BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027830
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE 87
+ ++ +D + L AG+KLVV+DF++ CG CK + PK+ +L++ DV FL+V+ +
Sbjct: 1 MVYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVD 60
Query: 88 EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN 121
E + + + +P F F + ++ S S N
Sbjct: 61 ECEDIAQDNQIACMPTFLFMKNGQ-KLDSLSGAN 93
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
+S +GDKLVVVDFF+ CG CK + P I + AE D F +++ +E + V
Sbjct: 19 DSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVS 78
Query: 100 VLPFFRFYRG 109
+P FY+G
Sbjct: 79 SMPTLIFYKG 88
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
+S +GDKLVVVDFF+ CG CK + P I + AE D F +++ +E + V
Sbjct: 12 DSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVS 71
Query: 100 VLPFFRFYRG 109
+P FY+G
Sbjct: 72 SMPTLIFYKG 81
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
E+L AGDKLVVVDF + CG CK + P L+E +V FL+V+ ++ + + V
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
P F+F++ +V FS N
Sbjct: 73 ATPTFQFFKKGQ-KVGEFSGAN 93
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 32 LGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS 91
L DL + + +L+VVDFF+ CG C+ + PK+ LA+ P+V+F +V+ ++++
Sbjct: 4 LATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEE 63
Query: 92 MCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
+V +P F F + V FS N T K ++ + +H
Sbjct: 64 AAAKYSVTAMPTFVFIKDGK-EVDRFSGANET--KLRETITRH 103
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN-YEEHKSMCYSLNVHVLPF 103
AGDK VV+D F+ CG CKA+ PK +LAE DV FL+++ +E+K++ L + V+P
Sbjct: 23 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPT 82
Query: 104 FRFYR 108
F+ +
Sbjct: 83 FKILK 87
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
E+L AGDKLVVVDF + CG CK + P L+E +V FL+V+ ++ + + V
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASEXEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
+P F+F++ +V FS N
Sbjct: 73 CMPTFQFFKKGQ-KVGEFSGAN 93
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN-YEEHKSMCYSLNVHVLPF 103
AGDK VV+D F+ CG CKA+ PK +LAE DV FL+++ +E+K++ L + V+P
Sbjct: 35 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPT 94
Query: 104 FRFYR 108
F+ +
Sbjct: 95 FKILK 99
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
E+L AGDKLVVVDF + CG CK + P L+E +V FL+V+ ++ + + V
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
+P F+F++ +V FS N
Sbjct: 73 SMPTFQFFKKGQ-KVGEFSGAN 93
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
E+L AGDKLVVVDF + CG CK + P L+E +V FL+V+ ++ + + V
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
+P F+F++ +V FS N
Sbjct: 73 SMPTFQFFKKGQ-KVGEFSGAN 93
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
E+L AGDKLVVVDF + CG CK + P L+E +V FL+V+ ++ + + V
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
+P F+F++ +V FS N
Sbjct: 73 CMPTFQFFKKGQ-KVGEFSGAN 93
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
E+L AGDKLVVVDF + CG K + P L+E +V FL+V+ ++ + + V
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDSQDVASESEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
+P F+F++ +V FS N
Sbjct: 73 SMPTFQFFKKGQ-KVGEFSGAN 93
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
E+L AGDKLVVVDF + CG K + P L+E +V FL+V+ ++ + + V
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
P F+F++ +V FS N
Sbjct: 73 ATPTFQFFKKGQ-KVGEFSGAN 93
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%)
Query: 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
+S +GDKLVVVDFF+ CG K + P I + AE D F +++ +E + V
Sbjct: 20 DSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVS 79
Query: 100 VLPFFRFYRGAHGRVCSFSCTNATIKK 126
+P FY+G A IK+
Sbjct: 80 SMPTLIFYKGGKEVTRVVGANPAAIKQ 106
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%)
Query: 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
+S +GDKLVVVDFF+ CG K + P I + AE D F +++ +E + V
Sbjct: 12 DSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVS 71
Query: 100 VLPFFRFYRGAHGRVCSFSCTNATIKK 126
+P FY+G A IK+
Sbjct: 72 SMPTLIFYKGGKEVTRVVGANPAAIKQ 98
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
E+L AGDKLVVVDF + CG CK + P L+E +V FL+V+ + + + V
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVNDCQDVASECEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
+P F+F++ +V FS N
Sbjct: 73 CMPTFQFFKKGQ-KVGEFSGAN 93
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
E+L AGDKLVVVDF + CG CK + P L+E +V FL+V+ ++ + + V
