Your job contains 1 sequence.
>027829
MSDVPPPQPPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRH
RDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHA
LDSVELLKRQGLVLNKDVTWVTFHSAYDFGFCTCLYGGLDRVCKALGVERVVGKSHQAGS
DSLLTLHAFLKIKDKHFGNEYELQKYANVLHGLELLEC
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 027829
(218 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2176307 - symbol:CAF1b "CCR4- associated facto... 362 4.1e-59 3
TAIR|locus:2095715 - symbol:CAF1a "CCR4- associated facto... 355 6.6e-59 3
TAIR|locus:2183765 - symbol:AT5G10960 species:3702 "Arabi... 324 2.6e-45 2
TAIR|locus:2200532 - symbol:AT1G15920 species:3702 "Arabi... 277 2.5e-41 2
TAIR|locus:2045512 - symbol:AT2G32070 species:3702 "Arabi... 304 2.8e-40 2
ZFIN|ZDB-GENE-061013-29 - symbol:cnot7 "CCR4-NOT transcri... 224 3.0e-38 3
WB|WBGene00000369 - symbol:ccf-1 species:6239 "Caenorhabd... 220 4.0e-35 3
DICTYBASE|DDB_G0284217 - symbol:DDB_G0284217 "CAF1 family... 256 1.3e-34 2
UNIPROTKB|Q5ZJV9 - symbol:CNOT7 "CCR4-NOT transcription c... 229 4.8e-31 2
UNIPROTKB|Q3ZC01 - symbol:CNOT7 "CCR4-NOT transcription c... 229 4.8e-31 2
UNIPROTKB|E2RMU2 - symbol:CNOT7 "Uncharacterized protein"... 229 4.8e-31 2
UNIPROTKB|Q9UIV1 - symbol:CNOT7 "CCR4-NOT transcription c... 229 4.8e-31 2
MGI|MGI:1298230 - symbol:Cnot7 "CCR4-NOT transcription co... 229 4.8e-31 2
ZFIN|ZDB-GENE-040426-2845 - symbol:cnot8 "CCR4-NOT transc... 231 6.1e-31 2
UNIPROTKB|E1BJH0 - symbol:CNOT8 "Uncharacterized protein"... 224 9.9e-31 2
UNIPROTKB|E2RID4 - symbol:CNOT8 "Uncharacterized protein"... 224 9.9e-31 2
UNIPROTKB|Q9UFF9 - symbol:CNOT8 "CCR4-NOT transcription c... 224 9.9e-31 2
UNIPROTKB|F2Z590 - symbol:CNOT8 "Uncharacterized protein"... 224 9.9e-31 2
MGI|MGI:1916375 - symbol:Cnot8 "CCR4-NOT transcription co... 224 9.9e-31 2
DICTYBASE|DDB_G0285269 - symbol:DDB_G0285269 "CAF1 family... 216 1.3e-30 2
UNIPROTKB|F1NYH4 - symbol:CNOT8 "Uncharacterized protein"... 222 2.0e-30 2
RGD|1306401 - symbol:Cnot8 "CCR4-NOT transcription comple... 221 2.0e-30 2
FB|FBgn0036239 - symbol:Pop2 "Pop2" species:7227 "Drosoph... 241 2.6e-30 2
POMBASE|SPCC18.06c - symbol:caf1 "CCR4-Not complex CAF1 f... 253 3.3e-30 2
SGD|S000005335 - symbol:POP2 "RNase of the DEDD superfami... 232 6.9e-30 3
UNIPROTKB|G4MUF8 - symbol:MGG_01666 "CCR4-NOT transcripti... 198 2.5e-29 3
UNIPROTKB|F1SET4 - symbol:CNOT7 "Uncharacterized protein"... 229 1.7e-27 2
UNIPROTKB|F2Z5J3 - symbol:CNOT7 "Uncharacterized protein"... 229 1.5e-26 2
RGD|1305313 - symbol:Cnot7 "CCR4-NOT transcription comple... 229 1.5e-26 2
UNIPROTKB|B7Z8R1 - symbol:CNOT8 "CCR4-NOT transcription c... 295 4.0e-26 1
UNIPROTKB|E5RIL2 - symbol:CNOT8 "CCR4-NOT transcription c... 295 4.0e-26 1
ASPGD|ASPL0000066297 - symbol:caf1 species:162425 "Emeric... 212 4.1e-25 2
UNIPROTKB|H0YAV9 - symbol:CNOT7 "CCR4-NOT transcription c... 214 5.6e-25 2
UNIPROTKB|E5RGH2 - symbol:CNOT7 "CCR4-NOT transcription c... 229 4.0e-19 1
UNIPROTKB|E5RGE4 - symbol:CNOT8 "CCR4-NOT transcription c... 224 1.4e-18 1
UNIPROTKB|E5RJC5 - symbol:CNOT8 "CCR4-NOT transcription c... 212 2.5e-17 1
UNIPROTKB|E5RK92 - symbol:CNOT8 "CCR4-NOT transcription c... 212 2.5e-17 1
UNIPROTKB|E5RHL9 - symbol:CNOT8 "CCR4-NOT transcription c... 190 5.4e-15 1
UNIPROTKB|E5RHP3 - symbol:CNOT8 "CCR4-NOT transcription c... 190 5.4e-15 1
TAIR|locus:2009220 - symbol:AT1G06450 species:3702 "Arabi... 162 1.4e-14 2
UNIPROTKB|B0AZS3 - symbol:CNOT8 "cDNA FLJ50580, highly si... 130 1.9e-14 2
UNIPROTKB|E5RFJ4 - symbol:CNOT8 "CCR4-NOT transcription c... 171 5.6e-13 1
TAIR|locus:2197669 - symbol:AT1G61470 species:3702 "Arabi... 132 1.4e-12 2
TAIR|locus:2010414 - symbol:AT1G27890 species:3702 "Arabi... 127 2.2e-11 2
TAIR|locus:2029826 - symbol:AT1G27820 species:3702 "Arabi... 127 2.5e-11 2
UNIPROTKB|B7Z9U0 - symbol:CNOT8 "cDNA, FLJ78954, highly s... 130 1.2e-08 1
CGD|CAL0001422 - symbol:POP2 species:5476 "Candida albica... 134 1.2e-06 1
UNIPROTKB|Q5A8L5 - symbol:POP2 "Potential mRNA deadenylas... 134 1.2e-06 1
UNIPROTKB|E5RHG0 - symbol:CNOT8 "CCR4-NOT transcription c... 107 6.5e-06 1
TAIR|locus:2095705 - symbol:AT3G44240 species:3702 "Arabi... 120 1.5e-05 1
>TAIR|locus:2176307 [details] [associations]
symbol:CAF1b "CCR4- associated factor 1b" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0009451 "RNA modification"
evidence=ISS] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IMP] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0042742 "defense response to bacterium"
evidence=IEP] [GO:0000165 "MAPK cascade" evidence=RCA] [GO:0002679
"respiratory burst involved in defense response" evidence=RCA]
[GO:0009693 "ethylene biosynthetic process" evidence=RCA]
[GO:0009738 "abscisic acid mediated signaling pathway"
evidence=RCA] [GO:0009814 "defense response, incompatible
interaction" evidence=RCA] [GO:0009873 "ethylene mediated signaling
pathway" evidence=RCA] [GO:0010200 "response to chitin"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0035556 "intracellular
signal transduction" evidence=RCA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0042742 GO:GO:0006351 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0008408 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 ProtClustDB:CLSN2684465 GO:GO:0000289
EMBL:AB007651 EMBL:AY063985 EMBL:BT001962 IPI:IPI00540783
RefSeq:NP_197617.1 UniGene:At.27479 ProteinModelPortal:Q9FMS6
SMR:Q9FMS6 STRING:Q9FMS6 PRIDE:Q9FMS6 DNASU:832285
EnsemblPlants:AT5G22250.1 GeneID:832285 KEGG:ath:AT5G22250
TAIR:At5g22250 InParanoid:Q9FMS6 OMA:HIMRFCE PhylomeDB:Q9FMS6
Genevestigator:Q9FMS6 Uniprot:Q9FMS6
Length = 278
Score = 362 (132.5 bits), Expect = 4.1e-59, Sum P(3) = 4.1e-59
Identities = 70/121 (57%), Positives = 92/121 (76%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHR-DPAANYNGLKA 72
I+IR+V+ +NL SEF+ IR +++ YP ISMDTEFPGV+ + D ++ R +P YN LK+
Sbjct: 12 IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKS 71
Query: 73 NVDLLNLIQIGLTLSDEEGNLPDLGSGSTY-YIWEFNFKDFDIARHAHALDSVELLKRQG 131
NVD L+LIQ+GLTLSD +GNLPDLG YIWEFNF+DFD+ R HA DS+ELL+R G
Sbjct: 72 NVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHG 131
Query: 132 L 132
+
Sbjct: 132 I 132
Score = 171 (65.3 bits), Expect = 4.1e-59, Sum P(3) = 4.1e-59
Identities = 37/66 (56%), Positives = 48/66 (72%)
Query: 151 FCTC-LYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNEYELQKYANV 209
FC LYGGLDRV ++L V R VGK HQAGSDSLLT AF +++D +F + +K+A V
Sbjct: 213 FCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQAFQRMRDLYFVED-GAEKHAGV 271
Query: 210 LHGLEL 215
L+GLE+
Sbjct: 272 LYGLEV 277
Score = 103 (41.3 bits), Expect = 4.1e-59, Sum P(3) = 4.1e-59
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGF 151
EL+ GL+ N+ V+WVTFHSAYDFG+
Sbjct: 149 ELMMSSGLICNESVSWVTFHSAYDFGY 175
>TAIR|locus:2095715 [details] [associations]
symbol:CAF1a "CCR4- associated factor 1a" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0009451 "RNA
modification" evidence=ISS] [GO:0002213 "defense response to
insect" evidence=IEP] [GO:0009611 "response to wounding"
evidence=IEP;RCA] [GO:0000289 "nuclear-transcribed mRNA poly(A)
tail shortening" evidence=IMP] [GO:0008408 "3'-5' exonuclease
activity" evidence=IDA] [GO:0042742 "defense response to bacterium"
evidence=IEP] [GO:0009612 "response to mechanical stimulus"
evidence=RCA] [GO:0009693 "ethylene biosynthetic process"
evidence=RCA] [GO:0009873 "ethylene mediated signaling pathway"
evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009611 GO:GO:0006355 GO:GO:0046872
GO:GO:0042742 GO:GO:0006351 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0008408 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AL353865 EMBL:AY050848 EMBL:AY117220
IPI:IPI00543904 PIR:T49142 RefSeq:NP_190012.1 UniGene:At.1713
ProteinModelPortal:Q9LXM2 SMR:Q9LXM2 IntAct:Q9LXM2 STRING:Q9LXM2
PRIDE:Q9LXM2 DNASU:823551 EnsemblPlants:AT3G44260.1 GeneID:823551
KEGG:ath:AT3G44260 TAIR:At3g44260 InParanoid:Q9LXM2 OMA:GPEKHAG
PhylomeDB:Q9LXM2 ProtClustDB:CLSN2684465 Genevestigator:Q9LXM2
GO:GO:0000289 Uniprot:Q9LXM2
Length = 280
Score = 355 (130.0 bits), Expect = 6.6e-59, Sum P(3) = 6.6e-59
Identities = 73/120 (60%), Positives = 89/120 (74%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKAN 73
++ REV+ NL SEFE I +ID YP ISMDTEFPGV+ + D +R +P Y LKAN
Sbjct: 17 VVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSD--LRFTNPDDLYTLLKAN 74
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSG-STYYIWEFNFKDFDIARHAHALDSVELLKRQGL 132
VD L+LIQ+GLTLSD GNLPDLG +IWEFNF+DFD+AR AHA DS+ELL+RQG+
Sbjct: 75 VDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGI 134
Score = 173 (66.0 bits), Expect = 6.6e-59, Sum P(3) = 6.6e-59
Identities = 37/66 (56%), Positives = 48/66 (72%)
Query: 151 FCTC-LYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNEYELQKYANV 209
