Query 027830
Match_columns 218
No_of_seqs 290 out of 1836
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 15:51:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.9 1.2E-23 2.5E-28 160.6 11.2 107 27-136 42-149 (150)
2 cd03006 PDI_a_EFP1_N PDIa fami 99.9 2.4E-22 5.3E-27 149.1 12.9 102 27-131 9-113 (113)
3 PF00085 Thioredoxin: Thioredo 99.9 8.2E-22 1.8E-26 142.3 14.4 98 34-134 5-103 (103)
4 cd02999 PDI_a_ERp44_like PDIa 99.9 3.3E-22 7.2E-27 145.4 11.7 93 36-131 7-100 (100)
5 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 4.8E-22 1E-26 144.8 12.5 101 28-131 2-104 (104)
6 cd02985 TRX_CDSP32 TRX family, 99.9 2E-21 4.4E-26 141.8 14.1 97 34-133 2-101 (103)
7 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 9E-22 1.9E-26 142.8 12.0 98 28-130 2-100 (101)
8 cd02954 DIM1 Dim1 family; Dim1 99.9 6.7E-22 1.5E-26 146.2 11.1 77 35-111 2-79 (114)
9 KOG0907 Thioredoxin [Posttrans 99.9 2.3E-21 5.1E-26 142.0 13.1 94 38-134 12-105 (106)
10 PHA02278 thioredoxin-like prot 99.9 2.8E-21 6.2E-26 141.1 12.6 94 33-130 2-100 (103)
11 cd02956 ybbN ybbN protein fami 99.9 3.1E-21 6.8E-26 138.4 12.3 94 37-132 2-96 (96)
12 cd02996 PDI_a_ERp44 PDIa famil 99.9 4.9E-21 1.1E-25 140.6 12.1 100 28-131 2-108 (108)
13 COG3118 Thioredoxin domain-con 99.9 3.4E-21 7.3E-26 161.5 12.0 108 27-137 23-132 (304)
14 cd02948 TRX_NDPK TRX domain, T 99.9 1.5E-20 3.2E-25 137.0 13.5 97 31-133 3-101 (102)
15 PLN00410 U5 snRNP protein, DIM 99.9 1.3E-20 2.8E-25 144.4 13.6 107 29-136 5-121 (142)
16 cd02963 TRX_DnaJ TRX domain, D 99.9 8.8E-21 1.9E-25 140.3 11.5 98 34-133 10-110 (111)
17 cd03065 PDI_b_Calsequestrin_N 99.8 1.9E-20 4.1E-25 140.2 12.6 103 28-135 10-119 (120)
18 cd02994 PDI_a_TMX PDIa family, 99.8 2.6E-20 5.7E-25 134.9 12.6 98 28-133 2-101 (101)
19 PRK09381 trxA thioredoxin; Pro 99.8 5.4E-20 1.2E-24 135.1 14.3 105 27-135 3-108 (109)
20 cd02989 Phd_like_TxnDC9 Phosdu 99.8 3.3E-20 7.2E-25 137.7 12.6 84 26-111 3-86 (113)
21 cd03002 PDI_a_MPD1_like PDI fa 99.8 2.8E-20 6.2E-25 136.2 12.0 100 29-131 2-108 (109)
22 cd02957 Phd_like Phosducin (Ph 99.8 6.5E-20 1.4E-24 136.0 13.2 83 27-111 4-87 (113)
23 cd03001 PDI_a_P5 PDIa family, 99.8 8.4E-20 1.8E-24 132.2 13.0 100 29-131 2-102 (103)
24 KOG0908 Thioredoxin-like prote 99.8 3.2E-20 6.9E-25 151.4 11.4 109 27-138 1-109 (288)
25 cd02986 DLP Dim1 family, Dim1- 99.8 1.2E-19 2.6E-24 133.5 12.2 99 35-133 2-109 (114)
26 PRK10996 thioredoxin 2; Provis 99.8 2.9E-19 6.2E-24 137.4 14.9 108 23-135 31-139 (139)
27 KOG0190 Protein disulfide isom 99.8 2.1E-20 4.6E-25 167.4 9.4 127 4-136 344-474 (493)
28 cd02993 PDI_a_APS_reductase PD 99.8 1.6E-19 3.5E-24 133.0 11.5 101 29-131 3-109 (109)
29 PTZ00443 Thioredoxin domain-co 99.8 2.9E-19 6.3E-24 147.2 14.1 107 27-136 30-140 (224)
30 PTZ00051 thioredoxin; Provisio 99.8 4.4E-19 9.5E-24 127.6 13.0 95 29-128 2-96 (98)
31 cd02984 TRX_PICOT TRX domain, 99.8 4.1E-19 8.8E-24 127.4 12.5 95 34-131 1-96 (97)
32 cd03005 PDI_a_ERp46 PDIa famil 99.8 2.8E-19 6.1E-24 129.2 11.4 97 29-131 2-102 (102)
33 cd02962 TMX2 TMX2 family; comp 99.8 8E-19 1.7E-23 136.6 14.2 90 27-118 28-125 (152)
34 cd02987 Phd_like_Phd Phosducin 99.8 5.4E-19 1.2E-23 140.8 13.5 109 25-134 60-174 (175)
35 cd02997 PDI_a_PDIR PDIa family 99.8 6.5E-19 1.4E-23 127.6 12.1 98 29-131 2-104 (104)
36 PTZ00102 disulphide isomerase; 99.8 7.3E-19 1.6E-23 159.5 15.1 129 4-137 336-467 (477)
37 TIGR01126 pdi_dom protein disu 99.8 6.3E-19 1.4E-23 127.0 11.6 97 35-135 3-102 (102)
38 TIGR01068 thioredoxin thioredo 99.8 1.4E-18 3E-23 124.7 13.2 98 35-135 3-101 (101)
39 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 5.6E-19 1.2E-23 127.8 11.2 99 29-131 2-104 (104)
40 KOG0190 Protein disulfide isom 99.8 3.9E-19 8.5E-24 159.3 12.2 127 25-160 23-153 (493)
41 cd02998 PDI_a_ERp38 PDIa famil 99.8 6E-19 1.3E-23 127.7 10.5 100 29-131 2-105 (105)
42 cd02965 HyaE HyaE family; HyaE 99.8 1.4E-18 3.1E-23 127.7 11.3 90 35-128 17-109 (111)
43 cd03000 PDI_a_TMX3 PDIa family 99.8 1.6E-18 3.5E-23 126.4 11.0 93 36-134 7-103 (104)
44 cd02953 DsbDgamma DsbD gamma f 99.8 1.3E-18 2.9E-23 126.7 9.6 95 36-132 2-104 (104)
45 cd02950 TxlA TRX-like protein 99.8 6.2E-18 1.3E-22 130.4 13.3 97 37-137 12-112 (142)
46 PTZ00062 glutaredoxin; Provisi 99.8 6.9E-18 1.5E-22 137.1 14.1 118 33-167 4-121 (204)
47 TIGR02187 GlrX_arch Glutaredox 99.8 4.6E-18 1E-22 139.7 13.2 125 46-175 18-151 (215)
48 cd02949 TRX_NTR TRX domain, no 99.8 8E-18 1.7E-22 121.3 12.5 92 38-132 5-97 (97)
49 KOG0191 Thioredoxin/protein di 99.8 2.2E-18 4.7E-23 153.0 10.9 129 45-175 45-180 (383)
50 TIGR00424 APS_reduc 5'-adenyly 99.8 8.8E-18 1.9E-22 151.1 14.2 112 22-134 345-462 (463)
51 cd02961 PDI_a_family Protein D 99.8 6.4E-18 1.4E-22 120.5 10.7 94 35-131 5-101 (101)
52 PLN02309 5'-adenylylsulfate re 99.8 1.1E-17 2.3E-22 150.5 14.2 111 23-134 340-456 (457)
53 KOG4277 Uncharacterized conser 99.8 1.8E-18 3.8E-23 144.9 8.1 121 45-171 41-165 (468)
54 TIGR01130 ER_PDI_fam protein d 99.7 4.2E-17 9.1E-22 146.8 16.0 130 29-167 3-139 (462)
55 cd03007 PDI_a_ERp29_N PDIa fam 99.7 1E-17 2.2E-22 124.3 9.8 99 29-134 3-115 (116)
56 cd02975 PfPDO_like_N Pyrococcu 99.7 2.4E-17 5.2E-22 122.4 11.4 96 38-136 15-111 (113)
57 cd02988 Phd_like_VIAF Phosduci 99.7 3.8E-17 8.3E-22 132.0 12.9 104 25-133 80-190 (192)
58 TIGR01130 ER_PDI_fam protein d 99.7 5.7E-17 1.2E-21 146.0 12.8 128 4-138 325-457 (462)
59 cd02947 TRX_family TRX family; 99.7 1.2E-16 2.6E-21 111.7 11.7 91 37-131 2-92 (93)
60 cd02952 TRP14_like Human TRX-r 99.7 1E-16 2.2E-21 119.7 10.9 97 31-130 5-117 (119)
61 PTZ00102 disulphide isomerase; 99.7 2E-16 4.3E-21 143.6 14.9 107 26-138 31-141 (477)
62 cd02951 SoxW SoxW family; SoxW 99.7 1.7E-16 3.6E-21 119.4 11.8 99 36-136 4-120 (125)
63 TIGR01295 PedC_BrcD bacterioci 99.7 2.5E-16 5.5E-21 118.4 12.4 94 34-132 12-121 (122)
64 cd02992 PDI_a_QSOX PDIa family 99.7 1.4E-16 3E-21 118.4 10.8 82 28-111 2-89 (114)
65 cd02982 PDI_b'_family Protein 99.6 1.2E-15 2.6E-20 110.4 9.8 88 47-134 12-102 (103)
66 KOG0912 Thiol-disulfide isomer 99.6 7.6E-16 1.7E-20 129.1 8.7 99 37-138 5-109 (375)
67 TIGR00411 redox_disulf_1 small 99.6 7.6E-15 1.6E-19 101.9 10.7 79 50-134 2-81 (82)
68 PRK00293 dipZ thiol:disulfide 99.6 1.6E-14 3.6E-19 134.1 13.0 109 26-135 451-570 (571)
69 TIGR02740 TraF-like TraF-like 99.6 7.6E-14 1.7E-18 118.5 14.0 96 40-136 159-265 (271)
70 cd02959 ERp19 Endoplasmic reti 99.5 9E-15 2E-19 109.2 6.4 89 45-135 17-113 (117)
71 TIGR02187 GlrX_arch Glutaredox 99.5 9.9E-14 2.2E-18 114.0 12.0 90 39-133 125-214 (215)
72 PHA02125 thioredoxin-like prot 99.5 1.4E-13 3.1E-18 94.6 10.0 72 51-131 2-73 (75)
73 TIGR02738 TrbB type-F conjugat 99.5 2E-13 4.3E-18 106.5 11.8 88 47-135 50-153 (153)
74 KOG0191 Thioredoxin/protein di 99.5 1.1E-13 2.3E-18 123.1 10.1 144 28-174 145-304 (383)
75 TIGR00412 redox_disulf_2 small 99.5 5.1E-13 1.1E-17 92.1 9.1 72 51-131 2-75 (76)
76 PF13098 Thioredoxin_2: Thiore 99.5 3.4E-13 7.4E-18 99.0 8.5 85 45-131 3-112 (112)
77 PRK15412 thiol:disulfide inter 99.4 1.2E-12 2.7E-17 105.1 12.1 88 46-136 67-177 (185)
78 PRK14018 trifunctional thiored 99.4 1E-12 2.2E-17 120.0 12.3 89 46-135 55-173 (521)
79 cd02973 TRX_GRX_like Thioredox 99.4 7.2E-13 1.6E-17 88.7 7.5 59 51-111 3-61 (67)
80 cd02955 SSP411 TRX domain, SSP 99.4 1.7E-12 3.7E-17 97.8 10.3 73 36-110 6-90 (124)
81 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 3E-12 6.6E-17 91.0 10.9 83 40-128 5-87 (89)
82 TIGR00385 dsbE periplasmic pro 99.4 3.5E-12 7.5E-17 101.4 11.0 87 46-136 62-172 (173)
83 cd03010 TlpA_like_DsbE TlpA-li 99.4 3.9E-12 8.6E-17 95.5 10.8 79 46-127 24-126 (127)
84 PRK03147 thiol-disulfide oxido 99.4 5.9E-12 1.3E-16 99.3 12.1 88 46-134 60-171 (173)
85 PF13905 Thioredoxin_8: Thiore 99.4 2.7E-12 5.9E-17 91.5 9.2 64 47-110 1-92 (95)
86 cd03008 TryX_like_RdCVF Trypar 99.4 3.2E-12 6.9E-17 98.8 9.7 73 45-118 23-129 (146)
87 cd02964 TryX_like_family Trypa 99.4 3.5E-12 7.5E-17 96.8 8.8 71 46-117 16-115 (132)
88 cd03009 TryX_like_TryX_NRX Try 99.4 4.6E-12 1E-16 95.8 9.3 70 46-116 17-114 (131)
89 COG4232 Thiol:disulfide interc 99.3 8.4E-12 1.8E-16 113.6 10.4 104 30-135 457-568 (569)
90 KOG1731 FAD-dependent sulfhydr 99.3 9.3E-13 2E-17 118.8 2.7 107 27-135 39-153 (606)
91 cd02966 TlpA_like_family TlpA- 99.3 3.6E-11 7.8E-16 86.9 9.9 71 46-117 18-113 (116)
92 PRK13728 conjugal transfer pro 99.3 6E-11 1.3E-15 94.6 11.7 85 51-137 73-173 (181)
93 PLN02919 haloacid dehalogenase 99.3 3.1E-11 6.7E-16 119.2 11.5 89 46-136 419-537 (1057)
94 cd03011 TlpA_like_ScsD_MtbDsbE 99.3 4.7E-11 1E-15 88.9 9.8 82 46-130 19-121 (123)
95 cd02958 UAS UAS family; UAS is 99.2 3.5E-10 7.5E-15 83.7 11.9 91 45-135 15-111 (114)
