~ya~d~F~~tcp~d~ei~~~y~~ 215 (221)
T KOG1422|consen 171 AKHYKNFEI-PASLTGVWRYLKNAYARDEFTNTCPADQEIILAYAP 215 (221)
T ss_pred HHHhcCCCC-chhhhHHHHHHHHHHhHHHhhcCCchHHHHHHhhhh
Confidence 554332223 478999999999999999999999998886544433
No 23
>PLN02907 glutamate-tRNA ligase
Probab=99.92 E-value=7.6e-24 Score=183.81 Aligned_cols=158 Identities=17% Similarity=0.171 Sum_probs=130.5
Q ss_pred CcceEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEE-eCCeEeeecHHHHHHHHhcCCC
Q 027827 1 MTEVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV-HKGNPIAESRVILEYIDDTWKG 79 (218)
Q Consensus 1 m~~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~g~~i~eS~~I~~yL~~~~~~ 79 (218)
|+ ++||+.+.|+ +.++.++|++.|++|+.+. .+|. |+||+|+ ++|.+|+||.+|++||++.+++
T Consensus 1 ~~-~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~------------~~p~-GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~ 65 (722)
T PLN02907 1 ME-AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP------------SLKS-GSAPTLLFSSGEKLTGTNVLLRYIARSASL 65 (722)
T ss_pred Ce-EEEEECCCCC-hHHHHHHHHHcCCCcEEee------------cCCC-CCCcEEEECCCCEEECHHHHHHHHHHhCCC
Confidence 77 8999998875 6679999999999999974 2577 8999999 5889999999999999999988
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHH
Q 027827 80 HPILPENPHERANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFI 159 (218)
Q Consensus 80 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~ 159 (218)
..|+|.++.+++++++|+.+...... ...+...|+.||.+|++++||+|+++|+||+++++.
T Consensus 66 ~~L~p~d~~erAqV~qWL~~~~~~~~------------------~~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~~ 127 (722)
T PLN02907 66 PGFYGQDAFESSQVDEWLDYAPTFSS------------------GSEFENACEYVDGYLASRTFLVGYSLTIADIAIWSG 127 (722)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhhccc------------------HHHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHHH
Confidence 78999999999999999998754210 013567899999999999999999999999999998
Q ss_pred HHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcch
Q 027827 160 GFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSI 195 (218)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~ 195 (218)
+..... .+..... ...+|+|.+|++++.++|+
T Consensus 128 L~~~~~--~~~~~~~--~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 128 LAGSGQ--RWESLRK--SKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred HHhhhh--hhhcccc--cccCHHHHHHHHHHHhCCC
Confidence 765411 1111112 3589999999999999999
No 24
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.86 E-value=1.1e-21 Score=124.75 Aligned_cols=74 Identities=38% Similarity=0.725 Sum_probs=70.9
Q ss_pred EecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcCCCC
Q 027827 6 LFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTWKGH 80 (218)
Q Consensus 6 L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~~~~ 80 (218)
||++..||||+|+|++|+++||+|+.+.++...+.+++...||. |+||+|++||.+++||.+|++||+++|+++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~-~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPK-GKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTT-SBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhccc-ccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999988888999999999 899999999999999999999999999864
No 25
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.83 E-value=1.9e-20 Score=118.39 Aligned_cols=73 Identities=36% Similarity=0.559 Sum_probs=69.3
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTW 77 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~ 77 (218)
|+||+.+.||+|++++++|+++|++|+.+.++..+..+++++.||. |++|+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPY-GTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999999988878999999999 899999999999999999999999864
No 26
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.83 E-value=2.4e-20 Score=117.64 Aligned_cols=70 Identities=27% Similarity=0.539 Sum_probs=65.2
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCC---CCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHH
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS---NKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYID 74 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~ 74 (218)
++||+++.||+|+|+|++|+++|++|+.+.++.. ...++|.++||. |+||+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~-g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPT-GEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999998874 457889999999 899999999999999999999985
No 27
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.82 E-value=3.1e-20 Score=120.52 Aligned_cols=70 Identities=23% Similarity=0.309 Sum_probs=66.1
Q ss_pred cCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcCCCC
Q 027827 10 WGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTWKGH 80 (218)
Q Consensus 10 ~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~~~~ 80 (218)
..||||+|+|++|+++||+|+.+.+++.+++++|+++||. |+||+|+++|.+|+||.+|++||+++++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~-g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPG-TQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 4689999999999999999999999999999999999999 899999999999999999999999998643
No 28
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.82 E-value=5.5e-20 Score=116.60 Aligned_cols=74 Identities=61% Similarity=1.075 Sum_probs=68.3
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTW 77 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~ 77 (218)
|+||+++.||+|+|+|++|+++|++|+.+.++...+.+++.+.||.+|++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 68999999999999999999999999999998877788999999932799999999999999999999999764
No 29
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.82 E-value=1.6e-19 Score=135.45 Aligned_cols=171 Identities=20% Similarity=0.215 Sum_probs=128.7
Q ss_pred CChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcCCCCCCCCCCHHHH
Q 027827 11 GSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTWKGHPILPENPHER 90 (218)
Q Consensus 11 ~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~~~~~l~p~~~~~~ 90 (218)
.||||.|+..+|...+||||.+...+. ..+.. |++|.++-||+.|.||..|..+|.+.+.-+.. .+++++
T Consensus 60 LSPfClKvEt~lR~~~IpYE~~~~~~~-------~rSr~-G~lPFIELNGe~iaDS~~I~~~L~~hf~~~~~--L~~e~~ 129 (281)
T KOG4244|consen 60 LSPFCLKVETFLRAYDIPYEIVDCSLK-------RRSRN-GTLPFIELNGEHIADSDLIEDRLRKHFKIPDD--LSAEQR 129 (281)
T ss_pred CChHHHHHHHHHHHhCCCceeccccce-------eeccC-CCcceEEeCCeeccccHHHHHHHHHHcCCCCC--CCHHHH
Confidence 589999999999999999999866542 35566 89999999999999999999999998864332 356678
Q ss_pred HHHHHHHHHhhhhhhHHHHH---------------------------------hhcC---------cchHHHHHHHHHHH
Q 027827 91 ANARFWAQFIDEKCRVALRN---------------------------------AYGC---------QEKEREEEATREAC 128 (218)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~---------~~~~~~~~~~~~~~ 128 (218)
++.+.+..+++..+...+.. .|.. -+.-..++..+.+.
T Consensus 130 a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~IG~f~~~Ei~ell~ 209 (281)
T KOG4244|consen 130 AQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAIGDFESAEIDELLH 209 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccccCcCHHHHHHHHH
Confidence 88888777776544333221 1110 01111344566778
Q ss_pred HHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHHHHhh-hhcCCCCCCCcHHHHHHHHHhhc
Q 027827 129 ELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAIQEAL-EVKLFTEDRFPKLYRWSEEFVNC 193 (218)
Q Consensus 129 ~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~-~~~~~~~~~~p~l~~w~~~~~~~ 193 (218)
+-|+.++..|++.+||+|+++|-+|+++|+.|..+.+. ... ..+++ .+++|+|.+|++|+.+.
T Consensus 210 rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~YP-~~~~i~d~l-e~d~p~l~eYceRIr~~ 273 (281)
T KOG4244|consen 210 RDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYYP-FRSHISDLL-EGDFPNLLEYCERIRKE 273 (281)
T ss_pred HHHHHHHHHhCCCccccCCCCCcceeeehhhhhheecc-CCCcHHHHH-hhhchHHHHHHHHHHHH
Confidence 89999999999999999999999999999999887552 111 12333 57999999999999874
No 30
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.82 E-value=5.2e-20 Score=117.49 Aligned_cols=74 Identities=23% Similarity=0.293 Sum_probs=66.4
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCC-CchhhhhhCCCCCcccEEEe--CCeEeeecHHHHHHHHhcC
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSN-KSPLLLQYNSIHKKVPVLVH--KGNPIAESRVILEYIDDTW 77 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~--~g~~i~eS~~I~~yL~~~~ 77 (218)
+++||+++.||+|+|++++|.++||+|+.+.++... ..+++.+.||. |+||+|++ +|..++||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCC-CcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 489999999999999999999999999999886543 46789999999 89999996 4789999999999999864
No 31
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.80 E-value=2e-19 Score=113.98 Aligned_cols=71 Identities=31% Similarity=0.416 Sum_probs=65.8
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCC---CCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHh
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS---NKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDD 75 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~ 75 (218)
|+||+++.||+|++++++|+++|++|+.+.++.. ...+++.+.||. |+||+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQ-HTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcC-CCCCEEEECCEEEEcHHHHHHHHhC
Confidence 6899999999999999999999999999999865 346899999999 8999999999999999999999974
No 32
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.80 E-value=2.5e-19 Score=112.62 Aligned_cols=68 Identities=32% Similarity=0.451 Sum_probs=64.5
Q ss_pred EEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEe-CCeEeeecHHHHHHH
Q 027827 5 QLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVH-KGNPIAESRVILEYI 73 (218)
Q Consensus 5 ~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~-~g~~i~eS~~I~~yL 73 (218)
+||+++.||||+|++++|+++|++|+.+.++...+.++|.++||. |+||+|++ ||..++||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~-~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPK-GTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCC-CCCCEEEECCCcEEecHHHHHHhh
Confidence 799999999999999999999999999999988778899999999 89999997 599999999999996
No 33
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.80 E-value=3.8e-19 Score=113.33 Aligned_cols=72 Identities=33% Similarity=0.526 Sum_probs=66.7
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCC---CCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhc
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS---NKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDT 76 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~ 76 (218)
++||+++.||+|+++|++|+++|++|+.+.++.. +..++|.++||. |++|+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~-~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF-GQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 7999999999999999999999999999988875 456889999999 89999999999999999999999863
No 34
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.79 E-value=2.1e-19 Score=113.48 Aligned_cols=73 Identities=14% Similarity=0.062 Sum_probs=67.1
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhc
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDT 76 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~ 76 (218)
.++||+++.|++|+++|++|+++|++|+.+.++.....+++..+||. |++|+|+++|.+++||.+|++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLF-GQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCC-CCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 37999999999999999999999999999999876556688999999 89999999999999999999999863
No 35
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.79 E-value=6.7e-19 Score=112.17 Aligned_cols=73 Identities=30% Similarity=0.370 Sum_probs=66.9
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCCC---CchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSN---KSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTW 77 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~ 77 (218)
++||+++.|++|++++++|+++|++|+.+.++... ..+++.+.||. |++|+|+++|.+++||.+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF-GKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 58999999999999999999999999999998753 35789999999 899999999999999999999999864
No 36
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.79 E-value=5.9e-18 Score=118.31 Aligned_cols=124 Identities=46% Similarity=0.705 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHHH
Q 027827 88 HERANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAIQ 167 (218)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~ 167 (218)
.+++++++|+.+.++.+.+.+...+...++. .+.....+.+.|+.+|++|++++|++|+++|+||+++++.+.++....
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~ 80 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEE-REKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFRAYE 80 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHH-HHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 4688999999999888888777666544333 667788999999999999998999999999999999999998875543
Q ss_pred HhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChhhHHHHhhh
Q 027827 168 EALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRDKLISFMRR 212 (218)
Q Consensus 168 ~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~ 212 (218)
...+...+....+|++.+|+++++++|+++++.+..+...+++++
T Consensus 81 ~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~ 125 (126)
T cd03185 81 EVGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDRDKLVEFAKA 125 (126)
T ss_pred HHcCccccCcccCchHHHHHHHHHhccHHHHhCCCHHHHHHHHHh
Confidence 322322222357999999999999999999999999988887765
No 37
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.78 E-value=7.2e-19 Score=113.42 Aligned_cols=74 Identities=26% Similarity=0.412 Sum_probs=67.4
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCC---CCchhhhhhCCCCCcccEEEeC---CeEeeecHHHHHHHHhc
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS---NKSPLLLQYNSIHKKVPVLVHK---GNPIAESRVILEYIDDT 76 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~---g~~i~eS~~I~~yL~~~ 76 (218)
+++||+++. |+|++++++|+++||+|+.+.++.. ..+++|.++||. |+||+|+++ |.+|+||.+|++||+++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~g~~l~eS~aI~~yL~~~ 78 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN-GRIPAIVDHNGTPLTVFESGAILLYLAEK 78 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC-CCCCEEEeCCCCceEEEcHHHHHHHHHHH
Confidence 479999986 9999999999999999999999864 456899999999 899999986 89999999999999998
Q ss_pred CC
Q 027827 77 WK 78 (218)
Q Consensus 77 ~~ 78 (218)
++
T Consensus 79 ~~ 80 (81)
T cd03048 79 YD 80 (81)
T ss_pred hC
Confidence 75
No 38
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.77 E-value=1.3e-18 Score=109.90 Aligned_cols=70 Identities=34% Similarity=0.552 Sum_probs=64.9
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCC---CCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHH
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS---NKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYID 74 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~ 74 (218)
++||+++.||+|++++++|+++|++|+.+.++.. +..++|.+.||. |++|+|+++|.+++||.+|++||.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN-GEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999864 357889999999 899999999999999999999984
No 39
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.77 E-value=1.4e-18 Score=109.16 Aligned_cols=70 Identities=24% Similarity=0.314 Sum_probs=61.7
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeC-CeEeeecHHHHHHHHh
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHK-GNPIAESRVILEYIDD 75 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~-g~~i~eS~~I~~yL~~ 75 (218)
|+||++..||||+|+|++|+++|++|+.+.++... .....+.+|. +++|+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~-~~~~~~~~~~-~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD-EATPIRMIGA-KQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc-hHHHHHhcCC-CccCEEEeCCCeEeehHHHHHHHHhC
Confidence 68999999999999999999999999999887543 3345678998 899999975 8999999999999974
No 40
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.77 E-value=1.3e-17 Score=118.97 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHHH
Q 027827 88 HERANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAIQ 167 (218)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~ 167 (218)
+.++.++.|++|..+.+.+.+...+....++..+.....+.+.|+.+|++|++++|++|+++|+||+++++.+.++....
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~~~~ 82 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFDAVY 82 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHHHHh
Confidence 36788999999999998887766644433343777888999999999999998999999999999999999887653211
Q ss_pred -HhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChhhHHHHhhhcccCC
Q 027827 168 -EALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRDKLISFMRRRYGLS 217 (218)
Q Consensus 168 -~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 217 (218)
............+|+|.+|++++.++|++++++.......+|++++++-|
T Consensus 83 ~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~~~~~~~~~~~~~~~~ 133 (142)
T cd03190 83 VQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNFDHIKQHYYGSHFPLN 133 (142)
T ss_pred hhhcccccchhhhCchHHHHHHHHhcCchHhhhcCHHHHHHHHHhhcCCCC
Confidence 11010111124899999999999999999999999999999999997754
No 41
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.77 E-value=1.6e-18 Score=109.49 Aligned_cols=70 Identities=29% Similarity=0.425 Sum_probs=65.4
Q ss_pred eEEecccCChhHHHHHHHHHH--cCCCceeeecCCCCCchhhhhhCCCCCcccEEE-eCCeEeeecHHHHHHHH
Q 027827 4 VQLFGLWGSFFSHRIEIALKL--KGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV-HKGNPIAESRVILEYID 74 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~--~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~g~~i~eS~~I~~yL~ 74 (218)
|+||++..||+|+|+|++|++ +|++|+.+.++...+.+++++.||. |++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPL-GKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCC-CCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999999877778899999999 8999998 58899999999999985
No 42
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.77 E-value=2e-18 Score=113.17 Aligned_cols=71 Identities=30% Similarity=0.458 Sum_probs=66.3
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeC-CeEeeecHHHHHHHH
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHK-GNPIAESRVILEYID 74 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~-g~~i~eS~~I~~yL~ 74 (218)
+++||+++.||+|++++++|+++|++|+.+.++.....+++.+.||. +++|+|+++ |..++||.+|++||+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~-~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQ-GKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCC-CCcCEEEECCCCEEECHHHHHHhhC
Confidence 48999999999999999999999999999999887767789999999 899999976 899999999999985
No 43
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.77 E-value=1.4e-17 Score=125.85 Aligned_cols=182 Identities=18% Similarity=0.314 Sum_probs=125.3
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHh-------
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDD------- 75 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~------- 75 (218)
+++||.|..||||-|||.+|.++||+|+++.|+.-.+ .+. +-+. |.+||.|...|+.+.||.+|+.-|..
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r-~eI-k~Ss-ykKVPil~~~Geqm~dSsvIIs~laTyLq~~~q 166 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLR-QEI-KWSS-YKKVPILLIRGEQMVDSSVIISLLATYLQDKRQ 166 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhh-hhc-cccc-cccccEEEeccceechhHHHHHHHHHHhccCCC
Confidence 4899999999999999999999999999999986532 121 2233 37999999878889999999887732
Q ss_pred -------cCCCCCC------------------C----C-CCHHHHHHHHHHHHHhhhhhhHHHHH--------------h
Q 027827 76 -------TWKGHPI------------------L----P-ENPHERANARFWAQFIDEKCRVALRN--------------A 111 (218)
Q Consensus 76 -------~~~~~~l------------------~----p-~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 111 (218)
.||..+. + | .+.+.+..-+.|-+|+++.+--.+.. +
T Consensus 167 ~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFew 246 (370)
T KOG3029|consen 167 DLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEW 246 (370)
T ss_pred CHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHH
Confidence 2231000 0 0 11122334566777776654333221 1
Q ss_pred hcCc-------------------------------chHHHHHHHHHHHHHHHHHHHHhc-CCCeecCCCCChhHHHHHHH
Q 027827 112 YGCQ-------------------------------EKEREEEATREACELLKTLENELK-NRRFFGGDKIGLVDIVANFI 159 (218)
Q Consensus 112 ~~~~-------------------------------~~~~~~~~~~~~~~~l~~le~~L~-~~~fl~G~~~t~aD~~l~~~ 159 (218)
|... ........++.+.++++.+-..|+ +++|+.|++|++||+.+|++
T Consensus 247 f~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGv 326 (370)
T KOG3029|consen 247 FSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGV 326 (370)
T ss_pred HHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhh
Confidence 1100 001123357778888888888885 68999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhh
Q 027827 160 GFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVN 192 (218)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 192 (218)
|+.+..+... .+++ ...++..|+.+|++
T Consensus 327 l~sm~gc~af--kd~~---q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 327 LRSMEGCQAF--KDCL---QNTSIGEWYYRMEA 354 (370)
T ss_pred hhHhhhhhHH--HHHH---hcchHHHHHHHHHH
Confidence 9998765432 2233 56799999999986
No 44
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.77 E-value=2.1e-18 Score=108.96 Aligned_cols=70 Identities=27% Similarity=0.370 Sum_probs=64.4
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCC---CCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHH
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS---NKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYID 74 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~ 74 (218)
|+||+++.||++++++++|+++|++|+.+.++.. ...++|.++||. |++|+|+++|.+|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~-~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN-GRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC-CCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999988753 346889999999 899999999999999999999984
No 45
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.76 E-value=1.5e-18 Score=109.35 Aligned_cols=71 Identities=24% Similarity=0.232 Sum_probs=64.0
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCCC-CchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHh
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSN-KSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDD 75 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~ 75 (218)
++||+++.|++|+++|++|+++|++|+.+.++... ..+++.+.||. |++|+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPF-GQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcC-CCCCEEEECCEEEEecHHHHHHhhC
Confidence 68999999999999999999999999999988653 23458899999 8999999999999999999999974
No 46
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.76 E-value=2.3e-18 Score=109.30 Aligned_cols=70 Identities=29% Similarity=0.376 Sum_probs=65.4
Q ss_pred EEecccCChhHHHHHHHHHHcCCCceeeecCCC--CCchhhhhhCCCCCcccEEEe-CCeEeeecHHHHHHHHh
Q 027827 5 QLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS--NKSPLLLQYNSIHKKVPVLVH-KGNPIAESRVILEYIDD 75 (218)
Q Consensus 5 ~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~vP~l~~-~g~~i~eS~~I~~yL~~ 75 (218)
+||+++.||+|++++++|+++|++|+.+.++.. +..++|+++||. |++|+|++ +|.+++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~-~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL-GKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC-CCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999999999999876 567899999999 89999996 68999999999999985
No 47
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.76 E-value=2.1e-18 Score=109.22 Aligned_cols=70 Identities=31% Similarity=0.481 Sum_probs=64.0
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCC---CCchhhhhhCCCCCcccEEE-eCCeEeeecHHHHHHHH
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS---NKSPLLLQYNSIHKKVPVLV-HKGNPIAESRVILEYID 74 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~-~~g~~i~eS~~I~~yL~ 74 (218)
|+||+++.||+|+|+|++|.++|++|+.+.++.. ...+++.+.||. |++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPA-GTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCC-CCCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999999999999998864 346789999999 8999999 58889999999999985
No 48
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.75 E-value=4.3e-18 Score=107.53 Aligned_cols=70 Identities=37% Similarity=0.578 Sum_probs=65.0
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCC---CCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHH
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS---NKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYID 74 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~ 74 (218)
|+||++..|++|+++|++|+++|++|+.+.++.. ...+++.+.||. |++|+|+++|.+++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ-GLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999874 456889999999 899999999999999999999985
No 49
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.7e-17 Score=117.27 Aligned_cols=180 Identities=14% Similarity=0.170 Sum_probs=127.1
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEE-eCCeEeeecHHHHHHHHhcCCCCCC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV-HKGNPIAESRVILEYIDDTWKGHPI 82 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~g~~i~eS~~I~~yL~~~~~~~~l 82 (218)
|+||-|.+||||-|+|+++-.+|||++...+.-++......-++- .+||+|+ ++|.-+.||..|++|+++..+.+-+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~--KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~l 78 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQ--KQVPILQKEDGRAMPESLDIVHYVDELDGKPLL 78 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcc--cccceEEccccccchhhhHHHHHHHHhcCchhh
Confidence 689999999999999999999999999998876654333333333 5899999 7999999999999999999865433
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHH----H-------------HhhcCcchH----------HHHHHHHHHHHHHHHHH
Q 027827 83 LPENPHERANARFWAQFIDEKCRVAL----R-------------NAYGCQEKE----------REEEATREACELLKTLE 135 (218)
Q Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~~~----~-------------~~~~~~~~~----------~~~~~~~~~~~~l~~le 135 (218)
-+. .+..+..|+.-+.+...... . .+|....++ .......++...|+.++
T Consensus 79 t~~---~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~ 155 (215)
T COG2999 79 TGK---VRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALD 155 (215)
T ss_pred ccC---cCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHH
Confidence 222 23344555554444322221 1 122211111 13456788899999999
Q ss_pred HHhcCCCeecCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhh
Q 027827 136 NELKNRRFFGGDKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIK 197 (218)
Q Consensus 136 ~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 197 (218)
..+.+..-+.| .+++-|+.+|++|+.+- .+.|..|. .++..|+++|.+...+.
T Consensus 156 ~Li~~~s~~n~-~l~~ddi~vFplLRnlt---~v~gi~wp-----s~v~dy~~~msektqV~ 208 (215)
T COG2999 156 KLIVGPSAVNG-ELSEDDILVFPLLRNLT---LVAGIQWP-----SRVADYRDNMSEKTQVN 208 (215)
T ss_pred HHhcCcchhcc-ccchhhhhhhHHhccce---ecccCCCc-----HHHHHHHHHHHHhhCcc
Confidence 99977665555 59999999999998873 22244443 48999999999866543
No 50
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5.3e-18 Score=127.89 Aligned_cols=211 Identities=19% Similarity=0.267 Sum_probs=156.3
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCC--ceeeecCCC--CC----ch------------------hhhhhCCCC---Ccc
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVE--YEFIEEDLS--NK----SP------------------LLLQYNSIH---KKV 53 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~--~~~~~v~~~--~~----~~------------------~~~~~~p~~---~~v 53 (218)
.+.||..-.|||++|..+.-+++|++ ..+..|++. .+ .+ -|....|.| -+|
T Consensus 51 RYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTV 130 (324)
T COG0435 51 RYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTV 130 (324)
T ss_pred eEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeE
Confidence 47899999999999999999999998 333344332 11 00 122333421 369
Q ss_pred cEEEeC--C-eEeeecHHHHHHHHhcCCC-----CCCCCCCHHHHHHHHHHHHHhhhhhhHHHHH-hhcCcchHHHHHHH
Q 027827 54 PVLVHK--G-NPIAESRVILEYIDDTWKG-----HPILPENPHERANARFWAQFIDEKCRVALRN-AYGCQEKEREEEAT 124 (218)
Q Consensus 54 P~l~~~--g-~~i~eS~~I~~yL~~~~~~-----~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 124 (218)
|+|.|. . .+-.||..|++.+...|.+ ..++|.+ .+.+++.+.+++...+-..+.. -|....+. -+++.
T Consensus 131 PVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~a-Yeea~ 207 (324)
T COG0435 131 PVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--LRTEIDELNKWIYDTVNNGVYKAGFATTQEA-YEEAV 207 (324)
T ss_pred EEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--HHHHHHHHHhhhcccccCceeeecccchHHH-HHHHH
Confidence 999973 2 3348999999999877632 2467766 6888888888887665443332 23334444 77788
Q ss_pred HHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHH--HHh-hhhcCCCCCCCcHHHHHHHHHhhcchhhccCC
Q 027827 125 REACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAI--QEA-LEVKLFTEDRFPKLYRWSEEFVNCSIIKESLP 201 (218)
Q Consensus 125 ~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~--~~~-~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 201 (218)
..+-..|+.||+.|+++.|++|+++|-||+-+|+.|-++... .+. .+..-+ .+||+|..|...+.+.|.|+.+..