FC L+GGLDRV + L V R VGK HQAGSDSLLT HAF +++D +F + +K+A V
Sbjct: 215 FCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQRMRDLYFVQDGP-EKHAGV 273
Query: 210 LHGLEL 215
L+GLE+
Sbjct: 274 LYGLEV 279
Score = 106 (42.4 bits), Expect = 6.6e-59, Sum P(3) = 6.6e-59
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGF 151
EL+ GLV N++V+WVTFHSAYDFG+
Sbjct: 151 ELMMSSGLVCNEEVSWVTFHSAYDFGY 177
>TAIR|locus:2183765 [details] [associations]
symbol:AT5G10960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0000902 "cell morphogenesis" evidence=RCA] [GO:0007030 "Golgi
organization" evidence=RCA] [GO:0007033 "vacuole organization"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016049 "cell growth"
evidence=RCA] [GO:0048193 "Golgi vesicle transport" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AL365234 EMBL:AY050855 EMBL:AY142489
IPI:IPI00525656 PIR:T50805 RefSeq:NP_196657.1 UniGene:At.25437
ProteinModelPortal:Q9LEU4 SMR:Q9LEU4 STRING:Q9LEU4 PaxDb:Q9LEU4
PRIDE:Q9LEU4 DNASU:830963 EnsemblPlants:AT5G10960.1 GeneID:830963
KEGG:ath:AT5G10960 TAIR:At5g10960 InParanoid:Q9LEU4 OMA:SIMIREV
PhylomeDB:Q9LEU4 ProtClustDB:CLSN2916341 Genevestigator:Q9LEU4
Uniprot:Q9LEU4
Length = 277
Score = 324 (119.1 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 60/125 (48%), Positives = 91/125 (72%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKAN 73
I+IREV+++NL+ EF IR ++D++ I+MDTEFPGVV++P + ++ + NY LK N
Sbjct: 10 IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDL-NYRTLKEN 68
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLV 133
VDLL LIQ+GLT SDE GNLP G+ + IW+FNF++F+I +A +S+ELL++ G+
Sbjct: 69 VDLLKLIQVGLTFSDENGNLPTCGTDK-FCIWQFNFREFNIGEDIYASESIELLRQCGID 127
Query: 134 LNKDV 138
K++
Sbjct: 128 FKKNI 132
Score = 169 (64.5 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 39/78 (50%), Positives = 52/78 (66%)
Query: 140 WVTFHSAYDFG----FCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDK 195
+V F + YD FC L+GGL+R+ + +GVERV G HQAGSDSLLTL +F K+K++
Sbjct: 191 YVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERV-GICHQAGSDSLLTLGSFRKLKER 249
Query: 196 HFGNEYELQKYANVLHGL 213
+F E KY VL+GL
Sbjct: 250 YFPGSTE--KYTGVLYGL 265
>TAIR|locus:2200532 [details] [associations]
symbol:AT1G15920 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 EMBL:AC010924 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 GO:GO:0004535 EMBL:AY080754 EMBL:AY114040 EMBL:AK317215
IPI:IPI00528580 PIR:F86293 RefSeq:NP_173044.1 RefSeq:NP_973838.1
UniGene:At.41908 HSSP:P39008 ProteinModelPortal:Q9S9P2 SMR:Q9S9P2
IntAct:Q9S9P2 DNASU:838162 EnsemblPlants:AT1G15920.1
EnsemblPlants:AT1G15920.2 GeneID:838162 KEGG:ath:AT1G15920
TAIR:At1g15920 InParanoid:Q9S9P2 OMA:ANVNMLK PhylomeDB:Q9S9P2
ProtClustDB:CLSN2679525 Genevestigator:Q9S9P2 Uniprot:Q9S9P2
Length = 286
Score = 277 (102.6 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 60/129 (46%), Positives = 83/129 (64%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVR-----PDSNIRHRDPAANYN 68
I IREV+ NL E I ID +P ++MDTEFPG+V + P+ N NY+
Sbjct: 14 IEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYD 73
Query: 69 GLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLK 128
LKANV++L LIQ+GLTLSDE+GNLP G+ IW+FNF++F++ ALDS+ELL+
Sbjct: 74 TLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQC-IWQFNFREFNVISDMFALDSIELLR 132
Query: 129 RQGLVLNKD 137
+ + L K+
Sbjct: 133 KSAIDLEKN 141
Score = 178 (67.7 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 39/74 (52%), Positives = 50/74 (67%)
Query: 141 VTFHSAYDFGFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNE 200
V + Y GFCT LYGGL+++ + LGV+RV G SHQAGSDSLLTL F+K+K+ F
Sbjct: 206 VVYDIKYLMGFCTNLYGGLEKIAELLGVKRV-GISHQAGSDSLLTLRTFIKMKEFFFTGS 264
Query: 201 YELQKYANVLHGLE 214
L KY+ L GL+
Sbjct: 265 --LLKYSGFLFGLD 276
Score = 95 (38.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGFCTCLYGG 158
ELL G+VLN + WVTFH YDFG+ L G
Sbjct: 153 ELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSG 186
>TAIR|locus:2045512 [details] [associations]
symbol:AT2G32070 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0006499 "N-terminal protein myristoylation" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AC006223 EMBL:AY050946 EMBL:AY142584
IPI:IPI00542830 PIR:F84728 RefSeq:NP_565735.1 UniGene:At.22347
ProteinModelPortal:Q9SKZ2 SMR:Q9SKZ2 PaxDb:Q9SKZ2 PRIDE:Q9SKZ2
EnsemblPlants:AT2G32070.1 GeneID:817767 KEGG:ath:AT2G32070
TAIR:At2g32070 InParanoid:Q949R6 OMA:FEDNIDH PhylomeDB:Q9SKZ2
ProtClustDB:CLSN2917211 Genevestigator:Q9SKZ2 Uniprot:Q9SKZ2
Length = 275
Score = 304 (112.1 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 57/119 (47%), Positives = 83/119 (69%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKAN 73
I IREV+ NL SE IR ++D +P ++MDTEFPG+V RP + + +Y LK N
Sbjct: 10 IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFK-TNTEYHYETLKTN 68
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGL 132
V++L +IQ+GLT SDE+GNLP G+ + Y IW+FNF++FD+ +A DS+ELL++ G+
Sbjct: 69 VNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGI 127
Score = 141 (54.7 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 36/77 (46%), Positives = 46/77 (59%)
Query: 141 VTFHSAYDFG----FCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKH 196
V F YD FC L+GGL+++ + L VERV G HQAGSDSLLT F K+++
Sbjct: 193 VYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERV-GICHQAGSDSLLTSCTFRKLQENF 251
Query: 197 FGNEYELQKYANVLHGL 213
F E KY+ VL+GL
Sbjct: 252 FIGSME--KYSGVLYGL 266
>ZFIN|ZDB-GENE-061013-29 [details] [associations]
symbol:cnot7 "CCR4-NOT transcription complex,
subunit 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
ZFIN:ZDB-GENE-061013-29 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0003676 SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 CTD:29883 GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044
OrthoDB:EOG4MKNGS EMBL:BC124650 IPI:IPI00487012
RefSeq:NP_001070723.1 UniGene:Dr.79902 ProteinModelPortal:Q08BM8
SMR:Q08BM8 STRING:Q08BM8 Ensembl:ENSDART00000092953 GeneID:768119
KEGG:dre:768119 InParanoid:Q08BM8 OMA:VDFFEIL NextBio:20918441
ArrayExpress:Q08BM8 Bgee:Q08BM8 Uniprot:Q08BM8
Length = 286
Score = 224 (83.9 bits), Expect = 3.0e-38, Sum P(3) = 3.0e-38
Identities = 54/121 (44%), Positives = 73/121 (60%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E +RIR + ++ I+MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTSSGIQFK 124
Query: 136 K 136
K
Sbjct: 125 K 125
Score = 127 (49.8 bits), Expect = 3.0e-38, Sum P(3) = 3.0e-38
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 152 CTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNEYELQKYANVLH 211
C L GGL V + L +ER+ G HQAGSDSLLT AF K+++ F + + KY L+
Sbjct: 202 CKNLKGGLQEVAEQLELERI-GPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLY 260
Query: 212 GL 213
GL
Sbjct: 261 GL 262
Score = 85 (35.0 bits), Expect = 3.0e-38, Sum P(3) = 3.0e-38
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGF 151
ELL G+VL + V W++FHS YDFG+
Sbjct: 138 ELLMTSGVVLCEGVKWLSFHSGYDFGY 164
>WB|WBGene00000369 [details] [associations]
symbol:ccf-1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IMP] [GO:0051301 "cell division" evidence=IMP]
[GO:0000910 "cytokinesis" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0009792 GO:GO:0006915 GO:GO:0002119 GO:GO:0006355
GO:GO:0010171 GO:GO:0006351 GO:GO:0051729 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 SUPFAM:SSF53098 GO:GO:0000932
eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581 GO:GO:0043186
GeneTree:ENSGT00390000000080 EMBL:U21854 EMBL:AL132860
RefSeq:NP_499553.1 UniGene:Cel.17350 ProteinModelPortal:Q17345
SMR:Q17345 DIP:DIP-29083N MINT:MINT-1066027 STRING:Q17345
PaxDb:Q17345 EnsemblMetazoa:Y56A3A.20.1 EnsemblMetazoa:Y56A3A.20.2
GeneID:176625 KEGG:cel:CELE_Y56A3A.20 UCSC:Y56A3A.20.1 CTD:176625
WormBase:Y56A3A.20 InParanoid:Q17345 OMA:QSINHID NextBio:893354
Uniprot:Q17345
Length = 310
Score = 220 (82.5 bits), Expect = 4.0e-35, Sum P(3) = 4.0e-35
Identities = 45/119 (37%), Positives = 71/119 (59%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKAN 73
+ I V+ N+ EF RIR ++ YP ++MDTEFPGVV P R ++ NY + N
Sbjct: 21 VKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKEDF-NYQQVFCN 79
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGL 132
V++L LIQ+G + +++G LP G +W+FNF +F A + +SVE+L++ G+
Sbjct: 80 VNMLKLIQVGFAMVNDKGELPPTGD-----VWQFNF-NFSFAEDMFSHESVEMLRQAGI 132
Score = 103 (41.3 bits), Expect = 4.0e-35, Sum P(3) = 4.0e-35
Identities = 24/47 (51%), Positives = 29/47 (61%)
Query: 155 LYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNEY 201
L GGL V L V+R G HQAGSD+LLT F KIK + FG+ +
Sbjct: 220 LKGGLQEVADQLDVKRQ-GVRHQAGSDALLTAATFFKIKKQFFGDNW 265
Score = 83 (34.3 bits), Expect = 4.0e-35, Sum P(3) = 4.0e-35