96 PRK11509 hydrogenase-1 operon 99.2 3.4E-10 7.4E-15 85.7 11.2 99 36-138 25-127 (132)
97 cd03012 TlpA_like_DipZ_like Tl 99.2 2.1E-10 4.7E-15 86.2 10.1 74 46-120 22-124 (126)
98 PF08534 Redoxin: Redoxin; In 99.1 4.1E-10 8.9E-15 86.5 10.2 83 46-129 27-144 (146)
99 PTZ00056 glutathione peroxidas 99.1 4.5E-10 9.7E-15 91.3 10.4 90 46-136 38-179 (199)
100 cd02967 mauD Methylamine utili 99.1 1.6E-10 3.5E-15 84.8 6.4 62 47-108 21-103 (114)
101 TIGR01626 ytfJ_HI0045 conserve 99.1 5.9E-10 1.3E-14 89.3 10.0 83 46-130 58-175 (184)
102 KOG0911 Glutaredoxin-related p 99.1 1.8E-10 3.8E-15 93.4 7.0 137 28-171 2-151 (227)
103 PF02114 Phosducin: Phosducin; 99.1 2.5E-10 5.4E-15 96.5 7.1 109 26-135 124-238 (265)
104 PF13899 Thioredoxin_7: Thiore 99.1 7.1E-10 1.5E-14 77.3 8.1 63 45-108 15-81 (82)
105 TIGR02661 MauD methylamine deh 99.1 1.6E-09 3.4E-14 87.4 11.1 87 46-135 73-179 (189)
106 PF13728 TraF: F plasmid trans 99.1 3.2E-09 6.9E-14 87.3 12.5 93 38-131 111-214 (215)
107 PLN02399 phospholipid hydroper 99.1 2.1E-09 4.6E-14 89.4 11.3 89 46-135 98-234 (236)
108 KOG1672 ATP binding protein [P 99.0 8.8E-10 1.9E-14 87.4 7.9 85 25-111 64-148 (211)
109 COG0526 TrxA Thiol-disulfide i 99.0 1.6E-09 3.5E-14 77.5 8.4 83 47-131 32-120 (127)
110 cd02960 AGR Anterior Gradient 99.0 1.1E-09 2.4E-14 82.9 7.2 89 45-134 21-122 (130)
111 PLN02412 probable glutathione 99.0 4.6E-09 9.9E-14 83.0 10.5 90 46-136 28-165 (167)
112 KOG0914 Thioredoxin-like prote 99.0 6.9E-10 1.5E-14 89.6 5.7 83 29-111 126-216 (265)
113 smart00594 UAS UAS domain. 99.0 1.2E-08 2.5E-13 76.6 11.9 87 45-131 25-121 (122)
114 TIGR02540 gpx7 putative glutat 99.0 7.1E-09 1.5E-13 80.5 10.6 88 46-134 21-152 (153)
115 cd02969 PRX_like1 Peroxiredoxi 99.0 1E-08 2.2E-13 81.0 11.4 91 46-137 24-154 (171)
116 cd00340 GSH_Peroxidase Glutath 98.9 6.1E-09 1.3E-13 80.9 9.2 41 46-87 21-63 (152)
117 TIGR02196 GlrX_YruB Glutaredox 98.9 6.3E-09 1.4E-13 69.8 7.8 69 51-132 2-74 (74)
118 cd01659 TRX_superfamily Thiore 98.9 7.5E-09 1.6E-13 66.0 7.8 60 51-110 1-63 (69)
119 TIGR02200 GlrX_actino Glutared 98.9 1.4E-08 3.1E-13 69.0 8.3 70 51-132 2-76 (77)
120 TIGR02739 TraF type-F conjugat 98.9 3.9E-08 8.3E-13 82.6 12.2 98 38-136 141-249 (256)
121 PF14595 Thioredoxin_9: Thiore 98.8 4.2E-08 9E-13 74.4 8.7 81 37-118 31-114 (129)
122 PRK00522 tpx lipid hydroperoxi 98.8 1.3E-07 2.8E-12 74.7 11.6 86 46-132 43-166 (167)
123 KOG0913 Thiol-disulfide isomer 98.8 2.1E-09 4.6E-14 87.6 1.3 100 28-135 25-126 (248)
124 PRK13703 conjugal pilus assemb 98.7 1.7E-07 3.6E-12 78.4 11.9 96 40-136 136-242 (248)
125 PF06110 DUF953: Eukaryotic pr 98.7 1E-07 2.3E-12 71.0 9.5 84 32-116 2-104 (119)
126 cd03014 PRX_Atyp2cys Peroxired 98.7 1.1E-07 2.3E-12 72.7 9.7 72 46-118 25-126 (143)
127 PTZ00256 glutathione peroxidas 98.7 7.7E-08 1.7E-12 77.1 9.1 89 46-135 39-181 (183)
128 PF13192 Thioredoxin_3: Thiore 98.7 1.8E-07 3.9E-12 64.3 9.6 73 52-132 3-76 (76)
129 cd03017 PRX_BCP Peroxiredoxin 98.7 9.4E-08 2E-12 72.5 9.0 84 46-130 22-138 (140)
130 PF00578 AhpC-TSA: AhpC/TSA fa 98.7 1E-07 2.2E-12 70.7 8.8 65 46-110 24-118 (124)
131 cd03015 PRX_Typ2cys Peroxiredo 98.6 3.8E-07 8.3E-12 72.2 10.4 89 46-135 28-157 (173)
132 PRK11200 grxA glutaredoxin 1; 98.6 3.5E-07 7.6E-12 64.0 8.8 76 51-136 3-84 (85)
133 KOG2501 Thioredoxin, nucleored 98.6 9.4E-08 2E-12 74.0 5.7 65 46-110 32-125 (157)
134 TIGR03143 AhpF_homolog putativ 98.6 6.6E-07 1.4E-11 83.4 12.3 142 29-174 348-493 (555)
135 COG2143 Thioredoxin-related pr 98.6 6.2E-07 1.3E-11 69.1 9.6 90 45-135 40-149 (182)
136 KOG3414 Component of the U4/U6 98.6 1E-06 2.2E-11 65.4 10.2 106 30-135 6-120 (142)
137 TIGR03137 AhpC peroxiredoxin. 98.6 8.3E-07 1.8E-11 71.4 10.6 88 46-135 30-156 (187)
138 TIGR02180 GRX_euk Glutaredoxin 98.5 3.3E-07 7.1E-12 63.4 6.4 58 51-111 1-63 (84)
139 cd03018 PRX_AhpE_like Peroxire 98.5 1.5E-06 3.3E-11 66.6 10.0 83 48-131 29-147 (149)
140 cd02991 UAS_ETEA UAS family, E 98.5 6E-06 1.3E-10 61.4 12.8 90 45-136 15-114 (116)
141 cd02970 PRX_like2 Peroxiredoxi 98.5 1.5E-06 3.3E-11 66.3 9.7 43 47-89 24-68 (149)
142 PRK13190 putative peroxiredoxi 98.4 2.2E-06 4.8E-11 69.8 10.4 89 46-135 26-154 (202)
143 TIGR03143 AhpF_homolog putativ 98.4 2.4E-06 5.2E-11 79.6 11.6 79 47-131 475-554 (555)
144 TIGR02183 GRXA Glutaredoxin, G 98.4 1.9E-06 4.2E-11 60.5 8.5 77 51-137 2-84 (86)
145 cd02976 NrdH NrdH-redoxin (Nrd 98.4 1.9E-06 4.2E-11 57.4 7.8 68 51-131 2-73 (73)
146 PRK10382 alkyl hydroperoxide r 98.4 4.9E-06 1.1E-10 67.0 11.4 89 46-135 30-156 (187)
147 PRK09437 bcp thioredoxin-depen 98.4 3.1E-06 6.8E-11 65.5 10.0 75 46-121 29-139 (154)
148 PRK10606 btuE putative glutath 98.4 2.3E-06 5.1E-11 68.6 9.1 41 46-87 24-66 (183)
149 PF03190 Thioredox_DsbH: Prote 98.4 5.1E-06 1.1E-10 65.1 10.7 66 45-110 35-112 (163)
150 PF11009 DUF2847: Protein of u 98.3 1.4E-05 3.1E-10 58.1 11.4 97 30-127 2-104 (105)
151 PRK15317 alkyl hydroperoxide r 98.3 6E-06 1.3E-10 76.3 11.9 83 47-135 116-198 (517)
152 cd02983 P5_C P5 family, C-term 98.3 2.8E-05 6.1E-10 59.0 13.3 111 27-140 2-120 (130)
153 KOG3425 Uncharacterized conser 98.3 3E-06 6.4E-11 62.5 7.1 83 33-115 10-110 (128)
154 PF13848 Thioredoxin_6: Thiore 98.3 3E-05 6.5E-10 61.2 13.6 103 28-133 78-184 (184)
155 PRK15000 peroxidase; Provision 98.3 8.2E-06 1.8E-10 66.4 10.2 89 46-135 33-162 (200)
156 cd02981 PDI_b_family Protein D 98.3 1.5E-05 3.1E-10 56.7 10.4 94 30-133 2-96 (97)
157 KOG3171 Conserved phosducin-li 98.3 2E-06 4.4E-11 69.5 6.3 106 27-135 138-251 (273)
158 cd02971 PRX_family Peroxiredox 98.3 6.1E-06 1.3E-10 62.4 8.7 42 46-87 21-65 (140)
159 cd02968 SCO SCO (an acronym fo 98.3 5.6E-06 1.2E-10 62.8 8.4 42 46-87 21-68 (142)
160 PF01216 Calsequestrin: Calseq 98.3 3.5E-05 7.7E-10 66.6 14.0 130 28-168 35-176 (383)
161 PF02966 DIM1: Mitosis protein 98.2 3.1E-05 6.7E-10 58.2 11.2 104 30-134 3-116 (133)
162 PRK10877 protein disulfide iso 98.2 2.5E-05 5.5E-10 65.0 10.8 81 46-134 106-230 (232)
163 cd03016 PRX_1cys Peroxiredoxin 98.1 2.2E-05 4.7E-10 63.9 9.6 86 49-135 28-154 (203)
164 PRK13189 peroxiredoxin; Provis 98.1 2.3E-05 5E-10 64.8 9.9 89 46-135 34-163 (222)
165 cd03419 GRX_GRXh_1_2_like Glut 98.1 1.9E-05 4.1E-10 54.3 7.9 56 51-111 2-62 (82)
166 TIGR03140 AhpF alkyl hydropero 98.1 4.3E-05 9.2E-10 70.6 11.9 82 47-134 117-198 (515)
167 cd03023 DsbA_Com1_like DsbA fa 98.1 4.7E-05 1E-09 58.0 10.4 39 46-84 4-42 (154)
168 PTZ00137 2-Cys peroxiredoxin; 98.1 4.8E-05 1.1E-09 64.3 10.9 88 46-135 97-225 (261)
169 PRK13599 putative peroxiredoxi 98.0 4.3E-05 9.4E-10 62.9 9.7 89 46-134 27-155 (215)
170 PRK13191 putative peroxiredoxi 98.0 6E-05 1.3E-09 62.0 9.8 89 46-135 32-161 (215)
171 TIGR02190 GlrX-dom Glutaredoxi 98.0 4.9E-05 1.1E-09 52.4 7.8 58 47-111 6-66 (79)
172 cd03020 DsbA_DsbC_DsbG DsbA fa 98.0 5.8E-05 1.3E-09 61.0 9.0 77 46-131 76-197 (197)
173 PF00462 Glutaredoxin: Glutare 97.9 5.4E-05 1.2E-09 49.2 7.1 54 51-111 1-58 (60)
174 PTZ00253 tryparedoxin peroxida 97.9 0.00011 2.4E-09 59.6 10.5 89 46-135 35-164 (199)
175 PRK11657 dsbG disulfide isomer 97.9 0.0002 4.4E-09 60.3 11.2 84 46-132 116-249 (251)
176 KOG3170 Conserved phosducin-li 97.9 0.00016 3.4E-09 58.1 9.8 106 27-135 91-201 (240)
177 PF05768 DUF836: Glutaredoxin- 97.9 5.8E-05 1.3E-09 52.3 6.4 80 51-132 2-81 (81)
178 PRK10329 glutaredoxin-like pro 97.8 0.00024 5.1E-09 49.4 9.2 72 51-135 3-77 (81)
179 cd02066 GRX_family Glutaredoxi 97.8 7.8E-05 1.7E-09 49.1 6.3 54 51-111 2-59 (72)
180 TIGR02194 GlrX_NrdH Glutaredox 97.7 0.00014 3E-09 49.1 6.5 66 52-129 2-70 (72)
181 TIGR02189 GlrX-like_plant Glut 97.7 0.00011 2.4E-09 53.1 6.3 54 51-111 10-70 (99)
182 PF07912 ERp29_N: ERp29, N-ter 97.7 0.003 6.5E-08 47.1 13.9 105 28-138 5-122 (126)
183 PF13462 Thioredoxin_4: Thiore 97.7 0.00066 1.4E-08 52.4 10.9 81 46-133 11-162 (162)
184 PHA03050 glutaredoxin; Provisi 97.7 0.00015 3.2E-09 53.2 6.7 59 51-111 15-78 (108)
185 cd03029 GRX_hybridPRX5 Glutare 97.7 0.00032 6.9E-09 47.2 7.8 66 51-131 3-71 (72)
186 PF13848 Thioredoxin_6: Thiore 97.6 0.00084 1.8E-08 52.8 10.4 87 64-160 7-95 (184)
187 TIGR02181 GRX_bact Glutaredoxi 97.6 0.0002 4.3E-09 49.0 5.7 54 51-111 1-58 (79)
188 cd03067 PDI_b_PDIR_N PDIb fami 97.6 0.00091 2E-08 48.0 8.9 100 29-133 3-110 (112)
189 cd03418 GRX_GRXb_1_3_like Glut 97.6 0.00041 8.9E-09 46.7 7.0 54 51-111 2-60 (75)
190 cd03027 GRX_DEP Glutaredoxin ( 97.6 0.00046 1E-08 46.5 7.1 54 51-111 3-60 (73)
191 cd03072 PDI_b'_ERp44 PDIb' fam 97.5 0.0016 3.4E-08 48.0 10.1 89 46-136 15-109 (111)
192 cd03019 DsbA_DsbA DsbA family, 97.5 0.0011 2.4E-08 52.0 9.4 37 46-82 14-51 (178)
193 PF07449 HyaE: Hydrogenase-1 e 97.5 0.00081 1.8E-08 49.2 7.8 92 29-125 11-105 (107)
