Query 027829
Match_columns 218
No_of_seqs 142 out of 366
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 18:15:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027829.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2196-2200//hhsearch_pdb/027829hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gmj_B CCR4-NOT transcription 1.0 1 1 488.2 17.3 204 5-216 1-265 (285)
2 2p51_A SPCC18.06C protein; DED 1.0 1 1 480.0 17.9 203 5-216 12-275 (333)
3 1uoc_A POP2; hydrolase, DEDD n 1.0 1 1 478.5 15.9 206 4-216 4-288 (289)
4 2d5r_A CCR4-NOT transcription 1.0 1 1 470.3 16.8 191 15-213 1-252 (252)
5 3d45_A Poly(A)-specific ribonu 1.0 1 1 294.7 12.2 109 16-131 2-122 (507)
6 2a1r_A Poly(A)-specific ribonu 1.0 1 1 214.4 7.8 106 18-131 2-120 (430)
7 3v9w_A Ribonuclease T; DEDD nu 1.0 1 1 45.9 9.6 139 26-197 25-222 (235)
8 2f96_A Ribonuclease T; RNAse, 1.0 1 1 40.0 10.7 133 31-197 22-214 (224)
9 2xri_A ERI1 exoribonuclease 3; 1.0 1 1 38.3 12.4 125 39-196 32-214 (224)
10 2p1j_A POLIII, DNA polymerase 1.0 1 1 38.0 9.9 125 35-196 9-176 (186)
No 1
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=488.22 Aligned_cols=204 Identities=45% Similarity=0.744 Sum_probs=193.2
Q ss_pred CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf 99999999851887164568999999998651299389941235201068999989994202387863001211023232
Q 027829 5 PPPQPPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGL 84 (218)
Q Consensus 5 ~~~~~~~~~~~IreVwa~Nle~E~~~I~~li~~~~yIAiDtEFPGvv~~p~g~~~~~~~~~~Y~~lk~NVd~l~iIQlGi 84 (218)
||+++.....+|||||++||++||+.||++|++||||||||||||++++|.+.+++++ |+||+++|+|||.+++||+||
T Consensus 1 ~p~~~~~~~~~IreVw~~Nl~ee~~~I~~~i~~~~fVAiDtEFpGvv~rp~~~~~~t~-d~~Y~~lr~nvd~l~iIQlGL 79 (285)
T 4gmj_B 1 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNA-DYQYQLLRCNVDLLKIIQLGL 79 (285)
T ss_dssp ---------CCEEEECHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCTTCCTTST-THHHHHHHHHHTTSCCCEEEE
T ss_pred CCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCH-HHHHHHHHHHHHHHCCEEEEE
T ss_conf 9977578998499802568999999999998539989998770673578887667999-999999998887523215888
Q ss_pred EEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHCC------------------------CCCCCCEEE
Q ss_conf 34168899889999997004898322224466777566899998629------------------------302587018
Q 027829 85 TLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQG------------------------LVLNKDVTW 140 (218)
Q Consensus 85 tl~~~~G~~p~~~~~~~~~~WqFNF~~Fd~~~d~~~~~Si~lL~~~G------------------------lv~~~~v~W 140 (218)
|+++++|+.|.. +++|||||+ |++++|+|+++||+||+++| ++++++++|
T Consensus 80 t~f~~~g~~p~~-----~~~wqFNF~-f~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~W 153 (285)
T 4gmj_B 80 TFMNEQGEYPPG-----TSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKW 153 (285)
T ss_dssp EEECTTSCCCSS-----CCEEEEEBC-CCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEE
T ss_pred EEECCCCCCCCC-----EEEEEEEEE-ECCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf 762157876887-----347778888-46600245678899999869778899873998899999999868876378725
Q ss_pred EEECCCCCCC-------------------------------------CCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 9500443100-------------------------------------146546768889978196223799998535799
Q 027829 141 VTFHSAYDFG-------------------------------------FCTCLYGGLDRVCKALGVERVVGKSHQAGSDSL 183 (218)
Q Consensus 141 vtFhg~yDfg-------------------------------------~~~~l~ggL~~vA~~L~v~r~~g~~hqAGsdsl 183 (218)
|||||+|||| .|++++|||++||+.|+|+| +|++||||||||
T Consensus 154 vtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l~ggL~~lA~~L~v~r-~g~~HqAGsDSl 232 (285)
T 4gmj_B 154 LSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSL 232 (285)
T ss_dssp EESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTCCSCHHHHHHHTTCCC-CSCTTSHHHHHH
T ss_pred EEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC-CCCCCCCHHHHH
T ss_conf 8724526599999998389899879999999999785551489999766566873999998679987-788876436999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCC
Q ss_conf 999999999975079920000003237426988
Q 027829 184 LTLHAFLKIKDKHFGNEYELQKYANVLHGLELL 216 (218)
Q Consensus 184 lt~~~F~kl~~~~f~~~~~~~~~~g~l~Gl~~~ 216 (218)
||++||+||++++|++.++..+|+|+||||+..