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGF 151
ELL GL+ + +TW+TF S YDFG+
Sbjct: 149 ELLTTSGLITDPRITWLTFSSGYDFGY 175
>DICTYBASE|DDB_G0284217 [details] [associations]
symbol:DDB_G0284217 "CAF1 family protein"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
dictyBase:DDB_G0284217 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
EMBL:AAFI02000064 eggNOG:COG5228 KO:K12581 OMA:FEDNIDH
RefSeq:XP_638651.1 ProteinModelPortal:Q54PZ4 SMR:Q54PZ4
STRING:Q54PZ4 EnsemblProtists:DDB0237638 GeneID:8624481
KEGG:ddi:DDB_G0284217 Uniprot:Q54PZ4
Length = 367
Score = 256 (95.2 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 55/122 (45%), Positives = 75/122 (61%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I++V+ +NL E E+IR L+D Y I+MDTEFPG+V RP N R +Y L+ NVD
Sbjct: 9 IKDVWGYNLDEEMEKIRNLVDDYNYIAMDTEFPGIVTRPVGNFRSTSDY-HYQTLRLNVD 67
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
L +IQ+GLT SD EGNL W+FNFK F ++ +A DS++LL R G+
Sbjct: 68 QLKIIQLGLTFSDSEGNL-----AKPTCTWQFNFK-FSLSEDMYAQDSIDLLSRSGIEFK 121
Query: 136 KD 137
K+
Sbjct: 122 KN 123
Score = 135 (52.6 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 143 FHSAYDFGF----CTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFG 198
F YD + C L GGL + L ++R+ G HQAGSDSLLT F K++ F
Sbjct: 186 FPCIYDIKYIMKSCKNLKGGLSELADDLDIKRI-GPQHQAGSDSLLTSTTFFKMRKMFFE 244
Query: 199 NEYELQKYANVLHGL 213
N+ + KY N+L+GL
Sbjct: 245 NQLDDSKYLNILYGL 259
Score = 95 (38.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 121 LDSVELLKRQGLVLNKDVTWVTFHSAYDFGF 151
LD E L G+VLN ++ W++FHS YDFG+
Sbjct: 131 LDFGEQLMSSGIVLNDNIKWISFHSGYDFGY 161
>UNIPROTKB|Q5ZJV9 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IEA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISS]
[GO:0030014 "CCR4-NOT complex" evidence=ISS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
HSSP:P39008 OMA:FEDNIDH CTD:29883 GeneTree:ENSGT00390000000080
HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:AJ720325 IPI:IPI00570620
RefSeq:NP_001006454.1 UniGene:Gga.4905 ProteinModelPortal:Q5ZJV9
SMR:Q5ZJV9 STRING:Q5ZJV9 Ensembl:ENSGALT00000022198 GeneID:422733
KEGG:gga:422733 InParanoid:Q5ZJV9 NextBio:20825324 Uniprot:Q5ZJV9
Length = 285
Score = 229 (85.7 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 54/121 (44%), Positives = 74/121 (61%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 K 136
K
Sbjct: 125 K 125
Score = 128 (50.1 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 31/73 (42%), Positives = 41/73 (56%)
Query: 141 VTFHSAYDFGFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNE 200
V + Y C L GGL V + L +ER+ G HQAGSDSLLT AF K+++ F +
Sbjct: 191 VIYDVKYLMKSCKNLKGGLQEVAEQLELERI-GPQHQAGSDSLLTGMAFFKMREMFFEDH 249
Query: 201 YELQKYANVLHGL 213
+ KY L+GL
Sbjct: 250 IDDAKYCGHLYGL 262
Score = 85 (35.0 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGF 151
ELL G+VL + V W++FHS YDFG+
Sbjct: 138 ELLMTSGVVLCEGVKWLSFHSGYDFGY 164
>UNIPROTKB|Q3ZC01 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9913 "Bos taurus" [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
HSSP:P39008 OMA:FEDNIDH EMBL:BC103000 IPI:IPI00704902
RefSeq:NP_001029484.1 UniGene:Bt.49477 ProteinModelPortal:Q3ZC01
SMR:Q3ZC01 STRING:Q3ZC01 Ensembl:ENSBTAT00000024009 GeneID:508055
KEGG:bta:508055 CTD:29883 GeneTree:ENSGT00390000000080
HOVERGEN:HBG051044 InParanoid:Q3ZC01 OrthoDB:EOG4MKNGS
NextBio:20868336 Uniprot:Q3ZC01
Length = 285
Score = 229 (85.7 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 54/121 (44%), Positives = 74/121 (61%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 K 136
K
Sbjct: 125 K 125
Score = 128 (50.1 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 31/73 (42%), Positives = 41/73 (56%)
Query: 141 VTFHSAYDFGFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNE 200
V + Y C L GGL V + L +ER+ G HQAGSDSLLT AF K+++ F +
Sbjct: 191 VIYDVKYLMKSCKNLKGGLQEVAEQLELERI-GPQHQAGSDSLLTGMAFFKMREMFFEDH 249
Query: 201 YELQKYANVLHGL 213
+ KY L+GL
Sbjct: 250 IDDAKYCGHLYGL 262
Score = 85 (35.0 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGF 151
ELL G+VL + V W++FHS YDFG+
Sbjct: 138 ELLMTSGVVLCEGVKWLSFHSGYDFGY 164
>UNIPROTKB|E2RMU2 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0030014 KO:K12581
OMA:FEDNIDH CTD:29883 GeneTree:ENSGT00390000000080
EMBL:AAEX03010466 RefSeq:XP_540010.2 ProteinModelPortal:E2RMU2
SMR:E2RMU2 Ensembl:ENSCAFT00000011068 GeneID:482895 KEGG:cfa:482895
NextBio:20857389 Uniprot:E2RMU2
Length = 285
Score = 229 (85.7 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 54/121 (44%), Positives = 74/121 (61%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 K 136
K
Sbjct: 125 K 125
Score = 128 (50.1 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 31/73 (42%), Positives = 41/73 (56%)
Query: 141 VTFHSAYDFGFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNE 200
V + Y C L GGL V + L +ER+ G HQAGSDSLLT AF K+++ F +
Sbjct: 191 VIYDVKYLMKSCKNLKGGLQEVAEQLELERI-GPQHQAGSDSLLTGMAFFKMREMFFEDH 249
Query: 201 YELQKYANVLHGL 213
+ KY L+GL
Sbjct: 250 IDDAKYCGHLYGL 262
Score = 85 (35.0 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGF 151
ELL G+VL + V W++FHS YDFG+
Sbjct: 138 ELLMTSGVVLCEGVKWLSFHSGYDFGY 164
>UNIPROTKB|Q9UIV1 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=IDA;NAS] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IMP]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=IDA]
[GO:0035195 "gene silencing by miRNA" evidence=TAS] [GO:0007165
"signal transduction" evidence=TAS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=TAS]
[GO:0004871 "signal transducer activity" evidence=TAS] [GO:0005975
"carbohydrate metabolic process" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005829 GO:GO:0005634
EMBL:CH471080 GO:GO:0005975 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 GO:GO:0003676 GO:GO:0004871 SUPFAM:SSF53098
GO:GO:0000932 GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 OMA:FEDNIDH GO:GO:0000289 PDB:4GMJ PDBsum:4GMJ CTD:29883
HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:L46722 EMBL:AF086915
EMBL:AK021808 EMBL:AK023466 EMBL:AC091050 EMBL:BC060852
EMBL:BC070187 IPI:IPI00006552 RefSeq:NP_037486.2 RefSeq:NP_473367.2
UniGene:Hs.645009 UniGene:Hs.729775 PDB:2D5R PDBsum:2D5R
ProteinModelPortal:Q9UIV1 SMR:Q9UIV1 DIP:DIP-41902N IntAct:Q9UIV1
STRING:Q9UIV1 PhosphoSite:Q9UIV1 DMDM:41713629 PaxDb:Q9UIV1
PRIDE:Q9UIV1 DNASU:29883 Ensembl:ENST00000361272
Ensembl:ENST00000523917 GeneID:29883 KEGG:hsa:29883 UCSC:uc003wxf.1
GeneCards:GC08M017086 HGNC:HGNC:14101 MIM:604913 neXtProt:NX_Q9UIV1
PharmGKB:PA26678 InParanoid:Q9UIV1 PhylomeDB:Q9UIV1 ChiTaRS:CNOT7
EvolutionaryTrace:Q9UIV1 GenomeRNAi:29883 NextBio:52417
ArrayExpress:Q9UIV1 Bgee:Q9UIV1 CleanEx:HS_CNOT7
Genevestigator:Q9UIV1 GermOnline:ENSG00000198791 Uniprot:Q9UIV1
Length = 285
Score = 229 (85.7 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 54/121 (44%), Positives = 74/121 (61%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 K 136
K
Sbjct: 125 K 125
Score = 128 (50.1 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 31/73 (42%), Positives = 41/73 (56%)
Query: 141 VTFHSAYDFGFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNE 200
V + Y C L GGL V + L +ER+ G HQAGSDSLLT AF K+++ F +
Sbjct: 191 VIYDVKYLMKSCKNLKGGLQEVAEQLELERI-GPQHQAGSDSLLTGMAFFKMREMFFEDH 249
Query: 201 YELQKYANVLHGL 213
+ KY L+GL
Sbjct: 250 IDDAKYCGHLYGL 262
Score = 85 (35.0 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGF 151
ELL G+VL + V W++FHS YDFG+
Sbjct: 138 ELLMTSGVVLCEGVKWLSFHSGYDFGY 164
>MGI|MGI:1298230 [details] [associations]
symbol:Cnot7 "CCR4-NOT transcription complex, subunit 7"
species:10090 "Mus musculus" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IGI;IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=ISO;IPI] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IGI]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0060213 "positive
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=ISO] [GO:1900153 "positive regulation of
nuclear-transcribed mRNA catabolic process, deadenylation-dependent
decay" evidence=ISO] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 MGI:MGI:1298230 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0033962 GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 GO:GO:0004535 OMA:FEDNIDH GO:GO:0000289 CTD:29883
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
ChiTaRS:CNOT7 EMBL:U21855 EMBL:BC006021 IPI:IPI00121265
RefSeq:NP_001258471.1 RefSeq:NP_035265.1 UniGene:Mm.272551
ProteinModelPortal:Q60809 SMR:Q60809 DIP:DIP-46843N IntAct:Q60809
MINT:MINT-4597058 STRING:Q60809 PhosphoSite:Q60809 PaxDb:Q60809
PRIDE:Q60809 DNASU:18983 Ensembl:ENSMUST00000034012
Ensembl:ENSMUST00000132032 Ensembl:ENSMUST00000149992 GeneID:18983