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
P F+F++ +V FS N
Sbjct: 73 CTPTFQFFKKGQ-KVGEFSGAN 93
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNY 86
+ ++ DL L A KLVV+DFF+ CG CK + PK+ +L+ D V L+V+
Sbjct: 6 MVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDV 65
Query: 87 EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL 131
+E + + N+ +P F F + +V F+ NA K+ +D +
Sbjct: 66 DECEDIAMEYNISSMPTFVFLKNGV-KVEEFAGANA--KRLEDVI 107
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNY 86
+ ++ DL L A KLVV+DFF+ CG CK + PK+ +L+ D V L+V+
Sbjct: 1 MVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDV 60
Query: 87 EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL 131
+E + + N+ +P F F + +V F+ NA K+ +D +
Sbjct: 61 DECEDIAMEYNISSMPTFVFLKNGV-KVEEFAGANA--KRLEDVI 102
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN-YEEHKSMCYSLNVHVLPF 103
AGDK VV+D F+ CG KA+ PK +LAE DV FL+++ +E+K++ L + V+P
Sbjct: 22 AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPT 81
Query: 104 FRFYR 108
F+ +
Sbjct: 82 FKILK 86
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
E+L AGDKLVVVDF + CG K + P L+E +V FL+V+ ++ + + V
Sbjct: 24 EALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVK 83
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
+P F+F++ +V FS N
Sbjct: 84 SMPTFQFFKKGQ-KVGEFSGAN 104
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
E+L AGDKLVVVDF + CG K + P L+E +V FL+V+ ++ + + V
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
+P F+F++ +V FS N
Sbjct: 73 RMPTFQFFKKGQ-KVGEFSGAN 93
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107
KL+VVDF + C CK + P +LA+ P+V FL+V+ +E K++ NV +P F F
Sbjct: 27 KLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTFIFL 86
Query: 108 R 108
+
Sbjct: 87 K 87
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 49 LVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108
LVVVDF + CG C+ + P LA+ P+V FL+V+ +E KS+ + +P F F +
Sbjct: 40 LVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLK 99
Query: 109 GAHGRVCSFSCTNATIKKFKDALAKH 134
G++ A + + +AKH
Sbjct: 100 --EGKILD-KVVGAKKDELQSTIAKH 122
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
E+L AGDKLVVVDF + CG CK + P L+E +V FL+V+ ++ + + V
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDXQDVASEXEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
+P F+F++ +V FS N
Sbjct: 73 CMPTFQFFKKGQ-KVGEFSGAN 93
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
E+L AGDKLVVVDF + CG CK + P L+E +V FL+V+ ++ + + +
Sbjct: 13 EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVAPKYGIR 72
Query: 100 VLPFFRFYRGAHGRVCSF---SCTNATIKKFKDA 130
+P ++ +G V + + + +K+F DA
Sbjct: 73 GIPTLLLFK--NGEVAATKVGALSKGQLKEFLDA 104
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 44 HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF 103
+ KLVV+DF + CG C+ + P LA+ P+ FL+V+ +E K + +V +P
Sbjct: 31 NTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPT 90
Query: 104 FRFYR 108
F F +
Sbjct: 91 FLFMK 95
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
E+L AGDKLVVVDF + G K + P L+E +V FL+V+ ++ + + V
Sbjct: 13 EALDAAGDKLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
+P F+F++ +V FS N
Sbjct: 73 CMPTFQFFKKGQ-KVGEFSGAN 93
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107
KLV++DF + CG C+ + P + A+ P FL+V+ +E K + + NV +P F F
Sbjct: 29 KLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFLFI 88
Query: 108 R 108
+
Sbjct: 89 K 89
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 21 SSPLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQ 80
S ++ +EL + DL L +KLVVVDFF+ CG CK + P +L+E D
Sbjct: 7 SQLVIMSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE-KYDAI 65
Query: 81 FLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH--GRVCSFSCTNATIKKFKDALAK 133
F++V+ ++ + N+ +P F + G V A+I K +D + K
Sbjct: 66 FVKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDV-----VGASIAKVEDMIKK 115
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 30 LELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 89
+EL + DL L +KLVVVDFF+ CG CK + P +L+E D F++V+ ++
Sbjct: 7 IELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE-KYDAIFVKVDVDKL 65
Query: 90 KSMCYSLNVHVLPFFRFYRGAH--GRV--CSFSCTNATIKKF 127
+ N+ +P F + G V S + IKKF
Sbjct: 66 EETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIKKF 107
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 24 LVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM--NPDVQF 81