T Consensus 233 lT~~~F~kl~~~~f~~~~~~~~~~g~l~Glg~~ 265 (285)
T 4gmj_B 233 LTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSG 265 (285)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHTTCCTTSSTT
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHCCEEECCCCC
T ss_conf 999999999999716886247758787564899
No 2
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=1.00 E-value=1 Score=480.00 Aligned_cols=203 Identities=44% Similarity=0.709 Sum_probs=189.7
Q ss_pred CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE
Q ss_conf 99999999851887164568999999998651299389941235201068999989994202387863001211023232
Q 027829 5 PPPQPPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGL 84 (218)
Q Consensus 5 ~~~~~~~~~~~IreVwa~Nle~E~~~I~~li~~~~yIAiDtEFPGvv~~p~g~~~~~~~~~~Y~~lk~NVd~l~iIQlGi 84 (218)
+.|.+....+.|||||++||++||+.||++|++|+||||||||||++++|.|.|+++. |+|||++|+|||.+++|||||
T Consensus 12 ~~~~~~~~~~~IreVw~~Nleee~~~Ir~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~-e~~Yq~lR~NVd~l~iIQlGL 90 (333)
T 2p51_A 12 GVDGISSQISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSD-DYHYQTLRANVDSLKIIQIGL 90 (333)
T ss_dssp ------CCSCSEEEECTTTHHHHHHHHHHHTTTSCEEEEEEECCCCCCCCCSCCSSSH-HHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCH-HHHHHHHHHHHHHCCCEEEEE
T ss_conf 4698877876799801757999999999999649889996550541246665668998-999999997553265048999
Q ss_pred EEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHCC------------------------CCCCCCEEE
Q ss_conf 34168899889999997004898322224466777566899998629------------------------302587018
Q 027829 85 TLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQG------------------------LVLNKDVTW 140 (218)
Q Consensus 85 tl~~~~G~~p~~~~~~~~~~WqFNF~~Fd~~~d~~~~~Si~lL~~~G------------------------lv~~~~v~W 140 (218)
|+++++|++|.. +++|||||+ |++.+|||+++||+||+++| ||++++|+|
T Consensus 91 t~fd~~G~~p~~-----~~twqFNF~-F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~W 164 (333)
T 2p51_A 91 ALSDEEGNAPVE-----ACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTW 164 (333)
T ss_dssp EEECTTSCCCTT-----CSEEEEEBC-CCTTTSCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEE
T ss_pred EEECCCCCCCCC-----CEEEEEEEE-ECCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEE
T ss_conf 987368987998-----513899879-77722333789999999859986679873998899999998568511788439
Q ss_pred EEECCCCCCC-------------------------------------CCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 9500443100-------------------------------------146546768889978196223799998535799
Q 027829 141 VTFHSAYDFG-------------------------------------FCTCLYGGLDRVCKALGVERVVGKSHQAGSDSL 183 (218)
Q Consensus 141 vtFhg~yDfg-------------------------------------~~~~l~ggL~~vA~~L~v~r~~g~~hqAGsdsl 183 (218)
|+|||+|||| .|.+++|||++||+.|+|+| +|.+|||||||+
T Consensus 165 itfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP~iYD~K~l~~~~~~l~ggL~~lA~~L~v~R-ig~~HqAGsDSl 243 (333)
T 2p51_A 165 ITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHR-IGPQHQAGSDAL 243 (333)
T ss_dssp EESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSSSEEEHHHHHTTTTCCCCCHHHHHHHTTCCC-CSCTTSHHHHHH
T ss_pred EEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCC-CCCCHHHHHHHH
T ss_conf 9835614599999996487788889999999998786141499999974133677999999749974-471201341789
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCC
Q ss_conf 999999999975079920000003237426988
Q 027829 184 LTLHAFLKIKDKHFGNEYELQKYANVLHGLELL 216 (218)
Q Consensus 184 lt~~~F~kl~~~~f~~~~~~~~~~g~l~Gl~~~ 216 (218)
||++||+||++.+|++. +.++++|+||||+..