T Consensus 208 ~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI--~dypnL~~yLr~LYq~pg~~~T~d 285 (324)
T COG0435 208 KKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRI--RDYPNLWGYLRDLYQLPGFAETVD 285 (324)
T ss_pred HHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchh--hcCchHHHHHHHHhcCcccccccc
Confidence 889999999999999999999999999999999988777321 000 122223 369999999999999999999999
Q ss_pred ChhhHHHHhhhcccCCC
Q 027827 202 PRDKLISFMRRRYGLSS 218 (218)
Q Consensus 202 ~~~~~~~~~~~~~~~~~ 218 (218)
-..+..+|..++...||
T Consensus 286 f~hIK~hYyrSh~~INP 302 (324)
T COG0435 286 FDHIKLHYYRSHTTINP 302 (324)
T ss_pred hhHhhhhheecccccCC
Confidence 99999999999988875
No 51
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.75 E-value=5.6e-18 Score=107.86 Aligned_cols=73 Identities=32% Similarity=0.425 Sum_probs=66.3
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCC---CCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcCC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS---NKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTWK 78 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~~ 78 (218)
|+||+++. +++++++++|+++|++|+.+.++.. .+.+++.+.||. +++|+|+++|.+++||.+|++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL-GKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58999876 6899999999999999999999864 567899999999 8999999999999999999999998874
No 52
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.75 E-value=6.4e-18 Score=107.88 Aligned_cols=73 Identities=33% Similarity=0.460 Sum_probs=65.5
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCC---CCchhhhhhCCCCCcccEEEeC-CeEeeecHHHHHHHHhcCC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS---NKSPLLLQYNSIHKKVPVLVHK-GNPIAESRVILEYIDDTWK 78 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~-g~~i~eS~~I~~yL~~~~~ 78 (218)
|+||+++.| .++++|++|+++|++|+.+.++.. +..++++++||. |++|+|+++ |.+++||.+|++||+++||
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~-~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPK-GQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCC-CCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589999876 589999999999999999988875 347899999999 899999976 8999999999999999875
No 53
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.74 E-value=6e-18 Score=105.81 Aligned_cols=65 Identities=46% Similarity=0.653 Sum_probs=56.5
Q ss_pred CChhHHHHHHHHHHcCCCceeeecCC----CCCchhhhhhCCCCCcccEEEe-CCeEeeecHHHHHHHHhc
Q 027827 11 GSFFSHRIEIALKLKGVEYEFIEEDL----SNKSPLLLQYNSIHKKVPVLVH-KGNPIAESRVILEYIDDT 76 (218)
Q Consensus 11 ~sp~~~~~r~~l~~~gi~~~~~~v~~----~~~~~~~~~~~p~~~~vP~l~~-~g~~i~eS~~I~~yL~~~ 76 (218)
+||||+|++++|+++|++|+...+.. ..+.++|.++||. |+||+|++ +|.++.||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-GKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC-eEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999988843 2456899999999 89999997 899999999999999864
No 54
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.74 E-value=8.5e-18 Score=107.31 Aligned_cols=72 Identities=24% Similarity=0.460 Sum_probs=62.6
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeC----CeEeeecHHHHHHHHhcC
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHK----GNPIAESRVILEYIDDTW 77 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~----g~~i~eS~~I~~yL~~~~ 77 (218)
+++||+++.||+|+|++++|.++||+|+.+.++.... ++ ...||. ++||+|+++ |.+++||.+|++||++..
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~-~~-~~~~~~-~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSR-KE-IKWSSY-KKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhH-HH-HHHhCC-CccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 5899999999999999999999999999998875432 33 356998 899999954 789999999999999864
No 55
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.2e-17 Score=124.93 Aligned_cols=212 Identities=18% Similarity=0.209 Sum_probs=153.9
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCC--ceeeecCC-C-CCch------------------------------hhhhhCC
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVE--YEFIEEDL-S-NKSP------------------------------LLLQYNS 48 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~--~~~~~v~~-~-~~~~------------------------------~~~~~~p 48 (218)
.+.||..-.|||++|+.+.++.+|++ .-...+.+ . ++.. -|...+|
T Consensus 37 ryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p 116 (319)
T KOG2903|consen 37 RYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASP 116 (319)
T ss_pred eEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCC
Confidence 47899999999999999999999987 22223333 1 1000 0222233
Q ss_pred CC---CcccEEEeC---CeEeeecHHHHHHHHhcC---------CCCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHH-hh
Q 027827 49 IH---KKVPVLVHK---GNPIAESRVILEYIDDTW---------KGHPILPENPHERANARFWAQFIDEKCRVALRN-AY 112 (218)
Q Consensus 49 ~~---~~vP~l~~~---g~~i~eS~~I~~yL~~~~---------~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 112 (218)
.| -+||+|.|- ..+--||..|++.+...| +.-.|+|.+ .+++++.+.+|+.+.+-..+.. -|
T Consensus 117 ~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~--L~~~Ide~N~wvy~~INNGVYk~GF 194 (319)
T KOG2903|consen 117 NYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSS--LRAQIDETNSWVYDKINNGVYKCGF 194 (319)
T ss_pred CCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHH--HHHHHhhhhceecccccCceeeecc
Confidence 21 269999984 344589999999998333 222466655 7889999999988776544433 24
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHhcCCC--eecCCCCChhHHHHHHHHHHHHHH-HHh--hhhcCCCCCCCcHHHHHH
Q 027827 113 GCQEKEREEEATREACELLKTLENELKNRR--FFGGDKIGLVDIVANFIGFWLGAI-QEA--LEVKLFTEDRFPKLYRWS 187 (218)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~le~~L~~~~--fl~G~~~t~aD~~l~~~l~~~~~~-~~~--~~~~~~~~~~~p~l~~w~ 187 (218)
....+. -+.....+-..|+.+|..|+++. |++|+++|-|||.+++.+.++... ... .....+ .++||+|..|.
T Consensus 195 A~~~e~-Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~i-r~~Yp~l~~~l 272 (319)
T KOG2903|consen 195 AEKQEA-YEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTI-RDEYPNLHNWL 272 (319)
T ss_pred ccccch-HHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhh-hccCcHHHHHH
Confidence 444444 67778888999999999999876 999999999999999988777321 111 122233 46999999999
Q ss_pred HHHhh-cchhhccCCChhhHHHHhhhcccCCC
Q 027827 188 EEFVN-CSIIKESLPPRDKLISFMRRRYGLSS 218 (218)
Q Consensus 188 ~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~ 218 (218)
+.+-. .|+|+.+..-..+...|.+++...|+
T Consensus 273 k~iY~~~~~~~~Ttd~~hIk~~Y~~S~~~iNp 304 (319)
T KOG2903|consen 273 KNIYWNIPGFSSTTDFNHIKLHYYRSHPRINP 304 (319)
T ss_pred HHHHhhccchhhccchhHHhhhhccccCccCc
Confidence 99998 99999999999999999988877664
No 56
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.73 E-value=1.4e-17 Score=105.76 Aligned_cols=68 Identities=24% Similarity=0.424 Sum_probs=61.4
Q ss_pred ceEEeccc-------CChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHh
Q 027827 3 EVQLFGLW-------GSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDD 75 (218)
Q Consensus 3 ~~~L~~~~-------~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~ 75 (218)
+++||++. .||+|+|++++|+++|++|+.+.++.. +.||. |++|+|+++|.+++||.+|++||++
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-------~~~p~-g~vPvl~~~g~~l~eS~~I~~yL~~ 72 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-------KRSPK-GKLPFIELNGEKIADSELIIDHLEE 72 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-------cCCCC-CCCCEEEECCEEEcCHHHHHHHHHH
Confidence 36899988 689999999999999999999888642 68998 8999999999999999999999999
Q ss_pred cCC
Q 027827 76 TWK 78 (218)
Q Consensus 76 ~~~ 78 (218)
+|+
T Consensus 73 ~~~ 75 (75)
T cd03080 73 KYG 75 (75)
T ss_pred HcC
Confidence 874
No 57
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.71 E-value=4.9e-17 Score=104.12 Aligned_cols=72 Identities=24% Similarity=0.281 Sum_probs=62.5
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhC-----CCCCcccEEEeCCeEeeecHHHHHHHHhcC
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYN-----SIHKKVPVLVHKGNPIAESRVILEYIDDTW 77 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~-----p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~ 77 (218)
+++||+++.|+.|++++++|+++|++|+.+.++.. +++.+.+ |+ |+||+|++||.+|+||.||++||.+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~-g~vP~L~~~g~~l~ES~AI~~YL~~~~ 76 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMF-QQVPMVEIDGMKLVQTRAILNYIAGKY 76 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCC-CCCCEEEECCEEEeeHHHHHHHHHHHc
Confidence 46899999999999999999999999999988753 3333333 57 899999999999999999999999987
Q ss_pred C
Q 027827 78 K 78 (218)
Q Consensus 78 ~ 78 (218)
+
T Consensus 77 ~ 77 (79)
T cd03077 77 N 77 (79)
T ss_pred C
Confidence 6
No 58
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.70 E-value=6.1e-17 Score=104.36 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=61.9
Q ss_pred EEecccCChhHHHHHHHHHHcCCCceeeecCCCCC----chhhhh-h----CCCCCcccEEEeCCeEeeecHHHHHHHHh
Q 027827 5 QLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNK----SPLLLQ-Y----NSIHKKVPVLVHKGNPIAESRVILEYIDD 75 (218)
Q Consensus 5 ~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~----~~~~~~-~----~p~~~~vP~l~~~g~~i~eS~~I~~yL~~ 75 (218)
+||++..++.|+++|++|+++||+|+.+.+++... .+++.. . +|+ |+||+|+++|.+++||.||++||++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~-g~vP~L~~~g~~l~ES~AIl~YLa~ 80 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDF-PNLPYYIDGDVKLTQSNAILRYIAR 80 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcC-CCCCEEEECCEEEeehHHHHHHHhh
Confidence 79999999999999999999999999999987531 234432 2 298 8999999999999999999999987
Q ss_pred cC
Q 027827 76 TW 77 (218)
Q Consensus 76 ~~ 77 (218)
++
T Consensus 81 ~~ 82 (82)
T cd03075 81 KH 82 (82)
T ss_pred cC
Confidence 64
No 59
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.70 E-value=3.7e-16 Score=108.91 Aligned_cols=120 Identities=26% Similarity=0.377 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhcC--CCeecCCCCChhHHHHHHHHHHHHHH
Q 027827 89 ERANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELKN--RRFFGGDKIGLVDIVANFIGFWLGAI 166 (218)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~fl~G~~~t~aD~~l~~~l~~~~~~ 166 (218)
++++.+.|++++...+.+. ...+.. ++. .++..+.+.+.|+.+|+.|++ ++|++|+++|+||+++++.+.++...
T Consensus 2 ~ra~~r~~~~~~~~~~~~~-~~~~~~-~~~-~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~ 78 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAF-YKLLGA-PSD-REEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEAL 78 (124)
T ss_pred hHHHHHHHHHHHhhhhHHH-HHHHhc-ccc-chhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHH
Confidence 5889999999997444444 444444 444 677888999999999999975 79999999999999999988777544
Q ss_pred HHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChhhHHHHhhh
Q 027827 167 QEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRDKLISFMRR 212 (218)
Q Consensus 167 ~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~ 212 (218)
....+ .....+.+|+|++|++++.++|++++++...+++.++++-
T Consensus 79 ~~~~~-~~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~~~~~~~~~~ 123 (124)
T cd03184 79 KLLLG-YEFPLDRFPKLKKWMDAMKEDPAVQAFYTDTEIHAEFLKS 123 (124)
T ss_pred Hhhcc-ccCCcccChHHHHHHHHhccChHHHHHhCCHHHHHHHHhc
Confidence 32111 1122458999999999999999999999999998888764
No 60
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.70 E-value=3.9e-16 Score=105.95 Aligned_cols=105 Identities=22% Similarity=0.254 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHHH
Q 027827 88 HERANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAIQ 167 (218)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~ 167 (218)
.++++++.|+.++++.+.+.+...+...++. .+...+.+.+.|..+|++|++++|++|+++|+|||++++.+.+...
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~-- 78 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKGRKKE-AEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRLPA-- 78 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHHHH--
Confidence 4789999999999998888877665544333 6677889999999999999999999999999999999998755431
Q ss_pred HhhhhcCCCCCCCcHHHHHHHHHhhcchhhcc
Q 027827 168 EALEVKLFTEDRFPKLYRWSEEFVNCSIIKES 199 (218)
Q Consensus 168 ~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~ 199 (218)
.+.+.. ..+|+|.+|++++.+||+++++
T Consensus 79 --~~~~~~--~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 79 --LGIELP--KQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred --cCCCCc--ccchHHHHHHHHHHCCHHHHHh
Confidence 133332 3799999999999999999875
No 61
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.69 E-value=6.5e-17 Score=104.95 Aligned_cols=67 Identities=27% Similarity=0.384 Sum_probs=58.7
Q ss_pred cCChhHHHHHHHHHHcCCCceeeecCCCCC---chhhhhhCCCCCcccEEEeC-CeEeeecHHHHHHHHhcCC
Q 027827 10 WGSFFSHRIEIALKLKGVEYEFIEEDLSNK---SPLLLQYNSIHKKVPVLVHK-GNPIAESRVILEYIDDTWK 78 (218)
Q Consensus 10 ~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~---~~~~~~~~p~~~~vP~l~~~-g~~i~eS~~I~~yL~~~~~ 78 (218)
..||+|+|+|++|.++||+|+.+.++.... .+++ +.||. |++|+|+++ |..++||.+|++||+++||
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~-~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGF-YTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCC-ceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 579999999999999999999998886533 2344 78999 899999998 8999999999999999875
No 62
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.68 E-value=1.8e-16 Score=100.77 Aligned_cols=72 Identities=39% Similarity=0.497 Sum_probs=59.3
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCC---CCchhhhhhCCCCCcccEEEeC-CeEeeecHHHHHHHHh
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS---NKSPLLLQYNSIHKKVPVLVHK-GNPIAESRVILEYIDD 75 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~-g~~i~eS~~I~~yL~~ 75 (218)
|+|+.++..++++++|++|+++|++|+.+.+++. ++.++|++.||..|++|+|+++ |.+++||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 3455555555999999999999999999999875 3349999999962599999998 9999999999999975
No 63
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.68 E-value=7.7e-16 Score=105.83 Aligned_cols=112 Identities=22% Similarity=0.319 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHHhhhhhhHHHHHhhcC--cchHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHH
Q 027827 85 ENPHERANARFWAQFIDEKCRVALRNAYGC--QEKEREEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFW 162 (218)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~ 162 (218)
.++..++++++|+.+....+.+.+...... ......+...+.+.+.++.+|++|++++|++|+++|+||+++++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~~ 81 (115)
T cd03196 2 QDPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVRQ 81 (115)
T ss_pred CchHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHHH
Confidence 367889999999999999988877763321 111126677889999999999999999999999999999999998766
Q ss_pred HHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccC
Q 027827 163 LGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESL 200 (218)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 200 (218)
+... ....+...++|+|.+|++++.++|++++++
T Consensus 82 ~~~~----~~~~~~~~~~P~L~~w~~r~~~rpa~~~~~ 115 (115)
T cd03196 82 FAHV----DPKWFDQSPYPRLRRWLNGFLASPLFSKIM 115 (115)
T ss_pred HHHh----hhcccCcccCHHHHHHHHHHHcChHHHhhC
Confidence 5322 111222368999999999999999999853
No 64
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.67 E-value=2.8e-16 Score=99.10 Aligned_cols=66 Identities=32% Similarity=0.357 Sum_probs=60.0
Q ss_pred cccCChhHHHHHHHHHHcCCCceeeecCCCC--CchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHH
Q 027827 8 GLWGSFFSHRIEIALKLKGVEYEFIEEDLSN--KSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYID 74 (218)
Q Consensus 8 ~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~--~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~ 74 (218)
....||++++++++|+++|++|+.+.++... ..++|.++||. |++|+|+++|.+++||.+|++||.
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPT-GKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCC-CcCCEEEECCEEEEcHHHHHHHhC
Confidence 4567999999999999999999999998763 45889999999 899999999999999999999984
No 65
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.67 E-value=8.6e-16 Score=105.32 Aligned_cols=105 Identities=17% Similarity=0.299 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhcCc--------chHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHH
Q 027827 89 ERANARFWAQFIDEKCRVALRNAYGCQ--------EKEREEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIG 160 (218)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l 160 (218)
+++++++|+.+..+.+.+.+...+... .+...+...+.+.+.++.+|+.|++++|++|+++|+|||++++.+
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~ 81 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVL 81 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHH
Confidence 478999999999988888776443321 123345667889999999999999889999999999999999988
Q ss_pred HHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccC
Q 027827 161 FWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESL 200 (218)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 200 (218)
.++... + +...++|++.+|++++.++|++++++
T Consensus 82 ~~~~~~----~---~~~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 82 RWAPGV----G---LDLSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHhhc----C---CChhhChHHHHHHHHHHhCHHhHhhC
Confidence 776321 2 22347999999999999999999864
No 66
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.67 E-value=3.4e-16 Score=97.59 Aligned_cols=70 Identities=39% Similarity=0.553 Sum_probs=63.5
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCch-hhhhhCCCCCcccEEEeCCeEeeecHHHHHHHH
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSP-LLLQYNSIHKKVPVLVHKGNPIAESRVILEYID 74 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~-~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~ 74 (218)
++||+++.||+|++++++|+++|++|+.+.++...... ++.+.+|. +++|+|+++|.+++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL-GKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999998764333 48889998 899999999999999999999984
No 67
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.65 E-value=4.5e-15 Score=102.80 Aligned_cols=115 Identities=21% Similarity=0.282 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhc---CCCeecCCCCChhHHHHHHHHHH
Q 027827 86 NPHERANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELK---NRRFFGGDKIGLVDIVANFIGFW 162 (218)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~fl~G~~~t~aD~~l~~~l~~ 162 (218)
|+.+++++++++.+........+...+.+.. .+.+.+.++.||+.|+ +++|++| ++|+||+++++.+.+
T Consensus 1 d~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~ 72 (120)
T cd03203 1 DPAKREFADELLAYTDAFTKALYSSLIKGDP-------SAEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIER 72 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHH
Confidence 4668999999998833322222233333322 2244667788888886 4799999 999999999998876
Q ss_pred HHHH-HHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChhhHHHHh
Q 027827 163 LGAI-QEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRDKLISFM 210 (218)
Q Consensus 163 ~~~~-~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~ 210 (218)
+... ....+.++ .+++|+|.+|++++.++|+++++.+..+++.+++
T Consensus 73 ~~~~~~~~~~~~~--~~~~P~l~~W~~~~~~rp~~~~~~~~~~~~~~~~ 119 (120)
T cd03203 73 FQIFLSELFNYDI--TEGRPNLAAWIEEMNKIEAYTQTKQDPQELLDLA 119 (120)
T ss_pred HHHHHHHhcCccc--cccCcHHHHHHHHHhcchHHHhHcCCHHHHHhhh
Confidence 6431 22223333 2589999999999999999999999988887764
No 68
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.63 E-value=4.3e-15 Score=103.10 Aligned_cols=112 Identities=21% Similarity=0.196 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHHHH
Q 027827 89 ERANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAIQE 168 (218)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~ 168 (218)
+++.++++++.+.+.........+..+.+...+.....+.+.++.||++|++++|++|+++|+||+++++.+.++...
T Consensus 2 e~~~id~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~~-- 79 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMGLARICYSPDFEKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRIF-- 79 (121)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHHh--
Confidence 467788888877766544333334333344456677889999999999999889999999999999999988887532
Q ss_pred hhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChhhH
Q 027827 169 ALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRDKL 206 (218)
Q Consensus 169 ~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~ 206 (218)
....+ ..+|+|.+|++++.++|+++++++++...
T Consensus 80 --~~~~~--~~~P~l~~~~~rv~~~p~vk~~~~~~~~~ 113 (121)
T cd03209 80 --EPDCL--DAFPNLKDFLERFEALPKISAYMKSDRFI 113 (121)
T ss_pred --Ccccc--ccChHHHHHHHHHHHCHHHHHHHhcccCc
Confidence 22223 48999999999999999999998887653
No 69
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.62 E-value=1.8e-15 Score=95.20 Aligned_cols=65 Identities=26% Similarity=0.390 Sum_probs=57.7
Q ss_pred eEEeccc-------CChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhc
Q 027827 4 VQLFGLW-------GSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDT 76 (218)
Q Consensus 4 ~~L~~~~-------~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~ 76 (218)
++||.++ .||+|++++++|+++||||+.+.++... .||. |++|+|+++|..+.||.+|++||+++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-------~~p~-g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-------RSPT-GKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-------cCCC-cccCEEEECCEEEcCHHHHHHHHhhC
Confidence 4577666 8999999999999999999999887532 7898 89999999999999999999999864
No 70
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.62 E-value=1.2e-14 Score=101.42 Aligned_cols=109 Identities=14% Similarity=0.177 Sum_probs=83.9
Q ss_pred hhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhcC----------------CCeecCCCCChhHHHHHHHHHHH
Q 027827 100 IDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELKN----------------RRFFGGDKIGLVDIVANFIGFWL 163 (218)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~----------------~~fl~G~~~t~aD~~l~~~l~~~ 163 (218)
..+.+++.+..++.+...+..+...+.+...|+.||.+|++ ++|++|+++|+|||.+++.+.++
T Consensus 7 ~~~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~ 86 (134)
T cd03198 7 AGEDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIV 86 (134)
T ss_pred hHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 34455666666665544444777889999999999999986 67999999999999999998877
Q ss_pred HHHHH-hhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChhhHHHHh
Q 027827 164 GAIQE-ALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRDKLISFM 210 (218)
Q Consensus 164 ~~~~~-~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~ 210 (218)
..... ..+... ...+|+|.+|++++.+||+|++++...+++....
T Consensus 87 ~~~~~~~~g~~i--~~~~P~L~aw~~ri~aRPsfk~t~~~~~~i~~~~ 132 (134)
T cd03198 87 KVVAKKYRNFEI--PADLTGLWRYLKNAYQREEFTNTCPADQEIELAY 132 (134)
T ss_pred HHHHHhhcCCCc--cccCHHHHHHHHHHHCCHHHHHHcCCHHHHHHHh
Confidence 53211 112222 3589999999999999999999999997766543
No 71
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.61 E-value=1.8e-14 Score=99.24 Aligned_cols=105 Identities=19% Similarity=0.348 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHhhhhhhHHHHHhhcC------------cchHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhH
Q 027827 86 NPHERANARFWAQFIDEKCRVALRNAYGC------------QEKEREEEATREACELLKTLENELKNRRFFGGDKIGLVD 153 (218)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD 153 (218)
++.+++.+++|+.++++.+.+.+...+.. ..+...++....+.+.|+.+|++|++++|+.|+++|+||
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD 80 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD 80 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 46789999999999888877766544321 123346777889999999999999988999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchh
Q 027827 154 IVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSII 196 (218)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (218)
|++++.+.++... +.++ ...+|+|.+|++++.++|++
T Consensus 81 i~l~~~~~~~~~~----~~~~--~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 81 ITAFVGLDFAKVV----KLRV--PEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHhHHHHhc----CCCC--ccccHHHHHHHHHHHhccCC
Confidence 9999999877432 3333 34899999999999999974
No 72
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.57 E-value=2.7e-14 Score=99.08 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHH----hhc-C--c-chHHHHHHHHHHHHHHHHHHHHhc--CCCeecCCCCChhHHHHH
Q 027827 88 HERANARFWAQFIDEKCRVALRN----AYG-C--Q-EKEREEEATREACELLKTLENELK--NRRFFGGDKIGLVDIVAN 157 (218)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~----~~~-~--~-~~~~~~~~~~~~~~~l~~le~~L~--~~~fl~G~~~t~aD~~l~ 157 (218)
.+++.+++|+.++.+.+.+.... .+. . . .+...+...+.+.+.|+.+|++|+ +++|++|+++|+|||+++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 81 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLV 81 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHH
Confidence 46889999999988777654211 111 1 1 122223345678999999999997 457999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCCh
Q 027827 158 FIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPR 203 (218)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 203 (218)
+.+.+.... + ++...+|+|.+|++++.++|+++++.+.+
T Consensus 82 ~~~~~~~~~----~---~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 120 (121)
T cd03191 82 PQVYNARRF----G---VDLSPYPTIARINEACLELPAFQAAHPDN 120 (121)
T ss_pred HHHHHHHHh----C---CCcccCcHHHHHHHHHHhChhHHHhCcCc
Confidence 988766321 2 22358999999999999999999987643
No 73
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.57 E-value=2.6e-14 Score=98.71 Aligned_cols=106 Identities=23% Similarity=0.255 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhcC---cchHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHH
Q 027827 89 ERANARFWAQFIDEKCRVALRNAYGC---QEKEREEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGA 165 (218)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~ 165 (218)
+++++++|+.+..+.+.+.....+.. ......+.....+.+.|+.+|++|++++|++|+++|+||+++++++.++..
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~~ 81 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLEA 81 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHHH
Confidence 47888999988877766655443321 111225667888999999999999988999999999999999999888743
Q ss_pred HHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccC
Q 027827 166 IQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESL 200 (218)
Q Consensus 166 ~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 200 (218)
. .+ ++...+|+|.+|+++++++|++++..