194 cd02972 DsbA_family DsbA famil 97.4 0.00057 1.2E-08 47.4 6.5 58 51-108 1-91 (98)
195 cd03073 PDI_b'_ERp72_ERp57 PDI 97.4 0.002 4.4E-08 47.4 9.5 75 58-134 29-110 (111)
196 PRK15317 alkyl hydroperoxide r 97.4 0.0021 4.5E-08 59.5 11.6 123 36-174 8-133 (517)
197 PRK10954 periplasmic protein d 97.2 0.0023 5E-08 52.2 9.0 39 47-85 37-79 (207)
198 TIGR03140 AhpF alkyl hydropero 97.2 0.0046 9.9E-08 57.2 11.8 124 36-174 8-134 (515)
199 PF00837 T4_deiodinase: Iodoth 97.2 0.0029 6.3E-08 52.4 9.3 61 23-85 78-141 (237)
200 KOG2603 Oligosaccharyltransfer 97.2 0.0025 5.5E-08 54.5 9.0 109 27-137 40-168 (331)
201 COG0695 GrxC Glutaredoxin and 97.1 0.0017 3.8E-08 44.9 6.2 66 51-128 3-74 (80)
202 TIGR00365 monothiol glutaredox 97.1 0.0047 1E-07 44.3 8.2 48 57-111 25-76 (97)
203 PRK10638 glutaredoxin 3; Provi 97.1 0.0023 4.9E-08 44.3 6.3 54 51-111 4-61 (83)
204 cd03069 PDI_b_ERp57 PDIb famil 96.9 0.018 3.9E-07 41.6 10.3 95 29-134 2-103 (104)
205 cd03066 PDI_b_Calsequestrin_mi 96.9 0.03 6.6E-07 40.2 11.1 98 29-134 2-100 (102)
206 cd03028 GRX_PICOT_like Glutare 96.8 0.0048 1E-07 43.5 6.2 48 57-111 21-72 (90)
207 PRK10824 glutaredoxin-4; Provi 96.6 0.01 2.2E-07 44.0 7.1 48 57-111 28-79 (115)
208 KOG2640 Thioredoxin [Function 96.3 0.0018 3.9E-08 55.4 1.5 121 38-171 67-188 (319)
209 PF13743 Thioredoxin_5: Thiore 96.2 0.025 5.5E-07 44.9 7.7 29 53-81 2-31 (176)
210 PRK12759 bifunctional gluaredo 96.2 0.014 3.1E-07 52.6 6.7 54 51-111 4-69 (410)
211 cd02974 AhpF_NTD_N Alkyl hydro 96.1 0.22 4.7E-06 35.5 11.2 85 36-133 8-92 (94)
212 PTZ00062 glutaredoxin; Provisi 96.0 0.035 7.5E-07 45.3 7.8 49 56-111 125-177 (204)
213 KOG1752 Glutaredoxin and relat 95.9 0.069 1.5E-06 38.9 7.8 56 51-111 16-76 (104)
214 COG1225 Bcp Peroxiredoxin [Pos 95.8 0.19 4.1E-06 39.3 10.5 89 45-134 28-155 (157)
215 COG1331 Highly conserved prote 95.7 0.042 9.2E-07 51.8 7.6 73 36-110 34-118 (667)
216 cd03068 PDI_b_ERp72 PDIb famil 95.4 0.63 1.4E-05 33.8 11.5 97 29-134 2-107 (107)
217 PF01323 DSBA: DSBA-like thior 95.0 0.37 8.1E-06 37.9 10.3 32 50-81 1-32 (193)
218 cd03013 PRX5_like Peroxiredoxi 94.9 0.052 1.1E-06 42.2 4.8 51 48-98 31-88 (155)
219 cd03040 GST_N_mPGES2 GST_N fam 94.7 0.19 4.2E-06 33.6 6.8 76 51-136 2-77 (77)
220 PHA03075 glutaredoxin-like pro 93.4 0.14 3.1E-06 37.7 4.2 36 48-86 2-37 (123)
221 cd02978 KaiB_like KaiB-like fa 93.4 0.39 8.4E-06 32.5 6.0 57 50-106 3-61 (72)
222 cd03060 GST_N_Omega_like GST_N 93.0 0.38 8.2E-06 31.7 5.7 51 52-105 2-53 (71)
223 cd03031 GRX_GRX_like Glutaredo 93.0 0.46 1E-05 36.7 6.8 54 51-111 2-69 (147)
224 PF13417 GST_N_3: Glutathione 92.7 1.3 2.7E-05 29.6 7.9 72 53-137 1-73 (75)
225 cd03041 GST_N_2GST_N GST_N fam 92.6 1.2 2.6E-05 29.9 7.8 71 51-134 2-76 (77)
226 cd03037 GST_N_GRX2 GST_N famil 92.6 0.45 9.7E-06 31.3 5.5 50 53-105 3-52 (71)
227 cd03036 ArsC_like Arsenate Red 92.1 0.14 2.9E-06 37.6 2.7 52 52-108 2-57 (111)
228 PRK09301 circadian clock prote 91.2 0.76 1.7E-05 33.3 5.7 62 46-107 4-67 (103)
229 TIGR02654 circ_KaiB circadian 91.1 0.86 1.9E-05 32.0 5.7 60 48-107 3-64 (87)
230 cd02977 ArsC_family Arsenate R 91.0 0.28 6.1E-06 35.3 3.4 32 52-88 2-33 (105)
231 TIGR01617 arsC_related transcr 90.1 0.66 1.4E-05 34.1 4.8 34 52-90 2-35 (117)
232 cd03051 GST_N_GTT2_like GST_N 89.7 1.1 2.5E-05 29.1 5.3 52 52-106 2-57 (74)
233 COG3634 AhpF Alkyl hydroperoxi 89.7 2.4 5.1E-05 37.7 8.4 92 36-133 105-196 (520)
234 PF09673 TrbC_Ftype: Type-F co 89.3 4.5 9.8E-05 29.7 8.6 23 87-109 58-80 (113)
235 PF06053 DUF929: Domain of unk 89.3 1.1 2.4E-05 37.6 5.9 69 28-109 45-114 (249)
236 COG2761 FrnE Predicted dithiol 89.0 1.3 2.8E-05 36.7 6.1 43 91-139 175-217 (225)
237 cd02994 PDI_a_TMX PDIa family, 88.9 0.2 4.3E-06 35.3 1.1 32 144-175 3-34 (101)
238 KOG2792 Putative cytochrome C 88.6 2 4.4E-05 36.2 7.0 91 46-136 138-276 (280)
239 cd00570 GST_N_family Glutathio 88.5 0.53 1.1E-05 29.8 2.9 51 52-105 2-54 (71)
240 PRK01655 spxA transcriptional 88.2 0.96 2.1E-05 34.1 4.5 35 51-90 2-36 (131)
241 cd03035 ArsC_Yffb Arsenate Red 87.7 0.78 1.7E-05 33.2 3.6 33 52-89 2-34 (105)
242 cd03003 PDI_a_ERdj5_N PDIa fam 87.2 0.43 9.2E-06 33.7 2.0 32 144-175 3-36 (101)
243 cd03004 PDI_a_ERdj5_C PDIa fam 86.0 0.57 1.2E-05 33.1 2.1 31 144-174 3-36 (104)
244 cd03045 GST_N_Delta_Epsilon GS 85.9 2.5 5.5E-05 27.6 5.2 51 52-105 2-56 (74)
245 COG0278 Glutaredoxin-related p 85.9 2.1 4.5E-05 30.9 4.8 52 56-111 27-80 (105)
246 KOG2507 Ubiquitin regulatory p 85.8 8.4 0.00018 34.9 9.5 90 45-135 16-111 (506)
247 KOG0910 Thioredoxin-like prote 85.1 0.9 2E-05 35.2 2.9 34 142-175 43-79 (150)
248 cd03002 PDI_a_MPD1_like PDI fa 85.0 0.55 1.2E-05 33.4 1.6 32 144-175 2-36 (109)
249 cd03006 PDI_a_EFP1_N PDIa fami 84.9 0.4 8.6E-06 35.3 0.8 33 143-175 10-47 (113)
250 PHA02278 thioredoxin-like prot 84.8 0.8 1.7E-05 33.0 2.4 29 148-176 3-33 (103)
251 TIGR02742 TrbC_Ftype type-F co 84.7 4.6 0.0001 30.5 6.5 47 88-135 59-115 (130)
252 cd03032 ArsC_Spx Arsenate Redu 84.4 2.4 5.1E-05 31.0 4.8 34 51-89 2-35 (115)
253 cd03059 GST_N_SspA GST_N famil 84.2 2.6 5.6E-05 27.5 4.5 51 52-105 2-53 (73)
254 cd02995 PDI_a_PDI_a'_C PDIa fa 83.9 0.51 1.1E-05 33.0 1.0 32 144-175 2-36 (104)
255 PRK12559 transcriptional regul 83.7 2 4.4E-05 32.4 4.2 33 51-88 2-34 (131)
256 PF09822 ABC_transp_aux: ABC-t 82.9 27 0.00058 29.3 12.4 97 40-137 18-144 (271)
257 cd03074 PDI_b'_Calsequestrin_C 82.8 16 0.00035 26.8 11.1 93 43-135 16-120 (120)
258 cd02996 PDI_a_ERp44 PDIa famil 82.8 0.82 1.8E-05 32.7 1.8 32 144-175 3-36 (108)
259 cd02948 TRX_NDPK TRX domain, T 80.7 1.2 2.6E-05 31.6 2.0 28 148-175 6-35 (102)
260 cd03055 GST_N_Omega GST_N fami 80.5 6.1 0.00013 27.2 5.5 53 51-106 19-72 (89)
261 cd03005 PDI_a_ERp46 PDIa famil 80.4 1.2 2.5E-05 31.1 1.8 30 145-174 3-33 (102)
262 PF04592 SelP_N: Selenoprotein 79.3 3.9 8.5E-05 34.0 4.7 47 41-87 20-71 (238)
263 COG3531 Predicted protein-disu 79.0 3.5 7.5E-05 33.5 4.2 46 90-135 164-209 (212)
264 KOG1422 Intracellular Cl- chan 78.5 15 0.00034 30.1 7.8 69 58-138 20-88 (221)
265 PF07689 KaiB: KaiB domain; I 78.5 0.7 1.5E-05 32.1 0.1 52 54-105 3-56 (82)
266 COG1651 DsbG Protein-disulfide 78.0 4.2 9.2E-05 33.5 4.7 38 47-84 84-121 (244)
267 cd03007 PDI_a_ERp29_N PDIa fam 77.7 1.9 4E-05 32.0 2.2 27 144-170 3-33 (116)
268 PF00085 Thioredoxin: Thioredo 77.7 0.59 1.3E-05 32.5 -0.5 30 145-174 2-34 (103)
269 cd02992 PDI_a_QSOX PDIa family 77.5 1.5 3.1E-05 32.0 1.6 32 144-175 3-37 (114)
270 PF02630 SCO1-SenC: SCO1/SenC; 77.4 5.5 0.00012 31.3 5.0 51 46-96 51-109 (174)
271 cd02957 Phd_like Phosducin (Ph 77.1 1.6 3.4E-05 31.7 1.7 33 143-175 5-42 (113)
272 cd02993 PDI_a_APS_reductase PD 77.0 1.4 3E-05 31.7 1.4 32 144-175 3-39 (109)
273 PRK13344 spxA transcriptional 76.1 5 0.00011 30.3 4.3 33 51-88 2-34 (132)
274 COG4545 Glutaredoxin-related p 75.6 6.6 0.00014 26.8 4.2 54 52-111 5-74 (85)
275 cd03052 GST_N_GDAP1 GST_N fami 75.5 13 0.00029 24.5 5.8 54 52-110 2-59 (73)
276 PF06764 DUF1223: Protein of u 75.1 44 0.00095 27.2 9.8 81 51-137 2-100 (202)
277 COG3019 Predicted metal-bindin 73.7 10 0.00022 29.1 5.3 75 49-135 26-104 (149)
278 cd02997 PDI_a_PDIR PDIa family 73.3 2.1 4.5E-05 29.8 1.5 30 145-174 3-34 (104)
279 cd02989 Phd_like_TxnDC9 Phosdu 73.1 2.7 5.8E-05 30.6 2.0 26 150-175 13-40 (113)
280 PF04134 DUF393: Protein of un 72.9 5.7 0.00012 28.6 3.8 57 54-111 2-61 (114)
281 cd03056 GST_N_4 GST_N family, 72.9 13 0.00027 23.9 5.2 52 52-106 2-57 (73)
282 cd03024 DsbA_FrnE DsbA family, 72.6 4.9 0.00011 31.8 3.6 37 89-131 164-200 (201)
283 COG1999 Uncharacterized protei 72.5 21 0.00045 29.1 7.3 53 46-98 66-127 (207)
284 cd03001 PDI_a_P5 PDIa family, 72.0 2.3 5E-05 29.6 1.4 31 145-175 3-36 (103)
285 cd03065 PDI_b_Calsequestrin_N 70.8 5.5 0.00012 29.6 3.3 30 141-170 8-39 (120)
286 cd02985 TRX_CDSP32 TRX family, 70.7 3.3 7.1E-05 29.4 2.0 28 148-175 2-33 (103)
287 cd02987 Phd_like_Phd Phosducin 69.1 5.6 0.00012 31.5 3.2 38 138-175 58-101 (175)
288 cd03025 DsbA_FrnE_like DsbA fa 68.5 7.3 0.00016 30.5 3.8 27 51-77 3-29 (193)
289 cd02962 TMX2 TMX2 family; comp 65.9 7.8 0.00017 30.0 3.3 34 142-175 28-65 (152)
290 TIGR01295 PedC_BrcD bacterioci 63.9 6.2 0.00013 29.2 2.4 32 144-175 8-41 (122)
291 cd02963 TRX_DnaJ TRX domain, D 63.8 4.7 0.0001 29.1 1.7 29 146-174 8-41 (111)
292 cd02953 DsbDgamma DsbD gamma f 63.5 4 8.6E-05 28.7 1.2 26 150-175 2-29 (104)
293 PF05673 DUF815: Protein of un 63.5 11 0.00024 31.7 4.0 80 50-136 54-136 (249)
294 KOG0911 Glutaredoxin-related p 63.4 32 0.00069 28.5 6.5 51 56-111 151-203 (227)
295 cd02998 PDI_a_ERp38 PDIa famil 62.3 4.3 9.4E-05 28.1 1.2 29 146-174 4-35 (105)
296 cd03022 DsbA_HCCA_Iso DsbA fam 60.4 11 0.00024 29.4 3.4 39 86-131 153-191 (192)