KEGG:mmu:18983 InParanoid:Q60809 NextBio:295350 Bgee:Q60809
CleanEx:MM_CNOT7 Genevestigator:Q60809
GermOnline:ENSMUSG00000031601 GO:GO:0000290 Uniprot:Q60809
Length = 285
Score = 229 (85.7 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 54/121 (44%), Positives = 74/121 (61%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 K 136
K
Sbjct: 125 K 125
Score = 128 (50.1 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 31/73 (42%), Positives = 41/73 (56%)
Query: 141 VTFHSAYDFGFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNE 200
V + Y C L GGL V + L +ER+ G HQAGSDSLLT AF K+++ F +
Sbjct: 191 VIYDVKYLMKSCKNLKGGLQEVAEQLELERI-GPQHQAGSDSLLTGMAFFKMREMFFEDH 249
Query: 201 YELQKYANVLHGL 213
+ KY L+GL
Sbjct: 250 IDDAKYCGHLYGL 262
Score = 85 (35.0 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGF 151
ELL G+VL + V W++FHS YDFG+
Sbjct: 138 ELLMTSGVVLCEGVKWLSFHSGYDFGY 164
>ZFIN|ZDB-GENE-040426-2845 [details] [associations]
symbol:cnot8 "CCR4-NOT transcription complex,
subunit 8" species:7955 "Danio rerio" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR027212
Pfam:PF04857 ZFIN:ZDB-GENE-040426-2845 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 KO:K12581 HSSP:P39008
HOVERGEN:HBG051044 CTD:9337 PANTHER:PTHR10797:SF1 EMBL:BC055263
IPI:IPI00734891 RefSeq:NP_998644.1 UniGene:Dr.76589
ProteinModelPortal:Q7SXS5 SMR:Q7SXS5 STRING:Q7SXS5 GeneID:406788
KEGG:dre:406788 InParanoid:Q7SXS5 NextBio:20818299
ArrayExpress:Q7SXS5 Uniprot:Q7SXS5
Length = 285
Score = 231 (86.4 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 52/122 (42%), Positives = 74/122 (60%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ N+ E +IR +I Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 IICEVWASNVEEEMRKIRQIIQNYNYIAMDTEFPGVVVRPIGEFRSTVDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL ++Q+GLT +E+G+ P G+T W+FNFK F++ ++ DS++LL+ GL
Sbjct: 70 DLLKIVQLGLTFMNEDGDYPP---GTT--TWQFNFK-FNLTEDMYSQDSIDLLQNSGLQF 123
Query: 135 NK 136
K
Sbjct: 124 KK 125
Score = 125 (49.1 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 143 FHSAYDFGF----CTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFG 198
F + YD + C L GGL V L ++R+ G+ HQAGSDSLLT AF ++K+ F
Sbjct: 189 FPAIYDVKYLMKSCKNLKGGLQEVADQLELKRI-GRQHQAGSDSLLTGMAFFRMKELFFE 247
Query: 199 NEYELQKYANVLHGL 213
+ + KY L+GL
Sbjct: 248 DNIDDAKYCGRLYGL 262
Score = 90 (36.7 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGF 151
ELL GLVL ++V W++FHS YDFG+
Sbjct: 138 ELLMTSGLVLCENVKWLSFHSGYDFGY 164
>UNIPROTKB|E1BJH0 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 KO:K12581 GeneTree:ENSGT00390000000080 CTD:9337
OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:DAAA02020720 IPI:IPI00716972
RefSeq:NP_001179703.1 UniGene:Bt.103461 ProteinModelPortal:E1BJH0
SMR:E1BJH0 PRIDE:E1BJH0 Ensembl:ENSBTAT00000016027 GeneID:533443
KEGG:bta:533443 NextBio:20876038 Uniprot:E1BJH0
Length = 292
Score = 224 (83.9 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 53/122 (43%), Positives = 72/122 (59%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL GL
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLLANSGLQF 123
Query: 135 NK 136
K
Sbjct: 124 QK 125
Score = 130 (50.8 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 143 FHSAYDFGF----CTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFG 198
F S YD + C L GGL V L ++R+ G+ HQAGSDSLLT AF ++K+ F
Sbjct: 189 FPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRI-GRQHQAGSDSLLTGMAFFRMKELFFE 247
Query: 199 NEYELQKYANVLHGL 213
+ + KY L+GL
Sbjct: 248 DSIDDAKYCGRLYGL 262
Score = 86 (35.3 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 121 LDSVELLKRQGLVLNKDVTWVTFHSAYDFGF 151
L ELL G+VL +V W++FHS YDFG+
Sbjct: 134 LHFAELLMTSGVVLCDNVKWLSFHSGYDFGY 164
>UNIPROTKB|E2RID4 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 KO:K12581
GeneTree:ENSGT00390000000080 CTD:9337 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:AAEX03003072 RefSeq:XP_546280.1
ProteinModelPortal:E2RID4 SMR:E2RID4 PRIDE:E2RID4
Ensembl:ENSCAFT00000027939 GeneID:489162 KEGG:cfa:489162
NextBio:20862371 Uniprot:E2RID4
Length = 292
Score = 224 (83.9 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 53/122 (43%), Positives = 72/122 (59%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL GL
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLLANSGLQF 123
Query: 135 NK 136
K
Sbjct: 124 QK 125
Score = 130 (50.8 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 143 FHSAYDFGF----CTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFG 198
F S YD + C L GGL V L ++R+ G+ HQAGSDSLLT AF ++K+ F
Sbjct: 189 FPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRI-GRQHQAGSDSLLTGMAFFRMKELFFE 247
Query: 199 NEYELQKYANVLHGL 213
+ + KY L+GL
Sbjct: 248 DSIDDAKYCGRLYGL 262
Score = 86 (35.3 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 121 LDSVELLKRQGLVLNKDVTWVTFHSAYDFGF 151
L ELL G+VL +V W++FHS YDFG+
Sbjct: 134 LHFAELLMTSGVVLCDNVKWLSFHSGYDFGY 164
>UNIPROTKB|Q9UFF9 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IDA] [GO:0035195 "gene
silencing by miRNA" evidence=TAS] [GO:0030014 "CCR4-NOT complex"
evidence=IDA] [GO:0008285 "negative regulation of cell
proliferation" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0005622 "intracellular" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR027212
Pfam:PF04857 GO:GO:0005829 GO:GO:0005634 GO:GO:0008285
EMBL:CH471062 GO:GO:0003700 GO:GO:0006351 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0000289 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:AF053318
EMBL:AF180476 EMBL:AF087844 EMBL:AL122045 EMBL:AK025358
EMBL:AK314317 EMBL:BT006857 EMBL:BC017366 IPI:IPI00295501
PIR:T34529 PIR:T52257 RefSeq:NP_004770.4 UniGene:Hs.26703
ProteinModelPortal:Q9UFF9 SMR:Q9UFF9 DIP:DIP-29084N IntAct:Q9UFF9
MINT:MINT-155732 STRING:Q9UFF9 PhosphoSite:Q9UFF9 DMDM:15213949
PRIDE:Q9UFF9 DNASU:9337 Ensembl:ENST00000285896
Ensembl:ENST00000403027 Ensembl:ENST00000517876 GeneID:9337
KEGG:hsa:9337 UCSC:uc003lvu.3 CTD:9337 GeneCards:GC05P154218
HGNC:HGNC:9207 HPA:HPA051398 MIM:603731 neXtProt:NX_Q9UFF9
PharmGKB:PA26679 InParanoid:Q9UFF9 OMA:QPQNGLS PhylomeDB:Q9UFF9
ChiTaRS:CNOT8 GenomeRNAi:9337 NextBio:34971 ArrayExpress:Q9UFF9
Bgee:Q9UFF9 CleanEx:HS_CNOT8 Genevestigator:Q9UFF9
GermOnline:ENSG00000155508 PANTHER:PTHR10797:SF1 Uniprot:Q9UFF9
Length = 292
Score = 224 (83.9 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 53/122 (43%), Positives = 72/122 (59%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL GL
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLLANSGLQF 123
Query: 135 NK 136
K
Sbjct: 124 QK 125
Score = 130 (50.8 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 143 FHSAYDFGF----CTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFG 198
F S YD + C L GGL V L ++R+ G+ HQAGSDSLLT AF ++K+ F
Sbjct: 189 FPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRI-GRQHQAGSDSLLTGMAFFRMKELFFE 247
Query: 199 NEYELQKYANVLHGL 213
+ + KY L+GL
Sbjct: 248 DSIDDAKYCGRLYGL 262
Score = 86 (35.3 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 121 LDSVELLKRQGLVLNKDVTWVTFHSAYDFGF 151
L ELL G+VL +V W++FHS YDFG+
Sbjct: 134 LHFAELLMTSGVVLCDNVKWLSFHSGYDFGY 164
>UNIPROTKB|F2Z590 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 KO:K12581 GeneTree:ENSGT00390000000080 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:CU633659 RefSeq:XP_003134168.1
ProteinModelPortal:F2Z590 SMR:F2Z590 PRIDE:F2Z590
Ensembl:ENSSSCT00000018582 GeneID:100525087 KEGG:ssc:100525087
Uniprot:F2Z590
Length = 292
Score = 224 (83.9 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 53/122 (43%), Positives = 72/122 (59%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL GL
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLLANSGLQF 123
Query: 135 NK 136
K
Sbjct: 124 QK 125
Score = 130 (50.8 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 143 FHSAYDFGF----CTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFG 198
F S YD + C L GGL V L ++R+ G+ HQAGSDSLLT AF ++K+ F
Sbjct: 189 FPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRI-GRQHQAGSDSLLTGMAFFRMKELFFE 247
Query: 199 NEYELQKYANVLHGL 213
+ + KY L+GL
Sbjct: 248 DSIDDAKYCGRLYGL 262
Score = 86 (35.3 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 121 LDSVELLKRQGLVLNKDVTWVTFHSAYDFGF 151
L ELL G+VL +V W++FHS YDFG+
Sbjct: 134 LHFAELLMTSGVVLCDNVKWLSFHSGYDFGY 164
>MGI|MGI:1916375 [details] [associations]
symbol:Cnot8 "CCR4-NOT transcription complex, subunit 8"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=ISO] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 MGI:MGI:1916375 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0006351 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
CTD:9337 OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:AK007581
EMBL:AK075727 EMBL:AK150757 EMBL:AK153907 EMBL:BC004040