T Consensus 82 ~---~~---~~~~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 82 L---LP---LDLSKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred h---cC---CChhhCchHHHHHHHHHcccchHHHH
Confidence 1 12 22347999999999999999999855
No 74
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.57 E-value=7.7e-14 Score=96.60 Aligned_cols=104 Identities=13% Similarity=0.183 Sum_probs=76.3
Q ss_pred hhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhcC-CCeecCCCCChhHHHHHHHHHHHHHHHHh-hhhcCCCCCCCc
Q 027827 104 CRVALRNAYGCQEKEREEEATREACELLKTLENELKN-RRFFGGDKIGLVDIVANFIGFWLGAIQEA-LEVKLFTEDRFP 181 (218)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~fl~G~~~t~aD~~l~~~l~~~~~~~~~-~~~~~~~~~~~p 181 (218)
+.+.+..++...++. ++..+.+.+.|..||..|++ ++|++|+++|+||+++++.+.++...... .+... .+.+|
T Consensus 14 ~~~~~~~~~~~~~~~--~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~--~~~~P 89 (121)
T cd03201 14 IFSTFVGFLKSKDSN--DGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSV--PESLT 89 (121)
T ss_pred HHHHHHHHHHCCcHH--HHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCC--cccch
Confidence 344444444433322 45667899999999999985 79999999999999999987766532111 11111 36899
Q ss_pred HHHHHHHHHhhcchhhccCCChhhHHHHhh
Q 027827 182 KLYRWSEEFVNCSIIKESLPPRDKLISFMR 211 (218)
Q Consensus 182 ~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~ 211 (218)
+|.+|++++.+||+|+++++..+++.+..+
T Consensus 90 ~l~~w~~rl~~rps~~~t~~~~~~~~~~~~ 119 (121)
T cd03201 90 SVKSYMKALFSRESFVKTKAEKEDVIAGWA 119 (121)
T ss_pred HHHHHHHHHHCCchhhhcCCCHHHHHHHhc
Confidence 999999999999999999998887665544
No 75
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.57 E-value=3.9e-14 Score=98.99 Aligned_cols=111 Identities=18% Similarity=0.105 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhcC---CCeecCCCCChhHHHHHHHHHHHHH
Q 027827 89 ERANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELKN---RRFFGGDKIGLVDIVANFIGFWLGA 165 (218)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~---~~fl~G~~~t~aD~~l~~~l~~~~~ 165 (218)
+++.++.+++.+.+...... ..+....+...+...+.+.+.|..||+.|++ ++|++|+++|+||+++++.+.++..
T Consensus 3 e~~~vd~~~~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~ 81 (126)
T cd03210 3 EAALIDMVNDGVEDLRLKYV-RMIYQNYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLV 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHH
Confidence 56778887777665543333 3333333333566677899999999999974 5899999999999999998888753
Q ss_pred HHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChhhH
Q 027827 166 IQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRDKL 206 (218)
Q Consensus 166 ~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~ 206 (218)
. .... ...+|+|.+|++++.++|++++++......
T Consensus 82 ~----~~~~--~~~~P~l~~~~~rv~~~p~v~~~~~~~~~~ 116 (126)
T cd03210 82 L----APGC--LDAFPLLKAFVERLSARPKLKAYLESDAFK 116 (126)
T ss_pred h----ChHh--hhcChHHHHHHHHHHhCcHHHHHHhCcCCC
Confidence 2 1222 348999999999999999999988876543
No 76
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.56 E-value=6.6e-14 Score=96.77 Aligned_cols=104 Identities=22% Similarity=0.263 Sum_probs=80.2
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhHHHHHh-hc----C---------cchHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCC
Q 027827 84 PENPHERANARFWAQFIDEKCRVALRNA-YG----C---------QEKEREEEATREACELLKTLENELKNRRFFGGDKI 149 (218)
Q Consensus 84 p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~---------~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~ 149 (218)
|.++.+++++++|+.+..+.+.+.+... +. . ......+.....+.+.|+.+|++|++++|++|+++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~ 81 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKL 81 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCC
Confidence 5678899999999999988777765432 11 1 11122344567899999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcc
Q 027827 150 GLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCS 194 (218)
Q Consensus 150 t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p 194 (218)
|+||+++++.+.+.... +. . ...+|+|.+|+++++++|
T Consensus 82 t~ADi~l~~~~~~~~~~----~~-~--~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 82 TAADIMMSFPLEAALAR----GP-L--LEKYPNIAAYLERIEARP 119 (119)
T ss_pred CHHHHHHHHHHHHHHHc----Cc-c--cccCchHHHHHHHHhcCC
Confidence 99999999988777432 21 1 358999999999999987
No 77
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.56 E-value=1.5e-14 Score=99.05 Aligned_cols=106 Identities=25% Similarity=0.308 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHh-----hcC-cchHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHH
Q 027827 89 ERANARFWAQFIDEKCRVALRNA-----YGC-QEKEREEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFW 162 (218)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~ 162 (218)
+++++++|+.+..+.+.+.+... +.. ..+...+.....+.+.|+.+|+.|++++|++|+++|+|||++++.+.+
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~ 80 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRR 80 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHH
Confidence 36788899998887776654432 121 223335667888999999999999988999999999999999998877
Q ss_pred HHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccC
Q 027827 163 LGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESL 200 (218)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 200 (218)
.... +... ...+|++.+|++++.++|++++++
T Consensus 81 ~~~~----~~~~--~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 81 LEWI----GIDD--LDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHhc----cccc--hhhchHHHHHHHHHhhCHHHHHhc
Confidence 7432 2222 347999999999999999999865
No 78
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.55 E-value=5.7e-14 Score=96.86 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHH-----hhc-----CcchHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHH
Q 027827 89 ERANARFWAQFIDEKCRVALRN-----AYG-----CQEKEREEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANF 158 (218)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~ 158 (218)
+++++.+|+.+..+.+.+.+.. .+. .......+.....+.+.++.||++|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 81 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLP 81 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHH
Confidence 4678888888877766555433 111 112233556778899999999999998999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccC
Q 027827 159 IGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESL 200 (218)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 200 (218)
++.++.... .... ...+|+|++|++++.++|++++++
T Consensus 82 ~~~~~~~~~---~~~~--~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 82 YLQYLMATP---FAKL--FDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHcc---chhh--hhcCchHHHHHHHHHhCHHHHhhC
Confidence 887764211 1111 347999999999999999998764
No 79
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.55 E-value=1.2e-13 Score=93.99 Aligned_cols=101 Identities=20% Similarity=0.342 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhc-----C---cchHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHH
Q 027827 89 ERANARFWAQFIDEKCRVALRNAYG-----C---QEKEREEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIG 160 (218)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l 160 (218)
+++++++|+.+..+.+.+.+...+. . ..+...+...+.+.+.|+.+|++|++++|++|+++|+||+++++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~ 81 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSA 81 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHH
Confidence 4778999999888887777654321 1 1223345678899999999999999889999999999999999887
Q ss_pred HHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchh
Q 027827 161 FWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSII 196 (218)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (218)
...... + ....++|+|.+|++++.++|+|
T Consensus 82 ~~~~~~----~---~~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 82 YRWFEL----P---IERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHc----c---cccccCchHHHHHHHHHhCCCC
Confidence 433211 1 1145899999999999999985
No 80
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.54 E-value=6.9e-14 Score=97.21 Aligned_cols=111 Identities=22% Similarity=0.281 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhc------CcchHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHH
Q 027827 90 RANARFWAQFIDEKCRVALRNAYG------CQEKEREEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWL 163 (218)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~ 163 (218)
++++++|+.++.+.+.+.+...+. ..+....+...+.+.+.|+.+|+.|++++|++|+++|+||+++++.+.+.
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~~ 81 (123)
T cd03181 2 EAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLLG 81 (123)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHHH
Confidence 678899999988887776654332 11223366778889999999999999889999999999999999988876
Q ss_pred HHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChh
Q 027827 164 GAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRD 204 (218)
Q Consensus 164 ~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 204 (218)
..... +... ...+|++.+|++++.++|++++++.+.+
T Consensus 82 ~~~~~--~~~~--~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 118 (123)
T cd03181 82 FTYVF--DKEW--RAKYPNVTRWFNTVVNQPIFKAVFGEVK 118 (123)
T ss_pred HHHHc--CHHH--HHhChHHHHHHHHHHcCHHHHHHcCCCC
Confidence 32211 1112 2478999999999999999999887654
No 81
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.53 E-value=2.6e-14 Score=96.28 Aligned_cols=98 Identities=13% Similarity=0.094 Sum_probs=72.6
Q ss_pred HHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHHHHhhhhcCCC
Q 027827 97 AQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAIQEALEVKLFT 176 (218)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~ 176 (218)
+.+..+.+.+.+...+....+...+.....+.+.++.+|++|++++|++|+++|+||+++++.+.+.... + .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~----~--~-- 76 (103)
T cd03207 5 LFFYAGVVEPALIAKAMGIEEPARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQF----G--L-- 76 (103)
T ss_pred eeeccccccHHHHHHHcCCCcchhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHc----C--C--
Confidence 3334444444433333322223356667889999999999999889999999999999999998887421 2 2
Q ss_pred CCCCcHHHHHHHHHhhcchhhccCCC
Q 027827 177 EDRFPKLYRWSEEFVNCSIIKESLPP 202 (218)
Q Consensus 177 ~~~~p~l~~w~~~~~~~p~~~~~~~~ 202 (218)
...+|+|++|+++++++|+++++...
T Consensus 77 ~~~~p~l~~w~~~~~~~p~~~~~~~~ 102 (103)
T cd03207 77 LPERPAFDAYIARITDRPAFQRAAAI 102 (103)
T ss_pred CCCChHHHHHHHHHHcCHHHHHHhcc
Confidence 24899999999999999999987653
No 82
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.53 E-value=1.7e-13 Score=97.06 Aligned_cols=111 Identities=20% Similarity=0.241 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhcCcchH--H-HHHHHHHHHHHHHHHHHHhc--CCCeecCCCCChhHHHHHHHHHHH
Q 027827 89 ERANARFWAQFIDEKCRVALRNAYGCQEKE--R-EEEATREACELLKTLENELK--NRRFFGGDKIGLVDIVANFIGFWL 163 (218)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~le~~L~--~~~fl~G~~~t~aD~~l~~~l~~~ 163 (218)
+++.++++++.+.+.+.......+....+. . ..-..+.+.+.|+.||++|+ +++|++|+++|+||+++++.+.++
T Consensus 3 e~a~iD~i~~~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~ 82 (137)
T cd03208 3 ERALIDMYVEGTADLMEMILMLPFLPPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMV 82 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHH
Confidence 567888888888776655544444332221 0 12223456799999999998 678999999999999999998887
Q ss_pred HHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCCChhh
Q 027827 164 GAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLPPRDK 205 (218)
Q Consensus 164 ~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~ 205 (218)
... .... ...+|+|.+|++++.++|++++++.+...
T Consensus 83 ~~~----~~~~--l~~~P~l~~~~~rv~~~P~vk~~~~~~~~ 118 (137)
T cd03208 83 EEL----DPSL--LSDFPLLQAFKTRISNLPTIKKFLQPGSP 118 (137)
T ss_pred HHh----chhh--hccChHHHHHHHHHHcCHHHHHHHhcCCC
Confidence 432 2222 24899999999999999999998886553
No 83
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.50 E-value=2e-13 Score=90.56 Aligned_cols=95 Identities=17% Similarity=0.275 Sum_probs=74.1
Q ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCC
Q 027827 70 LEYIDDTWKGHPILPENPHERANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELKNRRFFGGDKI 149 (218)
Q Consensus 70 ~~yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~ 149 (218)
++||.+.. .++|.++.+.+.+++|++.....+. .....++...++.+|++|++++|++|+++
T Consensus 1 ~r~~~~~~---~~~~~~~~~~~~vd~~~d~~~~~l~---------------~~~~~~~~~~l~~le~~L~~~~fl~Gd~~ 62 (96)
T cd03200 1 ARFLYRLL---GPAPNAPNAATNIDSWVDTAIFQLA---------------EGSSKEKAAVLRALNSALGRSPWLVGSEF 62 (96)
T ss_pred CchHHHHh---cccCCCchHHHHHHHHHHHHHHHHh---------------cCCHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 36888873 3899999999999999997653332 11233556788899999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhh
Q 027827 150 GLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVN 192 (218)
Q Consensus 150 t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 192 (218)
|+|||++++.+.+. + .....+|+|.+|++++.+
T Consensus 63 tiADi~l~~~l~~~-------~---~~~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 63 TVADIVSWCALLQT-------G---LASAAPANVQRWLKSCEN 95 (96)
T ss_pred CHHHHHHHHHHHHc-------c---cccccChHHHHHHHHHHh
Confidence 99999999887543 1 113479999999999976
No 84
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.49 E-value=2.6e-13 Score=94.78 Aligned_cols=105 Identities=23% Similarity=0.304 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHH---------hhc--CcchHHHHHHHHHHHHHHHHHHHHh-cCCCeecCCCCChhHHHHH
Q 027827 90 RANARFWAQFIDEKCRVALRN---------AYG--CQEKEREEEATREACELLKTLENEL-KNRRFFGGDKIGLVDIVAN 157 (218)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~~~~~~~~~~~l~~le~~L-~~~~fl~G~~~t~aD~~l~ 157 (218)
++++++|+.+..+.+.+.+.. .+. ...+...+...+.+.+.++.+|++| ++++|++|+++|+||++++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~ 81 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAV 81 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH
Confidence 456777777776655543322 111 1123335667888999999999984 5578999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhh--cchhhccC
Q 027827 158 FIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVN--CSIIKESL 200 (218)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~--~p~~~~~~ 200 (218)
+.+.+.... +.+. ...+|+|.+|++++.+ ||+++++.
T Consensus 82 ~~~~~~~~~----~~~~--~~~~p~l~~w~~~~~~~~~p~~~~~~ 120 (126)
T cd03183 82 CEIMQPEAA----GYDV--FEGRPKLAAWRKRVKEAGNPLFDEAH 120 (126)
T ss_pred HHHHHHHhc----CCcc--cccCchHHHHHHHHHHhcchhHHHHH
Confidence 987666321 3222 2589999999999999 99998854
No 85
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.46 E-value=4.4e-13 Score=88.83 Aligned_cols=73 Identities=30% Similarity=0.489 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcc
Q 027827 117 KEREEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCS 194 (218)
Q Consensus 117 ~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p 194 (218)
+...+.....+.+.|+.+|+.|++++|++|+++|+||+++++.+.++... +.... .+++|+|.+|++++.+||
T Consensus 23 ~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~----~~~~~-~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 23 EEMVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERL----GPDFL-FEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHH----TTTTT-HTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHh----CCCcc-cccCHHHHHHHHHHHcCC
Confidence 33467778999999999999999999999999999999999999988554 33332 269999999999999997
No 86
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.44 E-value=6.7e-13 Score=88.90 Aligned_cols=70 Identities=21% Similarity=0.314 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchh
Q 027827 120 EEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSII 196 (218)
Q Consensus 120 ~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (218)
.+....++.+.++.+|+.|++++|++|+++|+||+++++++.+... ..+...++|+|.+|+++++++|++
T Consensus 31 ~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~-------~~~~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 31 KETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALAPE-------GGVDLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHHhc-------cCCChhhCcHHHHHHHHHHhCcCC
Confidence 5667889999999999999999999999999999999998765421 112235899999999999999975
No 87
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.41 E-value=1.1e-12 Score=81.86 Aligned_cols=60 Identities=13% Similarity=0.157 Sum_probs=50.1
Q ss_pred cCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhc
Q 027827 10 WGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDT 76 (218)
Q Consensus 10 ~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~ 76 (218)
+.+++|.|++++|++.|+||+.+... . . ...+|. |+||+|++||.+|+||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~--~--~--~~~~P~-GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRA--N--A--EFMSPS-GKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecC--C--c--cccCCC-CcccEEEECCEEEeCHHHHHHHHhcC
Confidence 45789999999999999999988431 1 1 126787 89999999999999999999999864
No 88
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.40 E-value=1.1e-12 Score=81.66 Aligned_cols=67 Identities=27% Similarity=0.403 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHH
Q 027827 119 REEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEE 189 (218)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 189 (218)
..+++.+.+.+.|+.||++|++++|++|++||+||+++++.+.++..... +..+ ...+|+|.+|++|
T Consensus 3 ~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~--~~~~--~~~~p~l~~w~~r 69 (69)
T PF13410_consen 3 AVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGP--DFDL--LEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTH--TCCH--HTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCc--CcCc--cccCHHHHHHHhC
Confidence 36788999999999999999999999999999999999999998865422 1122 3699999999986
No 89
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.40 E-value=3.1e-12 Score=87.72 Aligned_cols=104 Identities=14% Similarity=0.074 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHh-----hcC-cchHHHHHHHHHHHHHHHHHHHHhc-CCCeecCCCCChhHHHHHHHH
Q 027827 88 HERANARFWAQFIDEKCRVALRNA-----YGC-QEKEREEEATREACELLKTLENELK-NRRFFGGDKIGLVDIVANFIG 160 (218)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~l~~le~~L~-~~~fl~G~~~t~aD~~l~~~l 160 (218)
.+++++++|+.++.+.+.+..... +.. ..+...+.....+.+.+..+|..|+ +++|++| ++|+||+++++++
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~~ 80 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALML 80 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHHH
Confidence 478999999999999988753211 221 1112245677888999999999995 5589999 5999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccCC
Q 027827 161 FWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESLP 201 (218)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 201 (218)
.|.... +.++ . |++.+|++|+.+||++++.++
T Consensus 81 ~~~~~~----g~~l----~-p~l~ay~~r~~~rPa~~~~~~ 112 (114)
T cd03195 81 NRLVLN----GDPV----P-ERLRDYARRQWQRPSVQAWLA 112 (114)
T ss_pred HHHHHc----CCCC----C-HHHHHHHHHHHCCHHHHHHHh
Confidence 888543 3322 2 999999999999999998764
No 90
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.39 E-value=6.5e-12 Score=85.02 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=64.0
Q ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHhcCC----------CeecCCCCChhHHHHHHHHHHHHHHHHhhhhcCC--CCCC
Q 027827 112 YGCQEKEREEEATREACELLKTLENELKNR----------RFFGGDKIGLVDIVANFIGFWLGAIQEALEVKLF--TEDR 179 (218)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~le~~L~~~----------~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~--~~~~ 179 (218)
..+++....++....+.+.|+.+|++|+++ +|++|+++|+|||++++.+.++... +.... ....
T Consensus 19 ~~~~~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~----~~~~~~~~~~~ 94 (111)
T cd03204 19 LDHDNVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFL----GLSRRYWGNGK 94 (111)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHc----Ccccccccccc
Confidence 344455557888999999999999999754 4999999999999999999887532 21110 0247
Q ss_pred CcHHHHHHHHHhhcchh
Q 027827 180 FPKLYRWSEEFVNCSII 196 (218)
Q Consensus 180 ~p~l~~w~~~~~~~p~~ 196 (218)
+|+|.+|++++.+||+|
T Consensus 95 ~P~l~~w~~rv~aRpsf 111 (111)
T cd03204 95 RPNLEAYFERVLQRESF 111 (111)
T ss_pred ChHHHHHHHHHHcCCCC
Confidence 99999999999999986
No 91
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2e-11 Score=88.80 Aligned_cols=171 Identities=11% Similarity=0.136 Sum_probs=125.2
Q ss_pred ChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcCCCCCCC-CCCHHHH
Q 027827 12 SFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTWKGHPIL-PENPHER 90 (218)
Q Consensus 12 sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~~~~~l~-p~~~~~~ 90 (218)
..-|..|..+|...++||.++..+-. --++|. |+||.|..|...+.|-..|+.+.+++.- .|- ..+..++
T Consensus 34 ~ascLAVqtfLrMcnLPf~v~~~~Na------efmSP~-G~vPllr~g~~~~aef~pIV~fVeak~~--~l~s~lsE~qk 104 (257)
T KOG3027|consen 34 NASCLAVQTFLRMCNLPFNVRQRANA------EFMSPG-GKVPLLRIGKTLFAEFEPIVDFVEAKGV--TLTSWLSEDQK 104 (257)
T ss_pred chhHHHHHHHHHHcCCCceeeecCCc------cccCCC-CCCceeeecchhhhhhhHHHHHHHHhcc--chhhhhhhHHH
Confidence 34688999999999999999865422 126887 8999999999999999999999998852 232 1245588
Q ss_pred HHHHHHHHHhhhhhhHHHHH---------------------------h--hc------------CcchHHHHHHHHHHHH
Q 027827 91 ANARFWAQFIDEKCRVALRN---------------------------A--YG------------CQEKEREEEATREACE 129 (218)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~---------------------------~--~~------------~~~~~~~~~~~~~~~~ 129 (218)
+.++..++.++..+...-.. + |. ..+....++..+++..
T Consensus 105 admra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vdk 184 (257)
T KOG3027|consen 105 ADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVDK 184 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHH
Confidence 89999998887765432111 0 00 1122225667888999
Q ss_pred HHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHH--HHhhhhcCCCCCCCcHHHHHHHHHhhc
Q 027827 130 LLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAI--QEALEVKLFTEDRFPKLYRWSEEFVNC 193 (218)
Q Consensus 130 ~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~--~~~~~~~~~~~~~~p~l~~w~~~~~~~ 193 (218)
+++.|+.+|+.++|+.|++||-+|..+|+.+..+... ....-... .++|++|-++++|+++.
T Consensus 185 c~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~--lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 185 CCRALSAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANI--LKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHH--HHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987666322 00100111 35899999999999863
No 92
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.37 E-value=2.7e-12 Score=86.58 Aligned_cols=96 Identities=21% Similarity=0.261 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhh--------cCcchHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHH
Q 027827 89 ERANARFWAQFIDEKCRVALRNAY--------GCQEKEREEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIG 160 (218)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l 160 (218)
+++++++|+.+..+.+.+.+.... ....++..+....++.+.++.+|+.|++++|++|+++|+||+++++.+
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~ 81 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYT 81 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHH
Confidence 578899999988777766654321 122234467788999999999999998889999999999999999998
Q ss_pred HHHHHHHHhhhhcCCCCCCCcHHHHHHHHHh
Q 027827 161 FWLGAIQEALEVKLFTEDRFPKLYRWSEEFV 191 (218)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~ 191 (218)
.++... + ++...+|+|.+|+++++
T Consensus 82 ~~~~~~----~---~~~~~~p~l~~~~~~~~ 105 (105)
T cd03179 82 HVADEG----G---FDLADYPAIRAWLARIE 105 (105)
T ss_pred Hhcccc----C---CChHhCccHHHHHHhhC
Confidence 887421 2 22347999999999874
No 93
>PRK10638 glutaredoxin 3; Provisional
Probab=99.34 E-value=5.3e-12 Score=81.53 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=64.0
Q ss_pred CcceEEecccCChhHHHHHHHHHHcCCCceeeecCCCC-CchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHH
Q 027827 1 MTEVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSN-KSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYI 73 (218)
Q Consensus 1 m~~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL 73 (218)
|+++++|+.+.||||++++.+|..+||+|+.+.++... ..+++.+.++. +++|++..+|..|.+...+..+-
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i~~~g~~igG~~~~~~~~ 73 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR-TTVPQIFIDAQHIGGCDDLYALD 73 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHHHH
Confidence 88999999999999999999999999999999997653 45678889998 89999999999999987777654
No 94
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.32 E-value=1.9e-11 Score=82.29 Aligned_cols=97 Identities=24% Similarity=0.254 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhcCc----chHHHHHHHHHHHHHHHHHHHHhcC--CCeecCCCCChhHHHHHHHHHH
Q 027827 89 ERANARFWAQFIDEKCRVALRNAYGCQ----EKEREEEATREACELLKTLENELKN--RRFFGGDKIGLVDIVANFIGFW 162 (218)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~le~~L~~--~~fl~G~~~t~aD~~l~~~l~~ 162 (218)
++++++.+++...+.........+..+ .+...+...+.+.+.++.+|++|++ ++|++|+++|+||+++++.+.+
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~~ 81 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLDY 81 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHHH
Confidence 467788888887666555555555433 2444666788899999999999987 8999999999999999999888
Q ss_pred HHHHHHhhhhcCCCCCCCcHHHHHHHHH
Q 027827 163 LGAIQEALEVKLFTEDRFPKLYRWSEEF 190 (218)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 190 (218)
+... +... ....+|+|.+|++++
T Consensus 82 ~~~~----~~~~-~~~~~p~l~~~~~~~ 104 (104)
T cd03192 82 LLYL----DPKL-LLKKYPKLKALRERV 104 (104)
T ss_pred HHhh----Cchh-hHHhChhHHHHHHhC
Confidence 7543 2211 034799999999875
No 95
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.32 E-value=9.3e-12 Score=79.57 Aligned_cols=71 Identities=24% Similarity=0.290 Sum_probs=63.0
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHH
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYID 74 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~ 74 (218)
+++||+.++||+|.+++.+|+.+||+|+.+.++-.....++...++. .++|++..||..|.++..|.+||.
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~-~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGA-TTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCC-CCcCeEEECCEEEcCHHHHHHHhC
Confidence 58999999999999999999999999999988765445566667776 799999999999999999999984
No 96
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=3.1e-10 Score=87.91 Aligned_cols=170 Identities=21% Similarity=0.245 Sum_probs=121.6
Q ss_pred ChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEE-eCCeEeeecHHHHHHHHhcCCCCCCCCC-CHHH
Q 027827 12 SFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV-HKGNPIAESRVILEYIDDTWKGHPILPE-NPHE 89 (218)
Q Consensus 12 sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~-~~g~~i~eS~~I~~yL~~~~~~~~l~p~-~~~~ 89 (218)
++-|..+.+++.+.+-|.++...+-. | .+|. |++|+|+ ++|..+..-..|+.+|.....+-.+=+. ...+
T Consensus 17 d~~sL~~l~y~kl~~~~l~v~~ssN~----~---~s~s-g~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~kq 88 (313)
T KOG3028|consen 17 DPDSLAALIYLKLAGAPLKVVVSSNP----W---RSPS-GKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAKQ 88 (313)
T ss_pred ChhHHHHHHHHHHhCCCceeEeecCC----C---CCCC-CCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHHH
Confidence 68999999999999977776655432 2 4666 8999999 5789999999999999984222112122 2556
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhc------------------------------------------CcchHHHHHHHHHH
Q 027827 90 RANARFWAQFIDEKCRVALRNAYG------------------------------------------CQEKEREEEATREA 127 (218)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~ 127 (218)
.++...|+.+++..+.+++...+. +...+...+.....