T Consensus 244 LT~~~F~kl~~~~f~~~-~~~~~~g~l~Gl~~~ 275 (333)
T 2p51_A 244 LTARIFFEIRSRYFDGS-IDSRMLNQLYGLGST 275 (333)
T ss_dssp HHHHHHHHHHHHHHTTS-CCGGGTTCCTTC---
T ss_pred HHHHHHHHHHHHHCCCC-CHHHHCCEEECCCCC
T ss_conf 99999999999866998-636519778565767
No 3
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=1.00 E-value=1 Score=478.47 Aligned_cols=206 Identities=37% Similarity=0.662 Sum_probs=186.8
Q ss_pred CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEE
Q ss_conf 99999999985188716456899999999865129938994123520106899998999420238786300121102323
Q 027829 4 VPPPQPPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIG 83 (218)
Q Consensus 4 ~~~~~~~~~~~~IreVwa~Nle~E~~~I~~li~~~~yIAiDtEFPGvv~~p~g~~~~~~~~~~Y~~lk~NVd~l~iIQlG 83 (218)
++.+.|++..+.|||||++||++||+.||++|++||||||||||||++++|.+.+++++ |+||+++|+|||.+++||+|
T Consensus 4 ~~~~~p~~~~~~i~eVw~~Nl~~e~~~I~~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~-d~~Yq~lr~nVd~l~iIQlG 82 (289)
T 1uoc_A 4 PPIFLPPPNYLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKV-DYHYQTMRANVDFLNPIQLG 82 (289)
T ss_dssp CCCCCCCGGGGCCEEECTTTHHHHHHHHHHHTTTSCEEEEEEEEEC----------CHH-HHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCEEEEEEEECCEECCCCCCCCCCH-HHHHHHHHHHHHHCCCEEEE
T ss_conf 87788998886799820645999999999998649879997562652136776668999-99999999866526612898
Q ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHCC------------------------CCCCCCEE
Q ss_conf 234168899889999997004898322224466777566899998629------------------------30258701
Q 027829 84 LTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQG------------------------LVLNKDVT 139 (218)
Q Consensus 84 itl~~~~G~~p~~~~~~~~~~WqFNF~~Fd~~~d~~~~~Si~lL~~~G------------------------lv~~~~v~ 139 (218)
||+++++|++|.. .+++|||||+ ||+.+|||+++||+||+++| ||++++|+
T Consensus 83 Lt~~~~~g~~p~~----~~~~wqFNF~-F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~ 157 (289)
T 1uoc_A 83 LSLSDANGNKPDN----GPSTWQFNFE-FDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVT 157 (289)
T ss_dssp EEEECTTCCCCSS----SCSEEEEEBC-CCTTCCCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSE
T ss_pred EEEECCCCCCCCC----CCCEEEEEEE-ECCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCE
T ss_conf 8987368986888----8402899988-7783223367899999985988667987399899999999856875478830
Q ss_pred EEEECCCCCCC-------------------------------------CCCCCCC---------------CHHHHHHHHC
Q ss_conf 89500443100-------------------------------------1465467---------------6888997819
Q 027829 140 WVTFHSAYDFG-------------------------------------FCTCLYG---------------GLDRVCKALG 167 (218)
Q Consensus 140 WvtFhg~yDfg-------------------------------------~~~~l~g---------------gL~~vA~~L~ 167 (218)
||||||+|||| +|.+++| ||++||+.|+
T Consensus 158 Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~ 237 (289)
T 1uoc_A 158 WITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELG 237 (289)
T ss_dssp EEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTT
T ss_pred EEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 89706841478999985266678678999999998686324699999987740476544320001566789999999759
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCCC
Q ss_conf 6223799998535799999999999975079---920000003237426988
Q 027829 168 VERVVGKSHQAGSDSLLTLHAFLKIKDKHFG---NEYELQKYANVLHGLELL 216 (218)
Q Consensus 168 v~r~~g~~hqAGsdsllt~~~F~kl~~~~f~---~~~~~~~~~g~l~Gl~~~ 216 (218)
|+| +|.+||||||||||++||+||++.+|. +..+.++|+|+||||+.+
T Consensus 238 v~r-~g~~HqAGsDSllT~~~F~kl~~~~~~~~~~~~~~~~~~g~l~Gl~~~ 288 (289)
T 1uoc_A 238 LPR-FSIFTTTGGQSLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGIDGD 288 (289)
T ss_dssp CCC-CGGGGSHHHHHHHHHHHHHHHHHHTTTBCTTSCBGGGGTTCSSCCTTC
T ss_pred CCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCEEECCCCC
T ss_conf 985-475436177899999999999999866503789868729878476778
No 4
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=1.00 E-value=1 Score=470.29 Aligned_cols=191 Identities=47% Similarity=0.806 Sum_probs=182.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCC
Q ss_conf 18871645689999999986512993899412352010689999899942023878630012110232323416889988
Q 027829 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLP 94 (218)
Q Consensus 15 ~IreVwa~Nle~E~~~I~~li~~~~yIAiDtEFPGvv~~p~g~~~~~~~~~~Y~~lk~NVd~l~iIQlGitl~~~~G~~p 94 (218)
+|||||++||++||+.|+++|++||||||||||||++++|.|.+++++ |+|||++|+|||.+++||+|||+++++|++|
T Consensus 1 ~i~eVw~~Nl~~e~~~I~~~i~~~~fvAmDtEFpGvv~rp~g~f~~~~-~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p 79 (252)
T 2d5r_A 1 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNA-DYQYQLLRCNVDLLKIIQLGLTFMNEQGEYP 79 (252)
T ss_dssp CEEEECGGGHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCSCCSSHH-HHHHHHHHHHHTTCCCCEEEEEEECTTSCCC
T ss_pred CEEEEHHHHHHHHHHHHHHHHHHCCEEEEEEEECCEECCCCCCCCCCH-HHHHHHHHHHHHHCCEEEEEEEEECCCCCCC
T ss_conf 969860656999999999999649989997562541036677778998-9999999974542650589999982689879
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHCC------------------------CCCCCCEEEEEECCCCCCC
Q ss_conf 9999997004898322224466777566899998629------------------------3025870189500443100
Q 027829 95 DLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQG------------------------LVLNKDVTWVTFHSAYDFG 150 (218)
Q Consensus 95 ~~~~~~~~~~WqFNF~~Fd~~~d~~~~~Si~lL~~~G------------------------lv~~~~v~WvtFhg~yDfg 150 (218)
.. +++|||||+ |++.+|||+++||+||+++| ||++++|+||||||+||||
T Consensus 80 ~~-----~~~wqFNF~-F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg~yDf~ 153 (252)
T 2d5r_A 80 PG-----TSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFG 153 (252)
T ss_dssp SS-----CCEEEEEBC-CCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHH
T ss_pred CC-----CEEEEEEEE-ECCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCHHH
T ss_conf 87-----613899778-777334337899999998699866798659999999999983685207984089945730299
Q ss_pred -------------------------------------CCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf -------------------------------------1465467688899781962237999985357999999999999
Q 027829 151 -------------------------------------FCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 193 (218)
Q Consensus 151 -------------------------------------~~~~l~ggL~~vA~~L~v~r~~g~~hqAGsdsllt~~~F~kl~ 193 (218)
.|.+++|||++||+.|+|+| +|++|||||||+||++||+||+
T Consensus 154 yL~k~L~~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~gL~~la~~L~v~r-~g~~HqAGsDsllT~~~F~km~ 232 (252)
T 2d5r_A 154 YLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMR 232 (252)
T ss_dssp HHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTTCCSSHHHHHHHHTCCC-CSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999986387788789999999998786231289999871156877999998759975-6722000206899999999999
Q ss_pred HHHCCCCCCCCCCCCEEECC
Q ss_conf 75079920000003237426
Q 027829 194 DKHFGNEYELQKYANVLHGL 213 (218)
Q Consensus 194 ~~~f~~~~~~~~~~g~l~Gl 213 (218)
+.+|++.++.++|+|+||||
T Consensus 233 ~~~f~~~~~~~~~~g~l~gl 252 (252)
T 2d5r_A 233 EMFFEDHIDDAKYCGHLYGL 252 (252)
T ss_dssp HHTSCSSCCHHHHTTBCTTC
T ss_pred HHHCCCCCCHHHCCCEECCC
T ss_conf 98668988778738872087
No 5
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=1.00 E-value=1 Score=294.73 Aligned_cols=109 Identities=21% Similarity=0.262 Sum_probs=98.9
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCC----CCCCCCCCCHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 887164568999999998651299389941235201068999----9899942023878630012110232323416889
Q 027829 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSN----IRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEG 91 (218)