IPI:IPI00112188 RefSeq:NP_081225.1 UniGene:Mm.28910
ProteinModelPortal:Q9D8X5 SMR:Q9D8X5 STRING:Q9D8X5
PhosphoSite:Q9D8X5 PaxDb:Q9D8X5 PRIDE:Q9D8X5 DNASU:69125
Ensembl:ENSMUST00000020822 Ensembl:ENSMUST00000108843 GeneID:69125
KEGG:mmu:69125 InParanoid:Q9D8X5 NextBio:328658 Bgee:Q9D8X5
CleanEx:MM_CNOT8 Genevestigator:Q9D8X5
GermOnline:ENSMUSG00000020515 Uniprot:Q9D8X5
Length = 292
Score = 224 (83.9 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 53/122 (43%), Positives = 72/122 (59%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL GL
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLLANSGLQF 123
Query: 135 NK 136
K
Sbjct: 124 QK 125
Score = 130 (50.8 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 143 FHSAYDFGF----CTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFG 198
F S YD + C L GGL V L ++R+ G+ HQAGSDSLLT AF ++K+ F
Sbjct: 189 FPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRI-GRQHQAGSDSLLTGMAFFRMKELFFE 247
Query: 199 NEYELQKYANVLHGL 213
+ + KY L+GL
Sbjct: 248 DSIDDAKYCGRLYGL 262
Score = 86 (35.3 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 121 LDSVELLKRQGLVLNKDVTWVTFHSAYDFGF 151
L ELL G+VL +V W++FHS YDFG+
Sbjct: 134 LHFAELLMTSGVVLCDNVKWLSFHSGYDFGY 164
>DICTYBASE|DDB_G0285269 [details] [associations]
symbol:DDB_G0285269 "CAF1 family protein"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
dictyBase:DDB_G0285269 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
eggNOG:COG5228 EMBL:AAFI02000077 RefSeq:XP_638302.1
ProteinModelPortal:Q54NG7 SMR:Q54NG7 EnsemblProtists:DDB0237639
GeneID:8625019 KEGG:ddi:DDB_G0285269 OMA:GHEIREV
ProtClustDB:CLSZ2728930 Uniprot:Q54NG7
Length = 309
Score = 216 (81.1 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 51/117 (43%), Positives = 70/117 (59%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
IREV+ NL E IR L+D YP +++DTEFPG V +P ++R P NY L++NVD
Sbjct: 47 IREVWAHNLEYEMSLIRELVDIYPCVAIDTEFPGFVNKPIESMRMY-PDYNYQTLRSNVD 105
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGL 132
LL +IQ G+T SD G LP W+FNFK F + ++ ++ELLK G+
Sbjct: 106 LLKIIQFGITFSDSTGCLP-----VPTCTWQFNFK-FSLKDDMYSPYAIELLKSCGI 156
Score = 137 (53.3 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 33/80 (41%), Positives = 45/80 (56%)
Query: 137 DVTWVTFHSAYDFGF----CTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKI 192
D+ + F YD + C L GGL + + L V RV G HQAGSDSLLT F K+
Sbjct: 218 DLLRIYFPCIYDVKYLMKSCKNLKGGLSGLAEDLNVVRV-GPQHQAGSDSLLTNSTFFKL 276
Query: 193 KDKHFGNEYELQKYANVLHG 212
+++ F NE + KY +L+G
Sbjct: 277 REEFFENEIDDHKYKGILYG 296
Score = 84 (34.6 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 122 DSVELLKRQGLVLNKDVTWVTFHSAYDFGF 151
D EL G+VLN + W+ FH YDFG+
Sbjct: 170 DFSELFISSGIVLNDKIQWICFHGGYDFGY 199
>UNIPROTKB|F1NYH4 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 GeneTree:ENSGT00390000000080 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:AADN02028674 IPI:IPI00591823
Ensembl:ENSGALT00000006297 ArrayExpress:F1NYH4 Uniprot:F1NYH4
Length = 291
Score = 222 (83.2 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 53/122 (43%), Positives = 72/122 (59%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 10 VICEVWANNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 68
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL GL
Sbjct: 69 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLLASSGLQF 122
Query: 135 NK 136
K
Sbjct: 123 QK 124
Score = 129 (50.5 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 143 FHSAYDFGF----CTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFG 198
F S YD + C L GGL V L ++R+ G+ HQAGSDSLLT AF ++K+ F
Sbjct: 188 FPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRI-GRQHQAGSDSLLTGMAFFRMKELFFE 246
Query: 199 NEYELQKYANVLHGL 213
+ + KY L+GL
Sbjct: 247 DTIDDAKYCGRLYGL 261
Score = 89 (36.4 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 121 LDSVELLKRQGLVLNKDVTWVTFHSAYDFGF 151
L ELL G+VL+ V W++FHS YDFG+
Sbjct: 133 LHFAELLMTSGVVLSDSVKWLSFHSGYDFGY 163
>RGD|1306401 [details] [associations]
symbol:Cnot8 "CCR4-NOT transcription complex, subunit 8"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005622
"intracellular" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 RGD:1306401
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 EMBL:CH473948
eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
CTD:9337 OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:BC085856
IPI:IPI00198058 RefSeq:NP_001008383.1 UniGene:Rn.203142 SMR:Q5U2U9
STRING:Q5U2U9 Ensembl:ENSRNOT00000003555 GeneID:363603
KEGG:rno:363603 UCSC:RGD:1306401 InParanoid:Q5U2U9 NextBio:683758
Genevestigator:Q5U2U9 Uniprot:Q5U2U9
Length = 292
Score = 221 (82.9 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 53/122 (43%), Positives = 71/122 (58%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR + Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIRETVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL GL
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLLANSGLQF 123
Query: 135 NK 136
K
Sbjct: 124 QK 125
Score = 130 (50.8 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 143 FHSAYDFGF----CTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFG 198
F S YD + C L GGL V L ++R+ G+ HQAGSDSLLT AF ++K+ F
Sbjct: 189 FPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRI-GRQHQAGSDSLLTGMAFFRMKELFFE 247
Query: 199 NEYELQKYANVLHGL 213
+ + KY L+GL
Sbjct: 248 DSIDDAKYCGRLYGL 262
Score = 86 (35.3 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 121 LDSVELLKRQGLVLNKDVTWVTFHSAYDFGF 151
L ELL G+VL +V W++FHS YDFG+
Sbjct: 134 LHFAELLMTSGVVLCDNVKWLSFHSGYDFGY 164
>FB|FBgn0036239 [details] [associations]
symbol:Pop2 "Pop2" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007517 "muscle organ development"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0005737 GO:GO:0007095
EMBL:AE014296 GO:GO:0003676 GO:GO:0048666 GO:GO:0007517
SUPFAM:SSF53098 GO:GO:0030014 KO:K12581 GO:GO:0004535 GO:GO:0000289
OMA:SIMIREV GeneTree:ENSGT00390000000080 RefSeq:NP_001163429.1
UniGene:Dm.6800 ProteinModelPortal:E1JHY7 SMR:E1JHY7
EnsemblMetazoa:FBtr0300272 GeneID:39366 KEGG:dme:Dmel_CG5684
CTD:39366 FlyBase:FBgn0036239 PhylomeDB:E1JHY7 GenomeRNAi:39366
NextBio:813298 Bgee:E1JHY7 Uniprot:E1JHY7
Length = 357
Score = 241 (89.9 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 52/121 (42%), Positives = 75/121 (61%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
IR+V++ NL EF IR ++ +Y ++MDTEFPGVV RP R +Y L+ NVD
Sbjct: 21 IRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPVGEFRSTADY-HYQLLRCNVD 79
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT D++G P G Y W+FNFK F+++ +A DS++LL+ G+
Sbjct: 80 LLRIIQLGLTFMDDDGKTPP-G----YSTWQFNFK-FNLSEDMYAQDSIDLLQNSGIQFK 133
Query: 136 K 136
K
Sbjct: 134 K 134
Score = 109 (43.4 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 137 DVTWVTFHSAYDFGF----CTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKI 192
D+ + F + +D + C L GGL V L + RV G HQAGSD+LLT AF K+
Sbjct: 192 DLLHIYFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRV-GPQHQAGSDALLTGMAFFKM 250
Query: 193 KDKHFGNEYELQKYANVLHGLELLE 217
++ N++ + A+ + LLE
Sbjct: 251 REVQHTNDFHITPVAHDVLFRYLLE 275
>POMBASE|SPCC18.06c [details] [associations]
symbol:caf1 "CCR4-Not complex CAF1 family ribonuclease
subunit Caf1" species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISO] [GO:0030015 "CCR4-NOT core complex"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IDA]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
PomBase:SPCC18.06c GO:GO:0005829 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0071276 GO:GO:0071585
GO:GO:0003729 GO:GO:0006357 GO:GO:0006368 SUPFAM:SSF53098
eggNOG:COG5228 HOGENOM:HOG000173077 GO:GO:0004535 GO:GO:0000289
PIR:T41149 RefSeq:NP_588385.2 PDB:2P51 PDB:3G0Z PDB:3G10
PDBsum:2P51 PDBsum:3G0Z PDBsum:3G10 STRING:O74856
EnsemblFungi:SPCC18.06c.1 GeneID:2539041 OrthoDB:EOG4MGWHH
EvolutionaryTrace:O74856 NextBio:20800215 GO:GO:0030015
Uniprot:O74856
Length = 335
Score = 253 (94.1 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 58/121 (47%), Positives = 76/121 (62%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
IR+V+ NL E I +LI+RYP++SMDTEFPGVV RP + D +Y L+ANVD
Sbjct: 25 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDY-HYQTLRANVD 83
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
L +IQIGL LSDEEGN P T W+FNF F++ +A +S+ELL + G+
Sbjct: 84 SLKIIQIGLALSDEEGNAPV--EACT---WQFNFT-FNLQDDMYAPESIELLTKSGIDFK 137
Query: 136 K 136
K
Sbjct: 138 K 138
Score = 101 (40.6 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 122 DSVELLKRQGLVLNKDVTWVTFHSAYDFGF 151
D ELL GLVL ++VTW+TFHS YDF +
Sbjct: 148 DFAELLIGSGLVLQEEVTWITFHSGYDFAY 177