T Consensus 89 ~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~A 168 (313)
T KOG3028|consen 89 LADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKDA 168 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 788888888888887776654111 11111234456667
Q ss_pred HHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHHHHh---hhhcCCCCCCCcHHHHHHHHHhh
Q 027827 128 CELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAIQEA---LEVKLFTEDRFPKLYRWSEEFVN 192 (218)
Q Consensus 128 ~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~---~~~~~~~~~~~p~l~~w~~~~~~ 192 (218)
.+++..|.+.|++++|++|++||..|+.++..+..+-....- .... ...++||.++++++..
T Consensus 169 ska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~---l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 169 SKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVH---LLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHH---HHhcchHHHHHHHHHH
Confidence 889999999999999999999999999999988774221000 0011 1248999999999886
No 97
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.27 E-value=1.3e-11 Score=82.48 Aligned_cols=65 Identities=32% Similarity=0.403 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC--eecCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhh
Q 027827 120 EEEATREACELLKTLENELKNRR--FFGGDKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVN 192 (218)
Q Consensus 120 ~~~~~~~~~~~l~~le~~L~~~~--fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 192 (218)
.+...+.+.+.|+.++++|+++. |++|++||+||+++++.|..+.. . . + .+.+|+|.+|++||++
T Consensus 33 ~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~-----~-~-~-~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 33 GDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRW-----A-D-F-PKDYPNLVRWYERIEE 99 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHC-----C-H-H-TTTCHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhh-----c-c-c-ccccHHHHHHHHhhcC
Confidence 56778899999999999998766 99999999999999998865532 1 1 1 1589999999999975
No 98
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.24 E-value=4.6e-11 Score=79.43 Aligned_cols=93 Identities=28% Similarity=0.438 Sum_probs=67.2
Q ss_pred HHHHHHhhhhhhHHHHHhhcC------cchHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHHH
Q 027827 94 RFWAQFIDEKCRVALRNAYGC------QEKEREEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAIQ 167 (218)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~ 167 (218)
++|+.+..+.+.+.....+.. ..+...+...+.+.+.++.||++|++++|+.|+++|+||+++++.+.++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~ 81 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLG 81 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhh
Confidence 455666665554444433222 12333677788999999999999999999999999999999999999886542
Q ss_pred HhhhhcCCCCCCCcHHHHHHHHH
Q 027827 168 EALEVKLFTEDRFPKLYRWSEEF 190 (218)
Q Consensus 168 ~~~~~~~~~~~~~p~l~~w~~~~ 190 (218)
...+ . .+.+|++.+|++++
T Consensus 82 ~~~~--~--~~~~p~l~~~~~~~ 100 (100)
T cd00299 82 PLLG--L--LDEYPRLAAWYDRL 100 (100)
T ss_pred hhhh--h--hccCccHHHHHHhC
Confidence 2111 1 34799999999875
No 99
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.23 E-value=7.9e-11 Score=80.71 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHh---cCCCeecCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhh
Q 027827 121 EEATREACELLKTLENEL---KNRRFFGGDKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIK 197 (218)
Q Consensus 121 ~~~~~~~~~~l~~le~~L---~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 197 (218)
+...+.+.+.++.+|..| ++++|++|+ +|+||+++++++.+.... + ++ ..|+|.+|++++.++|+++
T Consensus 40 ~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~----~---~~--~~P~l~~~~~rv~~rPsv~ 109 (114)
T cd03194 40 EAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTY----G---LP--LSPAAQAYVDALLAHPAMQ 109 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHc----C---CC--CCHHHHHHHHHHHCCHHHH
Confidence 344555566666666655 467899999 999999999988887421 2 21 2399999999999999999
Q ss_pred ccCC
Q 027827 198 ESLP 201 (218)
Q Consensus 198 ~~~~ 201 (218)
+.+.
T Consensus 110 ~~~~ 113 (114)
T cd03194 110 EWIA 113 (114)
T ss_pred HHHh
Confidence 8653
No 100
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.21 E-value=9.4e-11 Score=73.54 Aligned_cols=71 Identities=27% Similarity=0.301 Sum_probs=61.1
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHH
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYID 74 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~ 74 (218)
+++||+.++||+|.+++-+|..+|++|+.+.++.......+...+.. .++|++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~-~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGA-MTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCC-CCcCeEEECCEEEeCHHHHHHHhC
Confidence 58999999999999999999999999999988755433445555665 689999999999999999999974
No 101
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.19 E-value=1.1e-10 Score=73.23 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=50.6
Q ss_pred cCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhc
Q 027827 10 WGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDT 76 (218)
Q Consensus 10 ~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~ 76 (218)
..||+|.++.++|...|+||+++.... ...+|. |++|+|+++|..|.||..|++||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n-------~~~sp~-gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNN-------PWRSPT-GKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCC-------CCCCCC-CccCEEEECCEEecChHHHHHHHHHc
Confidence 347999999999999999999875432 125687 89999999999999999999999864
No 102
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.19 E-value=6.2e-11 Score=77.39 Aligned_cols=70 Identities=21% Similarity=0.161 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHHHHhhhhcC--CCCCCCcHHHHHHHHHh
Q 027827 120 EEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAIQEALEVKL--FTEDRFPKLYRWSEEFV 191 (218)
Q Consensus 120 ~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~--~~~~~~p~l~~w~~~~~ 191 (218)
.....+++.+.++.+|++|++++|++|+++|+||+++++.+.++.... . +... .....+|+|.+|++++.
T Consensus 17 ~~~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~-~-~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 17 TREIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAP-L-PNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcC-C-CChHHHHHHHhCcHHHHHHHHhC
Confidence 446678899999999999999999999999999999999888774310 0 0000 01247999999999974
No 103
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.18 E-value=1.3e-10 Score=80.82 Aligned_cols=68 Identities=22% Similarity=0.300 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhh
Q 027827 120 EEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVN 192 (218)
Q Consensus 120 ~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 192 (218)
.+...+.+.+.|+.+|++|++++|+.|+++|+||+++++.+.+.... .+... .+++|+|.+|++||.+
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~---~~~~~--~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARIV---SPFPL--LEEDDPVYDWFERCLD 123 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHHc---Ccccc--cccCChHHHHHHHHhc
Confidence 45677889999999999999999999999999999999998887532 12222 3489999999999976
No 104
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.06 E-value=1.6e-09 Score=72.08 Aligned_cols=65 Identities=23% Similarity=0.293 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHH
Q 027827 119 REEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEF 190 (218)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 190 (218)
..+.....+.+.|..+|++|++++| +++|+||+++++.+.|..... .+... ..++|+|.+|+++|
T Consensus 34 ~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~--~~~~~--~~~~p~l~~w~~rm 98 (98)
T cd03205 34 WLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRH--PDLDW--RAAHPALAAWYARF 98 (98)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHc--cCcch--hhhChHHHHHHHhC
Confidence 4677789999999999999998888 899999999999998884321 12111 35899999999985
No 105
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.00 E-value=1.7e-09 Score=68.00 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=57.7
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCC-CCchhhhhhCCCCCcccEEEeCCeEeeecHHHHH
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS-NKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILE 71 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~ 71 (218)
+++||+.+.||+|++++.+|+.+||+|+.+.++.. ...+++.+.++. +++|++..||..|.+-....+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS-SVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHh
Confidence 58999999999999999999999999999988754 235678888998 799999999998877655443
No 106
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.96 E-value=2.7e-09 Score=68.27 Aligned_cols=61 Identities=15% Similarity=0.312 Sum_probs=49.2
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEee
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIA 64 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~ 64 (218)
+++||+.++||+|.+++-+|..+||+|+.+.++-.....+....++. .+||+++.++..+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGF-RQLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-CCcCEEEECCEEEe
Confidence 58999999999999999999999999999988754322233345676 79999998876553
No 107
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.96 E-value=2.6e-09 Score=74.39 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHH-H--HhhhhcCCCCCCCcHHHHHHHHHh
Q 027827 119 REEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAI-Q--EALEVKLFTEDRFPKLYRWSEEFV 191 (218)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~-~--~~~~~~~~~~~~~p~l~~w~~~~~ 191 (218)
..++..+...+.|+.|++.|++++|++|++||.+|+++++.+.++... . ..... . ..++|||.+|++||.
T Consensus 54 ~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~-~--~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 54 TLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAE-K--VKKYSNLLAFCRRIE 126 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHH-H--HHhCcHHHHHHHhcC
Confidence 367788889999999999999999999999999999999998777432 0 01111 1 348999999999974
No 108
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.92 E-value=6e-09 Score=64.79 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=59.6
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCC-CchhhhhhCCCCCcccEEEeCCeEeeecHHHHHH
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSN-KSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEY 72 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~y 72 (218)
++++|+.+.||+|++++.+|..++++|+.+.++... ...++...++. .++|++..||..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~-~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGW-PTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEecHHHHHHh
Confidence 478999999999999999999999999988886543 34667778887 7999999999999999888764
No 109
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.90 E-value=6.3e-09 Score=65.11 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=55.6
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCC-CchhhhhhCCCCCcccEEEeCCeEe--eecHHHHHHH
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSN-KSPLLLQYNSIHKKVPVLVHKGNPI--AESRVILEYI 73 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~i--~eS~~I~~yL 73 (218)
+++||+.++||+|++++.+|...|++|..+.++-.. ..+++.+.++. ..+|+++.+|..+ .++..|-++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~-~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQ-RGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCC-CcccEEEECCEEEeeCCHHHHHHHh
Confidence 489999999999999999999999999988776442 23456777887 7999999888776 5555555554
No 110
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.88 E-value=1e-08 Score=72.43 Aligned_cols=72 Identities=24% Similarity=0.223 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHHHH-hhhhcCCCCCCCcHHHHHHHHHhh
Q 027827 120 EEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAIQE-ALEVKLFTEDRFPKLYRWSEEFVN 192 (218)
Q Consensus 120 ~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~-~~~~~~~~~~~~p~l~~w~~~~~~ 192 (218)
.++..+...+.|+.|++.|++++|++|++||.+|+.+++.+..+..... ....... ..++|+|.+|++|+.+
T Consensus 62 ~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~-~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 62 EAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNH-LKQCPNLCRFCDRILS 134 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHH-HHHCcHHHHHHHHHHH
Confidence 6677788899999999999999999999999999999998776632100 0000010 3489999999999985
No 111
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.87 E-value=1.3e-08 Score=64.22 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=56.6
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCC-CCchhhhhhCCCCC-cccEEEeCCeEeeecHHHHHHH
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS-NKSPLLLQYNSIHK-KVPVLVHKGNPIAESRVILEYI 73 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~-~vP~l~~~g~~i~eS~~I~~yL 73 (218)
+++||+.+.||+|.+++-+|+.+||+|+.+.++.. ....++...... . ++|++..+|..+.+...+.++-
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~-~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGG-RRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCC-CCccCEEEECCEEEeChHHHHHHH
Confidence 47999999999999999999999999999988754 122334444443 4 8999999999999998888764
No 112
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.87 E-value=1.9e-08 Score=71.09 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=69.6
Q ss_pred EeeecHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhc-C
Q 027827 62 PIAESRVILEYIDDTWKGHPILPENPHERANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELK-N 140 (218)
Q Consensus 62 ~i~eS~~I~~yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~-~ 140 (218)
+..||..--+|+..... ++ ..+ +..+.+.....+..+...... +.......++.+...++.+-+.++ +
T Consensus 30 t~~ea~~~f~yi~~~~~----f~--~~e----r~~~~~~Ga~aM~~isk~lkk-~~~i~~D~r~~L~~a~~~w~~~~~~~ 98 (149)
T cd03197 30 TWSEALASFDYITPSGY----FG--YWE----KFFAKYVGAAAMYLISKYLKK-PRLLQDDVREWLYDALNTWVAALGKD 98 (149)
T ss_pred CHHHHHHhhhhHhcCCC----cc--HHH----HHHHHHhhHHHHHHHHHHhcc-ccCCCchHHHHHHHHHHHHHHHhcCC
Confidence 45677777777775432 11 112 223334444434444333221 111113345666666666666664 4
Q ss_pred CCeecCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhh
Q 027827 141 RRFFGGDKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVN 192 (218)
Q Consensus 141 ~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 192 (218)
++|+.|++||+||+++++.+..+..+. +.+ +..++|+|.+|++||.+
T Consensus 99 ~~FlaGd~ptIADisvyg~l~s~e~~~---~~~--Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 99 RQFHGGSKPNLADLAVYGVLRSVEGHP---AFK--DMVEETKIGEWYERMDA 145 (149)
T ss_pred CCccCCCCCCHHHHHHHHHHHHHHHhc---ccc--chhhCcCHHHHHHHHHH
Confidence 689999999999999999987775331 211 23489999999999986
No 113
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.86 E-value=9e-09 Score=64.25 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=52.7
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCC-CCchhhhhhCCCCCcccEEEeCCeEeee
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS-NKSPLLLQYNSIHKKVPVLVHKGNPIAE 65 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~i~e 65 (218)
++++|+.++||+|++++.+|.++|++|..+.++.. ...+++.+.+|. +++|+++++|..+.+
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i~~~~~~i~g 63 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY-RSVPVVVIGDEHLSG 63 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC-cccCEEEECCEEEec
Confidence 47999999999999999999999999999988754 234567788898 899999998876654
No 114
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=4.9e-08 Score=62.27 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=55.5
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCC--Cchhhh-hhCCCCCcccEEEeCCeEeeecHHHHHH
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSN--KSPLLL-QYNSIHKKVPVLVHKGNPIAESRVILEY 72 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~--~~~~~~-~~~p~~~~vP~l~~~g~~i~eS~~I~~y 72 (218)
++++|+.+.||||.++.-+|..+|++|+.+.++... ...++. ..++. .+||++..||..+.....+-++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCC-CCcCEEEECCEEEeCcccHHHH
Confidence 489999999999999999999999999999998775 333444 44477 7999999999887765554444
No 115
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.76 E-value=3e-08 Score=62.06 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=45.5
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCe
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGN 61 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~ 61 (218)
++||+.+.||+|++++-+|+.+||+|+.+.++-.....+.....+. .+||+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~-~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGF-RQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-cccCEEEECCC
Confidence 5899999999999999999999999999988755323333334565 68999998664
No 116
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.75 E-value=1.6e-07 Score=62.64 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHhhhhhhHHHHH-----hhcCc-chHHHHHHHHHHHHHHHHHHHHhcC-CCeecCCCCChhHHHHHH
Q 027827 86 NPHERANARFWAQFIDEKCRVALRN-----AYGCQ-EKEREEEATREACELLKTLENELKN-RRFFGGDKIGLVDIVANF 158 (218)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~-~~fl~G~~~t~aD~~l~~ 158 (218)
|..+++..+++..++.+.+++.-.. .|.+. .....+.....+.+.+...++.|.+ ++||+|+ .|+||..+++
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGe-wsIAD~dlA~ 79 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFGE-WSIADADLAL 79 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT--SSTTSS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcccc-chHHHHHHHH
Confidence 4568999999999999998776432 44432 2333456677788888889999975 6899996 9999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccC
Q 027827 159 IGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESL 200 (218)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 200 (218)
+++++... |.. ++ +++.+|.++.-+||++++.+
T Consensus 80 ml~Rl~~~----gd~-vP----~~l~~Ya~~qwqrpsVQ~Wl 112 (117)
T PF14834_consen 80 MLNRLVTY----GDP-VP----ERLADYAERQWQRPSVQRWL 112 (117)
T ss_dssp HHHHHHTT----T---------HHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHHHc----CCC-CC----HHHHHHHHHHHCCHHHHHHH
Confidence 99998532 322 22 68999999999999998754
No 117
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.74 E-value=4.2e-08 Score=62.01 Aligned_cols=70 Identities=13% Similarity=0.254 Sum_probs=53.3
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCCC-chhhhhhC-CCCCcccEEE-eCCeEeeecH--HHHHHH
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNK-SPLLLQYN-SIHKKVPVLV-HKGNPIAESR--VILEYI 73 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~-~~~~~~~~-p~~~~vP~l~-~~g~~i~eS~--~I~~yL 73 (218)
+++||+.++||+|++++.+|...|++|+.+.++-... ...+..+| +. ..+|+++ ++|..+.++. .|.++|
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~-~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGN-MTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCC-ceeCEEEECCCeEecCCCHHHHHHHh
Confidence 4789999999999999999999999999887764432 34555666 76 7999997 5777766543 344444
No 118
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.74 E-value=5.2e-08 Score=62.08 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=58.0
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCCC-CchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHH
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSN-KSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYID 74 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~ 74 (218)
+++|+.+.||+|.+++-+|+.+|++|+.+.++... ...++.+.+.. ..+|++..+|..+.+...+.++-+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~-~~vP~i~i~g~~igg~~~~~~~~~ 71 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR-RTVPQIFIGDVHVGGCDDLYALDR 71 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCC-CCcCEEEECCEEEcChHHHHHHHH
Confidence 58999999999999999999999999999887542 23455666666 689999999999988888777654
No 119
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.64 E-value=5.4e-08 Score=58.56 Aligned_cols=59 Identities=22% Similarity=0.343 Sum_probs=50.0
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCC-CCchhhhhhCCCCCcccEEEeCCeEe
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS-NKSPLLLQYNSIHKKVPVLVHKGNPI 63 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~i 63 (218)
+++|+.+.||+|.+++-+|..+|++|+.+.++.. ...+++...+.. .++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV-RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC-CccCEEEECCEEC
Confidence 5799999999999999999999999999999876 344566666565 7999999988764
No 120
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.64 E-value=1.9e-07 Score=60.42 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=60.7
Q ss_pred ceEEecccCChhHHHHHHHHHH-----cCCCceeeecCCCC-CchhhhhhCC--CCCcccEEEeCCeEeeecHHHHHHHH
Q 027827 3 EVQLFGLWGSFFSHRIEIALKL-----KGVEYEFIEEDLSN-KSPLLLQYNS--IHKKVPVLVHKGNPIAESRVILEYID 74 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~-----~gi~~~~~~v~~~~-~~~~~~~~~p--~~~~vP~l~~~g~~i~eS~~I~~yL~ 74 (218)
++++|+.++||+|.+++-+|+. .|++|+.+.++-.. ...++..... . .++|++..||..+.+...|.+++.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~-~~vP~ifi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPV-ETVPQIFVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCC-CcCCEEEECCEEEcCHHHHHHHHH
Confidence 5899999999999999999999 89999999887542 1233443322 2 379999999999999999999998
Q ss_pred hcCC
Q 027827 75 DTWK 78 (218)
Q Consensus 75 ~~~~ 78 (218)
+.++
T Consensus 81 ~~~~ 84 (85)
T PRK11200 81 ENLG 84 (85)
T ss_pred Hhcc
Confidence 7654
No 121
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.62 E-value=3.6e-07 Score=60.80 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=57.1
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCch----hhhhhCCCCCcccEEEeCCeEeeecHHHHHH
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSP----LLLQYNSIHKKVPVLVHKGNPIAESRVILEY 72 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~----~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~y 72 (218)
++++|+.++||||.+++-+|...|++|+.+.++...... .+...+.. .++|.+..+|..|.+...+...
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeEEECCEEEcCHHHHHHH
Confidence 589999999999999999999999999999998653322 34455666 6999999999999888777764
No 122
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.60 E-value=3.7e-07 Score=58.45 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=60.5
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCc----hhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHh
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKS----PLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDD 75 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~----~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~ 75 (218)
++++|+.++||+|.+++-+|...+++|+...++..+.. ..+.+.+.. .++|++..+|..+.++..|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 47899999999999999999999999999988876542 234455665 6899999999999999999988764
No 123
>PHA03050 glutaredoxin; Provisional
Probab=98.57 E-value=5.1e-07 Score=60.93 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=57.3
Q ss_pred cceEEecccCChhHHHHHHHHHHcCC---CceeeecCCCCC----chhhhhhCCCCCcccEEEeCCeEeeecHHHHH
Q 027827 2 TEVQLFGLWGSFFSHRIEIALKLKGV---EYEFIEEDLSNK----SPLLLQYNSIHKKVPVLVHKGNPIAESRVILE 71 (218)
Q Consensus 2 ~~~~L~~~~~sp~~~~~r~~l~~~gi---~~~~~~v~~~~~----~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~ 71 (218)
+++++|+.++||||.+++-+|...|+ +|+.+.++-... ..++.+.+.. .+||.+..||..|.+...+..
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEECCEEEeChHHHHH
Confidence 36899999999999999999999999 788888875322 3456677776 699999999999988877766
No 124
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.52 E-value=6.4e-07 Score=58.03 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=57.2
Q ss_pred eEEecccCChhHHHHHHHHHHcC-----CCceeeecCCCC-CchhhhhhCCC-CCcccEEEeCCeEeeecHHHHHHHHhc
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKG-----VEYEFIEEDLSN-KSPLLLQYNSI-HKKVPVLVHKGNPIAESRVILEYIDDT 76 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~g-----i~~~~~~v~~~~-~~~~~~~~~p~-~~~vP~l~~~g~~i~eS~~I~~yL~~~ 76 (218)
+++|+.++||||.+++-+|...+ ++|+.+.++-.. ...++...... ..+||++..||..+.++..|.+++.+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 58999999999999999999984 567777765332 12334433221 038999999999999999999999886
Q ss_pred CC
Q 027827 77 WK 78 (218)
Q Consensus 77 ~~ 78 (218)
++
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 64
No 125
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.39 E-value=2e-06 Score=56.96 Aligned_cols=71 Identities=23% Similarity=0.269 Sum_probs=54.9
Q ss_pred ceEEecc-----cCChhHHHHHHHHHHcCCCceeeecCCC-CCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHH
Q 027827 3 EVQLFGL-----WGSFFSHRIEIALKLKGVEYEFIEEDLS-NKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYID 74 (218)
Q Consensus 3 ~~~L~~~-----~~sp~~~~~r~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~ 74 (218)
++.+|.. +.||||.+++-+|..+||+|+.+.++-. ....++...+.. .++|.+..||..|.+...+.+...
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi~g~~iGG~ddl~~l~~ 89 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYVKGEFVGGCDIIMEMYQ 89 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeChHHHHHHHH
Confidence 4678854 7899999999999999999998877532 112344556666 699999999999988877776443
No 126
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.32 E-value=4.8e-06 Score=53.39 Aligned_cols=71 Identities=20% Similarity=0.248 Sum_probs=57.8
Q ss_pred eEEecccCChhHHHHHHHHHHcCCC--ceeeecCCCCCch----hhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHh
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVE--YEFIEEDLSNKSP----LLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDD 75 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~--~~~~~v~~~~~~~----~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~ 75 (218)
+++|+.++||+|++++-+|...+++ |+...++...... .+.+.... .++|++..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 8888887654332 24455555 5899999999999999888887653
No 127
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.28 E-value=4.9e-06 Score=54.35 Aligned_cols=70 Identities=20% Similarity=0.209 Sum_probs=55.2
Q ss_pred ceEEecc-----cCChhHHHHHHHHHHcCCCceeeecCCCC-CchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHH
Q 027827 3 EVQLFGL-----WGSFFSHRIEIALKLKGVEYEFIEEDLSN-KSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYI 73 (218)
Q Consensus 3 ~~~L~~~-----~~sp~~~~~r~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL 73 (218)
++++|.. +.||||.+++-+|...|++|+.+.++... ...++.+.+.. .++|.+..||..|.+...+.+..
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~-~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNW-PTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeCHHHHHHHH
Confidence 4677855 68999999999999999999999886442 12344556666 68999999999999888887744
No 128
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.21 E-value=1.1e-05 Score=50.23 Aligned_cols=56 Identities=20% Similarity=0.330 Sum_probs=48.3
Q ss_pred CChhHHHHHHHHHHcCCC---ceeeecCCCCCchhhhhhCCCCCcccEEEe-CCeEeeecHHHHHHHH
Q 027827 11 GSFFSHRIEIALKLKGVE---YEFIEEDLSNKSPLLLQYNSIHKKVPVLVH-KGNPIAESRVILEYID 74 (218)
Q Consensus 11 ~sp~~~~~r~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~-~g~~i~eS~~I~~yL~ 74 (218)
.+|-|..+..+|+..+.| ++++...- ++ .+|. |++|+|.+ ++..+.+-..|++||.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n----~~---~Spt-g~LP~L~~~~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN----PW---LSPT-GELPALIDSGGTWVSGFRNIVEYLR 72 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC----CC---cCCC-CCCCEEEECCCcEEECHHHHHHhhC
Confidence 579999999999999999 77776642 22 7888 89999998 9999999999999983
No 129
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=98.12 E-value=1.2e-05 Score=67.11 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=55.5
Q ss_pred CcceEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhh-h--------hCCCCCcccEEEeCCeEeeecHHHHH
Q 027827 1 MTEVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLL-Q--------YNSIHKKVPVLVHKGNPIAESRVILE 71 (218)
Q Consensus 1 m~~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~-~--------~~p~~~~vP~l~~~g~~i~eS~~I~~ 71 (218)
|.++++|+.+.||+|.++.-+|..+||+|+.+.++-.....++. . .+.. .+||++..||..|.+-..+..
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEECCEEEeCchHHHH
Confidence 78899999999999999999999999999999997332222222 1 1344 589999999998888777655
No 130
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=5.1e-06 Score=69.31 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=81.4
Q ss_pred CCeEeeecHHHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHH
Q 027827 59 KGNPIAESRVILEYIDDTWK-GHPILPENPHERANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENE 137 (218)
Q Consensus 59 ~g~~i~eS~~I~~yL~~~~~-~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~ 137 (218)
+|..+.++..++.|..+... .+.+++.+ .++.+++.|+++.... ....+...+..++..