LV R ++++ D + + GDK+VV+DF++ CG CK + P ++++ V F
Sbjct: 11 LVPRGSVQVISSYDQFKQV-TGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGF 69
Query: 82 LQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 135
+V+ +E + + + +P F F++ +G+ + A K + A+ +H+
Sbjct: 70 YKVDVDEQSQIAQEVGIRAMPTFVFFK--NGQKID-TVVGADPSKLQAAITQHS 120
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%)
Query: 32 LGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS 91
+G D L AG +L VV F GCG C + P ++ P FL+V+ + +
Sbjct: 6 VGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQG 65
Query: 92 MCYSLNVHVLPFFRFYR 108
+ N+ P F+F+R
Sbjct: 66 TAATNNISATPTFQFFR 82
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 13/116 (11%)
Query: 21 SSPLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQ 80
S P+VH G H+ L+ + A LV+VDFF+ CG C+ L + +AE N DV
Sbjct: 2 SDPIVHFN----GTHEALLNRIKEA-PGLVLVDFFATWCGPCQRLGQILPSIAEANKDVT 56
Query: 81 FLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRV--------CSFSCTNATIKKFK 128
F++V+ +++ + + V +P F + + S A I+KFK
Sbjct: 57 FIKVDVDKNGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRIKADIEKFK 112
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%)
Query: 45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
A DKLVVVDF++ CG CK + P I + +E P F +++ +E + V +P
Sbjct: 16 AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTL 75
Query: 105 RFYRGAHGRVCSFSCTNATIKK 126
++ A IK+
Sbjct: 76 LLFKNGKEVAKVVGANPAAIKQ 97
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%)
Query: 45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
A DKLVVVDF++ CG CK + P I + +E P F +++ +E + V +P
Sbjct: 22 AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTL 81
Query: 105 RFYRGAHGRVCSFSCTNATIKK 126
++ A IK+
Sbjct: 82 LLFKNGKEVAKVVGANPAAIKQ 103
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 106
+K+VVVDF++ C C L P I +LA P V F ++N EE + + + LP F
Sbjct: 23 NKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQDIAMRYGIMSLPTIMF 82
Query: 107 YRGAH 111
++
Sbjct: 83 FKNGE 87
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107
K+V++DF + CG C+ + P + A+ P FL+V+ +E K + NV +P F F
Sbjct: 37 KVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFI 96
Query: 108 R 108
+
Sbjct: 97 K 97
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 44 HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF 103
+ KLVV+DF + CG + + P LA+ P+ FL+V+ +E K + +V +P
Sbjct: 34 NTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPT 93
Query: 104 FRFYR 108
F F +
Sbjct: 94 FLFMK 98
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 41 SLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHV 100
+L DKLV+ DF++ CG CK + P + +L + PDV+F++ + +E + V
Sbjct: 25 NLIKQNDKLVI-DFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTA 83
Query: 101 LPFFRFYRGAHGRV 114
+P F G G++
Sbjct: 84 MPTFVL--GKDGQL 95
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLP- 102
AG L +VDFF+P CG C+ + P + +LA + ++ ++VN +EH + V +P
Sbjct: 48 AGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPT 107
Query: 103 FFRFYRGA 110
F RGA
Sbjct: 108 LVLFRRGA 115
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
A DKLVVVDF++ CG K + P I + +E P F +++ +E + V +P
Sbjct: 22 AQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTL 81
Query: 105 RFYRGAHGRVCSFSCTNATIKK 126
++ A IK+
Sbjct: 82 LLFKNGKEVAKVVGANPAAIKQ 103
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 34 RHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKIC----QLAEMNPDVQFLQVNYEEH 89
R + E+L A K ++V+F++P CG CKAL P+ +L +++ +V+ E
Sbjct: 13 RKSNFAEAL--AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE 70
Query: 90 KSMCYSLNVHVLPFFRFYR 108
+ V P +F+R
Sbjct: 71 SDLAQQYGVRGYPTIKFFR 89
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 50 VVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108
V+VDF++P CG CK + P I +LA E + + ++N +E + N+ +P F++
Sbjct: 21 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 80
Query: 109 GAHGR 113
+
Sbjct: 81 NGERK 85
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 50 VVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108
V+VDF++P CG CK + P I +LA E + + ++N +E + N+ +P F++
Sbjct: 20 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 79
Query: 109 GAHGR 113
+
Sbjct: 80 NGERK 84
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107
K+V+ +F + CG CK + P +L+E P + FL ++ +E S + P F F