Score = 96 (38.9 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 158 GLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNEYELQKYANVLHGL 213
GL + L + R+ G HQAGSD+LLT F +I+ ++F + + N L+GL
Sbjct: 221 GLQDIADDLQIHRI-GPQHQAGSDALLTARIFFEIRSRYFDGSID-SRMLNQLYGL 274
>SGD|S000005335 [details] [associations]
symbol:POP2 "RNase of the DEDD superfamily" species:4932
"Saccharomyces cerevisiae" [GO:0043332 "mating projection tip"
evidence=IDA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IDA;IPI]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IGI;IDA;IMP]
[GO:0030015 "CCR4-NOT core complex" evidence=IPI] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IPI] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IMP;IDA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IMP] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 SGD:S000005335 GO:GO:0005634
GO:GO:0043332 GO:GO:0046872 EMBL:BK006947 GO:GO:0003723
GO:GO:0006368 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0032968
EMBL:M88607 eggNOG:COG5228 KO:K12581 GO:GO:0004535 GO:GO:0000289
OrthoDB:EOG4MGWHH GO:GO:0030015 PDB:4B8C PDBsum:4B8C GO:GO:0000175
GeneTree:ENSGT00390000000080 RefSeq:NP_014457.3 GeneID:855796
KEGG:sce:YNR059W PDB:4B8A PDBsum:4B8A EMBL:D12807 EMBL:D12808
EMBL:Z71667 EMBL:AY692792 PIR:S63383 RefSeq:NP_014450.3 PDB:1UOC
PDBsum:1UOC ProteinModelPortal:P39008 SMR:P39008 DIP:DIP-1957N
IntAct:P39008 MINT:MINT-405477 STRING:P39008 PaxDb:P39008
EnsemblFungi:YNR052C GeneID:855788 KEGG:sce:YNR052C CYGD:YNR052c
HOGENOM:HOG000057134 OMA:PRFSIFT EvolutionaryTrace:P39008
NextBio:980271 Genevestigator:P39008 GermOnline:YNR052C
Uniprot:P39008
Length = 433
Score = 232 (86.7 bits), Expect = 6.9e-30, Sum P(3) = 6.9e-30
Identities = 52/123 (42%), Positives = 77/123 (62%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKAN 73
+ +R+V++ NL SEF IR L+ +Y +S+ TEF G + RP R + +Y ++AN
Sbjct: 158 LFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDY-HYQTMRAN 216
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLV 133
VD LN IQ+GL+LSD GN PD G ST W+FNF +FD + + +S+ELL++ G+
Sbjct: 217 VDFLNPIQLGLSLSDANGNKPDNGP-ST---WQFNF-EFDPKKEIMSTESLELLRKSGIN 271
Query: 134 LNK 136
K
Sbjct: 272 FEK 274
Score = 89 (36.4 bits), Expect = 6.9e-30, Sum P(3) = 6.9e-30
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGF 151
+LL GL+++ VTW+T+H+AYD GF
Sbjct: 287 QLLMDSGLMMDDSVTWITYHAAYDLGF 313
Score = 50 (22.7 bits), Expect = 6.9e-30, Sum P(3) = 6.9e-30
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 179 GSDSLLTLHAFLKIK--DKH-FGNEYELQKYANVLHGLE 214
G SLL L +F ++ H F N + KY V++G++
Sbjct: 392 GGQSLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGID 430
>UNIPROTKB|G4MUF8 [details] [associations]
symbol:MGG_01666 "CCR4-NOT transcription complex subunit 7"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 EMBL:CM001232 KO:K12581
RefSeq:XP_003714652.1 ProteinModelPortal:G4MUF8
EnsemblFungi:MGG_01666T0 GeneID:2679608 KEGG:mgr:MGG_01666
Uniprot:G4MUF8
Length = 521
Score = 198 (74.8 bits), Expect = 2.5e-29, Sum P(3) = 2.5e-29
Identities = 46/87 (52%), Positives = 58/87 (66%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRH-RDPAANYNGLKANV 74
IREV++ NL E +R LI+RY ISMDT FPGVV RP + R RD +Y L+ANV
Sbjct: 126 IREVWKHNLHEEMAVLRDLIERYSYISMDTTFPGVVCRPMGSFRSKRD--YHYQCLRANV 183
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGST 101
D+LN+IQIG+TL +E+G P ST
Sbjct: 184 DMLNVIQIGITLFNEDGENPPARPNST 210
Score = 93 (37.8 bits), Expect = 2.5e-29, Sum P(3) = 2.5e-29
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 159 LDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNE 200
L+ + + L V+R G +HQAGSDSLLT AF ++++K FG +
Sbjct: 369 LETLAEVLKVKRT-GPAHQAGSDSLLTGRAFFQMREKVFGGK 409
Score = 84 (34.6 bits), Expect = 2.5e-29, Sum P(3) = 2.5e-29
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 126 LLKRQGLVLNKDVTWVTFHSAYDFGF 151
L+ G+V ++ ++W++FHSAYDFG+
Sbjct: 277 LMISSGMVCDESISWISFHSAYDFGY 302
Score = 50 (22.7 bits), Expect = 8.1e-26, Sum P(3) = 8.1e-26
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 99 GSTYYIWEFNFKDFDIARHAHALDSVELLKRQGL 132
G Y W+FNF+ F + ++ +E L + G+
Sbjct: 227 GPLPYTWQFNFQ-FSLKDDMYSQSQIESLLQAGI 259
>UNIPROTKB|F1SET4 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
OMA:FEDNIDH GeneTree:ENSGT00390000000080 EMBL:CU467504
ProteinModelPortal:F1SET4 SMR:F1SET4 Ensembl:ENSSSCT00000007651
Uniprot:F1SET4
Length = 246
Score = 229 (85.7 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 54/121 (44%), Positives = 74/121 (61%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 K 136
K
Sbjct: 125 K 125
Score = 94 (38.1 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 141 VTFHSAYDFGFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAF 189
V + Y C L GGL V + L +ER+ G HQAGSDSLLT +A+
Sbjct: 191 VIYDVKYLMKSCKNLKGGLQEVAEQLELERI-GPQHQAGSDSLLTGNAY 238
Score = 85 (35.0 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGF 151
ELL G+VL + V W++FHS YDFG+
Sbjct: 138 ELLMTSGVVLCEGVKWLSFHSGYDFGY 164
>UNIPROTKB|F2Z5J3 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IEA] [GO:0030014 "CCR4-NOT
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0030014
GeneTree:ENSGT00390000000080 EMBL:CU467504
Ensembl:ENSSSCT00000007648 Uniprot:F2Z5J3
Length = 248
Score = 229 (85.7 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 54/121 (44%), Positives = 74/121 (61%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 K 136
K
Sbjct: 125 K 125
Score = 85 (35.0 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGF 151
ELL G+VL + V W++FHS YDFG+
Sbjct: 138 ELLMTSGVVLCEGVKWLSFHSGYDFGY 164
>RGD|1305313 [details] [associations]
symbol:Cnot7 "CCR4-NOT transcription complex, subunit 7"
species:10116 "Rattus norvegicus" [GO:0000289 "nuclear-transcribed
mRNA poly(A) tail shortening" evidence=ISO] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0030014
"CCR4-NOT complex" evidence=ISO] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISO]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 RGD:1305313
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 IPI:IPI00764402
ProteinModelPortal:D3ZE83 SMR:D3ZE83 Ensembl:ENSRNOT00000059020
ArrayExpress:D3ZE83 Uniprot:D3ZE83
Length = 248
Score = 229 (85.7 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 54/121 (44%), Positives = 74/121 (61%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 K 136
K
Sbjct: 125 K 125
Score = 85 (35.0 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGF 151
ELL G+VL + V W++FHS YDFG+
Sbjct: 138 ELLMTSGVVLCEGVKWLSFHSGYDFGY 164
>UNIPROTKB|B7Z8R1 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HOGENOM:HOG000173077
HOVERGEN:HBG051044 UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 EMBL:AK303775 IPI:IPI00980211
SMR:B7Z8R1 Ensembl:ENST00000519404 UCSC:uc011ddj.2 Uniprot:B7Z8R1
Length = 238
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 76/203 (37%), Positives = 109/203 (53%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P G + + ++FN +D L L + +
Sbjct: 70 DLLKIIQLGLTFTNEKGEYPS-GINTWQFNFKFNLTGYDFGYMVKLLTDSRLPEEEHEFF 128
Query: 135 NKDVTWVTFHSAYDFGF----CTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFL 190
+ + + F S YD + C L GGL V L ++R+ G+ HQAGSDSLLT AF
Sbjct: 129 H--ILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRI-GRQHQAGSDSLLTGMAFF 185
Query: 191 KIKDKHFGNEYELQKYANVLHGL 213
++K+ F + + KY L+GL
Sbjct: 186 RMKELFFEDSIDDAKYCGRLYGL 208
>UNIPROTKB|E5RIL2 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00982993
ProteinModelPortal:E5RIL2 SMR:E5RIL2 Ensembl:ENST00000518775
ArrayExpress:E5RIL2 Bgee:E5RIL2 Uniprot:E5RIL2
Length = 225
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 76/203 (37%), Positives = 109/203 (53%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P G + + ++FN +D L L + +
Sbjct: 70 DLLKIIQLGLTFTNEKGEYPS-GINTWQFNFKFNLTGYDFGYMVKLLTDSRLPEEEHEFF 128
Query: 135 NKDVTWVTFHSAYDFGF----CTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFL 190
+ + + F S YD + C L GGL V L ++R+ G+ HQAGSDSLLT AF
Sbjct: 129 H--ILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRI-GRQHQAGSDSLLTGMAFF 185
Query: 191 KIKDKHFGNEYELQKYANVLHGL 213
++K+ F + + KY L+GL
Sbjct: 186 RMKELFFEDSIDDAKYCGRLYGL 208
>ASPGD|ASPL0000066297 [details] [associations]
symbol:caf1 species:162425 "Emericella nidulans"
[GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IMP] [GO:0033962 "cytoplasmic
mRNA processing body assembly" evidence=IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0071585 "detoxification of cadmium ion"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0071276 "cellular response to cadmium
ion" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0003676 EMBL:BN001304
SUPFAM:SSF53098 EnsemblFungi:CADANIAT00000746 OMA:RIRDVWK
Uniprot:C8VBX7
Length = 466
Score = 212 (79.7 bits), Expect = 4.1e-25, Sum P(2) = 4.1e-25