Q Consensus 16 IreVwa~Nle~E~~~I~~li~~~~yIAiDtEFPGvv~~p~g~----~~~~~~~~~Y~~lk~NVd~l~iIQlGitl~~~~G 91 (218)
|+|||++||++||+.|+++|++|+||||||||||++.+|.+. +..++ +++|+++|+|||.+++||+|||+|+++|
T Consensus 2 ~m~V~~~Nf~~~l~~i~~~i~~~~fvaiD~Ef~Gi~~~~~~~~~~~~~~t~-~~~Y~~~r~~v~~~~iiQlGlt~f~~~~ 80 (507)
T 3d45_A 2 PMEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTP-EERYQKLKKHSMDFLLFQFGLCAFKYDH 80 (507)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCC--------CBSCCH-HHHHHHHHHHHTTBCEEEEEEEEEEECS
T ss_pred CEEEEHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 758707769999999999971399899900426767787765433446999-9999999987875240218999873179
Q ss_pred CCCCCCCCCCCEEEEEEEEEECC-----CCC---CCCHHHHHHHHHCC
Q ss_conf 98899999970048983222244-----667---77566899998629
Q 027829 92 NLPDLGSGSTYYIWEFNFKDFDI-----ARH---AHALDSVELLKRQG 131 (218)
Q Consensus 92 ~~p~~~~~~~~~~WqFNF~~Fd~-----~~d---~~~~~Si~lL~~~G 131 (218)
+.+ .+++|||||+.|+. ..| +|+++||+||+++|
T Consensus 81 ~~~------~~~~~~fNf~~fp~~~~~~~~d~~~~~~~~Si~fL~~~G 122 (507)
T 3d45_A 81 TDS------KHVTKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQG 122 (507)
T ss_dssp SSS------CEEEEEEEEEBCCCCCSSSSCCCEEEEEHHHHHHHHTTT
T ss_pred CCC------CEEEEEEEEEECCCCCCCCCCCCCEEECHHHHHHHHHCC
T ss_conf 988------515886789846743234676413354387899999859
No 6
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=1.00 E-value=1 Score=214.44 Aligned_cols=106 Identities=24% Similarity=0.359 Sum_probs=95.9
Q ss_pred EECCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCC-----CCCCCCCCCCHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 716456899999999865129938994123520106899-----998999420238786300121102323234168899
Q 027829 18 EVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDS-----NIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGN 92 (218)
Q Consensus 18 eVwa~Nle~E~~~I~~li~~~~yIAiDtEFPGvv~~p~g-----~~~~~~~~~~Y~~lk~NVd~l~iIQlGitl~~~~G~ 92 (218)
|||++|+.+.++.|+++|++|+||||||||||++++|.+ .++ ++ ++||+++|+|||.+++||+|||+|+++|+
T Consensus 2 ~V~r~nf~~~l~~i~~~i~~~~fVAiD~Ef~Gi~~~~~~~~~~~~~~-s~-e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~ 79 (430)
T 2a1r_A 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFD-TP-EERYQKLKKHSMDFLLFQFGLCTFKYDYT 79 (430)
T ss_dssp EECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCSSSCC-----CCC-CH-HHHHHHHHHHTTTBCEEEEEEEEEEEETT
T ss_pred CEEHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCC-CH-HHHHHHHHHHHHHCCEEEEEEEEEEECCC
T ss_conf 13298899999999998721997999665166267876312256679-99-99999999877634400587788740688
Q ss_pred CCCCCCCCCCEEEEEEEEEE----CC----CCCCCCHHHHHHHHHCC
Q ss_conf 88999999700489832222----44----66777566899998629
Q 027829 93 LPDLGSGSTYYIWEFNFKDF----DI----ARHAHALDSVELLKRQG 131 (218)
Q Consensus 93 ~p~~~~~~~~~~WqFNF~~F----d~----~~d~~~~~Si~lL~~~G 131 (218)
.+ .+++|||||+.| +. +.++|+++||+||+++|
T Consensus 80 ~~------~~~~~~fNF~~FP~~~~~~~~~~~~~~~~~Si~fL~~~G 120 (430)
T 2a1r_A 80 DS------KYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG 120 (430)
T ss_dssp TT------EEEEEEEEEEBCCCCSSSSSCCCEEEEEHHHHHHHHHTT
T ss_pred CC------CEEEEEEEEEECCCCCCCCCCCHHHHCCHHHHHHHHHCC
T ss_conf 78------525898898852664465666432310587899999859
No 7
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=1.00 E-value=1 Score=45.92 Aligned_cols=139 Identities=15% Similarity=0.191 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEC--CCCCCCCCCCCCCCE
Q ss_conf 999999986512993899412352010689999899942023878630012110232323416--889988999999700
Q 027829 26 SEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSD--EEGNLPDLGSGSTYY 103 (218)
Q Consensus 26 ~E~~~I~~li~~~~yIAiDtEFPGvv~~p~g~~~~~~~~~~Y~~lk~NVd~l~iIQlGitl~~--~~G~~p~~~~~~~~~ 103 (218)
+++..+..-+....||++|+|.+|.- | . .-.|||+|+...+ ++|+.. .