Sbjct: 47 KIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFL 106
Query: 108 RGAH 111
R
Sbjct: 107 RDGQ 110
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 106
++LV+VDFF+ CG CK + P + ++ + F++V+ +E + N+ +P F+
Sbjct: 26 NELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKV 85
Query: 107 YRGAHGRVCSFSCTNATIKKFKDALA 132
Y+ ++ +K+ + A
Sbjct: 86 YKNGSSVDTLLGANDSALKQLIEKYA 111
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF 104
GDK V+VDF++ CG C+ + P + + AE + D V ++N +E+ + +P
Sbjct: 16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 105 RFYRGAH 111
++G
Sbjct: 76 ILFKGGE 82
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 51 VVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 109
V+DF++P CG C++ P + AE V+F++VN E ++ + +P YR
Sbjct: 59 VIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIXLYRN 118
Query: 110 A 110
Sbjct: 119 G 119
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF 104
GDK V+VDF++ CG C+ + P + + AE + D V ++N +E+ + +P
Sbjct: 16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 105 RFYRGAH 111
++G
Sbjct: 76 ILFKGGR 82
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
A ++ VVDF++ C C L P I +LAE P V F ++N +E+ + V LP
Sbjct: 14 ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTV 73
Query: 105 RFYR 108
F++
Sbjct: 74 IFFK 77
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
DK V+VDF++ CG C+ + P + + AE ++ +++N +E+ V +P
Sbjct: 23 DKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLN 82
Query: 106 FYRGAH 111
Y+G
Sbjct: 83 VYQGGE 88
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 49 LVVVDFFSPGCGGCKALHPKICQLAE--MNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 106
LV+ +FF+P CG CK + P+ + AE + ++ Q++ E++ +C N+ P +
Sbjct: 33 LVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKI 92
Query: 107 YRGA 110
++ +
Sbjct: 93 FKNS 96
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAE 74
K V+V +++P CG CK L P +LA+
Sbjct: 377 KDVLVLYYAPWCGHCKRLAPTYQELAD 403
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNV 98
E + GDK +VDF++ CG CK + P + +LA E + + +V+ E+ + + + +
Sbjct: 31 EEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGI 90
Query: 99 HVLPFFRF 106
+P F
Sbjct: 91 RSIPSILF 98
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF 104
GD V+VDF++ CG C+ + P + + AE + D V ++N +E+ + +P
Sbjct: 16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 105 RFYRGAH 111
++G
Sbjct: 76 ILFKGGE 82
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF 104
GD V+VDF++ CG C+ + P + + AE + D V ++N +E+ + +P
Sbjct: 16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 105 RFYRGAH 111
++G
Sbjct: 76 ILFKGGR 82
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 50 VVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108
V+VDF++P CG K + P I +LA E + + ++N +E + N+ +P F++
Sbjct: 21 VMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 80
Query: 109 GAHGR 113
+
Sbjct: 81 NGERK 85
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKI----CQLAEMNPDVQFLQV 84
+ L KD + + + D +++V+F++P CG CK L P+ +L++ +P + +V
Sbjct: 7 GVTLSLTKDNFDDVVNNAD-IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKV 65
Query: 85 NYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPT 144
+ E + +V P + +R GR + N +K+ + + ++ G GP+
Sbjct: 66 DATEQTDLAKRFDVSGYPTLKIFR--KGRPFDY---NGPREKY--GIVDYMIEQSGSGPS 118
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV-NYEEHKSMCYSLNVHVLPFFRF 106
K V V+F++P CG CK L P +L E D + + + + + ++ VH P +F
Sbjct: 268 KNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKF 327
Query: 107 YRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCG 140
+ + R T+ FK L D G
Sbjct: 328 FPASADRTVIDYNGERTLDGFKKFLESGGQDGAG 361
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107
K+V+ +F + CG + + P +L+E P + FL ++ +E S + P F F
Sbjct: 47 KIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFL 106
Query: 108 RGAH 111
R
Sbjct: 107 RDGQ 110
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D L +V+F++P CG C+ L P+ + A D V+ VN ++H+S+ V P +
Sbjct: 35 DGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIK 94
Query: 106 FY 107
+
Sbjct: 95 IF 96
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 44 HAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLP 102
+ GDK +VDF++ CG CK + P + +L+ E + +VN ++ + + +P
Sbjct: 48 YLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIP 107
Query: 103 FFRF 106
F
Sbjct: 108 TIWF 111