297 cd02961 PDI_a_family Protein D 60.3 7.8 0.00017 26.1 2.3 30 146-175 2-33 (101)
298 PTZ00051 thioredoxin; Provisio 59.9 7.7 0.00017 26.7 2.2 27 148-174 7-35 (98)
299 PTZ00443 Thioredoxin domain-co 59.8 5.1 0.00011 33.1 1.4 33 143-175 31-70 (224)
300 TIGR01126 pdi_dom protein disu 59.4 7.2 0.00016 26.8 2.0 27 148-174 2-30 (102)
301 PF06491 Disulph_isomer: Disul 59.3 76 0.0017 24.1 9.4 107 23-134 12-131 (136)
302 COG0450 AhpC Peroxiredoxin [Po 58.7 97 0.0021 25.1 8.9 89 47-135 33-161 (194)
303 PRK09381 trxA thioredoxin; Pro 57.9 6.8 0.00015 27.7 1.7 31 144-174 5-38 (109)
304 cd02990 UAS_FAF1 UAS family, F 57.9 81 0.0018 24.0 11.3 88 46-135 20-133 (136)
305 PRK10996 thioredoxin 2; Provis 57.8 11 0.00025 28.3 3.0 32 144-175 37-70 (139)
306 PRK13730 conjugal transfer pil 57.5 25 0.00055 28.7 4.9 42 89-133 151-192 (212)
307 PLN02309 5'-adenylylsulfate re 55.9 7.6 0.00017 35.7 2.0 34 142-175 345-383 (457)
308 cd03053 GST_N_Phi GST_N family 55.6 43 0.00093 21.7 5.3 52 51-105 2-57 (76)
309 TIGR00424 APS_reduc 5'-adenyly 54.5 8.3 0.00018 35.5 2.0 33 143-175 352-389 (463)
310 cd03025 DsbA_FrnE_like DsbA fa 54.1 12 0.00025 29.4 2.6 22 90-111 159-180 (193)
311 PF01216 Calsequestrin: Calseq 54.1 1.6E+02 0.0035 26.2 12.7 117 25-155 144-262 (383)
312 cd03033 ArsC_15kD Arsenate Red 52.9 19 0.00041 26.3 3.4 33 51-88 2-34 (113)
313 TIGR00014 arsC arsenate reduct 52.9 20 0.00043 26.1 3.5 32 52-88 2-33 (114)
314 PRK09481 sspA stringent starva 51.7 85 0.0018 25.0 7.4 78 47-137 7-85 (211)
315 PF08806 Sep15_SelM: Sep15/Sel 51.6 23 0.00049 24.2 3.3 36 100-135 41-76 (78)
316 cd03021 DsbA_GSTK DsbA family, 50.8 20 0.00044 28.8 3.5 39 91-131 170-208 (209)
317 cd03034 ArsC_ArsC Arsenate Red 50.4 23 0.00051 25.6 3.5 32 52-88 2-33 (112)
318 COG1651 DsbG Protein-disulfide 48.8 20 0.00043 29.4 3.2 39 89-134 204-242 (244)
319 cd03058 GST_N_Tau GST_N family 48.5 72 0.0016 20.5 6.5 50 53-105 3-54 (74)
320 KOG4277 Uncharacterized conser 47.8 1.6E+02 0.0034 25.9 8.4 93 30-135 137-231 (468)
321 cd03061 GST_N_CLIC GST_N famil 47.7 96 0.0021 21.8 6.6 68 56-136 19-87 (91)
322 PRK10387 glutaredoxin 2; Provi 47.7 87 0.0019 24.6 6.8 73 53-137 3-75 (210)
323 PF00255 GSHPx: Glutathione pe 46.6 51 0.0011 24.0 4.7 64 45-109 19-92 (108)
324 COG5429 Uncharacterized secret 45.9 63 0.0014 27.1 5.6 82 48-135 42-141 (261)
325 cd03049 GST_N_3 GST_N family, 43.1 61 0.0013 20.8 4.4 53 53-106 3-56 (73)
326 COG1393 ArsC Arsenate reductas 41.2 35 0.00077 25.1 3.2 22 51-72 3-24 (117)
327 PF06953 ArsD: Arsenical resis 40.5 1.5E+02 0.0033 22.1 7.1 62 67-135 31-102 (123)
328 cd03054 GST_N_Metaxin GST_N fa 40.4 98 0.0021 19.8 6.3 41 56-105 13-53 (72)
329 KOG0912 Thiol-disulfide isomer 39.8 1.4E+02 0.003 26.2 6.9 126 27-169 108-239 (375)
330 COG3118 Thioredoxin domain-con 39.1 16 0.00035 31.5 1.3 30 144-173 25-59 (304)
331 cd03038 GST_N_etherase_LigE GS 38.8 82 0.0018 20.9 4.6 67 56-134 13-82 (84)
332 PF03960 ArsC: ArsC family; I 38.6 65 0.0014 23.0 4.3 31 54-89 1-31 (110)
333 COG2607 Predicted ATPase (AAA+ 38.3 94 0.002 26.5 5.6 80 50-136 87-169 (287)
334 cd02988 Phd_like_VIAF Phosduci 36.8 24 0.00051 28.4 1.8 36 140-175 80-120 (192)
335 cd00307 RuBisCO_small_like Rib 35.5 36 0.00078 23.7 2.3 34 54-87 28-71 (84)
336 PRK10853 putative reductase; P 34.2 56 0.0012 24.0 3.4 33 51-88 2-34 (118)
337 TIGR02182 GRXB Glutaredoxin, G 33.9 1.7E+02 0.0037 23.3 6.5 71 54-136 3-73 (209)
338 KOG0852 Alkyl hydroperoxide re 33.8 2.5E+02 0.0055 22.6 8.2 90 45-134 31-160 (196)
339 PF02702 KdpD: Osmosensitive K 33.1 2.8E+02 0.006 22.8 7.6 66 46-111 3-69 (211)
340 cd03044 GST_N_EF1Bgamma GST_N 32.5 1.4E+02 0.003 19.3 4.9 51 53-106 3-56 (75)
341 KOG4079 Putative mitochondrial 31.0 55 0.0012 25.0 2.8 59 99-163 72-130 (169)
342 COG0278 Glutaredoxin-related p 30.4 63 0.0014 23.4 2.9 23 149-171 5-27 (105)
343 PF14424 Toxin-deaminase: The 30.3 2.3E+02 0.0051 21.3 6.2 31 52-85 99-131 (133)
344 TIGR01616 nitro_assoc nitrogen 30.3 87 0.0019 23.3 3.9 32 51-87 3-34 (126)
345 PRK10026 arsenate reductase; P 29.8 84 0.0018 24.0 3.8 32 51-87 4-35 (141)
346 COG0386 BtuE Glutathione perox 29.7 2.8E+02 0.006 21.8 10.0 43 44-87 22-66 (162)
347 PF07315 DUF1462: Protein of u 29.1 2.1E+02 0.0046 20.2 5.7 69 58-132 8-93 (93)
348 COG1999 Uncharacterized protei 29.0 2.6E+02 0.0056 22.6 6.8 57 79-136 134-205 (207)
349 KOG1364 Predicted ubiquitin re 29.0 70 0.0015 28.3 3.5 57 79-135 133-189 (356)
350 PF11287 DUF3088: Protein of u 28.5 99 0.0022 22.7 3.7 52 58-109 23-77 (112)
351 PF00403 HMA: Heavy-metal-asso 27.5 1.4E+02 0.003 18.5 4.0 33 54-89 4-36 (62)
352 KOG2868 Decapping enzyme compl 27.1 1.8E+02 0.0039 25.5 5.6 38 98-135 92-130 (335)
353 COG2077 Tpx Peroxiredoxin [Pos 26.9 2E+02 0.0044 22.4 5.3 63 46-108 44-109 (158)
354 TIGR03439 methyl_EasF probable 26.7 4E+02 0.0087 23.2 7.9 85 47-134 76-182 (319)
355 TIGR00762 DegV EDD domain prot 26.0 2.7E+02 0.0058 23.4 6.6 44 87-134 10-53 (275)
356 KOG1651 Glutathione peroxidase 25.8 2E+02 0.0043 22.8 5.2 113 45-169 32-156 (171)
357 PRK11752 putative S-transferas 24.5 2.8E+02 0.0061 23.1 6.4 55 52-106 45-106 (264)
358 PF07700 HNOB: Heme NO binding 24.3 1.9E+02 0.0042 22.3 5.1 42 46-87 126-169 (171)
359 COG3411 Ferredoxin [Energy pro 23.9 1.2E+02 0.0026 20.0 3.1 31 100-136 16-46 (64)
360 cd03050 GST_N_Theta GST_N fami 23.2 2.1E+02 0.0046 18.3 5.3 51 52-105 2-56 (76)
361 cd03042 GST_N_Zeta GST_N famil 22.6 2.1E+02 0.0045 17.9 4.9 49 54-105 4-56 (73)
362 cd03030 GRX_SH3BGR Glutaredoxi 21.5 2.7E+02 0.0058 19.4 4.8 17 78-94 30-46 (92)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.2e-23 Score=160.58 Aligned_cols=107 Identities=18% Similarity=0.380 Sum_probs=96.8
Q ss_pred cCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830 27 RLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 27 ~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~ 105 (218)
.....+.+..+|++.+.+ ++.+|+|+|||+||++|+.+.|.++++..+|.| ++|++||.|++.+++.+|+|..+||++
T Consensus 42 ~~~~~~~s~~~~~~~Vi~-S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvl 120 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVIN-SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVL 120 (150)
T ss_pred cccccccCHHHHHHHHHc-cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEE
Confidence 346677888899999986 899999999999999999999999999999987 999999999999999999999999999
Q ss_pred EEeCCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830 106 FYRGAHGRVCSFSCTNATIKKFKDALAKHTP 136 (218)
Q Consensus 106 l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~ 136 (218)
+|++|+ ....+. |..+.+.|.++|++.+.
T Consensus 121 vfknGe-~~d~~v-G~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 121 VFKNGE-KVDRFV-GAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEECCE-Eeeeec-ccCCHHHHHHHHHHHhc
Confidence 999996 444555 89999999999998764
No 2
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.89 E-value=2.4e-22 Score=149.10 Aligned_cols=102 Identities=14% Similarity=0.192 Sum_probs=87.1
Q ss_pred cCcEEecChhhHHHHHH-hcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHH-HHCCCCcCCE
Q 027830 27 RLALELGRHKDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMC-YSLNVHVLPF 103 (218)
Q Consensus 27 ~~v~~i~s~~~~~~~l~-~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~-~~~~I~~~Pt 103 (218)
.++.++++. +|.+.+. ..++++++|+|||+||++|+.+.|.|+++++.+.+ +.|++|||+.+.++| ++|+|.++||
T Consensus 9 ~~v~~l~~~-~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 9 SPVLDFYKG-QLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCeEEechh-hhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence 567777765 5555421 34799999999999999999999999999999987 899999999999999 5899999999
Q ss_pred EEEEeCCCeeEEEEecCccCHHHHHHHH
Q 027830 104 FRFYRGAHGRVCSFSCTNATIKKFKDAL 131 (218)
Q Consensus 104 i~l~~~g~~~~~~~~~g~~~~~~l~~~l 131 (218)
+++|++|. ....+. |.++.+.|..|+
T Consensus 88 l~lf~~g~-~~~~y~-G~~~~~~i~~~~ 113 (113)
T cd03006 88 IHLYYRSR-GPIEYK-GPMRAPYMEKFV 113 (113)
T ss_pred EEEEECCc-cceEEe-CCCCHHHHHhhC
Confidence 99999986 456666 899999998873
No 3
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.89 E-value=8.2e-22 Score=142.26 Aligned_cols=98 Identities=27% Similarity=0.531 Sum_probs=88.9
Q ss_pred ChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC-CcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCe
Q 027830 34 RHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG 112 (218)
Q Consensus 34 s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~-~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~ 112 (218)
+.++|.+.+.+ ++++++|+||++||++|+.+.|.|.++++.+. ++.|+.||+++++.++++|+|.++||+++|++|+