T Consensus 25 ~~~~~l~~~l~~~~~vviD~ETTGl~--~---------~-----------~~~IieIgav~~~~~~~g~i~--------~ 74 (235)
T 3v9w_A 25 AQLTGLCDRFRGFYPVVIDVETAGFN--A---------K-----------TDALLEIAAITLKMDEQGWLM--------P 74 (235)
T ss_dssp ----CHHHHTTTEEEEEEEEEESSSC--T---------T-----------TBCEEEEEEEEEEECTTSCEE--------E
T ss_pred CCCCCCHHCCCCCCEEEEEEECCCCC--C---------C-----------CCEEEEEEEEEEEECCCCCCC--------C
T ss_conf 22257001146882899997689999--9---------9-----------986899988998875898441--------2
Q ss_pred EEEEEEEEECCCC-CCCCHH-------------------------HHHHHHHCCCCC---CCCEEEEEECCCCCCCCCC-
Q ss_conf 4898322224466-777566-------------------------899998629302---5870189500443100146-
Q 027829 104 IWEFNFKDFDIAR-HAHALD-------------------------SVELLKRQGLVL---NKDVTWVTFHSAYDFGFCT- 153 (218)
Q Consensus 104 ~WqFNF~~Fd~~~-d~~~~~-------------------------Si~lL~~~Glv~---~~~v~WvtFhg~yDfg~~~- 153 (218)
.-.|+.. ..... ....+. -.++|.+. +- .++..+|++.+.||+.+..
T Consensus 75 ~~~f~~~-v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~~~~vl~~~~~~l~~~--~~~~~~~~~~lVahN~~fD~~~L~~ 151 (235)
T 3v9w_A 75 DTTLHFH-VEPFVGANLQPEALAFNGIDPNDPDRGAVSGYEALHEIFKVVRKG--IKASGCNRAIMVAHNANFDHSFMMA 151 (235)
T ss_dssp EEEEEEE-BCCCTTCBCCHHHHHHHCCCTTCGGGCCBCHHHHHHHHHHHHHHH--HTTTTCCEEEEEETTTHHHHHHHHH
T ss_pred CCEEEEE-ECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHH--HHHCCCCCCEEEEECHHHHHHHHHH
T ss_conf 5158999-898889998979999869988899745999899999999999997--5301577867999586999999999
Q ss_pred -----C--------------------C--CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf -----5--------------------4--676888997819622379999853579999999999997507
Q 027829 154 -----C--------------------L--YGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHF 197 (218)
Q Consensus 154 -----~--------------------l--~ggL~~vA~~L~v~r~~g~~hqAGsdsllt~~~F~kl~~~~f 197 (218)
+ + .-+|..+++.+|++...+..|.|.+|+..|+++|.+|.+++.
T Consensus 152 ~~~~~g~~~~p~~~~~~~Dt~~la~~~~p~~~L~~l~~~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~ 222 (235)
T 3v9w_A 152 AAERASLKRNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWK 222 (235)
T ss_dssp HHHHTTCCCCCEEEEEEEEHHHHHHHHHSCCSHHHHHHHHTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCEEEHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99983998788878868874999998828788999999869998998784869999999999999999998
No 8
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=1.00 E-value=1 Score=39.99 Aligned_cols=133 Identities=21% Similarity=0.238 Sum_probs=81.4
Q ss_pred HHHHHHCCCEEEEECCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEECC--CCCCCCCCCCCCCEEEEEE
Q ss_conf 99865129938994123520106899998999420238786300121102323234168--8998899999970048983
Q 027829 31 IRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDE--EGNLPDLGSGSTYYIWEFN 108 (218)
Q Consensus 31 I~~li~~~~yIAiDtEFPGvv~~p~g~~~~~~~~~~Y~~lk~NVd~l~iIQlGitl~~~--~G~~p~~~~~~~~~~WqFN 108 (218)
+.+-+.+..||++|+|.+|.- + . .-.|||+|+...+. +|+.. ..-.|+
T Consensus 22 ~~~~~~~~~~vviD~ETTGl~----------~-~-----------~~~IieIg~v~~~~~~~g~i~--------~~~~f~ 71 (224)
T 2f96_A 22 MARRFRGYLPVVVDVETGGFN----------S-A-----------TDALLEIAATTVGMDEKGFLF--------PEHTYF 71 (224)
T ss_dssp HHHHTTTEEEEEEEEEESSSC----------T-T-----------TBCEEEEEEEEEEECTTSCEE--------EEEEEE
T ss_pred HHCCCCCCCEEEEEEECCCCC----------C-C-----------CCEEEEEEEEEEEECCCCCCC--------CCCEEE
T ss_conf 431356882899986688989----------9-9-----------980699988998874888541--------366178
Q ss_pred EEEECCC-CCCCCHHH-------------------------HHHHHHCCCCC---CCCEEEEEECCCCCCCCCC------
Q ss_conf 2222446-67775668-------------------------99998629302---5870189500443100146------
Q 027829 109 FKDFDIA-RHAHALDS-------------------------VELLKRQGLVL---NKDVTWVTFHSAYDFGFCT------ 153 (218)
Q Consensus 109 F~~Fd~~-~d~~~~~S-------------------------i~lL~~~Glv~---~~~v~WvtFhg~yDfg~~~------ 153 (218)
.. .... .....+.. .++|++. +. .++...|++.+.+|+.+..