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 50 VVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108
V+VDF++P CG C+ + P + ++A E ++ +++N +E ++ + +P ++
Sbjct: 22 VLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFK 81
Query: 109 GAHGRVC 115
G G+ C
Sbjct: 82 G--GKKC 86
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 44 HAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLP 102
+ GDK +VDF++ CG CK + P + +L+ E + +VN ++ + + +P
Sbjct: 48 YLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIP 107
Query: 103 FFRF 106
F
Sbjct: 108 TIWF 111
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 49 LVVVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107
+V+ DF++P CG CK + P + +L EM ++ ++++ +E++ V +P
Sbjct: 19 VVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVL 78
Query: 108 RGAHGRVCSFSCTNATIKKFKDALAKH 134
+ G V S + ++ + KH
Sbjct: 79 K--DGEVVETSVGFKPKEALQELVNKH 103
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV-NYEEHKSMCYSLNVHVLPFFRF 106
K V V+F++P CG CK L P +L E D + + + + + ++ VH P +F
Sbjct: 26 KNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKF 85
Query: 107 YRGAHGRVCSFSCTNATIKKFKDAL 131
+ + R T+ FK L
Sbjct: 86 FPASADRTVIDYNGERTLDGFKKFL 110
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 45 AGDKLVVVDFFSPGCGGCKALHPKICQLAE--MNPDVQFLQVNYEEHKSMCYSLNVHVLP 102
AGDKL+V+ F + CKAL ++ N +V FL ++ +E+ + + +P
Sbjct: 19 AGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVP 78
Query: 103 FF 104
+F
Sbjct: 79 YF 80
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 48 KLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 106
K VVV F+SP C CKA P + A E F ++N + V P F+F
Sbjct: 25 KPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKF 84
Query: 107 YRGAHGR 113
+ HGR
Sbjct: 85 F--CHGR 89
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 46 GDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
DK V+VDF++P CG C+ + P I +LA E V+ ++VN +E+ + + +P
Sbjct: 18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTL 77
Query: 105 RFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
++ +G+V + K+ + KH
Sbjct: 78 LLFK--NGQVVDRLVGAQPKEALKERIDKH 105
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 49 LVVVDFFSPGCGGCKALHPK----ICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
+++V+F++P CG CK L P+ +L++ +P + +V+ + +V P
Sbjct: 149 IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTL 208
Query: 105 RFYR 108
+ +R
Sbjct: 209 KIFR 212
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEM----NPDVQFLQVNYEEHKSMCYSLNVHV 100
A V+++F++P CG CK P+ ++A + +P + +++ + +V
Sbjct: 30 ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSG 89
Query: 101 LPFFRFYRGAHG 112
P + +
Sbjct: 90 YPTIKILKKGQA 101
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 106 FYRGAHGRVCSF-SCTNATIKKFKDA 130
++ C + + +K+F DA
Sbjct: 80 LFKNGEVAACKVGALSKGQLKEFLDA 105
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMN----PDVQFLQVNYEEHKSMCYSLNVHVLP 102
+ + + F++P CG CK L P +L++ V+ +V+ +++C +V P
Sbjct: 23 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYP 82
Query: 103 FFRFYRGA 110
+RG
Sbjct: 83 TLLLFRGG 90
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 49 LVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107
LV+VDF++ CG CK + P + ++ E V +VN +++ + V +P
Sbjct: 22 LVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLV 81
Query: 108 R 108
R
Sbjct: 82 R 82
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMN----PDVQFLQVNYEEHKSMCYSLNVHVLP 102
+ + + F++P CG CK L P +L++ V+ +V+ +++C +V P
Sbjct: 21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYP 80
Query: 103 FFRFYRGA 110
+RG
Sbjct: 81 TLLLFRGG 88
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKI-CQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLP-FF 104
D ++VDF++P CG C+ + P+ A + V+ +++ + H ++ + +P F
Sbjct: 64 DLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFI 123
Query: 105 RFYRG 109
F++G
Sbjct: 124 LFHKG 128
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMN----PDVQFLQVNYEEHKSMCYSLNVHVLP 102
+ + + F++P CG CK L P +L++ V+ +V+ +++C +V P
Sbjct: 16 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYP 75
Query: 103 FFRFYRGA 110
+RG
Sbjct: 76 TLLLFRGG 83
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLAE 74
+K V+++F++P CG CK L PK +L E
Sbjct: 370 NKDVLIEFYAPWCGHCKNLEPKYKELGE 397
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 49 LVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107