T Consensus 5 t~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~- 82 (103)
T PF00085_consen 5 TDENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGK- 82 (103)
T ss_dssp STTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTE-
T ss_pred CHHHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCc-
Confidence 44678888865 68999999999999999999999999999998 6999999999999999999999999999999996
Q ss_pred eEEEEecCccCHHHHHHHHHhh
Q 027830 113 RVCSFSCTNATIKKFKDALAKH 134 (218)
Q Consensus 113 ~~~~~~~g~~~~~~l~~~l~~~ 134 (218)
....+. |.++.++|.+||++|
T Consensus 83 ~~~~~~-g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 83 EVKRYN-GPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEEEE-SSSSHHHHHHHHHHH
T ss_pred EEEEEE-CCCCHHHHHHHHHcC
Confidence 445555 889999999999986
No 4
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.88 E-value=3.3e-22 Score=145.36 Aligned_cols=93 Identities=13% Similarity=0.241 Sum_probs=84.0
Q ss_pred hhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCc-CcHHHHHHCCCCcCCEEEEEeCCCeeE
Q 027830 36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-EHKSMCYSLNVHVLPFFRFYRGAHGRV 114 (218)
Q Consensus 36 ~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~-~~~~l~~~~~I~~~Pti~l~~~g~~~~ 114 (218)
+.+.+++...++++++|+|||+||++|+.+.|.|+++++.++++.++.||++ +++.++++|+|.++||+++|++| .+
T Consensus 7 ~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~~ 84 (100)
T cd02999 7 NIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--PR 84 (100)
T ss_pred hHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--ce
Confidence 4566777777899999999999999999999999999999999999999999 89999999999999999999887 35
Q ss_pred EEEecCccCHHHHHHHH
Q 027830 115 CSFSCTNATIKKFKDAL 131 (218)
Q Consensus 115 ~~~~~g~~~~~~l~~~l 131 (218)
..+. |.++.++|.+||
T Consensus 85 ~~~~-G~~~~~~l~~f~ 100 (100)
T cd02999 85 VRYN-GTRTLDSLAAFY 100 (100)
T ss_pred eEec-CCCCHHHHHhhC
Confidence 6666 899999999885
No 5
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.88 E-value=4.8e-22 Score=144.79 Aligned_cols=101 Identities=24% Similarity=0.453 Sum_probs=86.3
Q ss_pred CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEE
Q 027830 28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF 106 (218)
Q Consensus 28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l 106 (218)
++.+++ .++|.+.+.+ ++++++|+|||+||++|+.+.|.|+++++++.+ +.|++|||++++++|++|+|.++||+++
T Consensus 2 ~v~~l~-~~~f~~~i~~-~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLT-PEDFPELVLN-RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcC-HHHHHHHHhc-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 455664 4578887765 677999999999999999999999999999865 9999999999999999999999999999
Q ss_pred EeCCCeeEEEEecCccC-HHHHHHHH
Q 027830 107 YRGAHGRVCSFSCTNAT-IKKFKDAL 131 (218)
Q Consensus 107 ~~~g~~~~~~~~~g~~~-~~~l~~~l 131 (218)
|++|...+..+. |..+ .++|.+||
T Consensus 80 ~~~g~~~~~~~~-G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGNASKYHSYN-GWHRDADSILEFI 104 (104)
T ss_pred EcCCCCCceEcc-CCCCCHHHHHhhC
Confidence 998843555665 7776 99998875
No 6
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.88 E-value=2e-21 Score=141.81 Aligned_cols=97 Identities=24% Similarity=0.387 Sum_probs=83.7
Q ss_pred ChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH---HHHHHCCCCcCCEEEEEeCC
Q 027830 34 RHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK---SMCYSLNVHVLPFFRFYRGA 110 (218)
Q Consensus 34 s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~---~l~~~~~I~~~Pti~l~~~g 110 (218)
+.++|.+.+.+..+++++|+|||+||++|+.+.|.|++++++++++.|+.||++++. +++++|+|.++||++||++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G 81 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG 81 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC
Confidence 567899999876799999999999999999999999999999977999999999874 89999999999999999988
Q ss_pred CeeEEEEecCccCHHHHHHHHHh
Q 027830 111 HGRVCSFSCTNATIKKFKDALAK 133 (218)
Q Consensus 111 ~~~~~~~~~g~~~~~~l~~~l~~ 133 (218)
+ .+..+. +...++|.+.+.+
T Consensus 82 ~-~v~~~~--G~~~~~l~~~~~~ 101 (103)
T cd02985 82 E-KIHEEE--GIGPDELIGDVLY 101 (103)
T ss_pred e-EEEEEe--CCCHHHHHHHHHh
Confidence 6 333343 4677888877754
No 7
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.88 E-value=9e-22 Score=142.78 Aligned_cols=98 Identities=17% Similarity=0.344 Sum_probs=85.4
Q ss_pred CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEE
Q 027830 28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF 106 (218)
Q Consensus 28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l 106 (218)
++++++ .++|.+.+. .+++++|+|||+||++|+.+.|.|+++++.+.+ +.|++|||++++.+|++|+|.++||+++
T Consensus 2 ~~~~l~-~~~f~~~v~--~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLD-RGDFDAAVN--SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcC-HhhHHHHhc--CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 456665 457888774 468999999999999999999999999999976 8999999999999999999999999999
Q ss_pred EeCCCeeEEEEecCccCHHHHHHH
Q 027830 107 YRGAHGRVCSFSCTNATIKKFKDA 130 (218)
Q Consensus 107 ~~~g~~~~~~~~~g~~~~~~l~~~ 130 (218)
|++|+ .+..+. |.++.+.|.+|
T Consensus 79 ~~~g~-~~~~~~-G~~~~~~l~~f 100 (101)
T cd03003 79 FPSGM-NPEKYY-GDRSKESLVKF 100 (101)
T ss_pred EcCCC-CcccCC-CCCCHHHHHhh
Confidence 99886 444555 88999998876
No 8
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.87 E-value=6.7e-22 Score=146.21 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=72.1
Q ss_pred hhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCC
Q 027830 35 HKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 35 ~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~ 111 (218)
.++|.+.+....+++++|+|||+||++|+.+.|.++++++++++ +.|++||++++++++.+|+|.++||+++|++|+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 46788888765789999999999999999999999999999998 799999999999999999999999999999986
No 9
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.3e-21 Score=142.01 Aligned_cols=94 Identities=45% Similarity=0.729 Sum_probs=80.4
Q ss_pred HHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEE
Q 027830 38 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSF 117 (218)
Q Consensus 38 ~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~ 117 (218)
+.......++++++|+|||+||++|+.+.|.+.+|+.+|+++.|++||+|+..++++.++|..+|||+||++|+ ++..+
T Consensus 12 ~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~-~~~~~ 90 (106)
T KOG0907|consen 12 LVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGE-EVDEV 90 (106)
T ss_pred HHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCE-EEEEE
Confidence 33334444679999999999999999999999999999999999999999999999999999999999999996 45555
Q ss_pred ecCccCHHHHHHHHHhh
Q 027830 118 SCTNATIKKFKDALAKH 134 (218)
Q Consensus 118 ~~g~~~~~~l~~~l~~~ 134 (218)
. +.+.+++.+.|.++
T Consensus 91 v--Ga~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 91 V--GANKAELEKKIAKH 105 (106)
T ss_pred e--cCCHHHHHHHHHhc
Confidence 5 45566888877654
No 10
>PHA02278 thioredoxin-like protein
Probab=99.87 E-value=2.8e-21 Score=141.12 Aligned_cols=94 Identities=17% Similarity=0.256 Sum_probs=80.2
Q ss_pred cChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC-CcEEEEEeCcCc----HHHHHHCCCCcCCEEEEE
Q 027830 33 GRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEH----KSMCYSLNVHVLPFFRFY 107 (218)
Q Consensus 33 ~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~-~v~~~~Vd~~~~----~~l~~~~~I~~~Pti~l~ 107 (218)
++.++|.+.+. .+++++|+|||+||++|+.+.|.++++++++. ++.|++||++.+ ++++++|+|.++||+++|
T Consensus 2 ~~~~~~~~~i~--~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f 79 (103)
T PHA02278 2 NSLVDLNTAIR--QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY 79 (103)
T ss_pred CCHHHHHHHHh--CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence 56788988884 58999999999999999999999999998754 378999999976 689999999999999999
Q ss_pred eCCCeeEEEEecCccCHHHHHHH
Q 027830 108 RGAHGRVCSFSCTNATIKKFKDA 130 (218)
Q Consensus 108 ~~g~~~~~~~~~g~~~~~~l~~~ 130 (218)
++|+ .+....|..+.+.|.++
T Consensus 80 k~G~--~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 80 KDGQ--LVKKYEDQVTPMQLQEL 100 (103)
T ss_pred ECCE--EEEEEeCCCCHHHHHhh
Confidence 9986 44444477888887764
No 11
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.87 E-value=3.1e-21 Score=138.38 Aligned_cols=94 Identities=22% Similarity=0.359 Sum_probs=82.6
Q ss_pred hHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEE
Q 027830 37 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 115 (218)
Q Consensus 37 ~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~ 115 (218)
+|.+.+.++.+++++|+|||+||++|+.+.|.++++++.+++ +.++.||++.++.++++|+|.++||+++|++|+ .+.