T Consensus 44 d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~~-------------------~~~~~s~~~~~ld~~ 103 (712)
T KOG1147|consen 44 DGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSSTF-------------------SFDEISSSLSELDKF 103 (712)
T ss_pred ccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhhc-------------------chHHHHHHHHHHHhh
Confidence 45556666666666654432 23477776 6899999999987541 223567788888999
Q ss_pred hcCCCeecCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhhccC
Q 027827 138 LKNRRFFGGDKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIKESL 200 (218)
Q Consensus 138 L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 200 (218)
|.-..||+|.++|+||+++|++++.-....+... . .+.+-++.||++-.+..+..+.+.
T Consensus 104 l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk--~--~k~~~~v~Rw~~~~~~~~a~~~v~ 162 (712)
T KOG1147|consen 104 LVLRTFLVGNSLSIADFAIWGALHSNGMRQEQLK--A--KKDYQNVERWYDLPEFQEAHNKVL 162 (712)
T ss_pred hhHHHHhhccchhHHHHHHHHHHhcccchHHHHH--h--hCCchhhhhhcCcHhHHHHHHHHH
Confidence 9888999999999999999999987532222111 1 346789999999555555544444
No 131
>PRK10824 glutaredoxin-4; Provisional
Probab=97.84 E-value=0.0001 Score=50.13 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=54.7
Q ss_pred ceEEecc-----cCChhHHHHHHHHHHcCCCceeeecCCC-CCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHH
Q 027827 3 EVQLFGL-----WGSFFSHRIEIALKLKGVEYEFIEEDLS-NKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYI 73 (218)
Q Consensus 3 ~~~L~~~-----~~sp~~~~~r~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL 73 (218)
++.+|.- +.||||.++.-+|...|++|....++-. .-...+...+.. .+||-+-.||..|.++..+....
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~-~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANW-PTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHHH
Confidence 4667765 4899999999999999999998877543 123345566666 79999999999999987777743
No 132
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.82 E-value=0.00011 Score=52.21 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=55.0
Q ss_pred ceEEeccc------CChhHHHHHHHHHHcCCCceeeecCCCC-CchhhhhhCC----CCCcccEEEeCCeEeeecHHHHH
Q 027827 3 EVQLFGLW------GSFFSHRIEIALKLKGVEYEFIEEDLSN-KSPLLLQYNS----IHKKVPVLVHKGNPIAESRVILE 71 (218)
Q Consensus 3 ~~~L~~~~------~sp~~~~~r~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p----~~~~vP~l~~~g~~i~eS~~I~~ 71 (218)
+++||+.+ .+|+|++++-+|+.++|+|+++.++... ..+++.+... . .++|.+..+|..|.+...+.+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~-~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKA-VSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 36899998 8999999999999999999999997652 2344444422 2 589999999999988877777
Q ss_pred H
Q 027827 72 Y 72 (218)
Q Consensus 72 y 72 (218)
.
T Consensus 80 L 80 (147)
T cd03031 80 L 80 (147)
T ss_pred H
Confidence 4
No 133
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00015 Score=44.33 Aligned_cols=64 Identities=23% Similarity=0.264 Sum_probs=49.3
Q ss_pred CcceEEecccCChhHHHHHHHHHHcCCCceeeecCCC-----------CCchhhhhhCCC-CCcccEEE-eCCeEee
Q 027827 1 MTEVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS-----------NKSPLLLQYNSI-HKKVPVLV-HKGNPIA 64 (218)
Q Consensus 1 m~~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~-----------~~~~~~~~~~p~-~~~vP~l~-~~g~~i~ 64 (218)
|++.+||+...||-|-...-.|+-.+++|+.+.+.-. +..++|-..-.. |--+|+|. +||.+|.
T Consensus 1 mskp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 1 MSKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CCCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 8999999999999999999999999999999987432 445565543222 13489988 5777765
No 134
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00038 Score=46.43 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=58.1
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchh----hhhhCCCCCcccEEEeCCeEeeecHHHHHHH
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPL----LLQYNSIHKKVPVLVHKGNPIAESRVILEYI 73 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~----~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL 73 (218)
+..+|+-..||||.++.-+|...|+++.++.+|-.....+ +.++.-. .+||.+-.+|..|.....+..+=
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~-~tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ-RTVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC-CCCCEEEECCEEEcCHHHHHHHH
Confidence 4788999999999999999999999999999987744333 3445555 69999999999999988887753
No 135
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.55 E-value=0.00046 Score=48.04 Aligned_cols=68 Identities=19% Similarity=0.176 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchh
Q 027827 120 EEEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSII 196 (218)
Q Consensus 120 ~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (218)
..+..+++...|..+|..+.......| ++|+.||.+|+.|+.+... .|.. =-|++++|+++|.+...+
T Consensus 57 t~~~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Ltiv---kgi~-----~P~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 57 TPELIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLTIV---KGIQ-----WPPKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHCTC---TTS--------HHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhhhc---cCCc-----CCHHHHHHHHHHHHHcCC
Confidence 456788899999999999987666666 8999999999999887322 1322 227999999999987654
No 136
>PTZ00062 glutaredoxin; Provisional
Probab=97.42 E-value=0.00071 Score=50.93 Aligned_cols=69 Identities=25% Similarity=0.200 Sum_probs=53.1
Q ss_pred ceEEecc-----cCChhHHHHHHHHHHcCCCceeeecCCCC-CchhhhhhCCCCCcccEEEeCCeEeeecHHHHHH
Q 027827 3 EVQLFGL-----WGSFFSHRIEIALKLKGVEYEFIEEDLSN-KSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEY 72 (218)
Q Consensus 3 ~~~L~~~-----~~sp~~~~~r~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~y 72 (218)
++.||.- +.||||+++.-+|...||+|+...++-.. ....+...+.. .++|.+..||..|.+...+.+.
T Consensus 114 ~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~-~TvPqVfI~G~~IGG~d~l~~l 188 (204)
T PTZ00062 114 KILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNW-PTYPQLYVNGELIGGHDIIKEL 188 (204)
T ss_pred CEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHH
Confidence 4667744 58999999999999999999988776432 22445566666 6999999999998887666663
No 137
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.27 E-value=0.0011 Score=40.35 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=41.1
Q ss_pred ceEEecccCChhHHHHHHHHHHc-----CCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeee
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLK-----GVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAE 65 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~e 65 (218)
++++|+.++||+|.++.-+|+.. ++++....++ . .+++...... ..+|++..+|..++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~--~-~~~l~~~~~i-~~vPti~i~~~~~~~ 65 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA--E-FPDLADEYGV-MSVPAIVINGKVEFV 65 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc--c-CHhHHHHcCC-cccCEEEECCEEEEe
Confidence 47899999999999999988875 4555555443 2 2344444333 479999988876653
No 138
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.27 E-value=0.00043 Score=48.47 Aligned_cols=33 Identities=12% Similarity=-0.027 Sum_probs=31.0
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDL 36 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~ 36 (218)
+++|+.+.||+|++++-+|..+||+|+.+.+.-
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccC
Confidence 899999999999999999999999999998753
No 139
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.25 E-value=0.00039 Score=47.19 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=31.2
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS 37 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~ 37 (218)
++||+.+.||+|++++-+|+.+|++|+.+.+.-.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEE 34 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCC
Confidence 5899999999999999999999999999988544
No 140
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.22 E-value=0.002 Score=44.48 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchh
Q 027827 121 EEATREACELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSII 196 (218)
Q Consensus 121 ~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (218)
.+..+++...|..++..+....... .++|+.||.+|+.|+.+-.. .|..+ + |++++|+++|.+...+
T Consensus 59 ~~~i~~l~~~L~~l~~ll~~~~~~n-~~ls~DDi~lFp~LR~Lt~v---kgi~~-P----~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 59 PQYIAALNALLEELDPLILSSEAVN-GQLSTDDIILFPILRNLTLV---KGLVF-P----PKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcCccccC-CcCCHHHHHHHHHHhhhhhh---cCCCC-C----HHHHHHHHHHHHHhCC
Confidence 4667888999999999996545554 47999999999999888432 23322 2 7999999999987654
No 141
>PRK10026 arsenate reductase; Provisional
Probab=97.20 E-value=0.00054 Score=48.33 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=32.6
Q ss_pred CcceEEecccCChhHHHHHHHHHHcCCCceeeec
Q 027827 1 MTEVQLFGLWGSFFSHRIEIALKLKGVEYEFIEE 34 (218)
Q Consensus 1 m~~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v 34 (218)
|+++++|+++.|.-|++++-+|+.+|++|+++.+
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~ 34 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHY 34 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEee
Confidence 8889999999999999999999999999999976
No 142
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.18 E-value=0.0009 Score=45.71 Aligned_cols=33 Identities=9% Similarity=-0.026 Sum_probs=30.9
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDL 36 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~ 36 (218)
+++|+.+.|++|++++-+|+.+||+|+.+.+.-
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFK 34 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCC
Confidence 899999999999999999999999999998743
No 143
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.16 E-value=0.00058 Score=45.82 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=30.7
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDL 36 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~ 36 (218)
+++|+.+.||+|++++-+|+.+||+|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeecc
Confidence 589999999999999999999999999998853
No 144
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.00 E-value=0.0018 Score=45.35 Aligned_cols=34 Identities=6% Similarity=0.107 Sum_probs=31.5
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS 37 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~ 37 (218)
+++|+.+.|+.|++++-+|..+||+|+++.+.-.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 8999999999999999999999999999987543
No 145
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.97 E-value=0.0017 Score=45.39 Aligned_cols=35 Identities=11% Similarity=0.018 Sum_probs=31.8
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCC
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS 37 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~ 37 (218)
|+++|+.+.|+.|++++-+|..+||+|+.+.+.-.
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~ 35 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVSN 35 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCC
Confidence 38999999999999999999999999999987543
No 146
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.84 E-value=0.0017 Score=44.48 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=30.4
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDL 36 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~ 36 (218)
+++|+.+.||+|++++-+|..+||+|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGE 33 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCC
Confidence 589999999999999999999999999998753
No 147
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.64 E-value=0.011 Score=37.60 Aligned_cols=55 Identities=22% Similarity=0.377 Sum_probs=40.0
Q ss_pred ceEEecccCChhHHHHHHHHHHc--CCCceeeecCCCCCchhhhhhCCCCCcccEEEeCC
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLK--GVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKG 60 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~--gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g 60 (218)
+++||+-++|+.|..+.-.|+.. ..+++...+|....+.++.+. - -.||||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y-~--~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKY-G--YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHS-C--TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHh-c--CCCCEEEEcC
Confidence 47999999999999999999964 455667777777544444443 3 3799999877
No 148
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.60 E-value=0.0033 Score=42.77 Aligned_cols=32 Identities=19% Similarity=0.124 Sum_probs=30.2
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEED 35 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~ 35 (218)
++||+.+.|+.|++++-+|+.+|++|+++.+-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 78999999999999999999999999999764
No 149
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.58 E-value=0.017 Score=36.23 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=41.3
Q ss_pred eEEecccCChhHHHH----HHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEee
Q 027827 4 VQLFGLWGSFFSHRI----EIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIA 64 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~----r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~ 64 (218)
+.+|+ ++||.|..+ .-++++.|+++++..++ + .++..+.+- ..+|++..||..+.
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~-~~~a~~~~v--~~vPti~i~G~~~~ 61 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVT--D-MNEILEAGV--TATPGVAVDGELVI 61 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C-HHHHHHcCC--CcCCEEEECCEEEE
Confidence 67777 999999988 66888889999988887 1 333344444 47999998887664
No 150
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.55 E-value=0.0056 Score=41.06 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=30.5
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDL 36 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~ 36 (218)
+++|+.+.|+.|++++-+|..+|++|+++.+.-
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~ 33 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRK 33 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEeccc
Confidence 589999999999999999999999999997743
No 151
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.39 E-value=0.0058 Score=41.78 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=30.5
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecC
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEED 35 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~ 35 (218)
++++|+++.|.-|++++-.|+.+||+|+++.+-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 489999999999999999999999999988653
No 152
>PRK10853 putative reductase; Provisional
Probab=96.33 E-value=0.0065 Score=41.64 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=30.1
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEED 35 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~ 35 (218)
+++|+++.|.-|++++-+|+.+|++|+++.+-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 89999999999999999999999999998663
No 153
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.05 E-value=0.011 Score=41.03 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=30.6
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecC
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEED 35 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~ 35 (218)
.+++|+++.|.-|++++-+|+.+||+|+++.+-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 489999999999999999999999999999763
No 154
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.036 Score=36.25 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=50.4
Q ss_pred cccCChhHHHHHHHHHHcC-CCceeeecCCC-CCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHH
Q 027827 8 GLWGSFFSHRIEIALKLKG-VEYEFIEEDLS-NKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYID 74 (218)
Q Consensus 8 ~~~~sp~~~~~r~~l~~~g-i~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~ 74 (218)
.+|.|+|+.++--+|...| ++|..+.|=.+ +-...+++.+-. .++|-|-.+|+-|.+|..|.+..+
T Consensus 26 ~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~W-PT~PQLyi~GEfvGG~DIv~Em~q 93 (105)
T COG0278 26 EFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNW-PTFPQLYVNGEFVGGCDIVREMYQ 93 (105)
T ss_pred CCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCC-CCCceeeECCEEeccHHHHHHHHH
Confidence 4678999999999999999 67766665322 223445566666 899999999999999887777554
No 155
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.52 E-value=0.021 Score=38.76 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=29.3
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeec
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEE 34 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v 34 (218)
+++|+++.|.-|++++-+|+.+|++|+++.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di 31 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEY 31 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 5899999999999999999999999999876
No 156
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.42 E-value=0.068 Score=33.55 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=39.1
Q ss_pred ceEEecccCChhHHHHHHHHHH----cCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCe
Q 027827 3 EVQLFGLWGSFFSHRIEIALKL----KGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGN 61 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~ 61 (218)
++++|+.++||+|+.+.-.++. .+..+....++.....+ ....... ..+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~-~~~~~~v-~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ-KAMEYGI-MAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH-HHHHcCC-ccCCEEEECCE
Confidence 4689999999999988887753 35446666777654333 3333333 47999997775
No 157
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.38 E-value=0.025 Score=38.53 Aligned_cols=32 Identities=22% Similarity=0.091 Sum_probs=29.6
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEED 35 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~ 35 (218)
+++|+.+.|+-|++++-+|+.+|++|+++.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999998763
No 158
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=95.37 E-value=0.13 Score=33.49 Aligned_cols=67 Identities=10% Similarity=0.123 Sum_probs=48.7
Q ss_pred eEEecccCCh------hHHHHHHHHHHcCCCceeeecCCCC-CchhhhhhC----CCCCcccEEEeCCeEeeecHHHHH
Q 027827 4 VQLFGLWGSF------FSHRIEIALKLKGVEYEFIEEDLSN-KSPLLLQYN----SIHKKVPVLVHKGNPIAESRVILE 71 (218)
Q Consensus 4 ~~L~~~~~sp------~~~~~r~~l~~~gi~~~~~~v~~~~-~~~~~~~~~----p~~~~vP~l~~~g~~i~eS~~I~~ 71 (218)
++||....++ .|++++.+|.-+||+|+.+.++... ...+..... +. .++|-+..++..|.+...+.+
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~-~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGK-PLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCC-CCCCEEEECCEEeeCHHHHHH
Confidence 5677766653 4678899999999999999998652 233444332 33 589999999999988766555
No 159
>PHA02125 thioredoxin-like protein
Probab=95.33 E-value=0.08 Score=32.96 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=37.7
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCe
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGN 61 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~ 61 (218)
+++|+.++||.|+++.-.|+ ++.++...++... ..++.....- ..+|++. +|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~~-~~~l~~~~~v-~~~PT~~-~g~ 54 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTDE-GVELTAKHHI-RSLPTLV-NTS 54 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HHhheEEeeeCCC-CHHHHHHcCC-ceeCeEE-CCE
Confidence 78999999999999888775 4566766666544 3455544444 5899998 443
No 160
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.97 E-value=0.065 Score=30.97 Aligned_cols=54 Identities=26% Similarity=0.253 Sum_probs=36.3
Q ss_pred eEEecccCChhHHHHHHHHH-----HcCCCceeeecCCCCCchhhhhhCCCCCcccEEEe
Q 027827 4 VQLFGLWGSFFSHRIEIALK-----LKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVH 58 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~ 58 (218)
+++|+...|++|++.+..+. ..++.+..+.++............+. ..+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV-GGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC-ccccEEEE
Confidence 46778888999999999999 45566655555443322222245665 78999884
No 161
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=94.92 E-value=0.2 Score=31.25 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=37.4
Q ss_pred eEEecccCChhHHHHHH----HHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeec
Q 027827 4 VQLFGLWGSFFSHRIEI----ALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAES 66 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~----~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS 66 (218)
++++ .+.||+|.++.- ++...|+.++...+ ...++..+.+- ..+|+++.||..++..
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~~~ygv--~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEIEKYGV--MSVPALVINGKVVFVG 63 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHHHHTT---SSSSEEEETTEEEEES
T ss_pred EEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHHHHcCC--CCCCEEEECCEEEEEe
Confidence 6674 555999996665 45556777766665 22445544444 4899999998876654
No 162
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=94.76 E-value=0.081 Score=35.42 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=48.8
Q ss_pred CChhHHHHHHHHHHc---CCCceeeecCCCCCchhhhh-hCCCCCcccEEE-eCCe-------------EeeecHHHHHH
Q 027827 11 GSFFSHRIEIALKLK---GVEYEFIEEDLSNKSPLLLQ-YNSIHKKVPVLV-HKGN-------------PIAESRVILEY 72 (218)
Q Consensus 11 ~sp~~~~~r~~l~~~---gi~~~~~~v~~~~~~~~~~~-~~p~~~~vP~l~-~~g~-------------~i~eS~~I~~y 72 (218)
.||.|..+.=+|+.. .-..+++.|++......... +...+..+|+|+ .+|. -|.|+..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 588888888888764 44577778887754444433 344336799999 3443 58999999999
Q ss_pred HHhcCC
Q 027827 73 IDDTWK 78 (218)
Q Consensus 73 L~~~~~ 78 (218)
|.++|+
T Consensus 103 La~r~g 108 (112)
T PF11287_consen 103 LAERHG 108 (112)
T ss_pred HHHHcC
Confidence 999986
No 163
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.37 E-value=0.087 Score=34.12 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=39.0
Q ss_pred ceEEecccCChhHHHHHHHHHHc-----CCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEee
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLK-----GVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIA 64 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~ 64 (218)
.+.+|..++||+|..+.-++... ++.+..+.+ ....+...+.+- -.+|+++.||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~--~~~~e~a~~~~V--~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDG--ALFQDEVEERGI--MSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEh--HhCHHHHHHcCC--ccCCEEEECCEEEE
Confidence 37889999999999888777664 444544444 343334444554 37999998887654
No 164
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=92.58 E-value=0.35 Score=35.35 Aligned_cols=38 Identities=34% Similarity=0.267 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhcCC---CeecCCC-CChhHHHHHHHHHHH
Q 027827 126 EACELLKTLENELKNR---RFFGGDK-IGLVDIVANFIGFWL 163 (218)
Q Consensus 126 ~~~~~l~~le~~L~~~---~fl~G~~-~t~aD~~l~~~l~~~ 163 (218)
.-.+++..|++.|++. +|++|++ +|-+||.+++.|.-+
T Consensus 112 ~a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~ 153 (168)
T PF11801_consen 112 LAMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALL 153 (168)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHH
Confidence 4577899999999887 9999987 999999999977654
No 165
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=91.10 E-value=0.97 Score=29.88 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=38.8
Q ss_pred CcceEEecccCCh------hHHHHHHHHHHcCCCceeeecCCCC-CchhhhhhC------CCC--CcccEEEeCCeEeee
Q 027827 1 MTEVQLFGLWGSF------FSHRIEIALKLKGVEYEFIEEDLSN-KSPLLLQYN------SIH--KKVPVLVHKGNPIAE 65 (218)
Q Consensus 1 m~~~~L~~~~~sp------~~~~~r~~l~~~gi~~~~~~v~~~~-~~~~~~~~~------p~~--~~vP~l~~~g~~i~e 65 (218)
|. +++|....|+ .++++..+|+-++|+|+.+.+.... ...++.+.. |.+ ...|-|..++.-+.+
T Consensus 1 m~-I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gd 79 (99)
T PF04908_consen 1 MV-IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGD 79 (99)
T ss_dssp -S-EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEE
T ss_pred CE-EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEee
Confidence 45 7888776654 3569999999999999999887652 223344333 110 223677777776665
Q ss_pred cHHHHH
Q 027827 66 SRVILE 71 (218)
Q Consensus 66 S~~I~~ 71 (218)
=-.+-+
T Consensus 80 ye~f~e 85 (99)
T PF04908_consen 80 YEDFEE 85 (99)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 166
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=90.13 E-value=0.37 Score=32.46 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=23.0
Q ss_pred ecccCChhHHHHHHHHHHcCCCceeeecC
Q 027827 7 FGLWGSFFSHRIEIALKLKGVEYEFIEED 35 (218)
Q Consensus 7 ~~~~~sp~~~~~r~~l~~~gi~~~~~~v~ 35 (218)
|+.+.|.-|++++-+|+.+|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78999999999999999999999998764
No 167
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.74 E-value=0.91 Score=34.46 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=51.3
Q ss_pred cccCChhHHHHHHHHHHcCCCceeeecCCC-CCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHH
Q 027827 8 GLWGSFFSHRIEIALKLKGVEYEFIEEDLS-NKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYID 74 (218)
Q Consensus 8 ~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~ 74 (218)
..+.|+|++++.-+|..+|++|....|--+ .-....+..+-. .++|-|-.+|+-+.+...|.+.+.
T Consensus 150 ~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdW-PTfPQlyI~GEFiGGlDIl~~m~~ 216 (227)
T KOG0911|consen 150 EEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDW-PTFPQLYVKGEFIGGLDILKEMHE 216 (227)
T ss_pred CcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCC-CCccceeECCEeccCcHHHHHHhh
Confidence 367899999999999999999998877543 223445566776 899999999998888776666443
No 168
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=87.13 E-value=1.1 Score=30.61 Aligned_cols=28 Identities=21% Similarity=0.496 Sum_probs=13.5
Q ss_pred CcccEEEe--CCeEeeecHHHHHHHHhcCC
Q 027827 51 KKVPVLVH--KGNPIAESRVILEYIDDTWK 78 (218)
Q Consensus 51 ~~vP~l~~--~g~~i~eS~~I~~yL~~~~~ 78 (218)
..-|-|.+ +|..++|++||++|+..-|.
T Consensus 34 ~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 34 ESGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp --S--EEE-S--S----HHHHHHHHTT--T
T ss_pred cccceeeecCCceEEecccHHHHHHHhhcC
Confidence 35577864 78999999999999998764
No 169
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=84.53 E-value=8.4 Score=24.71 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=36.3
Q ss_pred eEEecccCChhHHHHHHHHHH----cCCCceeeecCCCCCchhhhhhCCCCCcccEEE--eCCeEe
Q 027827 4 VQLFGLWGSFFSHRIEIALKL----KGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGNPI 63 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~i 63 (218)
+..++.++|+.|+...-.+.. .+-++....+|.... +.+....-- ..+|++. .+|..+
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~v-~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-KELCKKYGV-KSVPTIIFFKNGKEV 84 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-HHHHHHTTC-SSSSEEEEEETTEEE
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhhcc-chhhhccCC-CCCCEEEEEECCcEE
Confidence 567788899999987744432 222566666666543 444443334 5899988 476554
No 170
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=83.54 E-value=7.1 Score=26.76 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=21.1
Q ss_pred eEEecccCChhHHHHHHHH----HHcCCCceeeecC
Q 027827 4 VQLFGLWGSFFSHRIEIAL----KLKGVEYEFIEED 35 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l----~~~gi~~~~~~v~ 35 (218)
+.-++.++||+|+++.=.| +..++++-.+.++
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd 62 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSE 62 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECC
Confidence 4567889999999754444 3445665555555
No 171
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=83.39 E-value=0.97 Score=34.45 Aligned_cols=59 Identities=17% Similarity=0.128 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCCeecCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHhhcchhh
Q 027827 128 CELLKTLENELKNRRFFGGDKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFVNCSIIK 197 (218)
Q Consensus 128 ~~~l~~le~~L~~~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 197 (218)
...++.++..|.+.+|.-|.+++-.|+.+|..+.-- .. ...+++..+|+..+.+.-...
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~e----------p~-s~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGVE----------PQ-SARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhcccC----------cc-hhhhhHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999988865221 11 346788899998888765544
No 172
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=79.05 E-value=3.3 Score=35.97 Aligned_cols=62 Identities=11% Similarity=0.020 Sum_probs=39.4
Q ss_pred eEEecccCChhHHHHHHHHHHcCCC---ceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecH
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVE---YEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESR 67 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~ 67 (218)
+++|..+.||||-.+.-++...-+. ++...++-...++...+.+- ..||.+..||..+.+..
T Consensus 121 i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v--~~VP~~~i~~~~~~~g~ 185 (515)
T TIGR03140 121 FETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGI--QGVPAVFLNGEEFHNGR 185 (515)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCC--cccCEEEECCcEEEecC
Confidence 7899999999999877777665443 23333333333333334444 48999998887766533
No 173
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=78.13 E-value=13 Score=23.95 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=34.6
Q ss_pred eEEecccCChhHHHHHHHHHH----cCCCceeeecCCCCCchhhhhhCCCCCcccEEE--eCCeEe
Q 027827 4 VQLFGLWGSFFSHRIEIALKL----KGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGNPI 63 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~i 63 (218)
+.+|+.++|+.|+...-.+.. .+-.+....++... .+++....-- ..+|++. .+|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~-~~~l~~~~~v-~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE-DQEIAEAAGI-MGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC-CHHHHHHCCC-eeccEEEEEECCeEE
Confidence 566778899999988766654 12134455555544 3344333222 4799877 467654
No 174
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=77.02 E-value=8.2 Score=25.94 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=32.0
Q ss_pred eEEe-cccCChhHHHHHHHHHHcCCC---ceeeecCCCCCchhhhhhCCCCCcccEEEe
Q 027827 4 VQLF-GLWGSFFSHRIEIALKLKGVE---YEFIEEDLSNKSPLLLQYNSIHKKVPVLVH 58 (218)
Q Consensus 4 ~~L~-~~~~sp~~~~~r~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~ 58 (218)
++++ +.++||+|+.++-+++...-. .+...++... .+++...-.- ..+|++..