L++V+FF+P CG K L P+ A + V +V+ + + C V P + +
Sbjct: 23 LMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIF 82
Query: 108 R 108
R
Sbjct: 83 R 83
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain
Of Human Protein Disulfide-Isomerase A3
Length = 142
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLAE 74
+K V+++F++P CG CK L PK +L E
Sbjct: 45 NKDVLIEFYAPWCGHCKNLEPKYKELGE 72
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 51 VVDFFSPGCGGCKALHPKICQLAEM-NPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108
VVDF++P CG C+ P+ LA M V+ +V+ + + C + P + Y+
Sbjct: 25 VVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQ 83
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 49 LVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108
L+VV F++P C ++ + +LA+ P V F+++ E + + +P F F++
Sbjct: 34 LLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 93
Query: 109 GAH 111
+
Sbjct: 94 NSQ 96
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Query: 52 VDFFSPGCGGCKALHPKICQLAE----MNPDVQF--LQVNYEEHKSMCYSLNVHVLPFFR 105
V+FF+ CG C A P LAE P + L E + ++C N+ P R
Sbjct: 35 VEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVR 94
Query: 106 FYRG--AHGRVCSFSCTNATIKKFK----DALAKH 134
F+ +G F A ++ + DAL H
Sbjct: 95 FFXAFTXNGSGAVFPVAGADVQTLRERLIDALESH 129
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 49 LVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107
L++V+FF+P CG CK L P+ A + V +V+ + + C V P + +
Sbjct: 23 LMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIF 82
Query: 108 R 108
R
Sbjct: 83 R 83
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 33.5 bits (75), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQF---LQVNYEEHKSMCYSLNVHVLPFF 104
K V+++F++P CG CKAL PK +L + +F + + + + + P
Sbjct: 26 KDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTI 85
Query: 105 RFY-RGAHGRVCSFS 118
+ Y GA G+ ++S
Sbjct: 86 KLYPAGAKGQPVTYS 100
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 50 VVVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLP 102
VVVDF + CG CK L P++ ++ A+ + V +V+ ++H + V +P
Sbjct: 34 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVP 87
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 49 LVVVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107
+V+ DF++P CG K + P + +L EM ++ ++++ +E++ V +P
Sbjct: 19 VVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVL 78
Query: 108 RGAHGRVCSFSCTNATIKKFKDALAKH 134
+ G V S + ++ + KH
Sbjct: 79 K--DGEVVETSVGFKPKEALQELVNKH 103
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 49 LVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108
L+VV F++P C ++ + +LA+ P V F+++ E + + +P F F++
Sbjct: 40 LLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 99
Query: 109 GAH 111
+
Sbjct: 100 NSQ 102
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 49 LVVVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107
+V+ DF++P CG K + P + +L EM ++ ++++ +E++ V +P
Sbjct: 19 VVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVL 78
Query: 108 RGAHGRVCSFSC 119
+ G V S
Sbjct: 79 K--DGEVVETSV 88
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 45 AGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPF 103
+ +K V+VDF++ CG CK + P + ++A E D+ +++ + + + V +P
Sbjct: 28 SSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPT 87
Query: 104 FRFYRGAH--GRVCSFSCTNATIKKFKDAL 131
++ R+ A +++ D +
Sbjct: 88 LILFKDGQPVKRIVGAKGKAALLRELSDVV 117
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 44 HAGDKLVVVDFFSPGCGGCKALHPKICQLAE-MNPDVQFLQVN--YEEHKSMCYSLNVHV 100
H + +V+F++P CG CK L + A+ ++ VQ VN ++K++C +V+
Sbjct: 32 HNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNG 91
Query: 101 LPFFRFYR 108
P +R
Sbjct: 92 FPTLMVFR 99
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRSIPTLL 79
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 80 LFK--NGEVAATKVGALSKGQLKEFLDA 105
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 45 AGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPF 103
+ +K V+VDF++ CG CK + P + ++A E D+ +++ + + + V +P
Sbjct: 23 SSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPT 82
Query: 104 FRFYRGAH--GRVCSFSCTNATIKKFKDAL 131
++ R+ A +++ D +
Sbjct: 83 LILFKDGQPVKRIVGAKGKAALLRELSDVV 112
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 17/84 (20%)
Query: 36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMC 93
++L+E W +++F++P C C+ L P+ AE D V +V+ E +