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~-~~~ 80 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQ-PVD 80 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCE-Eee
Confidence 567777665688999999999999999999999999999876 899999999999999999999999999999875 333
Q ss_pred EEecCccCHHHHHHHHH
Q 027830 116 SFSCTNATIKKFKDALA 132 (218)
Q Consensus 116 ~~~~g~~~~~~l~~~l~ 132 (218)
.+. |..+.++|.+||+
T Consensus 81 ~~~-g~~~~~~l~~~l~ 96 (96)
T cd02956 81 GFQ-GAQPEEQLRQMLD 96 (96)
T ss_pred eec-CCCCHHHHHHHhC
Confidence 444 8889999999874
No 12
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.86 E-value=4.9e-21 Score=140.60 Aligned_cols=100 Identities=16% Similarity=0.323 Sum_probs=84.5
Q ss_pred CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHC----C---CcEEEEEeCcCcHHHHHHCCCCc
Q 027830 28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN----P---DVQFLQVNYEEHKSMCYSLNVHV 100 (218)
Q Consensus 28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~----~---~v~~~~Vd~~~~~~l~~~~~I~~ 100 (218)
++.+++ .++|.+.+. .+++++|+|||+||++|+++.|.|+++++.+ + ++.|++|||+.+.+++++|+|++
T Consensus 2 ~v~~l~-~~~f~~~i~--~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~ 78 (108)
T cd02996 2 EIVSLT-SGNIDDILQ--SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINK 78 (108)
T ss_pred ceEEcC-HhhHHHHHh--cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCc
Confidence 456675 457888773 5789999999999999999999999998764 2 38999999999999999999999
Q ss_pred CCEEEEEeCCCeeEEEEecCccCHHHHHHHH
Q 027830 101 LPFFRFYRGAHGRVCSFSCTNATIKKFKDAL 131 (218)
Q Consensus 101 ~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l 131 (218)
+||+++|++|+.....+. |.++.++|.+||
T Consensus 79 ~Ptl~~~~~g~~~~~~~~-g~~~~~~l~~fi 108 (108)
T cd02996 79 YPTLKLFRNGMMMKREYR-GQRSVEALAEFV 108 (108)
T ss_pred CCEEEEEeCCcCcceecC-CCCCHHHHHhhC
Confidence 999999999862234455 899999999885
No 13
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.4e-21 Score=161.49 Aligned_cols=108 Identities=20% Similarity=0.377 Sum_probs=95.4
Q ss_pred cCcEEecChhhHHHHH-HhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEE
Q 027830 27 RLALELGRHKDLVESL-WHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF 104 (218)
Q Consensus 27 ~~v~~i~s~~~~~~~l-~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti 104 (218)
.++++||+. +|.+.+ ..+..++|+|+||||||++|+.+.|.+++++.+|.+ +.+++||||+++.++..|||+++||+
T Consensus 23 ~~I~dvT~a-nfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV 101 (304)
T COG3118 23 PGIKDVTEA-NFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTV 101 (304)
T ss_pred ccceechHh-HHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeE
Confidence 338888876 455555 454566999999999999999999999999999988 99999999999999999999999999
Q ss_pred EEEeCCCeeEEEEecCccCHHHHHHHHHhhCCC
Q 027830 105 RFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD 137 (218)
Q Consensus 105 ~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~ 137 (218)
++|++|+ -+..|. |....+.++.||.++++.
T Consensus 102 ~af~dGq-pVdgF~-G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 102 YAFKDGQ-PVDGFQ-GAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEeeCCc-CccccC-CCCcHHHHHHHHHHhcCh
Confidence 9999997 566666 888899999999999975
No 14
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.86 E-value=1.5e-20 Score=136.96 Aligned_cols=97 Identities=20% Similarity=0.326 Sum_probs=84.1
Q ss_pred EecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCcCcHHHHHHCCCCcCCEEEEEe
Q 027830 31 ELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108 (218)
Q Consensus 31 ~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~ 108 (218)
.|.+.++|.+.+. ++++++|+|||+||++|+.+.|.+.++++.+.+ +.|+.+|++ +.+++++|+|+++||+++|+
T Consensus 3 ~i~~~~~~~~~i~--~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~ 79 (102)
T cd02948 3 EINNQEEWEELLS--NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYK 79 (102)
T ss_pred EccCHHHHHHHHc--cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEE
Confidence 5788899999873 588999999999999999999999999999864 889999999 78899999999999999999
Q ss_pred CCCeeEEEEecCccCHHHHHHHHHh
Q 027830 109 GAHGRVCSFSCTNATIKKFKDALAK 133 (218)
Q Consensus 109 ~g~~~~~~~~~g~~~~~~l~~~l~~ 133 (218)
+|+ .+....| .+.+.|.++|.+
T Consensus 80 ~g~--~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 80 NGE--LVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred CCE--EEEEEec-CChHHHHHHHhh
Confidence 885 4444434 588999998875
No 15
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.85 E-value=1.3e-20 Score=144.44 Aligned_cols=107 Identities=14% Similarity=0.116 Sum_probs=92.0
Q ss_pred cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEE-E
Q 027830 29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR-F 106 (218)
Q Consensus 29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~-l 106 (218)
+..+.+.+++.+.+....+++|+|+|||+||++|+.+.|.|+++++++++ +.|++||+|+++++++.|+|++.||++ |
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~f 84 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFF 84 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEE
Confidence 45678999999999866799999999999999999999999999999998 888999999999999999999877666 8
Q ss_pred EeCCCeeEEEEecC--------ccCHHHHHHHHHhhCC
Q 027830 107 YRGAHGRVCSFSCT--------NATIKKFKDALAKHTP 136 (218)
Q Consensus 107 ~~~g~~~~~~~~~g--------~~~~~~l~~~l~~~~~ 136 (218)
|++|+.. +.+..| ..+.++|++.++....
T Consensus 85 fk~g~~~-vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 85 FRNKHIM-IDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred EECCeEE-EEEecccccccccccCCHHHHHHHHHHHHH
Confidence 8998633 444336 5788889888887763
No 16
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.85 E-value=8.8e-21 Score=140.31 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=84.7
Q ss_pred ChhhHHHHHH-hcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCC
Q 027830 34 RHKDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 110 (218)
Q Consensus 34 s~~~~~~~l~-~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g 110 (218)
+.++|.+.+. ...+++++|+|||+||++|+.+.|.|.++++++. ++.|++||++.++.++++++|.++||+++|++|
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence 4456665443 3468999999999999999999999999999986 489999999999999999999999999999988
Q ss_pred CeeEEEEecCccCHHHHHHHHHh
Q 027830 111 HGRVCSFSCTNATIKKFKDALAK 133 (218)
Q Consensus 111 ~~~~~~~~~g~~~~~~l~~~l~~ 133 (218)
+ ...+..|..+.+.|.+||++
T Consensus 90 ~--~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 90 Q--VTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred E--EEEEecCCCCHHHHHHHHhc
Confidence 5 45555588999999999976
No 17
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.85 E-value=1.9e-20 Score=140.16 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=89.2
Q ss_pred CcEEecChhhHHHHHHhcCCCeEEEEEECCCChh--HH--hHHHHHHHHHHHC--CC-cEEEEEeCcCcHHHHHHCCCCc
Q 027830 28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGG--CK--ALHPKICQLAEMN--PD-VQFLQVNYEEHKSMCYSLNVHV 100 (218)
Q Consensus 28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~--C~--~~~p~l~~la~~~--~~-v~~~~Vd~~~~~~l~~~~~I~~ 100 (218)
.+..++ .++|.+.+.+ ++.++|++||+.||++ |+ .+.|.+.+++.++ .+ +.|++||++++++++++|+|++
T Consensus 10 ~v~~lt-~~nF~~~v~~-~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 10 RVIDLN-EKNYKQVLKK-YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred ceeeCC-hhhHHHHHHh-CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence 355555 4688888875 6779999999999977 99 8899999999987 54 9999999999999999999999
Q ss_pred CCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830 101 LPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 101 ~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
+||+++|++|+ .+.+. |.++.+.|.+||++..