Identities = 49/129 (37%), Positives = 75/129 (58%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
IR+V++ NL E +R L++RYP ISMDTEFPG+V RP + ++ +Y L+ NVD
Sbjct: 138 IRDVWKHNLAQEMAVLRHLVERYPYISMDTEFPGIVARPIGSFTNKADY-HYQTLRCNVD 196
Query: 76 LLNLIQIGLTLSDEEGNLPD----------LGSG--STYYIWEFNFKDFDIARHAHALDS 123
LL +IQ+G+TL +G +P LG+G W+FNF+ F + +A +S
Sbjct: 197 LLKMIQLGITLFSPKGEVPPPDATDANGQPLGNGLVPAPCTWQFNFR-FSLEEDMYAQES 255
Query: 124 VELLKRQGL 132
+L + G+
Sbjct: 256 TAMLAKAGI 264
Score = 102 (41.0 bits), Expect = 4.1e-25, Sum P(2) = 4.1e-25
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 158 GLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNEYELQKYANVLHGL 213
GL + LGV+RV G +HQAGSDSL+T F K++ F + + KY+ + GL
Sbjct: 372 GLQDIADELGVKRV-GIAHQAGSDSLVTGEIFWKMRQLVFNGKIDDSKYSGQIWGL 426
Score = 95 (38.5 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 113 DIARHA-HALDSVE---LLKRQGLVLNKDVTWVTFHSAYDFGF 151
D A H + +D +E LL GLVL DV W++FHS YDFG+
Sbjct: 265 DFATHEKNGIDPLEFGALLISSGLVLLDDVHWISFHSGYDFGY 307
>UNIPROTKB|H0YAV9 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC091050 HGNC:HGNC:14101
ChiTaRS:CNOT7 Ensembl:ENST00000519918 Uniprot:H0YAV9
Length = 208
Score = 214 (80.4 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 49/110 (44%), Positives = 68/110 (61%)
Query: 27 EFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTL 86
E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVDLL +IQ+GLT
Sbjct: 3 EMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVDLLKIIQLGLTF 61
Query: 87 SDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLNK 136
+E+G P G+ ST W+FNFK F++ +A DS+ELL G+ K
Sbjct: 62 MNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFKK 105
Score = 85 (35.0 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 125 ELLKRQGLVLNKDVTWVTFHSAYDFGF 151
ELL G+VL + V W++FHS YDFG+
Sbjct: 118 ELLMTSGVVLCEGVKWLSFHSGYDFGY 144
>UNIPROTKB|E5RGH2 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0045944 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 EMBL:AC091050 HGNC:HGNC:14101 ChiTaRS:CNOT7
IPI:IPI01010295 ProteinModelPortal:E5RGH2 SMR:E5RGH2
Ensembl:ENST00000524358 UCSC:uc003wxi.1 ArrayExpress:E5RGH2
Bgee:E5RGH2 Uniprot:E5RGH2
Length = 147
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 54/121 (44%), Positives = 74/121 (61%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRS-NADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLN 135
LL +IQ+GLT +E+G P G+ ST W+FNFK F++ +A DS+ELL G+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPP-GT-ST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 K 136
K
Sbjct: 125 K 125
>UNIPROTKB|E5RGE4 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00981605
ProteinModelPortal:E5RGE4 SMR:E5RGE4 Ensembl:ENST00000520472
ArrayExpress:E5RGE4 Bgee:E5RGE4 Uniprot:E5RGE4
Length = 133
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 53/122 (43%), Positives = 72/122 (59%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVL 134
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL GL
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLLANSGLQF 123
Query: 135 NK 136
K
Sbjct: 124 QK 125
>UNIPROTKB|E5RJC5 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00984192
ProteinModelPortal:E5RJC5 SMR:E5RJC5 Ensembl:ENST00000519211
ArrayExpress:E5RJC5 Bgee:E5RJC5 Uniprot:E5RJC5
Length = 119
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 50/113 (44%), Positives = 69/113 (61%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELL 127
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLL 116
>UNIPROTKB|E5RK92 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00979467
ProteinModelPortal:E5RK92 SMR:E5RK92 Ensembl:ENST00000517568
ArrayExpress:E5RK92 Bgee:E5RK92 Uniprot:E5RK92
Length = 118
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 50/113 (44%), Positives = 69/113 (61%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELL 127
DLL +IQ+GLT ++E+G P SG W+FNFK F++ ++ DS++LL
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK-FNLTEDMYSQDSIDLL 116
>UNIPROTKB|E5RHL9 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00976222
ProteinModelPortal:E5RHL9 SMR:E5RHL9 Ensembl:ENST00000522644
ArrayExpress:E5RHL9 Bgee:E5RHL9 Uniprot:E5RHL9
Length = 117
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 45/96 (46%), Positives = 58/96 (60%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFK 110
DLL +IQ+GLT ++E+G P SG W+FNFK
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK 100
>UNIPROTKB|E5RHP3 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00977360
ProteinModelPortal:E5RHP3 SMR:E5RHP3 Ensembl:ENST00000522458
ArrayExpress:E5RHP3 Bgee:E5RHP3 Uniprot:E5RHP3
Length = 121
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 45/96 (46%), Positives = 58/96 (60%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFK 110
DLL +IQ+GLT ++E+G P SG W+FNFK
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP---SGIN--TWQFNFK 100
>TAIR|locus:2009220 [details] [associations]
symbol:AT1G06450 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 EMBL:AC007592
GO:GO:0090305 SUPFAM:SSF53098 EMBL:AK118108 EMBL:BT005529
IPI:IPI00537229 PIR:D86200 RefSeq:NP_172133.1 UniGene:At.24926
UniGene:At.66805 ProteinModelPortal:Q9SHJ0 SMR:Q9SHJ0 IntAct:Q9SHJ0
DNASU:837157 EnsemblPlants:AT1G06450.1 GeneID:837157
KEGG:ath:AT1G06450 TAIR:At1g06450 eggNOG:COG5228
HOGENOM:HOG000173077 InParanoid:Q9SHJ0 KO:K12581 OMA:DEEMARM
PhylomeDB:Q9SHJ0 ProtClustDB:CLSN2914145 Genevestigator:Q9SHJ0
GO:GO:0004535 Uniprot:Q9SHJ0
Length = 360
Score = 162 (62.1 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 45/125 (36%), Positives = 68/125 (54%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRP--DSNIRHRDPAANYNGLKA 72
L R V+ N+ E R+ + R+P+I+ DTE+PG++ R DS+ D Y +K
Sbjct: 8 LARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSS---SDEC--YRAMKG 62
Query: 73 NVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDF-DIARHAHALDSVELLKRQG 131
NV+ LIQ G TL + +G ++G +WE NF +F D + + L S+E L+R G
Sbjct: 63 NVENTKLIQCGFTLFNAKG---EIGG-----VWEINFSNFGDPSDTRNEL-SIEFLRRHG 113
Query: 132 LVLNK 136
L L K
Sbjct: 114 LDLQK 118
Score = 49 (22.3 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 136 KDVTWVTFHSAYDFGF 151
K V +VTF AYDF +
Sbjct: 143 KHVEFVTFQGAYDFAY 158
>UNIPROTKB|B0AZS3 [details] [associations]
symbol:CNOT8 "cDNA FLJ50580, highly similar to CCR4-NOT
transcription complex subunit 8" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 HOGENOM:HOG000173077 HOVERGEN:HBG051044
OrthoDB:EOG4MKNGS UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 EMBL:AK315864 EMBL:AK297381
EMBL:AK316221 EMBL:AK316269 IPI:IPI00976721 SMR:B0AZS3
STRING:B0AZS3 Ensembl:ENST00000520671 Ensembl:ENST00000521450
Ensembl:ENST00000521583 Ensembl:ENST00000523698 Uniprot:B0AZS3
Length = 186
Score = 130 (50.8 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 143 FHSAYDFGF----CTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFG 198
F S YD + C L GGL V L ++R+ G+ HQAGSDSLLT AF ++K+ F
Sbjct: 83 FPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRI-GRQHQAGSDSLLTGMAFFRMKELFFE 141
Query: 199 NEYELQKYANVLHGL 213
+ + KY L+GL
Sbjct: 142 DSIDDAKYCGRLYGL 156
Score = 86 (35.3 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 121 LDSVELLKRQGLVLNKDVTWVTFHSAYDFGF 151
L ELL G+VL +V W++FHS YDFG+
Sbjct: 28 LHFAELLMTSGVVLCDNVKWLSFHSGYDFGY 58
Score = 36 (17.7 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 119 HALDSVELLKRQGLVLNK 136
++ DS++LL GL K
Sbjct: 2 YSQDSIDLLANSGLQFQK 19
>UNIPROTKB|E5RFJ4 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00984764
ProteinModelPortal:E5RFJ4 SMR:E5RFJ4 Ensembl:ENST00000519394
ArrayExpress:E5RFJ4 Bgee:E5RFJ4 Uniprot:E5RFJ4
Length = 90
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANV 74
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NV
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY-QYQLLRCNV 69
Query: 75 DLLNLIQIGLTLSDEEGNLP 94
DLL +IQ+GLT ++E+G P
Sbjct: 70 DLLKIIQLGLTFTNEKGEYP 89
>TAIR|locus:2197669 [details] [associations]
symbol:AT1G61470 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 ProtClustDB:CLSN2679330 EMBL:AC004255 IPI:IPI00518166
PIR:H96639 RefSeq:NP_176342.1 UniGene:At.51196 HSSP:O95453
ProteinModelPortal:O64773 SMR:O64773 PRIDE:O64773 DNASU:842441
EnsemblPlants:AT1G61470.1 GeneID:842441 KEGG:ath:AT1G61470
TAIR:At1g61470 InParanoid:O64773 OMA:GVSARIC PhylomeDB:O64773
Genevestigator:O64773 Uniprot:O64773
Length = 278
Score = 132 (51.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 41/119 (34%), Positives = 59/119 (49%)
Query: 18 EVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLL 77
EV+ +N +E IR + I++DTEFPG + ++ + D Y +K NVD
Sbjct: 4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCL--KETPMDASDEI-RYRDMKFNVDNT 60