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~-~~~l~~~~~v-~~vPt~~i 81 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE-DKEKAEKYGV-ERVPTTIF 81 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc-CHHHHHHcCC-CcCCEEEE
Confidence 4455 567999999887777654322 2344455443 4455544444 58999883
No 175
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=76.81 E-value=7.8 Score=25.30 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=30.7
Q ss_pred eEEecccCChhHHHHHHHH--------HHcCCCceeeecCCCCC---chhhhhhCCCCCcccEEE
Q 027827 4 VQLFGLWGSFFSHRIEIAL--------KLKGVEYEFIEEDLSNK---SPLLLQYNSIHKKVPVLV 57 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l--------~~~gi~~~~~~v~~~~~---~~~~~~~~p~~~~vP~l~ 57 (218)
+..|+.++|++|++..-.+ .+.+ .+....++.... .+.+.....- ..+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i-~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGV-FGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCC-CCCCEEE
Confidence 5677888999999876332 2232 455555665432 2344444333 5799877
No 176
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=76.63 E-value=7.1 Score=34.32 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=38.1
Q ss_pred eEEecccCChhHHHHHH----HHHHc-CCCceeeecCCCCCchhhh-hhCCCCCcccEEEeCCeEeee
Q 027827 4 VQLFGLWGSFFSHRIEI----ALKLK-GVEYEFIEEDLSNKSPLLL-QYNSIHKKVPVLVHKGNPIAE 65 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~----~l~~~-gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~l~~~g~~i~e 65 (218)
+++|..+.||||-.+.- ++.+. +|..+.+.+... ++.. +.+- ..||.++.||..+..
T Consensus 480 i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~---~~~~~~~~v--~~vP~~~i~~~~~~~ 542 (555)
T TIGR03143 480 IKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF---PDLKDEYGI--MSVPAIVVDDQQVYF 542 (555)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc---HHHHHhCCc--eecCEEEECCEEEEe
Confidence 67888889999986555 44445 677777766432 3444 4444 379999988876543
No 177
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=75.88 E-value=3.3 Score=36.03 Aligned_cols=71 Identities=18% Similarity=0.144 Sum_probs=43.1
Q ss_pred eEEecccCChhHHHHHHHHHHcCCC---ceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecH----HHHHHHHhc
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVE---YEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESR----VILEYIDDT 76 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~----~I~~yL~~~ 76 (218)
+++|..+.||||-.+.-++...-+. .+...++-.. .+++...--- ..||.+..||..+.+.. .+++.+.+.
T Consensus 120 i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~-~~~~~~~~~v-~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 120 FETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGAL-FQDEVEARNI-MAVPTVFLNGEEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchh-CHhHHHhcCC-cccCEEEECCcEEEecCCCHHHHHHHHhcc
Confidence 7899999999999877766554332 3333333333 3344433332 48999998887765532 355555543
No 178
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=75.60 E-value=16 Score=22.41 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=33.7
Q ss_pred eEEecccCChhHHHHHHHHHH-----cCCCceeeecCCCCCchhhhhhCCCCCcccEEE--eCCeE
Q 027827 4 VQLFGLWGSFFSHRIEIALKL-----KGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGNP 62 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~ 62 (218)
+..++.++|+.|+...-.+.. .++.+-.+.+ .. ...+...... ..+|++. .+|..
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~--~~-~~~~~~~~~v-~~~P~~~~~~~g~~ 75 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDV--DE-NPELAEEYGV-RSIPTFLFFKNGKE 75 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEEC--CC-ChhHHHhcCc-ccccEEEEEECCEE
Confidence 567788899999988877776 4444444333 33 2334333333 4799877 36653
No 179
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=74.98 E-value=19 Score=22.91 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=36.2
Q ss_pred eEEecccCChhHHHHHHHHHHc----CCCceeeecCCCCCchhhhhhCCCCCcccEEE--eCCeEe
Q 027827 4 VQLFGLWGSFFSHRIEIALKLK----GVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGNPI 63 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~i 63 (218)
+..++.++|+.|++..-.+... ...+....++....+.-....+. ..+|++. .+|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i--~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEI--TAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCC--ccccEEEEEECCEEE
Confidence 4567788899999886666542 33566666665543333344555 4699887 467654
No 180
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.85 E-value=8.9 Score=26.25 Aligned_cols=67 Identities=16% Similarity=0.126 Sum_probs=41.8
Q ss_pred cccCChhHHHH----HHHHHHcCCCceeeecCCCCCchhhhhhCCCCCc-------ccEEEe---CCeEeeecHHHHHHH
Q 027827 8 GLWGSFFSHRI----EIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKK-------VPVLVH---KGNPIAESRVILEYI 73 (218)
Q Consensus 8 ~~~~sp~~~~~----r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~-------vP~l~~---~g~~i~eS~~I~~yL 73 (218)
+-++||.|.++ +=+|.+..-+..++.|...+.+-|--.-||+ ++ ||+|.. .+..+.+...--..|
T Consensus 41 GqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~F-R~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~L 119 (128)
T KOG3425|consen 41 GQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPF-RKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHL 119 (128)
T ss_pred CCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCcc-ccCCCceeecceeeEEcCccccchHhHhhHHHH
Confidence 34679999854 5566767777888888777655554444444 33 787773 234456655555555
Q ss_pred Hh
Q 027827 74 DD 75 (218)
Q Consensus 74 ~~ 75 (218)
.+
T Consensus 120 ve 121 (128)
T KOG3425|consen 120 VE 121 (128)
T ss_pred HH
Confidence 44
No 181
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=69.98 E-value=16 Score=27.73 Aligned_cols=53 Identities=11% Similarity=0.044 Sum_probs=33.0
Q ss_pred eEEecccCChhHHHHHHHHHHcCC---CceeeecCCCCCchhhhhhCCCCCcccEEEe
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGV---EYEFIEEDLSNKSPLLLQYNSIHKKVPVLVH 58 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~ 58 (218)
+++|+.++||+|..+.-++....- ......+|... .++......- ..+|+++.
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~-~~~~~~~~~V-~~vPtl~i 192 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE-NPDLAEKYGV-MSVPKIVI 192 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC-CHHHHHHhCC-ccCCEEEE
Confidence 567889999999988877765421 23334455444 3344433333 47999984
No 182
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=68.59 E-value=20 Score=25.32 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=48.1
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhh----CCCCCcccEEEeCCeEee---ecHHHHHHHHh
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQY----NSIHKKVPVLVHKGNPIA---ESRVILEYIDD 75 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~----~p~~~~vP~l~~~g~~i~---eS~~I~~yL~~ 75 (218)
+|+.|..+.|+.|..=.-.++.+|..+..+..+-. ...++. ... ..-=+.+.||..|- -..+|.+.|++
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~---~alK~~~gIp~e~-~SCHT~VI~Gy~vEGHVPa~aI~~ll~~ 102 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF---LALKRRLGIPYEM-QSCHTAVINGYYVEGHVPAEAIARLLAE 102 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH---HHHHHhcCCChhh-ccccEEEEcCEEEeccCCHHHHHHHHhC
Confidence 58999999999999988888888888777755422 122211 111 23345677776653 35689999988
Q ss_pred cC
Q 027827 76 TW 77 (218)
Q Consensus 76 ~~ 77 (218)
..
T Consensus 103 ~p 104 (149)
T COG3019 103 KP 104 (149)
T ss_pred CC
Confidence 76
No 183
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=67.91 E-value=31 Score=22.92 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=32.1
Q ss_pred eEEecccCChhHHHHHHHH-----HHcCCCceeeecCCCCCchhhhhhCCCCCcccEEE--eCCeE
Q 027827 4 VQLFGLWGSFFSHRIEIAL-----KLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGNP 62 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~ 62 (218)
+..++.++|+.|+...-.+ ++.+....+..++... .+.......- ..+|++. .+|..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-~~~l~~~~~V-~~~Pt~~i~~~g~~ 91 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-ERRLARKLGA-HSVPAIVGIINGQV 91 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-cHHHHHHcCC-ccCCEEEEEECCEE
Confidence 4567778899998654333 2233344555555443 2334333333 5899887 46654
No 184
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=67.61 E-value=21 Score=23.95 Aligned_cols=60 Identities=22% Similarity=0.345 Sum_probs=36.4
Q ss_pred eEEecccCChhHHHHHHHHHHcCC---CceeeecCCCCCchhhhhhCCCCCcccEEE--eCCeEeee
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGV---EYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGNPIAE 65 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~i~e 65 (218)
+..++.++|+-|+.+.-.++...- ......+|... .+...+...- ..+|+++ .+|..+..
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~-~~~l~~~~~v-~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK-APFLVEKLNI-KVLPTVILFKNGKTVDR 90 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc-CHHHHHHCCC-ccCCEEEEEECCEEEEE
Confidence 456677889999977766644211 13555555444 3344444444 5899988 48877654
No 185
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=66.98 E-value=23 Score=23.92 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=13.3
Q ss_pred eEEecccCChhHHHHHH
Q 027827 4 VQLFGLWGSFFSHRIEI 20 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~ 20 (218)
+..++.++||+|++..-
T Consensus 18 lv~f~a~wC~~C~~~~~ 34 (125)
T cd02951 18 LLLFSQPGCPYCDKLKR 34 (125)
T ss_pred EEEEeCCCCHHHHHHHH
Confidence 56678888999998753
No 186
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=66.63 E-value=20 Score=22.03 Aligned_cols=37 Identities=14% Similarity=0.434 Sum_probs=23.0
Q ss_pred ecHHHHHHHHhcCCC--CCCCCCCHHHHHHHHHHHHHhhhh
Q 027827 65 ESRVILEYIDDTWKG--HPILPENPHERANARFWAQFIDEK 103 (218)
Q Consensus 65 eS~~I~~yL~~~~~~--~~l~p~~~~~~~~~~~~~~~~~~~ 103 (218)
|..-|+.++...||. ..+.+.+ .+..++.|.+.+.+.
T Consensus 5 E~~~ll~~I~~aYP~~~~~f~~~~--~k~~v~~W~~~L~d~ 43 (71)
T PF11417_consen 5 ETAKLLKLIKAAYPQWAGNFKPTD--SKETVDLWYDMLKDY 43 (71)
T ss_dssp HHHHHHHHHHHHST---TT---ST--HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCcchhccchhh--HHHHHHHHHHHHHhC
Confidence 556788999999983 2344444 356778888776544
No 187
>PRK09381 trxA thioredoxin; Provisional
Probab=64.71 E-value=37 Score=22.19 Aligned_cols=58 Identities=12% Similarity=0.048 Sum_probs=33.3
Q ss_pred eEEecccCChhHHHHHHHHH----HcCCCceeeecCCCCCchhhhhhCCCCCcccEEE--eCCeEe
Q 027827 4 VQLFGLWGSFFSHRIEIALK----LKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGNPI 63 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~i 63 (218)
+..++.++||.|+...-.++ ..+-.+.+..++......-....+. ..+|+++ .+|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI--RGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCC--CcCCEEEEEeCCeEE
Confidence 34566778999997754443 2222355566665543332233444 5899887 467654
No 188
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=64.63 E-value=8.3 Score=25.92 Aligned_cols=26 Identities=8% Similarity=0.268 Sum_probs=21.2
Q ss_pred ccEEE-eCCeEeeecHHHHHHHHhcCC
Q 027827 53 VPVLV-HKGNPIAESRVILEYIDDTWK 78 (218)
Q Consensus 53 vP~l~-~~g~~i~eS~~I~~yL~~~~~ 78 (218)
+|.+. .||.++++|..|+++...++.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 35444 699999999999999988763
No 189
>PHA03075 glutaredoxin-like protein; Provisional
Probab=59.52 E-value=17 Score=24.68 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=45.4
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhc
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDT 76 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~ 76 (218)
+.|+|-|.|+-|.-+.-+|....-+|+...|+.-.. . +- .|.+-+|..++.. .==..+.+||...
T Consensus 5 LILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSf----F--sK-~g~v~~lg~d~~y-~lInn~~~~lgne 69 (123)
T PHA03075 5 LILFGKPLCSVCESISEALKELEDEYDILRVNILSF----F--SK-DGQVKVLGMDKGY-TLINNFFKHLGNE 69 (123)
T ss_pred EEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeee----e--cc-CCceEEEecccce-ehHHHHHHhhccc
Confidence 789999999999999999999999999998875521 1 11 1677777754321 1124566666644
No 190
>PTZ00051 thioredoxin; Provisional
Probab=59.33 E-value=43 Score=21.22 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=32.4
Q ss_pred eEEecccCChhHHHHHHHHHHc---CCCceeeecCCCCCchhhhhhCCCCCcccEEE--eCCeEe
Q 027827 4 VQLFGLWGSFFSHRIEIALKLK---GVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGNPI 63 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~---gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~i 63 (218)
+..++.++|+.|+...-.+... ...+....++... ...+.+...- ..+|+++ .+|..+
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE-LSEVAEKENI-TSMPTFKVFKNGSVV 84 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc-hHHHHHHCCC-ceeeEEEEEeCCeEE
Confidence 4567788899999776555442 1223444444433 3334433333 5799887 366543
No 191
>PRK10996 thioredoxin 2; Provisional
Probab=57.46 E-value=63 Score=22.51 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=34.1
Q ss_pred eEEecccCChhHHHHHHHHHH----cCCCceeeecCCCCCchhhh-hhCCCCCcccEEE--eCCeEe
Q 027827 4 VQLFGLWGSFFSHRIEIALKL----KGVEYEFIEEDLSNKSPLLL-QYNSIHKKVPVLV--HKGNPI 63 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~----~gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~l~--~~g~~i 63 (218)
+..++.++|+.|+...-.+.. .+-.+.+..++.... +.+. ..+. ..+|++. .+|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~-~~l~~~~~V--~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE-RELSARFRI--RSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC-HHHHHhcCC--CccCEEEEEECCEEE
Confidence 456677889999976444433 233455556665543 3444 3444 5799887 477654
No 192
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=57.46 E-value=45 Score=22.52 Aligned_cols=60 Identities=7% Similarity=0.043 Sum_probs=31.5
Q ss_pred eEEecccCChhHHHHHHHHHH------cCCCceeeecCCCCCchhhhhhCCCCCcccEEE--e-CCeEee
Q 027827 4 VQLFGLWGSFFSHRIEIALKL------KGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--H-KGNPIA 64 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~------~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~-~g~~i~ 64 (218)
+.-++.++|+.|++..-.+.. .+..|..+.++-.. .+.-...+..++.+|+++ + +|..+.
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE-EPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC-CchhhhcccCCCccceEEEECCCCCCch
Confidence 455677889999977555444 22234444443222 111133445412499887 3 566543
No 193
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=55.50 E-value=48 Score=25.03 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=33.1
Q ss_pred eEEecc---cCChhHHHHHHHHHHcC-----CCceeeecCCCCCchhhhhhCCCCCcccEEE--eCCeE
Q 027827 4 VQLFGL---WGSFFSHRIEIALKLKG-----VEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGNP 62 (218)
Q Consensus 4 ~~L~~~---~~sp~~~~~r~~l~~~g-----i~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~ 62 (218)
+.++.. ++||.|+.+.=.++... +.+....++.+. .++.....-- ..+|++. .+|..
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~-~~~l~~~~~V-~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE-DKEEAEKYGV-ERVPTTIILEEGKD 89 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc-cHHHHHHcCC-CccCEEEEEeCCee
Confidence 566766 78999997777665542 333344444333 3444443333 4799888 36544
No 194
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=54.42 E-value=47 Score=22.03 Aligned_cols=69 Identities=10% Similarity=0.054 Sum_probs=41.8
Q ss_pred EecccCChhHHHHHHHHHHcCCCceeeecCCCC-Cchh---hhhhC---CCCCcccEEEeCCe-EeeecHHHHHHHHhc
Q 027827 6 LFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSN-KSPL---LLQYN---SIHKKVPVLVHKGN-PIAESRVILEYIDDT 76 (218)
Q Consensus 6 L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~-~~~~---~~~~~---p~~~~vP~l~~~g~-~i~eS~~I~~yL~~~ 76 (218)
|++-..||+|.+..-.+...+..-.+..++..+ ...+ ...++ .. ..+-+ ..+|. ...++.|+.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDAD-SRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHc-CeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 356678999999988888887644444444421 1111 12222 22 23333 55665 899999998876654
No 195
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=54.07 E-value=53 Score=20.64 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=31.9
Q ss_pred eEEecccCChhHHHHHHHHHH----cCCCceeeecCCCCCchhhhhhCCCCCcccEEE--eCCeE
Q 027827 4 VQLFGLWGSFFSHRIEIALKL----KGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGNP 62 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~ 62 (218)
+..++.++|+.|+...-.+.. .+-.+.+..++......-....+- ..+|++. .+|..
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGI--RSIPTLLLFKNGKE 80 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC--CcCCEEEEEeCCcE
Confidence 445667788999977544433 232355555655543322333444 4799877 46543
No 196
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=53.61 E-value=11 Score=25.78 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=27.4
Q ss_pred cccCChhHHHHHHHHH----HcCCCceeeecCCCCCchhhhhhCCC-----C--CcccEEE--eCCeEeeecH
Q 027827 8 GLWGSFFSHRIEIALK----LKGVEYEFIEEDLSNKSPLLLQYNSI-----H--KKVPVLV--HKGNPIAESR 67 (218)
Q Consensus 8 ~~~~sp~~~~~r~~l~----~~gi~~~~~~v~~~~~~~~~~~~~p~-----~--~~vP~l~--~~g~~i~eS~ 67 (218)
|.++||.|.++.-.+. ...-...++.+...+.+.|=..-||+ . ..||+|+ .++..+.|..
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e 106 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEE 106 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhh
Confidence 4567999997764443 33234555555444332221111222 0 2489998 3555565543
No 197
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=52.67 E-value=57 Score=20.91 Aligned_cols=56 Identities=11% Similarity=0.039 Sum_probs=31.2
Q ss_pred eEEecccCChhHHHHHHHHHHcCC----CceeeecCCCCCchhhhhhCCCCCcccEEE--eCCe
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGV----EYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGN 61 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~ 61 (218)
+..++.++|+.|+...-.+....- .+.+..++... .+.+....-- ..+|++. .+|.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD-DRMLCRSQGV-NSYPSLYVFPSGM 83 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc-cHHHHHHcCC-CccCEEEEEcCCC
Confidence 456777889999966554433211 24455566554 3344333232 5789887 3554
No 198
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=52.20 E-value=28 Score=24.91 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHHHcCCCceeeecCCCCCchhh
Q 027827 11 GSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLL 43 (218)
Q Consensus 11 ~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~ 43 (218)
.-+.+++++-.|++.|++|+.........++.+
T Consensus 12 D~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l 44 (150)
T PF00731_consen 12 DLPIAEEAAKTLEEFGIPYEVRVASAHRTPERL 44 (150)
T ss_dssp GHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHH
Confidence 349999999999999999999887765444443
No 199
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=50.90 E-value=90 Score=26.43 Aligned_cols=166 Identities=15% Similarity=0.066 Sum_probs=88.5
Q ss_pred ecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHH-hcC-CCCC--C
Q 027827 7 FGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYID-DTW-KGHP--I 82 (218)
Q Consensus 7 ~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~-~~~-~~~~--l 82 (218)
.-|.+||..-|+-+..+-+.+.-.+-.+ +|+-||.+|++. |-..-++-+. -++ +.++ +
T Consensus 184 IfyTGsp~VgkIim~aAaKhLTPvtLEL---------------GGKsP~~vd~~~---d~~ia~~RI~~gk~~N~GQtCv 245 (477)
T KOG2456|consen 184 IFYTGSPRVGKIIMAAAAKHLTPVTLEL---------------GGKSPCYVDKNC---DLKIAARRIAWGKWMNSGQTCV 245 (477)
T ss_pred EEecCCchHHHHHHHHHHhcCCcEEEEc---------------CCCCCeeecCCc---CHHHHHHHHHHHhhccCCCeec
Confidence 3466788899988888888765444333 389999997653 3333333332 122 1111 2
Q ss_pred CCCCH-HHHHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhcC-CCeecCCCCChhHHHHHHHH
Q 027827 83 LPENP-HERANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELKN-RRFFGGDKIGLVDIVANFIG 160 (218)
Q Consensus 83 ~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~fl~G~~~t~aD~~l~~~l 160 (218)
.|+-- -.....-.++. .+...+..+|+.+..+...-.+-.-.+.++.+...|.+ ++-..|.+-.-+|..+.|.+
T Consensus 246 apDYiL~~k~~~~kli~----alk~~l~eFYG~n~~eS~d~sRiIn~~hf~Rl~~ll~~~~kv~~Gg~~d~~d~~I~PTI 321 (477)
T KOG2456|consen 246 APDYILCSKSIQPKLID----ALKSTLKEFYGENPKESKDLSRIINQRHFQRLSALLDETGKVAIGGESDESDRYIAPTI 321 (477)
T ss_pred cCCeEEecHhhhHHHHH----HHHHHHHHHhCCCccccccHHHHhhHHHHHHHHHHhcCCCceecCCccchhhcccCCeE
Confidence 23210 01112222222 33455566677665542333333346788888889987 77777777777777766643
Q ss_pred H-HHH-----HHHHhhhhcCCCCCCCcHHHHHHHHHhhcch
Q 027827 161 F-WLG-----AIQEALEVKLFTEDRFPKLYRWSEEFVNCSI 195 (218)
Q Consensus 161 ~-~~~-----~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~ 195 (218)
- -+. .-++.+|+-+ +--..-++.+=.+-+.+++.
T Consensus 322 L~DV~~~~p~M~eEIFGPiL-PIi~v~~l~Eai~~In~~eK 361 (477)
T KOG2456|consen 322 LLDVPEDSPVMQEEIFGPIL-PIITVQSLDEAINFINEREK 361 (477)
T ss_pred EecCCCCChhhhhhhccCcc-ceeEhhhHHHHHHHHhcCCC
Confidence 2 110 0122233321 22344566666666666654
No 200
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=49.15 E-value=26 Score=25.54 Aligned_cols=36 Identities=17% Similarity=0.072 Sum_probs=26.7
Q ss_pred ceEEecccCChhHH----HHHHHHHHc-CCCceeeecCCCC
Q 027827 3 EVQLFGLWGSFFSH----RIEIALKLK-GVEYEFIEEDLSN 38 (218)
Q Consensus 3 ~~~L~~~~~sp~~~----~~r~~l~~~-gi~~~~~~v~~~~ 38 (218)
++++|+-..||||. +++-+++.. ++.++.+++.+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 36889999999998 444555556 8888888877664
No 201
>PF13728 TraF: F plasmid transfer operon protein
Probab=49.05 E-value=58 Score=24.83 Aligned_cols=52 Identities=12% Similarity=0.016 Sum_probs=33.7
Q ss_pred eEEecccCChhHH----HHHHHHHHcCCCceeeecCCC---------CCchhhhhhCCCCCcccEEE
Q 027827 4 VQLFGLWGSFFSH----RIEIALKLKGVEYEFIEEDLS---------NKSPLLLQYNSIHKKVPVLV 57 (218)
Q Consensus 4 ~~L~~~~~sp~~~----~~r~~l~~~gi~~~~~~v~~~---------~~~~~~~~~~p~~~~vP~l~ 57 (218)
+.+++...||||+ .++.+....|+++..+.+|-. ....-....+. ..+|++.
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v--~~~Pal~ 188 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV--KVTPALF 188 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC--CcCCEEE
Confidence 5667778899998 566667778888777776522 11222334455 4789776
No 202
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=47.71 E-value=78 Score=20.74 Aligned_cols=53 Identities=9% Similarity=0.106 Sum_probs=30.2
Q ss_pred eEEecccCChhHHHHHHHHHH-----cCCCceeeecCCCCCchhhh-hhCCCCCcccEEE
Q 027827 4 VQLFGLWGSFFSHRIEIALKL-----KGVEYEFIEEDLSNKSPLLL-QYNSIHKKVPVLV 57 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~-----~gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~l~ 57 (218)
+..++.++||.|++..-.+.. .+..+.+..++.......+. +.... ..+|++.
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v-~~~Pti~ 83 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL-KSFPTIL 83 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC-CcCCEEE
Confidence 567788899999976544432 33345555555443222332 22333 5799887
No 203
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=47.08 E-value=42 Score=22.20 Aligned_cols=32 Identities=16% Similarity=-0.105 Sum_probs=25.6
Q ss_pred cceEEecccCChhHHHHHHHHHHcCCCceeee
Q 027827 2 TEVQLFGLWGSFFSHRIEIALKLKGVEYEFIE 33 (218)
Q Consensus 2 ~~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~ 33 (218)
|.-.|......|...-++.+++++|||+++..
T Consensus 56 P~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 56 PWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred CCEEEECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 44566667777899999999999999988864
No 204
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.46 E-value=29 Score=21.66 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHcCCCceeeecC
Q 027827 13 FFSHRIEIALKLKGVEYEFIEED 35 (218)
Q Consensus 13 p~~~~~r~~l~~~gi~~~~~~v~ 35 (218)
+|++|+.-.++..||+|+..+-.