T Consensus 88 iPTl~lfk~G~--~v~~~-G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 88 EDSIYVFKDDE--VIEYD-GEFAADTLVEFLLDLI 119 (120)
T ss_pred ccEEEEEECCE--EEEee-CCCCHHHHHHHHHHHh
Confidence 99999999986 45555 8999999999998764
No 18
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.85 E-value=2.6e-20 Score=134.88 Aligned_cols=98 Identities=14% Similarity=0.316 Sum_probs=83.7
Q ss_pred CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830 28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~~~~l~~~~~I~~~Pti~ 105 (218)
++++++ .++|.+.+ + ++ ++|+|||+||++|+.+.|.|+++++.+. ++.|++||+++++.++++|+|.++||++
T Consensus 2 ~v~~l~-~~~f~~~~-~--~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 2 NVVELT-DSNWTLVL-E--GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIY 76 (101)
T ss_pred ceEEcC-hhhHHHHh-C--CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEE
Confidence 466776 45787765 2 33 7899999999999999999999998875 4899999999999999999999999999
Q ss_pred EEeCCCeeEEEEecCccCHHHHHHHHHh
Q 027830 106 FYRGAHGRVCSFSCTNATIKKFKDALAK 133 (218)
Q Consensus 106 l~~~g~~~~~~~~~g~~~~~~l~~~l~~ 133 (218)
+|++|+ +..+. |.++.++|.+||++
T Consensus 77 ~~~~g~--~~~~~-G~~~~~~l~~~i~~ 101 (101)
T cd02994 77 HAKDGV--FRRYQ-GPRDKEDLISFIEE 101 (101)
T ss_pred EeCCCC--EEEec-CCCCHHHHHHHHhC
Confidence 998885 45555 89999999999864
No 19
>PRK09381 trxA thioredoxin; Provisional
Probab=99.85 E-value=5.4e-20 Score=135.12 Aligned_cols=105 Identities=15% Similarity=0.350 Sum_probs=90.6
Q ss_pred cCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830 27 RLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 27 ~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~ 105 (218)
..+++++. ++|.+.+.+ .+++++|+||++||++|+.+.|.|+++++.+++ +.|+.+|++.++.++++|+|.++||++
T Consensus 3 ~~v~~~~~-~~~~~~v~~-~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 80 (109)
T PRK09381 3 DKIIHLTD-DSFDTDVLK-ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 80 (109)
T ss_pred CcceeeCh-hhHHHHHhc-CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEE
Confidence 45777765 577776654 688999999999999999999999999999976 999999999999999999999999999
Q ss_pred EEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830 106 FYRGAHGRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 106 l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
+|++|+ ......|..+.++|..+|.+++
T Consensus 81 ~~~~G~--~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 81 LFKNGE--VAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEeCCe--EEEEecCCCCHHHHHHHHHHhc
Confidence 998875 4444448889999999998875
No 20
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.84 E-value=3.3e-20 Score=137.75 Aligned_cols=84 Identities=25% Similarity=0.419 Sum_probs=79.0
Q ss_pred ccCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830 26 HRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 26 ~~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~ 105 (218)
...+..|++.++|.+.+.+ +++++|+||++||++|+.+.|.|++++++++++.|++||++++++++++|+|.++||++
T Consensus 3 ~g~v~~i~~~~~~~~~i~~--~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l 80 (113)
T cd02989 3 HGKYREVSDEKEFFEIVKS--SERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVI 80 (113)
T ss_pred CCCeEEeCCHHHHHHHHhC--CCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEE
Confidence 3568899998999999954 78999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCC
Q 027830 106 FYRGAH 111 (218)
Q Consensus 106 l~~~g~ 111 (218)
+|++|+
T Consensus 81 ~fk~G~ 86 (113)
T cd02989 81 LFKNGK 86 (113)
T ss_pred EEECCE
Confidence 999996
No 21
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.84 E-value=2.8e-20 Score=136.21 Aligned_cols=100 Identities=25% Similarity=0.479 Sum_probs=85.5
Q ss_pred cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcC--cHHHHHHCCCCcCCEEE
Q 027830 29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE--HKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~--~~~l~~~~~I~~~Pti~ 105 (218)
++++++ ++|.+.+.+ .+++++|+|||+||++|+.+.|.|.++++.+.+ +.|+.||++. +..++++|+|.++||++
T Consensus 2 v~~l~~-~~~~~~i~~-~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYELTP-KNFDKVVHN-TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEcch-hhHHHHHhc-CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 445554 467777765 688899999999999999999999999999876 8999999998 88999999999999999
Q ss_pred EEeCCC---e-eEEEEecCccCHHHHHHHH
Q 027830 106 FYRGAH---G-RVCSFSCTNATIKKFKDAL 131 (218)
Q Consensus 106 l~~~g~---~-~~~~~~~g~~~~~~l~~~l 131 (218)
+|++|+ . ....|. |.++.++|.+||
T Consensus 80 ~~~~~~~~~~~~~~~~~-G~~~~~~l~~fi 108 (109)
T cd03002 80 VFRPPKKASKHAVEDYN-GERSAKAIVDFV 108 (109)
T ss_pred EEeCCCccccccccccc-CccCHHHHHHHh
Confidence 998885 1 234455 899999999997
No 22
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.84 E-value=6.5e-20 Score=135.98 Aligned_cols=83 Identities=29% Similarity=0.538 Sum_probs=75.7
Q ss_pred cCcEEecChhhHHHHHHhcC-CCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830 27 RLALELGRHKDLVESLWHAG-DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 27 ~~v~~i~s~~~~~~~l~~~~-~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~ 105 (218)
..+.+|++ ++|.+.+.+.+ +++++|+||++||++|+.+.|.|++++++|+++.|++||++++ .++++|+|.++||++
T Consensus 4 g~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 45778888 78988887532 4899999999999999999999999999999999999999998 999999999999999
Q ss_pred EEeCCC
Q 027830 106 FYRGAH 111 (218)
Q Consensus 106 l~~~g~ 111 (218)
+|++|+
T Consensus 82 ~f~~G~ 87 (113)
T cd02957 82 VYKNGE 87 (113)
T ss_pred EEECCE
Confidence 999986
No 23
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.83 E-value=8.4e-20 Score=132.18 Aligned_cols=100 Identities=22% Similarity=0.406 Sum_probs=86.3
Q ss_pred cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEE
Q 027830 29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107 (218)
Q Consensus 29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~ 107 (218)
+.+++ .++|.+.+.+ .+++++|+||++||++|+.+.|.|.++++.+.+ +.|+.+|+++++.++++|+|+++|++++|
T Consensus 2 v~~l~-~~~~~~~i~~-~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELT-DSNFDKKVLN-SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcC-HHhHHHHHhc-CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 44554 4578777765 567799999999999999999999999998865 99999999999999999999999999999
Q ss_pred eCCCeeEEEEecCccCHHHHHHHH
Q 027830 108 RGAHGRVCSFSCTNATIKKFKDAL 131 (218)
Q Consensus 108 ~~g~~~~~~~~~g~~~~~~l~~~l 131 (218)
++|+.....+. |..+.++|.+|+
T Consensus 80 ~~~~~~~~~~~-g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKNSPQDYQ-GGRTAKAIVSAA 102 (103)
T ss_pred CCCCcceeecC-CCCCHHHHHHHh
Confidence 98854556666 899999999986
No 24
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.2e-20 Score=151.43 Aligned_cols=109 Identities=28% Similarity=0.493 Sum_probs=100.7
Q ss_pred cCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEE
Q 027830 27 RLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 106 (218)
Q Consensus 27 ~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l 106 (218)
+.|+.|++..+|...+.....|.++|+|||+||++|+++.|.|..|+.+|++..|++||+++....+..+||...|||++
T Consensus 1 m~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFif 80 (288)
T KOG0908|consen 1 MPVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIF 80 (288)
T ss_pred CCeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEE
Confidence 46899999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCeeEEEEecCccCHHHHHHHHHhhCCCC
Q 027830 107 YRGAHGRVCSFSCTNATIKKFKDALAKHTPDR 138 (218)
Q Consensus 107 ~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 138 (218)
|.+|. ++..+ .+.+...|+..+.+++...
T Consensus 81 f~ng~-kid~~--qGAd~~gLe~kv~~~~sts 109 (288)
T KOG0908|consen 81 FRNGV-KIDQI--QGADASGLEEKVAKYASTS 109 (288)
T ss_pred EecCe-Eeeee--cCCCHHHHHHHHHHHhccC
Confidence 99996 55555 4789999999999998544
No 25
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.83 E-value=1.2e-19 Score=133.51 Aligned_cols=99 Identities=12% Similarity=0.212 Sum_probs=83.1
Q ss_pred hhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCee
Q 027830 35 HKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR 113 (218)
Q Consensus 35 ~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~ 113 (218)
.+++.+.+...++++|+|.|||+||++|+.+.|.|++++++|++ +.|++||+++.+++++.|+|...||++||++|+.-
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 45778888766799999999999999999999999999999999 99999999999999999999999999999999733
Q ss_pred EEEEecCc--------cCHHHHHHHHHh
Q 027830 114 VCSFSCTN--------ATIKKFKDALAK 133 (218)
Q Consensus 114 ~~~~~~g~--------~~~~~l~~~l~~ 133 (218)
.+.+..|+ .+.++|++.++-
T Consensus 82 ~~d~gt~~~~k~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 82 KVDYGSPDHTKFVGSFKTKQDFIDLIEV 109 (114)
T ss_pred EEecCCCCCcEEEEEcCchhHHHHHHHH
Confidence 33333232 345677766654
No 26
>PRK10996 thioredoxin 2; Provisional
Probab=99.83 E-value=2.9e-19 Score=137.38 Aligned_cols=108 Identities=21% Similarity=0.399 Sum_probs=91.7
Q ss_pred cccccCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcC
Q 027830 23 PLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVL 101 (218)
Q Consensus 23 ~l~~~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~ 101 (218)
.+....+.++ +.++|.+.+. .+++++|+||++||++|+.+.|.|.++++++.+ +.|++||++++++++++|+|.++
T Consensus 31 ~~~~~~~i~~-~~~~~~~~i~--~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~ 107 (139)
T PRK10996 31 DLFDGEVINA-TGETLDKLLQ--DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSI 107 (139)
T ss_pred ccCCCCCEEc-CHHHHHHHHh--CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCcc
Confidence 4455566665 4567887773 589999999999999999999999999998765 99999999999999999999999
Q ss_pred CEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830 102 PFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 102 Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
||+++|++|+ .+....|..+.+.|.+||++++
T Consensus 108 Ptlii~~~G~--~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 108 PTIMIFKNGQ--VVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred CEEEEEECCE--EEEEEcCCCCHHHHHHHHHHhC
Confidence 9999999875 4444448899999999998763
No 27
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.1e-20 Score=167.44 Aligned_cols=127 Identities=24% Similarity=0.402 Sum_probs=106.9
Q ss_pred hhhhhhcCCCCCCCCCCCCcccccCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC---cE
Q 027830 4 ELFFKKIKPSPREEAHPSSPLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQ 80 (218)
Q Consensus 4 ~~~~~~~~~~~~~~~~p~~~l~~~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~---v~ 80 (218)
+++-|+++++++|+++|+.+. ..+|+.+.. ++|.+++.+ .+|.|||.||||||+||+++.|+|++|++.|.+ +.
T Consensus 344 ~~l~Gk~~p~~kSqpiPe~~~-~~pVkvvVg-knfd~iv~d-e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vv 420 (493)
T KOG0190|consen 344 DFLDGKVKPHLKSQPIPEDND-RSPVKVVVG-KNFDDIVLD-EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVV 420 (493)
T ss_pred HHhcCccccccccCCCCcccc-cCCeEEEee-cCHHHHhhc-cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcE
Confidence 567899999999999996554 344555554 367777765 899999999999999999999999999999864 99
Q ss_pred EEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCe-eEEEEecCccCHHHHHHHHHhhCC
Q 027830 81 FLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG-RVCSFSCTNATIKKFKDALAKHTP 136 (218)
Q Consensus 81 ~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~-~~~~~~~g~~~~~~l~~~l~~~~~ 136 (218)
+++||.+.|. .....+.++|||.+|+.|.. .++.|. |.++.++|..||.++..