Query: 78 NLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLNK 136
+LIQ+GLTL G G T WE N DF+ ++ S+ LK GL L+K
Sbjct: 61 HLIQLGLTL---------FGKGITK-TWEINLSDFNESKSLKNDKSIAFLKNNGLDLDK 109
Score = 85 (35.0 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 150 GFCTCLYG--GLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKI 192
G C+ L GL R+ L + RV GK+H AGSDS LT F K+
Sbjct: 185 GLCSGLSSRFGLQRIADVLQMRRV-GKAHHAGSDSELTARVFTKL 228
>TAIR|locus:2010414 [details] [associations]
symbol:AT1G27890 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 EMBL:AC069471 GO:GO:0003723
EMBL:AC079280 GO:GO:0090305 SUPFAM:SSF53098 eggNOG:COG5228
HOGENOM:HOG000173077 KO:K12581 GO:GO:0004535 HSSP:P39008
ProtClustDB:CLSN2679330 IPI:IPI00532627 PIR:B86404
RefSeq:NP_174110.1 UniGene:At.66896 ProteinModelPortal:Q9C6M9
SMR:Q9C6M9 DNASU:839682 EnsemblPlants:AT1G27890.1 GeneID:839682
KEGG:ath:AT1G27890 TAIR:At1g27890 InParanoid:Q9C6M9 OMA:EFHETVE
PhylomeDB:Q9C6M9 Genevestigator:Q9C6M9 Uniprot:Q9C6M9
Length = 302
Score = 127 (49.8 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 38/119 (31%), Positives = 54/119 (45%)
Query: 18 EVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLL 77
EV+ +N E + IR + + I++DTEFPG + + Y +K NVD
Sbjct: 3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEE---IRYRDMKFNVDNT 59
Query: 78 NLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLNK 136
+LIQ+G TL D G WE N DF+ + S+ LK GL L+K
Sbjct: 60 HLIQLGFTLFDRRGITKT---------WEINLSDFNEHKCFKNDKSIAFLKSNGLNLDK 109
Score = 82 (33.9 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 158 GLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKI 192
GL R+ L ++RV GK+H AGSDS LT F K+
Sbjct: 196 GLQRIADVLQMKRV-GKAHHAGSDSELTARVFTKL 229
>TAIR|locus:2029826 [details] [associations]
symbol:AT1G27820 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 EMBL:AC012375
EMBL:AC079280 GO:GO:0090305 SUPFAM:SSF53098 eggNOG:COG5228
HOGENOM:HOG000173077 KO:K12581 GO:GO:0004535 HSSP:P39008
IPI:IPI00519263 PIR:C86403 RefSeq:NP_174103.1 UniGene:At.51794
ProteinModelPortal:Q9SFX6 SMR:Q9SFX6 PRIDE:Q9SFX6 DNASU:839676
EnsemblPlants:AT1G27820.1 GeneID:839676 KEGG:ath:AT1G27820
TAIR:At1g27820 InParanoid:Q9SFX6 OMA:DDLLYQQ PhylomeDB:Q9SFX6
ProtClustDB:CLSN2679330 Genevestigator:Q9SFX6 Uniprot:Q9SFX6
Length = 310
Score = 127 (49.8 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 40/119 (33%), Positives = 53/119 (44%)
Query: 18 EVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLL 77
EV+ +N E IR + I++DTEFPG + + Y +K NVD
Sbjct: 8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEE---IRYRDMKFNVDNT 64
Query: 78 NLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLNK 136
+LIQ+G TL D G T WE N DFD + S+ LK GL L+K
Sbjct: 65 HLIQLGFTLFDRRG------FAKT---WEINLSDFDEHKCFKNDKSIAFLKSNGLNLDK 114
Score = 82 (33.9 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 158 GLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKI 192
GL R+ L ++RV GK+H AGSDS LT F K+
Sbjct: 201 GLQRIADVLQMKRV-GKAHHAGSDSELTARVFTKL 234
>UNIPROTKB|B7Z9U0 [details] [associations]
symbol:CNOT8 "cDNA, FLJ78954, highly similar to CCR4-NOT
transcription complex subunit 8" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 HOGENOM:HOG000173077 HOVERGEN:HBG051044
UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8 PANTHER:PTHR10797:SF1
EMBL:AC112169 EMBL:AK316055 IPI:IPI00982113 SMR:B7Z9U0
STRING:B7Z9U0 Ensembl:ENST00000524105 UCSC:uc011ddh.2
Uniprot:B7Z9U0
Length = 128
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 143 FHSAYDFGF----CTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFG 198
F S YD + C L GGL V L ++R+ G+ HQAGSDSLLT AF ++K+ F
Sbjct: 25 FPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRI-GRQHQAGSDSLLTGMAFFRMKELFFE 83
Query: 199 NEYELQKYANVLHGL 213
+ + KY L+GL
Sbjct: 84 DSIDDAKYCGRLYGL 98
>CGD|CAL0001422 [details] [associations]
symbol:POP2 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0000289 "nuclear-transcribed
mRNA poly(A) tail shortening" evidence=IEA;ISM] [GO:0030015
"CCR4-NOT core complex" evidence=IEA;ISM] [GO:0009272 "fungal-type
cell wall biogenesis" evidence=IMP] [GO:0055091 "phospholipid
homeostasis" evidence=IMP] [GO:0009405 "pathogenesis" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0043332 "mating
projection tip" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0071216 "cellular response to biotic stimulus"
evidence=IMP] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 CGD:CAL0001422
GO:GO:0005634 GO:GO:0071216 GO:GO:0036180 GO:GO:0009405
GO:GO:0042493 GO:GO:0003676 GO:GO:0055091 GO:GO:0009267
GO:GO:0009272 SUPFAM:SSF53098 GO:GO:0036170 EMBL:AACQ01000046
EMBL:AACQ01000047 eggNOG:COG5228 KO:K12581 RefSeq:XP_718005.1
RefSeq:XP_718072.1 ProteinModelPortal:Q5A8L5 STRING:Q5A8L5
GeneID:3640301 GeneID:3640332 KEGG:cal:CaO19.13156
KEGG:cal:CaO19.5734 Uniprot:Q5A8L5
Length = 492
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 38/116 (32%), Positives = 62/116 (53%)
Query: 15 LIREVFEFNLISEFERIRALI-DRYP--IISMDTEFPGVVVRPDSNIRHRDPAANYNGLK 71
+I+EV+ NL EF+ +R I D+ I++ E PG+V RP + ++ L+
Sbjct: 153 IIKEVWSSNLEHEFQALRTFINDKTSKVFIAIHQEIPGIVARPVGTFKSSSDY-HFQTLR 211
Query: 72 ANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELL 127
AN DLLNLIQ+ L + N + ST IW+FNF +D+ + + + + +L
Sbjct: 212 ANSDLLNLIQLSLCVIKISKN----ETISTPVIWQFNFL-YDLTKEMYNEEHLAML 262
>UNIPROTKB|Q5A8L5 [details] [associations]
symbol:POP2 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Pop2p" species:237561 "Candida albicans SC5314"
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0009272 "fungal-type cell wall biogenesis" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0042493 "response to drug" evidence=IMP] [GO:0055091
"phospholipid homeostasis" evidence=IMP] [GO:0071216 "cellular
response to biotic stimulus" evidence=IMP] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 CGD:CAL0001422 GO:GO:0005634
GO:GO:0071216 GO:GO:0036180 GO:GO:0009405 GO:GO:0042493
GO:GO:0003676 GO:GO:0055091 GO:GO:0009267 GO:GO:0009272
SUPFAM:SSF53098 GO:GO:0036170 EMBL:AACQ01000046 EMBL:AACQ01000047
eggNOG:COG5228 KO:K12581 RefSeq:XP_718005.1 RefSeq:XP_718072.1
ProteinModelPortal:Q5A8L5 STRING:Q5A8L5 GeneID:3640301
GeneID:3640332 KEGG:cal:CaO19.13156 KEGG:cal:CaO19.5734
Uniprot:Q5A8L5
Length = 492
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 38/116 (32%), Positives = 62/116 (53%)
Query: 15 LIREVFEFNLISEFERIRALI-DRYP--IISMDTEFPGVVVRPDSNIRHRDPAANYNGLK 71
+I+EV+ NL EF+ +R I D+ I++ E PG+V RP + ++ L+
Sbjct: 153 IIKEVWSSNLEHEFQALRTFINDKTSKVFIAIHQEIPGIVARPVGTFKSSSDY-HFQTLR 211
Query: 72 ANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELL 127
AN DLLNLIQ+ L + N + ST IW+FNF +D+ + + + + +L
Sbjct: 212 ANSDLLNLIQLSLCVIKISKN----ETISTPVIWQFNFL-YDLTKEMYNEEHLAML 262
>UNIPROTKB|E5RHG0 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00981542 SMR:E5RHG0
Ensembl:ENST00000518028 Ensembl:ENST00000519430 Uniprot:E5RHG0
Length = 55
Score = 107 (42.7 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIR 59
+I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFR 55
>TAIR|locus:2095705 [details] [associations]
symbol:AT3G44240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 ProtClustDB:CLSN2679330 EMBL:AL353865 IPI:IPI00548745
PIR:T49140 RefSeq:NP_190010.1 UniGene:At.53726
ProteinModelPortal:Q9LXM4 SMR:Q9LXM4 PRIDE:Q9LXM4 DNASU:823549
EnsemblPlants:AT3G44240.1 GeneID:823549 KEGG:ath:AT3G44240
TAIR:At3g44240 InParanoid:Q9LXM4 OMA:DINGRIG PhylomeDB:Q9LXM4
Genevestigator:Q9LXM4 Uniprot:Q9LXM4
Length = 239
Score = 120 (47.3 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 53/183 (28%), Positives = 78/183 (42%)
Query: 38 YPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLG 97
Y I++DTEFP + +H Y + +VD LIQ+GLTL D G +
Sbjct: 11 YRFIAIDTEFPSTL---RETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRI---- 63
Query: 98 SGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGLVLNKDVTWVTFHSAYDFGFCTCLYG 157
G T WE NF DF + A S+E L+R GL L K + GF + ++
Sbjct: 64 -GGT---WEINFSDFGVD-DARNEKSIEFLRRNGLDLRK----IREEGIRIEGFFSEMFW 114
Query: 158 GLDRVCKALGVERVVGKSHQA----G--SDSL-LTLHAFLKIKDKHFGNEYELQKYANVL 210
L + + + G A G ++L +T F K + G+ Y+L+ A
Sbjct: 115 MLKKTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRC 174
Query: 211 HGL 213
GL
Sbjct: 175 EGL 177
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.142 0.428 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 218 210 0.00080 112 3 11 22 0.47 32
31 0.48 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 50
No. of states in DFA: 603 (64 KB)
Total size of DFA: 179 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.87u 0.11s 17.98t Elapsed: 00:00:00
Total cpu time: 17.88u 0.11s 17.99t Elapsed: 00:00:00
Start: Sat May 11 11:26:47 2013 End: Sat May 11 11:26:47 2013