T Consensus 16 GF~rk~L~I~E~~~is~Eh~PSG 38 (76)
T cd04911 16 GFGRKLLSILEDNGISYEHMPSG 38 (76)
T ss_pred cHHHHHHHHHHHcCCCEeeecCC
Confidence 89999999999999999997553
No 205
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.31 E-value=37 Score=26.85 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHcCCCceeeecCCCC-Cchhhhhh----CCCCCcccEEEeCCeEeeecHHHHHH
Q 027827 14 FSHRIEIALKLKGVEYEFIEEDLSN-KSPLLLQY----NSIHKKVPVLVHKGNPIAESRVILEY 72 (218)
Q Consensus 14 ~~~~~r~~l~~~gi~~~~~~v~~~~-~~~~~~~~----~p~~~~vP~l~~~g~~i~eS~~I~~y 72 (218)
-|..||.+|+-.+|.|+++.|+++. ..+++..+ .-. ..+|.+-..|.-|.....|.+.
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~-~~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKA-VSLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhccccc-CccCeEEEccEEeccHHHhhhh
Confidence 5789999999999999999999983 23444332 122 4789777888888887777763
No 206
>PHA02278 thioredoxin-like protein
Probab=45.84 E-value=86 Score=20.65 Aligned_cols=57 Identities=9% Similarity=0.175 Sum_probs=30.7
Q ss_pred EEecccCChhHHHHHHHHHHc----CCCceeeecCCCCC---chhhhh-hCCCCCcccEEE--eCCeEe
Q 027827 5 QLFGLWGSFFSHRIEIALKLK----GVEYEFIEEDLSNK---SPLLLQ-YNSIHKKVPVLV--HKGNPI 63 (218)
Q Consensus 5 ~L~~~~~sp~~~~~r~~l~~~----gi~~~~~~v~~~~~---~~~~~~-~~p~~~~vP~l~--~~g~~i 63 (218)
.-++-++|+.|+...=.++.. +....+..++.+.. .+++.. .+. ..+|++. .+|..+
T Consensus 19 V~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I--~~iPT~i~fk~G~~v 85 (103)
T PHA02278 19 VMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI--MSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC--ccccEEEEEECCEEE
Confidence 445667888898666444332 22223444444422 234433 344 4799998 477665
No 207
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=45.69 E-value=30 Score=26.01 Aligned_cols=35 Identities=14% Similarity=-0.007 Sum_probs=24.9
Q ss_pred cceEEecccCChhHHHH----HHHHHHcCCCceeeecCC
Q 027827 2 TEVQLFGLWGSFFSHRI----EIALKLKGVEYEFIEEDL 36 (218)
Q Consensus 2 ~~~~L~~~~~sp~~~~~----r~~l~~~gi~~~~~~v~~ 36 (218)
|++.+|+-..||||.-. .-++...+++++.+++.+
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 46889999999999843 444555677767666654
No 208
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=43.97 E-value=1.2e+02 Score=21.72 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=33.7
Q ss_pred eEEecccCChhHHHHHHHHHH-----cCCCceeeecCCCCCchhhhh-hCCCC----CcccEEE--eCCeEee
Q 027827 4 VQLFGLWGSFFSHRIEIALKL-----KGVEYEFIEEDLSNKSPLLLQ-YNSIH----KKVPVLV--HKGNPIA 64 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~-----~gi~~~~~~v~~~~~~~~~~~-~~p~~----~~vP~l~--~~g~~i~ 64 (218)
+..++.++||.|+...-.++. .+-.+.+..|+.... ++..+ .+-.. +.+|+++ .+|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 456777889999966544432 223355566665543 33332 23220 1389888 5777654
No 209
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=43.58 E-value=82 Score=19.80 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=33.0
Q ss_pred eEEecccCChhHHHHHHHHHHc----CCCceeeecCCCCCchhhhhhCCCCCcccEEE--eCCeE
Q 027827 4 VQLFGLWGSFFSHRIEIALKLK----GVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGNP 62 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~ 62 (218)
+..++.++|+.|++..-.+... +-.+....++... .+.+...-.- ..+|+++ ++|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~l~~~~~i-~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA-QPQIAQQFGV-QALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC-CHHHHHHcCC-CCCCEEEEEeCCEE
Confidence 4456677889999775555432 2234455555554 3444433333 4799888 56654
No 210
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=42.75 E-value=29 Score=25.74 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=17.9
Q ss_pred eEEecccCChhHHHHHHHHHH
Q 027827 4 VQLFGLWGSFFSHRIEIALKL 24 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~ 24 (218)
+.+|+-+.||||++..-.+..
T Consensus 81 i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 81 VYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEECCCCccHHHHHHHHhh
Confidence 677888899999999888774
No 211
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=41.98 E-value=89 Score=20.64 Aligned_cols=61 Identities=23% Similarity=0.270 Sum_probs=33.7
Q ss_pred eEEecccCChhHHHHHHHHHHcCC---CceeeecCCCCCchhhhhhCCCCCcccEEE--eCCeEeeecH
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGV---EYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGNPIAESR 67 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~i~eS~ 67 (218)
+..++.++|+.|+.+.-.++...- ...+..++.... .+....-- ..+|+++ .+|..+..-.
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~l~~~~~i-~~~Pt~~~f~~G~~v~~~~ 93 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--FLVNYLDI-KVLPTLLVYKNGELIDNIV 93 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--HHHHhcCC-CcCCEEEEEECCEEEEEEe
Confidence 345677889989876655543211 123344444332 44333233 4799988 4787665433
No 212
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=41.82 E-value=1.7e+02 Score=22.94 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHh
Q 027827 67 RVILEYIDDTWKGHPILPENPHERANARFWAQFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENEL 138 (218)
Q Consensus 67 ~~I~~yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L 138 (218)
..|-..+.+... ..--|++++..+.+.+.+...=+........++ ..+.+.+++...++.||..|
T Consensus 7 qLI~~lf~RL~~-ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vl------vQE~AL~~a~~ri~eLe~ql 71 (247)
T PF09849_consen 7 QLIDDLFSRLKQ-AEAQPRDPEAEALIAQALARQPDAPYYLAQTVL------VQEQALKQAQARIQELEAQL 71 (247)
T ss_pred HHHHHHHHHHHh-ccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 445555555432 122388888887777766543332222211111 25667888888889999997
No 213
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=41.71 E-value=40 Score=25.96 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=18.0
Q ss_pred eEEecccCChhHHHHHHHHHHc
Q 027827 4 VQLFGLWGSFFSHRIEIALKLK 25 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~ 25 (218)
+++|+-+.||||++..--+...
T Consensus 111 I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 111 ITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEECCCChHHHHHHHHHHHH
Confidence 6788889999999998776653
No 214
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=41.61 E-value=61 Score=21.88 Aligned_cols=84 Identities=13% Similarity=0.167 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHhhcCcc---hHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 027827 67 RVILEYIDDTWKGHPILPENPHERANARFWAQFIDEKCRVALRNAYGCQE---KEREEEATREACELLKTLENELKNRRF 143 (218)
Q Consensus 67 ~~I~~yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~le~~L~~~~f 143 (218)
.+.++||.+..+ +|-...........+.+.+.+.+...+...+..++ .+.+....++.......|++.|++
T Consensus 9 ~~LI~yLte~L~---lFe~~~~~~~~~~Tv~d~vee~ia~~im~vc~Qnp~L~~~~R~~iirE~Daiv~DLeEVLa~--- 82 (113)
T PF12290_consen 9 DALIEYLTENLS---LFESSQSGDTGDETVEDVVEEQIASQIMAVCEQNPELEFSQRFQIIREADAIVYDLEEVLAS--- 82 (113)
T ss_pred HHHHHHHHHhHH---HhcCCCCCCcccchHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 467889987654 44311112222233344555555555555566543 233566677888888899999964
Q ss_pred ecCCCCChhHHHH
Q 027827 144 FGGDKIGLVDIVA 156 (218)
Q Consensus 144 l~G~~~t~aD~~l 156 (218)
..+..+|-.-+.+
T Consensus 83 V~~~~aT~eQ~~F 95 (113)
T PF12290_consen 83 VWNQKATNEQIAF 95 (113)
T ss_pred HHcCCCCHHHHHH
Confidence 1224566665553
No 215
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=41.35 E-value=30 Score=22.64 Aligned_cols=20 Identities=20% Similarity=0.109 Sum_probs=14.0
Q ss_pred eEEecccCChhHHHHHHHHH
Q 027827 4 VQLFGLWGSFFSHRIEIALK 23 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~ 23 (218)
+.+++.+.||||++..-.+.
T Consensus 9 v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 9 VVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHH
Confidence 56778899999998866655
No 216
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=39.31 E-value=1e+02 Score=20.88 Aligned_cols=56 Identities=11% Similarity=0.110 Sum_probs=32.6
Q ss_pred EecccCChhHHHHHHHHHHcCCC----ceeeecCCCCCchhhhhhCCCCCcccEEE--eCCeEe
Q 027827 6 LFGLWGSFFSHRIEIALKLKGVE----YEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGNPI 63 (218)
Q Consensus 6 L~~~~~sp~~~~~r~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~i 63 (218)
-++-++||-|+.+.=.++..--. ..+..||.+. .+++....-- ..+|++. .+|..+
T Consensus 20 ~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~-~~~la~~~~V-~~iPTf~~fk~G~~v 81 (114)
T cd02954 20 RFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE-VPDFNKMYEL-YDPPTVMFFFRNKHM 81 (114)
T ss_pred EEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC-CHHHHHHcCC-CCCCEEEEEECCEEE
Confidence 36777888898775555443222 2344555554 3455444333 4699988 477665
No 217
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=38.99 E-value=53 Score=23.69 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=26.1
Q ss_pred CChhHHHHHHHHHHcCCCceeeecCCCCCchh
Q 027827 11 GSFFSHRIEIALKLKGVEYEFIEEDLSNKSPL 42 (218)
Q Consensus 11 ~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~ 42 (218)
.-|.++++...|+..||+|+.........++.
T Consensus 10 D~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~ 41 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIPYELRVVSAHRTPEL 41 (156)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEECcccCHHH
Confidence 34899999999999999999998877643333
No 218
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=38.33 E-value=23 Score=24.58 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=25.1
Q ss_pred eEEecccCChhHHH----HHHHHHHc-CCCceeeecCCC-CCchhhhhhCCCCCcccEEE
Q 027827 4 VQLFGLWGSFFSHR----IEIALKLK-GVEYEFIEEDLS-NKSPLLLQYNSIHKKVPVLV 57 (218)
Q Consensus 4 ~~L~~~~~sp~~~~----~r~~l~~~-gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~l~ 57 (218)
+.+++-++||.|++ +.-+++.. +|++.....|-. ..-+.|+. +-. ..||+++
T Consensus 45 ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~-~~IP~~I 102 (129)
T PF14595_consen 45 ILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGG-RSIPTFI 102 (129)
T ss_dssp EEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS---SSEEE
T ss_pred EEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCC-eecCEEE
Confidence 56777889999994 34444555 666665544311 11223444 444 5899988
No 219
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=37.94 E-value=40 Score=21.38 Aligned_cols=52 Identities=12% Similarity=0.019 Sum_probs=28.8
Q ss_pred eEEecccCChhHHHHHHHHHH-----cCC-CceeeecCCCCCchhhhhhCCCCCcccEEE
Q 027827 4 VQLFGLWGSFFSHRIEIALKL-----KGV-EYEFIEEDLSNKSPLLLQYNSIHKKVPVLV 57 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~-----~gi-~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (218)
+.+|+.++|+.|+...-.+.. .+- .+....++... .+.+...... ..+|++.
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~i-~~~P~~~ 74 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA-EKDLASRFGV-SGFPTIK 74 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc-hHHHHHhCCC-CcCCEEE
Confidence 677888899999975444432 221 13344444332 3444433333 4799875
No 220
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=37.93 E-value=43 Score=26.18 Aligned_cols=20 Identities=10% Similarity=0.037 Sum_probs=16.4
Q ss_pred eEEecccCChhHHHHHHHHH
Q 027827 4 VQLFGLWGSFFSHRIEIALK 23 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~ 23 (218)
+.+|+-+.||||++..-.+.
T Consensus 121 I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEECCCChhHHHHHHHHH
Confidence 56778889999999987765
No 221
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=37.81 E-value=32 Score=20.44 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=20.1
Q ss_pred EEecccCChhHHHHHHHHHHcCCCceeeecCCC
Q 027827 5 QLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLS 37 (218)
Q Consensus 5 ~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~ 37 (218)
+||++...--++.++-+|+..||++........
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~ 34 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEHMS 34 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S----
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCccc
Confidence 677777777889999999999999998765433
No 222
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=37.50 E-value=1.1e+02 Score=19.41 Aligned_cols=57 Identities=11% Similarity=0.057 Sum_probs=29.3
Q ss_pred eEEecccCChhHHHHHHHH----HHcC--CCceeeecCCCC-CchhhhhhCCCCCcccEEE--eCCe
Q 027827 4 VQLFGLWGSFFSHRIEIAL----KLKG--VEYEFIEEDLSN-KSPLLLQYNSIHKKVPVLV--HKGN 61 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l----~~~g--i~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~--~~g~ 61 (218)
+.+++.++|+.|+...-.+ .... -.+....++... ..+.+.....- ..+|+++ .+|.
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i-~~~Pt~~~~~~g~ 86 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV-KGFPTFKYFENGK 86 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC-ccccEEEEEeCCC
Confidence 4567778899999764222 2221 223343444432 13344333233 4789887 3554
No 223
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=37.31 E-value=85 Score=20.13 Aligned_cols=52 Identities=13% Similarity=-0.057 Sum_probs=29.2
Q ss_pred eEEecccCChhHHHHHHHHHHc----CCCceeeecCCCCCchhhhhhCCCCCcccEEE
Q 027827 4 VQLFGLWGSFFSHRIEIALKLK----GVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV 57 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (218)
+..++.++|+.|++..-.+... +-.+.+..++... .+.+.....- ..+|++.
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~i-~~~Pt~~ 78 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK-YESLCQQANI-RAYPTIR 78 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc-hHHHHHHcCC-CcccEEE
Confidence 4567778899998765444332 2124444555544 3444333333 5799887
No 224
>PRK13947 shikimate kinase; Provisional
Probab=37.31 E-value=51 Score=23.56 Aligned_cols=32 Identities=13% Similarity=0.056 Sum_probs=28.3
Q ss_pred CcceEEecccCChhHHHHHHHHHHcCCCceee
Q 027827 1 MTEVQLFGLWGSFFSHRIEIALKLKGVEYEFI 32 (218)
Q Consensus 1 m~~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~ 32 (218)
|..+.|.|.++|+=+...+.+.+..|.+|-..
T Consensus 1 m~~I~l~G~~GsGKst~a~~La~~lg~~~id~ 32 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKRVATTLSFGFIDT 32 (171)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 77899999999999999999999999887443
No 225
>PRK13949 shikimate kinase; Provisional
Probab=36.07 E-value=56 Score=23.68 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=27.9
Q ss_pred CcceEEecccCChhHHHHHHHHHHcCCCceee
Q 027827 1 MTEVQLFGLWGSFFSHRIEIALKLKGVEYEFI 32 (218)
Q Consensus 1 m~~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~ 32 (218)
|.++.|.|.++|+=+.-.+.+.+..|.++-..
T Consensus 1 m~~I~liG~~GsGKstl~~~La~~l~~~~id~ 32 (169)
T PRK13949 1 MARIFLVGYMGAGKTTLGKALARELGLSFIDL 32 (169)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCeecc
Confidence 77799999999999999999999999775543
No 226
>PRK09266 hypothetical protein; Provisional
Probab=36.01 E-value=56 Score=25.61 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=38.9
Q ss_pred HHHHcCCCceeeecCCC---CCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcC
Q 027827 21 ALKLKGVEYEFIEEDLS---NKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTW 77 (218)
Q Consensus 21 ~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~ 77 (218)
.+...|+++++..++.. ..++-|.--+-. |-+|+-..|+..+.++..|.+.|.+.|
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~-gi~pV~~i~~~~~~~~~~~~~~l~~~~ 258 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWR-GQRAVSAIDDVALPDSHALLELLRRAY 258 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCcc-ceEEEEEECCEECCCCchHHHHHHHHH
Confidence 45566999999988765 333444444444 789999988877765567777777665
No 227
>PF12972 NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain; InterPro: IPR024732 Alpha-N-acetylglucosaminidase is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB, or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This C-terminal domain has an all alpha helical fold [].; PDB: 2VC9_A 2VCC_A 2VCB_A 2VCA_A 4A4A_A.
Probab=35.54 E-value=1.6e+02 Score=23.35 Aligned_cols=52 Identities=23% Similarity=0.245 Sum_probs=32.2
Q ss_pred HHHhhcCcchHHHHHHHHHHHHHHHHHHHHhcCCC-eec----------CCCCChhHHHHHHH
Q 027827 108 LRNAYGCQEKEREEEATREACELLKTLENELKNRR-FFG----------GDKIGLVDIVANFI 159 (218)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~-fl~----------G~~~t~aD~~l~~~ 159 (218)
+...|............+++...|..++..|+.++ |++ |....-.|..-+.+
T Consensus 113 ~~~ay~~~d~~~~~~~~~~~l~ll~dlD~lL~t~~~f~Lg~Wi~~Ar~~g~~~~e~~~yE~NA 175 (267)
T PF12972_consen 113 LVDAYNSKDIEAFKALSARFLELLDDLDRLLATNPEFLLGKWIEDARAWGTTPEEKDLYEYNA 175 (267)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHTT-GGGBHHHHHHHHHHSSTT--HHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33445544444477788899999999999997643 444 44556666665554
No 228
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=34.87 E-value=1.6e+02 Score=20.57 Aligned_cols=59 Identities=14% Similarity=0.114 Sum_probs=30.3
Q ss_pred eEEecccCChhHHHHHHHHHH----cCCCceeeecCCCCC-chhhhhhCCCCCcccEEE--e-CCeEe
Q 027827 4 VQLFGLWGSFFSHRIEIALKL----KGVEYEFIEEDLSNK-SPLLLQYNSIHKKVPVLV--H-KGNPI 63 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~----~gi~~~~~~v~~~~~-~~~~~~~~p~~~~vP~l~--~-~g~~i 63 (218)
+..|+.++|+.|+...-.+.. .+-.+.++.++.... ...+....-- ..+|+++ + +|..+
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V-~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV-DGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC-CCCCEEEEECCCCCEE
Confidence 345566789999866554432 222244454444421 1233332222 4689777 3 56554
No 229
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=34.77 E-value=1.2e+02 Score=19.13 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=30.5
Q ss_pred eEEecccCChhHHHHHHHH-----HHcC--CCceeeecCCCCCchhhhhhCCCCCcccEEE--eCCe
Q 027827 4 VQLFGLWGSFFSHRIEIAL-----KLKG--VEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGN 61 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l-----~~~g--i~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~ 61 (218)
+..++.++|+.|+...-.+ ...+ -.+.+..++......-....+. ..+|++. .+|.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~g~ 84 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQV--RGYPTLLLFKDGE 84 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCC--CcCCEEEEEeCCC
Confidence 4566777899999654333 2333 2355555655432222233343 4799877 3554
No 230
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=33.60 E-value=1.3e+02 Score=19.33 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=30.5
Q ss_pred eEEecccCChhHHHHHHHHHH----cC-CCceeeecCCCCCchhhhhhCCCCCcccEEE--eCCeEe
Q 027827 4 VQLFGLWGSFFSHRIEIALKL----KG-VEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGNPI 63 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~----~g-i~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~i 63 (218)
+..++.++|+.|+...-.+.. .+ -...+..++.+ ..+.....+- ..+|++. .+|..+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v--~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRG--KCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCC--CcCcEEEEEECCEEE
Confidence 455677889999976544432 12 12334444444 2222223333 4789877 477654
No 231
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=33.46 E-value=75 Score=16.85 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=19.8
Q ss_pred CcccEEEeCCeEeeecHHHHHHHH
Q 027827 51 KKVPVLVHKGNPIAESRVILEYID 74 (218)
Q Consensus 51 ~~vP~l~~~g~~i~eS~~I~~yL~ 74 (218)
|.+|....++..+.....|-+|++
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 25 GELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred CCCCeEEeCCeEEEeHHHHHHHHh
Confidence 688887777888888888888875
No 232
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=33.28 E-value=53 Score=20.28 Aligned_cols=22 Identities=14% Similarity=-0.189 Sum_probs=17.2
Q ss_pred eEEecccCChhHHHHHHHHHHc
Q 027827 4 VQLFGLWGSFFSHRIEIALKLK 25 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~ 25 (218)
+.+|....||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4678888999999887777654
No 233
>PTZ00102 disulphide isomerase; Provisional
Probab=32.79 E-value=2.3e+02 Score=24.09 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=42.4
Q ss_pred eEEecccCChhHHHHHHHH-------HHcCCCceeeecCCCCCchhhh-hhCCCCCcccEEE--eCCeEe-----eecHH
Q 027827 4 VQLFGLWGSFFSHRIEIAL-------KLKGVEYEFIEEDLSNKSPLLL-QYNSIHKKVPVLV--HKGNPI-----AESRV 68 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l-------~~~gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~l~--~~g~~i-----~eS~~ 68 (218)
+..++.++|++|++..=.+ ...+-++....++... ...+. +.+- ..+|++. .+|..+ .....
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~-~~~l~~~~~i--~~~Pt~~~~~~g~~~~y~g~~~~~~ 129 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE-EMELAQEFGV--RGYPTIKFFNKGNPVNYSGGRTADG 129 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC-CHHHHHhcCC--CcccEEEEEECCceEEecCCCCHHH
Confidence 5677788999999664221 2223445566666544 23333 3343 4689887 455432 34566
Q ss_pred HHHHHHhcCC
Q 027827 69 ILEYIDDTWK 78 (218)
Q Consensus 69 I~~yL~~~~~ 78 (218)
|.+|+.+..+
T Consensus 130 l~~~l~~~~~ 139 (477)
T PTZ00102 130 IVSWIKKLTG 139 (477)
T ss_pred HHHHHHHhhC
Confidence 8899888753
No 234
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=32.20 E-value=1.4e+02 Score=19.00 Aligned_cols=52 Identities=10% Similarity=0.039 Sum_probs=29.5
Q ss_pred eEEecccCChhHHHHHHHHHH-----cCCCceeeecCCCCCchhhhhhCCCCCcccEEE
Q 027827 4 VQLFGLWGSFFSHRIEIALKL-----KGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV 57 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (218)
+..++.++||.|+...-.+.. .+..+.+..++... .+.+.+...- ..+|++.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-~~~~~~~~~i-~~~Pt~~ 76 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-EPGLSGRFFV-TALPTIY 76 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-CHhHHHHcCC-cccCEEE
Confidence 456777889999865544332 23344555555543 3344333333 5799887
No 235
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=31.93 E-value=1.4e+02 Score=19.21 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=29.3
Q ss_pred eEEecccCChhHHHHHHHHHH-----cCCCceeeecCCCCCchhhhhhCCCCCcccEEE--eCC
Q 027827 4 VQLFGLWGSFFSHRIEIALKL-----KGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKG 60 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g 60 (218)
+..++.++|+.|++..-.++. .++ ....++..+..+.+....-- ..+|++. ++|
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~--~~~~vd~~~~~~~l~~~~~V-~~~PT~~lf~~g 82 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQI--RHLAIEESSIKPSLLSRYGV-VGFPTILLFNST 82 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccC--ceEEEECCCCCHHHHHhcCC-eecCEEEEEcCC
Confidence 455677789999977644433 333 33344433223444333233 4789877 455
No 236
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=31.06 E-value=20 Score=24.34 Aligned_cols=63 Identities=10% Similarity=0.066 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCCCceeeecCCCCC-chhhhhhCCCCCcccEEEe---CCeEeeecHHHHHHHHhcC
Q 027827 15 SHRIEIALKLKGVEYEFIEEDLSNK-SPLLLQYNSIHKKVPVLVH---KGNPIAESRVILEYIDDTW 77 (218)
Q Consensus 15 ~~~~r~~l~~~gi~~~~~~v~~~~~-~~~~~~~~p~~~~vP~l~~---~g~~i~eS~~I~~yL~~~~ 77 (218)
..-++=+....|++.+...++-... ..+-....|+.|.+|+++| -..+.-|...|+.||+++.
T Consensus 25 P~LakEl~e~~g~~I~~~r~~~~~~l~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 25 PALAKELEEEEGISIEGYRLDEEQVLEEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhccCCCceeeeechhhhhhhhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3345556667888877655542210 0111112333378888876 3566778888999998764
No 237
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=30.56 E-value=3e+02 Score=24.05 Aligned_cols=73 Identities=15% Similarity=0.121 Sum_probs=47.2
Q ss_pred eEEecccCChhHHH-------HHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEe--CCeE------eeecHH
Q 027827 4 VQLFGLWGSFFSHR-------IEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVH--KGNP------IAESRV 68 (218)
Q Consensus 4 ~~L~~~~~sp~~~~-------~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~--~g~~------i~eS~~ 68 (218)
+.-|+-++|+.|.+ +--.|.+.|=+.....||.... ..+-...-- .-.|+|.. ||.. ..+...