Sbjct: 18 RELLEGDW-------MIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLS 70
Query: 94 YSLNVHVLPF--------FRFYRG 109
++ LP FR Y+G
Sbjct: 71 GRFIINALPTIYHCKDGEFRRYQG 94
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 80 LFK--NGEVAATKVGALSKGQLKEFLDA 105
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 80 LFK--NGEVAATKVGALSKGQLKEFLDA 105
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 80 LFK--NGEVAATKVGALSKGQLKEFLDA 105
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 80 LFK--NGEVAATKVGALSKGQLKEFLDA 105
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 80 LFK--NGEVAATKVGALSKGQLKEFLDA 105
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 80 LFK--NGEVAATKVGALSKGQLKEFLDA 105
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 50 VVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLP 102
+++ F C CK + P ++A +M D++F ++ E+ + LN+ LP
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMAELNIRTLP 73
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 80 LFK--NGEVAATKVGALSKGQLKEFLDA 105
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV 84
K V+ F++P C C A P + Q+A NP V F+ +
Sbjct: 25 KPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGI 61
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 51 VVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 109
+VDF++ CG CK + P + +L A+ L+++ +E+ S V +P ++
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 110 AH 111
Sbjct: 83 GQ 84
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 80 LFK--NGEVAATKVGALSKGQLKEFLDA 105
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 80 LFK--NGEVAATKVGALSKGQLKEFLDA 105
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 80 LFK--NGEVAATKVGALSKGQLKEFLDA 105
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 30 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 89
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 90 LFK--NGEVAATKVGALSKGQLKEFLDA 115
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 80 LFK--NGDVAATKVGALSKGQLKEFLDA 105
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 51 VVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 109
+VDF++ CG CK + P + +L A+ L+++ +E+ S V +P ++
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 110 AH 111
Sbjct: 84 GQ 85
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 51 VVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 109
+VDF++ CG CK + P + +L A+ L+++ +E+ S V +P ++
Sbjct: 23 LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 110 AH 111
Sbjct: 83 GQ 84
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + P + +A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 80 LFK--NGEVAATKVGALSKGQLKEFLDA 105
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + P + ++A E + ++N +++ + P
Sbjct: 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGTPTLL 80
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 81 LFK--NGEVAATKVGALSKGQLKEFLDA 106
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 48 KLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 106
+L V+F+SPGC C L P + A E++ ++ VN + + +C V+ P
Sbjct: 115 ELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFI 174
Query: 107 YRGAHGRV 114
+R V
Sbjct: 175 FRSGMAAV 182
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + P + ++A + + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 80 LFK--NGEVAATKVGALSKGQLKEFLDA 105
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 51 VVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 109
+VDF++ CG CK + P + +L A+ L+++ +E+ S V +P ++
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 110 AH 111
Sbjct: 84 GQ 85
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG C+ + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 80 LFK--NGEVAATKVGALSKGQLKEFLDA 105
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 106
D L V F + CG CK + + ++A P V+F +V+ + + + V LP F
Sbjct: 37 DILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFII 96
Query: 107 YRGA 110
R
Sbjct: 97 ARSG 100
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 50 VVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108
+VVDF + CG CK + P L+ + V FL+V+ + ++ + + +P F Y+
Sbjct: 27 IVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYK 86
Query: 109 GAHGRVCSFSCTNATIKKFKDALAKH 134
V + A+ K K +AKH
Sbjct: 87 DG---VKADDLVGASQDKLKALVAKH 109
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG K + P + ++A E + ++N +++ + +P