T Consensus 72 ~l-V~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~~~v~~~~~~~l~~~--~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~ 148 (224)
T 2f96_A 72 FR-IEPFEGANIEPAALEFTGIKLDHPLRMAVQEEAALTEIFRGIRKA--LKANGCKRAILVGHNSSFDLGFLNAAVART 148 (224)
T ss_dssp EE-BCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHHHHHHHHHHHHHH--HHHTTCSEEEEEETTHHHHHHHHHHHHHHH
T ss_pred EE-ECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHH--HHHCCCCCCEEEEECHHHHHHHHHHHHHHC
T ss_conf 99-888889988989998859897899762998799999999999998--642156787799837166199999999980
Q ss_pred C--------------------C--CCCHHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 5--------------------4--676888997819622379-999853579999999999997507
Q 027829 154 C--------------------L--YGGLDRVCKALGVERVVG-KSHQAGSDSLLTLHAFLKIKDKHF 197 (218)
Q Consensus 154 ~--------------------l--~ggL~~vA~~L~v~r~~g-~~hqAGsdsllt~~~F~kl~~~~f 197 (218)
+ + .-+|..+++.+|++. .+ ..|-|-.|++.|.++|.+|.+.+-
T Consensus 149 g~~~~p~~~~~~iDt~~l~~~~~~~~~L~~l~~~~gi~~-~~~~~H~Al~Da~~ta~l~~~l~~~~~ 214 (224)
T 2f96_A 149 GIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGMEF-DNREAHSARYDTEKTAELFCGIVNRWK 214 (224)
T ss_dssp TCCCCCEEEEEEEEHHHHHHHHHSCCSHHHHHHHTTCCC-CTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEHHHHHHHHCCCCCHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 997677644656368999999858999999999839986-888787708999999999999999999
No 9
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=1.00 E-value=1 Score=38.26 Aligned_cols=125 Identities=15% Similarity=0.170 Sum_probs=81.2
Q ss_pred CEEEEECCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEECCC-CCCCCCCCCCCCEEEEEEEEEECCCCC
Q ss_conf 9389941235201068999989994202387863001211023232341688-998899999970048983222244667
Q 027829 39 PIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEE-GNLPDLGSGSTYYIWEFNFKDFDIARH 117 (218)
Q Consensus 39 ~yIAiDtEFPGvv~~p~g~~~~~~~~~~Y~~lk~NVd~l~iIQlGitl~~~~-G~~p~~~~~~~~~~WqFNF~~Fd~~~d 117 (218)
.||.+|+|.+|.-.. -|.-.|||+|....+.. |+ ..-+|+.. .+....
T Consensus 32 ~~vviD~ETTGl~~~--------------------~d~~~IieIgav~v~~~~~~----------i~~~f~~l-V~P~~~ 80 (224)
T 2xri_A 32 YFLVLDFEATCDKPQ--------------------IHPQEIIEFPILKLNGRTME----------IESTFHMY-VQPVVH 80 (224)
T ss_dssp EEEEECCEECCCC-C--------------------CSSCCEEEEEEEEEETTTCC----------EEEEEEEE-CCCSSS
T ss_pred EEEEEEEECCCCCCC--------------------CCCCCEEEEEEEEEECCCCE----------EEEEEEEE-ECCCCC
T ss_conf 699999872789998--------------------89763489989999668857----------82124337-789999
Q ss_pred -CCC------------------------HHHHHHHHHCCCCC-CCCEEEEEECCCCCCCC-CC-----------------
Q ss_conf -775------------------------66899998629302-58701895004431001-46-----------------
Q 027829 118 -AHA------------------------LDSVELLKRQGLVL-NKDVTWVTFHSAYDFGF-CT----------------- 153 (218)
Q Consensus 118 -~~~------------------------~~Si~lL~~~Glv~-~~~v~WvtFhg~yDfg~-~~----------------- 153 (218)
..+ ++-.+++....+|- |....|++. |.+|+++ ..