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y~v-~gyPTlkiFrnG~~~~~Y~G~r~adg 123 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKYEV-RGYPTLKIFRNGRSAQDYNGPREADG 123 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhhcC-CCCCeEEEEecCCcceeccCcccHHH
Confidence 45677778888873 4455556666888888876643 223222222 35788873 6653 467788
Q ss_pred HHHHHHhcCC
Q 027827 69 ILEYIDDTWK 78 (218)
Q Consensus 69 I~~yL~~~~~ 78 (218)
|+.||-++.+
T Consensus 124 Iv~wl~kq~g 133 (493)
T KOG0190|consen 124 IVKWLKKQSG 133 (493)
T ss_pred HHHHHHhccC
Confidence 9999998874
No 238
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=30.49 E-value=1.8e+02 Score=19.84 Aligned_cols=55 Identities=16% Similarity=0.108 Sum_probs=28.4
Q ss_pred cCChhHHHHHHHH----HHcCCCceeeecCCCC------CchhhhhhCCCCC-cccEEE--eCCeEeee
Q 027827 10 WGSFFSHRIEIAL----KLKGVEYEFIEEDLSN------KSPLLLQYNSIHK-KVPVLV--HKGNPIAE 65 (218)
Q Consensus 10 ~~sp~~~~~r~~l----~~~gi~~~~~~v~~~~------~~~~~~~~~p~~~-~vP~l~--~~g~~i~e 65 (218)
++||.|+++.-.+ ....-.+.+..|+.+. ...++...--- . .+|++. .+|..+.|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-TTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-ccCCCEEEEEcCCceecc
Confidence 5899999665433 3333234555555442 12344332111 3 699888 35555544
No 239
>PRK08118 topology modulation protein; Reviewed
Probab=30.42 E-value=79 Score=22.82 Aligned_cols=31 Identities=19% Similarity=0.041 Sum_probs=27.8
Q ss_pred CcceEEecccCChhHHHHHHHHHHcCCCcee
Q 027827 1 MTEVQLFGLWGSFFSHRIEIALKLKGVEYEF 31 (218)
Q Consensus 1 m~~~~L~~~~~sp~~~~~r~~l~~~gi~~~~ 31 (218)
|.++.+.|.++|+=+.-++.+.+..|+++..
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~ 31 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHH 31 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCcee
Confidence 7889999999999999999999999998543
No 240
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=30.17 E-value=1.2e+02 Score=19.64 Aligned_cols=56 Identities=16% Similarity=0.092 Sum_probs=31.4
Q ss_pred eEEecccCChhHHHHHHHHHHc-----C-C----CceeeecCCCCCchhhhhhCCCCCcccEEE--eCCe
Q 027827 4 VQLFGLWGSFFSHRIEIALKLK-----G-V----EYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGN 61 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~-----g-i----~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~ 61 (218)
+..++.++|+.|+...-.+... + . .+.+..++.... +++....-- ..+|++. .+|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~~l~~~~~v-~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-SDIADRYRI-NKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-HHHHHhCCC-CcCCEEEEEeCCc
Confidence 4566788899999776555321 1 1 234445555443 344333333 5799887 3554
No 241
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=30.14 E-value=1.1e+02 Score=18.60 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=26.4
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceeeecC
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVEYEFIEED 35 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~ 35 (218)
.-+..|.....+.++.-.|...|+++++.+++
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P 34 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLIPTP 34 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 34556666789999999999999999998775
No 242
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=29.92 E-value=1.1e+02 Score=25.13 Aligned_cols=65 Identities=18% Similarity=0.333 Sum_probs=46.9
Q ss_pred ccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEeeecHHHHHHHHhcCCCCCCC
Q 027827 9 LWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIAESRVILEYIDDTWKGHPIL 83 (218)
Q Consensus 9 ~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~eS~~I~~yL~~~~~~~~l~ 83 (218)
...|||.+-..-.+...| |..+..++..-. ..+ .+.|.+-++|.+ .|-..++++|.++++..+++
T Consensus 87 ~s~s~y~r~L~~~~~~rg--~~~Vv~~~Rgcs-----~~~--n~~p~~yh~G~t-~D~~~~l~~l~~~~~~r~~~ 151 (345)
T COG0429 87 SSNSPYARGLMRALSRRG--WLVVVFHFRGCS-----GEA--NTSPRLYHSGET-EDIRFFLDWLKARFPPRPLY 151 (345)
T ss_pred CCcCHHHHHHHHHHHhcC--CeEEEEeccccc-----CCc--ccCcceecccch-hHHHHHHHHHHHhCCCCceE
Confidence 445688888888888888 888887765211 122 368989888877 77778888888888766665
No 243
>PF12728 HTH_17: Helix-turn-helix domain
Probab=28.94 E-value=1.1e+02 Score=16.82 Aligned_cols=26 Identities=8% Similarity=0.059 Sum_probs=22.0
Q ss_pred CcccEEEeCCeEeeecHHHHHHHHhc
Q 027827 51 KKVPVLVHKGNPIAESRVILEYIDDT 76 (218)
Q Consensus 51 ~~vP~l~~~g~~i~eS~~I~~yL~~~ 76 (218)
|.+|.+..++.....-..|-+|+.++
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 25 GKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred CCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 68988887788889999999998763
No 244
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=27.41 E-value=59 Score=19.27 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=15.5
Q ss_pred eEEec----ccCChhHHHHHHHHHH
Q 027827 4 VQLFG----LWGSFFSHRIEIALKL 24 (218)
Q Consensus 4 ~~L~~----~~~sp~~~~~r~~l~~ 24 (218)
|+||- -..|.||+|+-.+|..
T Consensus 3 mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 3 MKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred ceeeEeecCCchHHHHHHHHHHHhC
Confidence 66664 4457899999988864
No 245
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=27.01 E-value=1.6e+02 Score=21.27 Aligned_cols=30 Identities=10% Similarity=-0.087 Sum_probs=20.8
Q ss_pred ccCChhHH-------HHHHHHHHcCCCceeeecCCCC
Q 027827 9 LWGSFFSH-------RIEIALKLKGVEYEFIEEDLSN 38 (218)
Q Consensus 9 ~~~sp~~~-------~~r~~l~~~gi~~~~~~v~~~~ 38 (218)
-.+||-|+ +..-.+...+-|++++.|+.+.
T Consensus 42 A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~ 78 (157)
T KOG2501|consen 42 AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR 78 (157)
T ss_pred EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC
Confidence 34566666 4555566677789999998774
No 246
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=25.39 E-value=1.7e+02 Score=17.94 Aligned_cols=52 Identities=8% Similarity=-0.076 Sum_probs=31.0
Q ss_pred eEEecccCChhHHHHHHHHHHc------CCCceeeecCCCCCchhhhhhCCCCCcccEEE
Q 027827 4 VQLFGLWGSFFSHRIEIALKLK------GVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV 57 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~------gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (218)
+.+++.++|++|+...-.+... +-.+....++... ...+...-.- ..+|++.
T Consensus 19 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~i-~~~Pt~~ 76 (101)
T cd02961 19 LVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-NNDLCSEYGV-RGYPTIK 76 (101)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-hHHHHHhCCC-CCCCEEE
Confidence 5677788899999876655442 2345555555443 3344333332 4789886
No 247
>PRK06217 hypothetical protein; Validated
Probab=25.22 E-value=1e+02 Score=22.50 Aligned_cols=29 Identities=14% Similarity=0.016 Sum_probs=26.1
Q ss_pred CcceEEecccCChhHHHHHHHHHHcCCCc
Q 027827 1 MTEVQLFGLWGSFFSHRIEIALKLKGVEY 29 (218)
Q Consensus 1 m~~~~L~~~~~sp~~~~~r~~l~~~gi~~ 29 (218)
|.++.|.|.++|+=+..++.+.+..|+++
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~ 29 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPH 29 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 67799999999999999999999999874
No 248
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=25.16 E-value=2e+02 Score=18.57 Aligned_cols=59 Identities=22% Similarity=0.156 Sum_probs=30.9
Q ss_pred eEEecccCChhHHHHHHHHHHcC---CCceeeecCCCCCc--hhhhhhCCCCCcccEEE--eCCeEe
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKG---VEYEFIEEDLSNKS--PLLLQYNSIHKKVPVLV--HKGNPI 63 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~g---i~~~~~~v~~~~~~--~~~~~~~p~~~~vP~l~--~~g~~i 63 (218)
+..++.++|+.|+...=.++... -...+..++.+... .++....-- ..+|+++ .+|..+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V-~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKI-IEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCC-CcCCEEEEEeCCeEE
Confidence 34456677888886654443321 12344455544322 244433333 4699887 377654
No 249
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=24.74 E-value=74 Score=22.51 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=18.5
Q ss_pred cHHHHHHHHHhhcchhhccCCChhhHHHHh
Q 027827 181 PKLYRWSEEFVNCSIIKESLPPRDKLISFM 210 (218)
Q Consensus 181 p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~ 210 (218)
-.|++|++|+.++|-+. ..+++..|+
T Consensus 112 ~~LqrfL~RV~~hP~L~----~d~~l~~FL 137 (140)
T cd06891 112 ANLQRWFNRVCSDPILI----RDEELRFFI 137 (140)
T ss_pred HHHHHHHHHHhCChhhc----cCHHHHHHh
Confidence 48999999999999543 444555444
No 250
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=24.42 E-value=90 Score=19.77 Aligned_cols=53 Identities=9% Similarity=-0.041 Sum_probs=30.0
Q ss_pred eEEecccCChhHHHHHHHHHH----cC--CCceeeecCCCCCchhhhhhCCCCCcccEEE
Q 027827 4 VQLFGLWGSFFSHRIEIALKL----KG--VEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV 57 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~----~g--i~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~ 57 (218)
+..++.++|+.|+...-.+.. .+ -.+....++.....+.+...-.- ..+|++.
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i-~~~P~~~ 80 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGV-SGFPTLK 80 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCC-CCcCEEE
Confidence 567788899999855443322 22 23555555544423444443333 5799887
No 251
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=24.37 E-value=2e+02 Score=21.67 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHcCCCceee---ecCCCCCchhhhhhCCCCCcccEEEe
Q 027827 13 FFSHRIEIALKLKGVEYEFI---EEDLSNKSPLLLQYNSIHKKVPVLVH 58 (218)
Q Consensus 13 p~~~~~r~~l~~~gi~~~~~---~v~~~~~~~~~~~~~p~~~~vP~l~~ 58 (218)
.--.++|..+..++||-+.+ .|++.+....+....-. |++|+++-
T Consensus 146 ~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD~G~w~~lg~~-g~lP~~l~ 193 (200)
T TIGR03759 146 GDDERIRQWANRHQIDPAKVRSRQITLNHDNGRWLQLGLQ-GQLPAVVQ 193 (200)
T ss_pred CCHHHHHHHHHHcCCCHHHeecCeeEEecCcchHHHccCC-CCCCEEEE
Confidence 33456777777777775444 44555555566666645 78998873
No 252
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=24.32 E-value=3.3e+02 Score=20.91 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=38.8
Q ss_pred eEEecccCChhHHHHHHHHHHc----CCCceeeecCCCCCchhhhhhCCCCCcccEEE--eCCeEee------ecHHHHH
Q 027827 4 VQLFGLWGSFFSHRIEIALKLK----GVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGNPIA------ESRVILE 71 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~i~------eS~~I~~ 71 (218)
+..++.++|+.|+...-.++.. +-...+..+|... .+.+.....- ..+|++. ++|..+. ....|.+
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~-~~~l~~~~~I-~~~PTl~~f~~G~~v~~~~G~~s~e~L~~ 133 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR-ALNLAKRFAI-KGYPTLLLFDKGKMYQYEGGDRSTEKLAA 133 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc-cHHHHHHcCC-CcCCEEEEEECCEEEEeeCCCCCHHHHHH
Confidence 4567788899998665444332 2123444455443 3344433333 5799887 5675541 2344555
Q ss_pred HHHhcC
Q 027827 72 YIDDTW 77 (218)
Q Consensus 72 yL~~~~ 77 (218)
++.+.+
T Consensus 134 fi~~~~ 139 (224)
T PTZ00443 134 FALGDF 139 (224)
T ss_pred HHHHHH
Confidence 555554
No 253
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=24.02 E-value=2.1e+02 Score=18.38 Aligned_cols=51 Identities=10% Similarity=0.021 Sum_probs=28.1
Q ss_pred eEEecccCChhHHHHHHHHHH----c---CCCceeeecCCCCCchhhh-hhCCCCCcccEEE
Q 027827 4 VQLFGLWGSFFSHRIEIALKL----K---GVEYEFIEEDLSNKSPLLL-QYNSIHKKVPVLV 57 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~----~---gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~l~ 57 (218)
+..++.++||.|++..-.+.. . +..+....++... .+.+. ..+. ..+|++.
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~I--~~~Pt~~ 77 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA-YSSIASEFGV--RGYPTIK 77 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc-CHhHHhhcCC--ccccEEE
Confidence 455677789999966544322 1 3334444455443 23333 3344 4799887
No 254
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=23.99 E-value=1.3e+02 Score=18.81 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=27.5
Q ss_pred CCeecCCCCChhHHHHHHHHHHHHHHHHhhhhcCCCCCCCcHHHHHHHHHh
Q 027827 141 RRFFGGDKIGLVDIVANFIGFWLGAIQEALEVKLFTEDRFPKLYRWSEEFV 191 (218)
Q Consensus 141 ~~fl~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~ 191 (218)
.+|+. .++ -|+..|+++..+... +..-. +++.-++..|.+++.
T Consensus 34 ~ky~t--~l~-~DvL~~~ll~~L~~~----~r~~~-k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 34 LKYFT--DLG-YDVLTFCLLERLSNP----GRSRL-KDDGTNISQWLQSLA 76 (77)
T ss_pred Hhhcc--hhh-HHHHHHHHHHHHhcc----cchhc-CcCCCCHHHHHHHHh
Confidence 35662 233 488888888777421 22222 456789999999875
No 255
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.79 E-value=2.7e+02 Score=21.36 Aligned_cols=70 Identities=19% Similarity=0.124 Sum_probs=47.0
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceeeecCCCCCchhhhhhCCCCCcccEEEeCCeEee----ecHHHHHHHH
Q 027827 3 EVQLFGLWGSFFSHRIEIALKLKGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLVHKGNPIA----ESRVILEYID 74 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~~~g~~i~----eS~~I~~yL~ 74 (218)
++++|.+..|--|....=.|+.+|+-=.++.++.......+.+. -- -.+|.+..||+.+. |...|-.-+.
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~~~~~-~V-~SvP~Vf~DGel~~~dpVdp~~ies~~~ 85 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFLAFEK-GV-ISVPSVFIDGELVYADPVDPEEIESILS 85 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHHHhhc-ce-eecceEEEcCeEEEcCCCCHHHHHHHHc
Confidence 36888999998899999999999998777777655433333332 22 37898887776643 3444544444
No 256
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=23.62 E-value=94 Score=22.07 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=29.8
Q ss_pred HHhhhhhhHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHhcCCCee
Q 027827 98 QFIDEKCRVALRNAYGCQEKEREEEATREACELLKTLENELKNRRFF 144 (218)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl 144 (218)
.++++.+.|.+...++..... .....+.+......+|++++|+-++
T Consensus 9 ~YiDTaliPL~~i~~~~~~k~-~a~~~E~~~~l~~~lErqfKGRv~l 54 (142)
T PF10673_consen 9 EYIDTALIPLIPIDFGEDMKE-AASQGEFLRLLADELERQFKGRVLL 54 (142)
T ss_pred cccceeeeeccccCccccHHH-HHHHHHHHHHHHHHHHHhcCceEEe
Confidence 456666666655555444444 5566777788888889988876444
No 257
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=23.53 E-value=2.2e+02 Score=19.04 Aligned_cols=55 Identities=9% Similarity=-0.080 Sum_probs=31.7
Q ss_pred eEEecccCChhHHHHHHHHHHcCCC----ceeeecCCCCCchhhh--hhCCCCCcccEEE--eCCe
Q 027827 4 VQLFGLWGSFFSHRIEIALKLKGVE----YEFIEEDLSNKSPLLL--QYNSIHKKVPVLV--HKGN 61 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~gi~----~~~~~v~~~~~~~~~~--~~~p~~~~vP~l~--~~g~ 61 (218)
+..++-++|+.|+...-.+++..-. ..+..|+... .+... +.+. ..+|+|. .+|.
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~-~~~l~~~~~~I--~~~PTl~lf~~g~ 95 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW-PQGKCRKQKHF--FYFPVIHLYYRSR 95 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC-ChHHHHHhcCC--cccCEEEEEECCc
Confidence 4567788899999776665554322 3445555443 33333 2333 4789887 3554
No 258
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=23.51 E-value=1.1e+02 Score=22.11 Aligned_cols=32 Identities=9% Similarity=0.024 Sum_probs=20.7
Q ss_pred eEEecccCChhHHHH----HHHHHHcCCCceeeecC
Q 027827 4 VQLFGLWGSFFSHRI----EIALKLKGVEYEFIEED 35 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~----r~~l~~~gi~~~~~~v~ 35 (218)
+.+|+-..||||... +-+.+..++.++.+.+.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 457888899999854 33444456666665553
No 259
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=23.02 E-value=2.1e+02 Score=18.25 Aligned_cols=53 Identities=11% Similarity=-0.033 Sum_probs=28.6
Q ss_pred eEEecccCChhHHHHHHHHHHc----CCCceeeecCCCC-CchhhhhhCCCCCcccEEE
Q 027827 4 VQLFGLWGSFFSHRIEIALKLK----GVEYEFIEEDLSN-KSPLLLQYNSIHKKVPVLV 57 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~~~----gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~l~ 57 (218)
+..++.++|+.|+...-.+... +-.+.+..++... ..+.+.....- ..+|++.
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i-~~~Pt~~ 79 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGV-QGFPTLK 79 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCC-CcCCEEE
Confidence 5667788899999664333322 2223444444443 13344433333 5799887
No 260
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=22.60 E-value=1.9e+02 Score=17.52 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.0
Q ss_pred cccEEEeCCeEeeecHHHHHHHHhcC
Q 027827 52 KVPVLVHKGNPIAESRVILEYIDDTW 77 (218)
Q Consensus 52 ~vP~l~~~g~~i~eS~~I~~yL~~~~ 77 (218)
+=|++..+| ..+|-.+|.+||.+..
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~~~ 39 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQNG 39 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCTTS
T ss_pred hCceeCCcC-CEEcHHHHHHHHHcCC
Confidence 458888788 8899999999999833
No 261
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=22.40 E-value=3.8e+02 Score=22.48 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=41.8
Q ss_pred eEEecccCChhHHHHHHHHH-----Hc--CCCceeeecCCCCCchhhhhhCCCCCcccEEE--eCCeE-e------eecH
Q 027827 4 VQLFGLWGSFFSHRIEIALK-----LK--GVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGNP-I------AESR 67 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~~l~-----~~--gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~-i------~eS~ 67 (218)
+.+++.++|+.|++..-.+. +. +-.+....++.... .++.....- ..+|++. .+|.. + .+..
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i-~~~Pt~~~~~~g~~~~~~~~g~~~~~ 99 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLAQKYGV-SGYPTLKIFRNGEDSVSDYNGPRDAD 99 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHHHhCCC-ccccEEEEEeCCccceeEecCCCCHH
Confidence 56677888999997643222 22 32355566665542 344333232 4689887 34543 1 3556
Q ss_pred HHHHHHHhcCC
Q 027827 68 VILEYIDDTWK 78 (218)
Q Consensus 68 ~I~~yL~~~~~ 78 (218)
.|.+++.+..+
T Consensus 100 ~l~~~i~~~~~ 110 (462)
T TIGR01130 100 GIVKYMKKQSG 110 (462)
T ss_pred HHHHHHHHhcC
Confidence 78888877653
No 262
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.87 E-value=1.6e+02 Score=22.66 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=17.2
Q ss_pred eEEecccCChhHH----HHHHHHHHcCCCc
Q 027827 4 VQLFGLWGSFFSH----RIEIALKLKGVEY 29 (218)
Q Consensus 4 ~~L~~~~~sp~~~----~~r~~l~~~gi~~ 29 (218)
+.+|+-..||||. +..-++...+-.+
T Consensus 8 I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 8 IDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred EEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 6778888899998 4444555554333
No 263
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=21.52 E-value=2.8e+02 Score=18.99 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=35.9
Q ss_pred eEEecccCChhHHHHHH-------HHHHcCCCceeeecCCCCCchhhhh--------hCCCCCcccEEE--e-CCeEeee
Q 027827 4 VQLFGLWGSFFSHRIEI-------ALKLKGVEYEFIEEDLSNKSPLLLQ--------YNSIHKKVPVLV--H-KGNPIAE 65 (218)
Q Consensus 4 ~~L~~~~~sp~~~~~r~-------~l~~~gi~~~~~~v~~~~~~~~~~~--------~~p~~~~vP~l~--~-~g~~i~e 65 (218)
+..++..+|++|++..- ......-.|..+.+|.... ++... ..-. +-+|+++ + +|..+..
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~-~~~~~~~~~~~~~~~~~-~G~Pt~vfl~~~G~~~~~ 96 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREER-PDVDKIYMNAAQAMTGQ-GGWPLNVFLTPDLKPFFG 96 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcC-cHHHHHHHHHHHHhcCC-CCCCEEEEECCCCCEEee
Confidence 34467788999997742 2222234677777776543 22211 1122 4689887 2 6888877
Q ss_pred c
Q 027827 66 S 66 (218)
Q Consensus 66 S 66 (218)
+
T Consensus 97 ~ 97 (124)
T cd02955 97 G 97 (124)
T ss_pred e
Confidence 6
No 264
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=21.50 E-value=1.5e+02 Score=25.26 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=29.6
Q ss_pred cceEEecccCChhHHHHHHHHHHcCCCceeeec
Q 027827 2 TEVQLFGLWGSFFSHRIEIALKLKGVEYEFIEE 34 (218)
Q Consensus 2 ~~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v 34 (218)
+.|+|||.|+++=+--++++....+.+|+...-
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA 81 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSA 81 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecc
Confidence 569999999999999999999999999887743
No 265
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=21.42 E-value=3.3e+02 Score=19.84 Aligned_cols=64 Identities=14% Similarity=-0.021 Sum_probs=34.3
Q ss_pred EEecccCChhHHHHHHHHHH---cCCCceeeecCCCCCchhhhhhCCCCCcccEEE--eCCeEeeecHHHHH
Q 027827 5 QLFGLWGSFFSHRIEIALKL---KGVEYEFIEEDLSNKSPLLLQYNSIHKKVPVLV--HKGNPIAESRVILE 71 (218)
Q Consensus 5 ~L~~~~~sp~~~~~r~~l~~---~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~l~--~~g~~i~eS~~I~~ 71 (218)
..++.++|+-|+.+--.|.. .--.+.+..|+.... ......+- ..+|++. .+|..+..-.-..+
T Consensus 88 V~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~f~v-~~vPTlllyk~G~~v~~~vG~~~ 156 (175)
T cd02987 88 VHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDEFDT-DALPALLVYKGGELIGNFVRVTE 156 (175)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHhCCC-CCCCEEEEEECCEEEEEEechHH
Confidence 34566788888855433322 111344555554432 34444454 5799988 48877654333333
No 266
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=20.70 E-value=1.6e+02 Score=21.38 Aligned_cols=31 Identities=19% Similarity=-0.016 Sum_probs=19.9
Q ss_pred ceEEecccCChhHHH----HHHHHHHc--CCCceeee
Q 027827 3 EVQLFGLWGSFFSHR----IEIALKLK--GVEYEFIE 33 (218)
Q Consensus 3 ~~~L~~~~~sp~~~~----~r~~l~~~--gi~~~~~~ 33 (218)
++.+|.-+.||||.. ++-+.+.. +++++...
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~ 38 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHL 38 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEe
Confidence 378899999999983 33334444 55555543
No 267
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=20.57 E-value=2.6e+02 Score=21.74 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=26.5
Q ss_pred cceEEecccCChhHHHHHHHHHHcCCCceeeec
Q 027827 2 TEVQLFGLWGSFFSHRIEIALKLKGVEYEFIEE 34 (218)
Q Consensus 2 ~~~~L~~~~~sp~~~~~r~~l~~~gi~~~~~~v 34 (218)
+.+.|||-|+++=+--++++..+.|.++....-
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg 83 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKITSG 83 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEEEEC
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEeccc
Confidence 347899999999999999999999999876643
No 268
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=20.34 E-value=1.6e+02 Score=23.27 Aligned_cols=33 Identities=24% Similarity=0.073 Sum_probs=23.4
Q ss_pred eEEecccCChhHHH----HHHHHHHcCCCceeeecCC
Q 027827 4 VQLFGLWGSFFSHR----IEIALKLKGVEYEFIEEDL 36 (218)
Q Consensus 4 ~~L~~~~~sp~~~~----~r~~l~~~gi~~~~~~v~~ 36 (218)
+.+++...||||++ ++.+....|++...+.+|-
T Consensus 154 L~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG 190 (256)
T TIGR02739 154 LFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDG 190 (256)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 45667788999994 4556677788777776653
No 269
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=20.08 E-value=97 Score=23.07 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=17.5
Q ss_pred CeEeeecHHHHHHHHhcCC
Q 027827 60 GNPIAESRVILEYIDDTWK 78 (218)
Q Consensus 60 g~~i~eS~~I~~yL~~~~~ 78 (218)
+..|+||..|-+|+.++|+
T Consensus 155 d~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 155 DRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CEEEEcCHHHHHHHHHHcC
Confidence 5689999999999999997
No 270
>PF01552 Pico_P2B: Picornavirus 2B protein; InterPro: IPR002527 Poliovirus infection leads to drastic alterations in membrane permeability late during infection. Proteins 2B and 2BC enhance membrane permeability [, ].; GO: 0000166 nucleotide binding, 0003968 RNA-directed RNA polymerase activity, 0005198 structural molecule activity, 0008233 peptidase activity, 0008234 cysteine-type peptidase activity, 0016740 transferase activity, 0016779 nucleotidyltransferase activity, 0016787 hydrolase activity, 0018144 RNA-protein covalent cross-linking, 0019012 virion
Probab=20.02 E-value=81 Score=20.86 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=16.1
Q ss_pred EecccCChhHHHHHHHHHHcCCCcee
Q 027827 6 LFGLWGSFFSHRIEIALKLKGVEYEF 31 (218)
Q Consensus 6 L~~~~~sp~~~~~r~~l~~~gi~~~~ 31 (218)
|.|...|||.+--.=.+...|+||-.
T Consensus 71 LLGcd~sPw~~LK~Kvc~~lgi~~~~ 96 (99)
T PF01552_consen 71 LLGCDGSPWRWLKSKVCKWLGIPYAE 96 (99)
T ss_pred HhccCCCHHHHHHHHHHhHhCCchHh
Confidence 44566666666666666666666643
Done!