Sbjct: 40 DGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 99
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 100 LFK--NGEVAATKVGALSKGQLKEFLDA 125
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K F DA
Sbjct: 80 LFK--NGEVAATKVGALSKGQLKCFLDA 105
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV-NYEEHKSMCYSLNVHVLPFFRF 106
K V+ F++P C C+ P + Q+A +P+V F+ V ++ +M +N + + F
Sbjct: 40 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQ 99
Query: 107 YRGAHGRV-CSFSCTNATIKKFKD 129
G V +F T F D
Sbjct: 100 LADTDGSVWANFGVTQQPAYAFVD 123
>pdb|2TRC|P Chain P, PhosducinTRANSDUCIN BETA-Gamma Complex
Length = 217
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 50 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 109
+VV+ + G GC AL+ + LA P V+F ++ + + VLP Y+G
Sbjct: 123 IVVNIYEDGVRGCDALNSSLECLAAEYPXVKFCKIR-ASNTGAGDRFSSDVLPTLLVYKG 181
Query: 110 AH 111
Sbjct: 182 GE 183
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV-NYEEHKSMCYSLNVHVLPFFRF 106
K V+ F++P C C+ P + Q+A +P+V F+ V ++ +M +N + + F
Sbjct: 26 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQ 85
Query: 107 YRGAHGRV-CSFSCTNATIKKFKD 129
G V +F T F D
Sbjct: 86 LADTDGSVWANFGVTQQPAYAFVD 109
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 106 FYRGAH 111
++
Sbjct: 80 LFKNGE 85
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ C CK + P + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 80 LFK--NGEVAATKVGALSKGQLKEFLDA 105
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
D ++VDF++ CG CK + + ++A E + ++N +++ + +P
Sbjct: 20 DGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
Query: 106 FYRGAHGRVCSF---SCTNATIKKFKDA 130
++ +G V + + + +K+F DA
Sbjct: 80 LFK--NGEVAATKVGALSKGQLKEFLDA 105
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMC---YSLNVHVLP 102
D ++VDF++ CG CK + P + ++A E + ++N +++ + L
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYIERGIPTLL 79
Query: 103 FFRFYRGAHGRVCSFSCTNATIKKFKDA 130
F+ A +V + S +K+F DA
Sbjct: 80 LFKNGEVAATKVGALS--KGQLKEFLDA 105
>pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 245
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 50 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 109
+VV + G GC AL+ + LA P V+F ++ + + VLP Y+G
Sbjct: 136 IVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKA-SNTGAGDRFSSDVLPTLLVYKG 194
Query: 110 AHGRVCSFSCTNATIKKF 127
S T ++F
Sbjct: 195 GELLSNFISVTEQLAEEF 212
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAE 74
K V+++F++P CG CK L P L +
Sbjct: 26 KDVLIEFYAPWCGHCKQLEPIYTSLGK 52
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 45 AGDKLVVVDFFSPGCGGCKALHPKICQLA----EMNPDVQFLQVNYEEHKSMCYSLNVHV 100
A V+++F++P CG CK P+ ++A + +P + +++ + +V
Sbjct: 32 ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSG 91
Query: 101 LPFFRFYRGAHG 112
P + +
Sbjct: 92 YPTIKILKKGQA 103
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 12/88 (13%)
Query: 33 GRHKDLVESLWHAGDKLVV-------VDFFSPGCGGCKALHPKICQLA-----EMNPDVQ 80
G D++E + DK V+ V+F++P CG CK L P+ A + V+
Sbjct: 4 GSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVK 63
Query: 81 FLQVNYEEHKSMCYSLNVHVLPFFRFYR 108
V+ ++ + + P + ++
Sbjct: 64 LAAVDATVNQVLASRYGIRGFPTIKIFQ 91
>pdb|2L5O|A Chain A, Solution Structure Of A Putative Thioredoxin From
Neisseria Meningitidis
Length = 153
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAE--MNPDVQFLQV 84
K+ +++F+ P C GC + PKI + A N + Q L V
Sbjct: 29 KVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAV 67
>pdb|3H93|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Dsba
Length = 192
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQV 84
K+ VV+ F GC C A P I +E P DV F+++
Sbjct: 26 KIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRL 63
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 50 VVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108
+VV F + CG CK + P L+ + V FL+V+ + ++ + + +P F Y+
Sbjct: 27 IVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYK 86
Query: 109 GAHGRVCSFSCTNATIKKFKDALAKH 134
V + A+ K K +AKH
Sbjct: 87 DG---VKADDLVGASQDKLKALVAKH 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,774,419
Number of Sequences: 62578
Number of extensions: 208222
Number of successful extensions: 462
Number of sequences better than 100.0: 135
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 138
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)