T Consensus 81 ~~i~~~~~~ltGIt~~~v~~a~~~~~v~~~f~~~l~~~~lv~hn~~~~~~t~-g~fD~~fll~~~~~~~g~~~p~~~~~~ 159 (224)
T 2xri_A 81 PQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTC-GDWDLKVMLPGQCQYLGLPVADYFKQW 159 (224)
T ss_dssp CSCCHHHHHHHCCCHHHHTTCCCHHHHHHHHHHHHHHTTTTSTTSCEEEEES-SSHHHHTHHHHHHHHHTCCCCGGGSCE
T ss_pred CCCCHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEE-CHHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 9679889988586999980899889999999999964666567876699970-756499999999998399984020021
Q ss_pred -----------CC--CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf -----------54--67688899781962237999985357999999999999750
Q 027829 154 -----------CL--YGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKH 196 (218)
Q Consensus 154 -----------~l--~ggL~~vA~~L~v~r~~g~~hqAGsdsllt~~~F~kl~~~~ 196 (218)
.+ ..+|..+++.+|++. .|.+|.|-.|++.|+++|.+|.++.
T Consensus 160 iD~~~~~~~~~~~~p~~~L~~l~~~~gi~~-~~~~H~Al~DA~~ta~l~~~l~~~g 214 (224)
T 2xri_A 160 INLKKAYSFAMGCWPKNGLLDMNKGLSLQH-IGRPHSGIDDCKNIANIMKTLAYRG 214 (224)
T ss_dssp EEHHHHHHHHHTSCCTTTHHHHHHHTTCCC-CSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred EEHHHHHHHHHCCCCCCCHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 759999999966588878999999769998-8987386999999999999998769
No 10
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=1.00 E-value=1 Score=37.96 Aligned_cols=125 Identities=23% Similarity=0.338 Sum_probs=76.9
Q ss_pred HHCCCEEEEECCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEECC
Q ss_conf 51299389941235201068999989994202387863001211023232341688998899999970048983222244
Q 027829 35 IDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDI 114 (218)
Q Consensus 35 i~~~~yIAiDtEFPGvv~~p~g~~~~~~~~~~Y~~lk~NVd~l~iIQlGitl~~~~G~~p~~~~~~~~~~WqFNF~~Fd~ 114 (218)
+...+||++|+|.+|.- | .. -.|||+|....+ +|+ ..-.|+.. ...
T Consensus 9 l~~~~~v~iD~ETTGl~--~---------~~-----------~~IieIg~v~~~-~g~----------i~~~f~~l-v~P 54 (186)
T 2p1j_A 9 FGDATFVVLDFETTGLD--P---------QV-----------DEIIEIGAVKIQ-GGQ----------IVDEYHTL-IKP 54 (186)
T ss_dssp ----CEEEEEEEESCSC--T---------TT-----------CCEEEEEEEEEE-TTE----------EEEEEEEE-CBC
T ss_pred CCCCCEEEEEEECCCCC--C---------CC-----------CEEEEEEEEEEE-CCE----------EEEEEEEE-ECC
T ss_conf 76798999997889989--9---------88-----------807999999998-999----------97998978-895
Q ss_pred CCCCCCHHHHH-------HHHHCC---------CCCCCCEEEEEECCCCCCCCC--------------------------
Q ss_conf 66777566899-------998629---------302587018950044310014--------------------------
Q 027829 115 ARHAHALDSVE-------LLKRQG---------LVLNKDVTWVTFHSAYDFGFC-------------------------- 152 (218)
Q Consensus 115 ~~d~~~~~Si~-------lL~~~G---------lv~~~~v~WvtFhg~yDfg~~-------------------------- 152 (218)
... .++...+ .|+..- +-.-.+-..|++.+.+|+.+.
T Consensus 55 ~~~-i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~~l~~~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~ 133 (186)
T 2p1j_A 55 SRE-ISRKSSEITGITQEMLENKRSIEEVLPEFLGFLEDSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSL 133 (186)
T ss_dssp SSC-CCHHHHHHHCCCHHHHTTCCBHHHHHHHHHHHSSSCEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHH
T ss_pred CCC-CCHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHH
T ss_conf 998-9977865439799999669989999999999978998999794999999999999839998778787399999998
Q ss_pred -CCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf -65467688899781962237999985357999999999999750
Q 027829 153 -TCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKH 196 (218)
Q Consensus 153 -~~l~ggL~~vA~~L~v~r~~g~~hqAGsdsllt~~~F~kl~~~~ 196 (218)
..-..+|..+++.+|++. .+ .|.|-.|++.|+++|.+|.+..
T Consensus 134 ~~~~~~~L~~l~~~~gi~~-~~-~H~Al~Da~~t~~l~~~l~~~~ 176 (186)
T 2p1j_A 134 LKLRSYSLDSVVEKLGLGP-FR-HHRALDDARVTAQVFLRFVEMM 176 (186)
T ss_dssp TCCSCCSHHHHHHHTTCCS-TT-CCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCHHHHHHHCCCCC-CC-CCCHHHHHHHHHHHHHHHHHHH
T ss_conf 3269999999999859799-99-8587999999999999999887
Done!