T Consensus 421 iAKmDaTaNd--~~~~~~~~fPTI~~~pag~k~~pv~y~-g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 421 IAKMDATAND--VPSLKVDGFPTILFFPAGHKSNPVIYN-GDRTLEDLKKFIKKSAT 474 (493)
T ss_pred EEEecccccc--CccccccccceEEEecCCCCCCCcccC-CCcchHHHHhhhccCCC
Confidence 9999999987 35667888999999988763 466776 99999999999999886
No 28
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.82 E-value=1.6e-19 Score=133.00 Aligned_cols=101 Identities=15% Similarity=0.297 Sum_probs=83.8
Q ss_pred cEEecChhhHHHHHH-hcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCcC-cHHHHH-HCCCCcCCE
Q 027830 29 ALELGRHKDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE-HKSMCY-SLNVHVLPF 103 (218)
Q Consensus 29 v~~i~s~~~~~~~l~-~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~~-~~~l~~-~~~I~~~Pt 103 (218)
|++++. ++|...+. ..++++++|.||++||++|+++.|.|.++++.+.+ +.++.||++. +..++. .|+|+++||
T Consensus 3 v~~~~~-~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 3 VVTLSR-AEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred ceeccH-HHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 455555 47777764 34689999999999999999999999999998864 8999999997 577886 499999999
Q ss_pred EEEEeCCCeeEEEEecC-ccCHHHHHHHH
Q 027830 104 FRFYRGAHGRVCSFSCT-NATIKKFKDAL 131 (218)
Q Consensus 104 i~l~~~g~~~~~~~~~g-~~~~~~l~~~l 131 (218)
+++|.+|......|. | .++.+.|+.||
T Consensus 82 i~~f~~~~~~~~~y~-g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYP-SEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceecc-CCCCCHHHHHhhC
Confidence 999988765566676 5 58999999885
No 29
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.82 E-value=2.9e-19 Score=147.23 Aligned_cols=107 Identities=12% Similarity=0.228 Sum_probs=93.2
Q ss_pred cCcEEecChhhHHHHHHhc---CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCC
Q 027830 27 RLALELGRHKDLVESLWHA---GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLP 102 (218)
Q Consensus 27 ~~v~~i~s~~~~~~~l~~~---~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~P 102 (218)
..+.+++ .++|.+.+... .+++++|+|||+||++|+.+.|.|+++++++++ +.|+.||++.+++++++|+|.++|
T Consensus 30 ~~Vv~Lt-~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 30 NALVLLN-DKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCcEECC-HHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 4577775 45888877542 368999999999999999999999999999987 899999999999999999999999
Q ss_pred EEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830 103 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP 136 (218)
Q Consensus 103 ti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~ 136 (218)
|+++|++|+ ...+..|.++.++|.+|+.+...
T Consensus 109 Tl~~f~~G~--~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 109 TLLLFDKGK--MYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred EEEEEECCE--EEEeeCCCCCHHHHHHHHHHHHH
Confidence 999999875 66666588999999999988874
No 30
>PTZ00051 thioredoxin; Provisional
Probab=99.82 E-value=4.4e-19 Score=127.55 Aligned_cols=95 Identities=21% Similarity=0.410 Sum_probs=82.2
Q ss_pred cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEe
Q 027830 29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108 (218)
Q Consensus 29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~ 108 (218)
+.++++.+++.+.+. .+++++|+||++||++|+.+.+.|.++++.++++.|+.||++++..++++|+|.++||+++|+
T Consensus 2 v~~i~~~~~~~~~~~--~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 2 VHIVTSQAEFESTLS--QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred eEEecCHHHHHHHHh--cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence 578899999988874 588999999999999999999999999999989999999999999999999999999999999
Q ss_pred CCCeeEEEEecCccCHHHHH
Q 027830 109 GAHGRVCSFSCTNATIKKFK 128 (218)
Q Consensus 109 ~g~~~~~~~~~g~~~~~~l~ 128 (218)
+|+ .+..+. | ...++|.
T Consensus 80 ~g~-~~~~~~-G-~~~~~~~ 96 (98)
T PTZ00051 80 NGS-VVDTLL-G-ANDEALK 96 (98)
T ss_pred CCe-EEEEEe-C-CCHHHhh
Confidence 886 333333 4 4556554
No 31
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.81 E-value=4.1e-19 Score=127.40 Aligned_cols=95 Identities=24% Similarity=0.442 Sum_probs=80.9
Q ss_pred ChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHH-CCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCe
Q 027830 34 RHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM-NPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG 112 (218)
Q Consensus 34 s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~-~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~ 112 (218)
|.++|.+.+....+++++|+||++||++|+.+.+.|+++++. +.++.+++||++++++++++|+|.++||+++|++|+
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~- 79 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT- 79 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE-
Confidence 356788888765579999999999999999999999999998 556999999999999999999999999999999875
Q ss_pred eEEEEecCccCHHHHHHHH
Q 027830 113 RVCSFSCTNATIKKFKDAL 131 (218)
Q Consensus 113 ~~~~~~~g~~~~~~l~~~l 131 (218)
..... .+.+.++|.+.|
T Consensus 80 -~~~~~-~g~~~~~l~~~~ 96 (97)
T cd02984 80 -IVDRV-SGADPKELAKKV 96 (97)
T ss_pred -EEEEE-eCCCHHHHHHhh
Confidence 44443 345777777765
No 32
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.81 E-value=2.8e-19 Score=129.18 Aligned_cols=97 Identities=25% Similarity=0.497 Sum_probs=82.1
Q ss_pred cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC----CcEEEEEeCcCcHHHHHHCCCCcCCEE
Q 027830 29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFF 104 (218)
Q Consensus 29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~----~v~~~~Vd~~~~~~l~~~~~I~~~Pti 104 (218)
+++++. ++|.+.+.+ + .++|+|||+||++|+.+.|.|.++++.+. ++.|+.||++.+..+|++|+|.++||+
T Consensus 2 ~~~l~~-~~f~~~~~~--~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 77 (102)
T cd03005 2 VLELTE-DNFDHHIAE--G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTL 77 (102)
T ss_pred eeECCH-HHHHHHhhc--C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEE
Confidence 345554 578888743 3 59999999999999999999999998874 389999999999999999999999999
Q ss_pred EEEeCCCeeEEEEecCccCHHHHHHHH
Q 027830 105 RFYRGAHGRVCSFSCTNATIKKFKDAL 131 (218)
Q Consensus 105 ~l~~~g~~~~~~~~~g~~~~~~l~~~l 131 (218)
++|++|+ .+..+. |..+.++|.+||
T Consensus 78 ~~~~~g~-~~~~~~-G~~~~~~l~~~i 102 (102)
T cd03005 78 LLFKDGE-KVDKYK-GTRDLDSLKEFV 102 (102)
T ss_pred EEEeCCC-eeeEee-CCCCHHHHHhhC
Confidence 9999886 444555 899999998875
No 33
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.81 E-value=8e-19 Score=136.61 Aligned_cols=90 Identities=18% Similarity=0.280 Sum_probs=77.8
Q ss_pred cCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcCcHHHHHHCCCCc----
Q 027830 27 RLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHV---- 100 (218)
Q Consensus 27 ~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~~~~l~~~~~I~~---- 100 (218)
..+.+++. ++|.+.+..+.+++++|+|||+||++|+.+.|.|+++++++. ++.|++||++++++++++|+|.+
T Consensus 28 ~~v~~l~~-~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v 106 (152)
T cd02962 28 EHIKYFTP-KTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLS 106 (152)
T ss_pred CccEEcCH-HHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCc
Confidence 56667765 678888866567899999999999999999999999999986 39999999999999999999988
Q ss_pred --CCEEEEEeCCCeeEEEEe
Q 027830 101 --LPFFRFYRGAHGRVCSFS 118 (218)
Q Consensus 101 --~Pti~l~~~g~~~~~~~~ 118 (218)
+||+++|++|+ .+..+.
T Consensus 107 ~~~PT~ilf~~Gk-~v~r~~ 125 (152)
T cd02962 107 KQLPTIILFQGGK-EVARRP 125 (152)
T ss_pred CCCCEEEEEECCE-EEEEEe
Confidence 99999999986 344443
No 34
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.81 E-value=5.4e-19 Score=140.84 Aligned_cols=109 Identities=22% Similarity=0.417 Sum_probs=89.5
Q ss_pred cccCcEEecChhhHHHHHHhcC-CCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCE
Q 027830 25 VHRLALELGRHKDLVESLWHAG-DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF 103 (218)
Q Consensus 25 ~~~~v~~i~s~~~~~~~l~~~~-~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pt 103 (218)
....+.+|++.++|.+.+.+.+ +.+|||+||++||++|+.+.|.|.+|+.+|++++|++||++++ .++.+|+|.++||
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPT 138 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPA 138 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCE
Confidence 3678899999788988886532 4599999999999999999999999999999999999999987 8999999999999
Q ss_pred EEEEeCCC--eeEEEEe---cCccCHHHHHHHHHhh
Q 027830 104 FRFYRGAH--GRVCSFS---CTNATIKKFKDALAKH 134 (218)
Q Consensus 104 i~l~~~g~--~~~~~~~---~g~~~~~~l~~~l~~~ 134 (218)
+++|++|+ .+++.+. ....+.+.|+.+|.++
T Consensus 139 lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 139 LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 99999997 1222221 1255677777777653
No 35
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.80 E-value=6.5e-19 Score=127.60 Aligned_cols=98 Identities=22% Similarity=0.428 Sum_probs=83.1
Q ss_pred cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC--C-cEEEEEeCcC--cHHHHHHCCCCcCCE
Q 027830 29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--D-VQFLQVNYEE--HKSMCYSLNVHVLPF 103 (218)
Q Consensus 29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~-v~~~~Vd~~~--~~~l~~~~~I~~~Pt 103 (218)
+.++++ .+|.+.+.+ +++++|+|||+||++|+.+.|.+.++++.+. + +.++.+|++. +..++++|+|+++||
T Consensus 2 ~~~l~~-~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt 78 (104)
T cd02997 2 VVHLTD-EDFRKFLKK--EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPT 78 (104)
T ss_pred eEEech-HhHHHHHhh--CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccE
Confidence 455654 478777754 6699999999999999999999999998875 3 8899999998 999999999999999
Q ss_pred EEEEeCCCeeEEEEecCccCHHHHHHHH
Q 027830 104 FRFYRGAHGRVCSFSCTNATIKKFKDAL 131 (218)
Q Consensus 104 i~l~~~g~~~~~~~~~g~~~~~~l~~~l 131 (218)
+++|++|+ .+..+. |..+.++|.+||
T Consensus 79 ~~~~~~g~-~~~~~~-g~~~~~~l~~~l 104 (104)
T cd02997 79 FKYFENGK-FVEKYE-GERTAEDIIEFM 104 (104)
T ss_pred EEEEeCCC-eeEEeC-CCCCHHHHHhhC
Confidence 99999886 444444 889999998875
No 36
>PTZ00102 disulphide isomerase; Provisional
Probab=99.80 E-value=7.3e-19 Score=159.55 Aligned_cols=129 Identities=20% Similarity=0.357 Sum_probs=109.2
Q ss_pred hhhhhhcCCCCCCCCCCCCcccccCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC---cE
Q 027830 4 ELFFKKIKPSPREEAHPSSPLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQ 80 (218)
Q Consensus 4 ~~~~~~~~~~~~~~~~p~~~l~~~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~---v~ 80 (218)
.++.|++++.+++++.|... ...+..+.. ++|.+.+.+ .+++|+|+|||+||++|+.+.|.|+++++.+.+ +.
T Consensus 336 ~~~~gk~~~~~~se~~p~~~--~~~v~~l~~-~~f~~~v~~-~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~ 411 (477)
T PTZ00102 336 DVEAGKVEKSIKSEPIPEEQ--DGPVKVVVG-NTFEEIVFK-SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSII 411 (477)
T ss_pred HHhCCCCCcccccCCCCCCC--CCCeEEecc-cchHHHHhc-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEE
Confidence 35578889999999988664 466777765 577777654 689999999999999999999999999988753 89
Q ss_pred EEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCCC
Q 027830 81 FLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD 137 (218)
Q Consensus 81 ~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~ 137 (218)
++++|++.+...++.|+++++||+++|++|+.....+. |.++.++|.+||+++...
T Consensus 412 ~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~-G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 412 VAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYE-GERTVEGFKEFVNKHATN 467 (477)
T ss_pred EEEEECCCCccchhcCCCcccCeEEEEECCCcceeEec-CcCCHHHHHHHHHHcCCC
Confidence 99999999999999999999999999998853334555 899999999999999864
No 37
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.80 E-value=6.3e-19 Score=126.99 Aligned_cols=97 Identities=19% Similarity=0.434 Sum_probs=85.6
Q ss_pred hhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC---cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCC
Q 027830 35 HKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 35 ~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~---v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~ 111 (218)
.++|.+.+. .+++++|+||++||++|+.+.+.|+++++.+.+ +.++.+|++++..++++|+|.++|++++|++|+
T Consensus 3 ~~~~~~~~~--~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 3 ASNFDDIVL--SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred hhhHHHHhc--cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 356777774 688999999999999999999999999998864 999999999999999999999999999998886
Q ss_pred eeEEEEecCccCHHHHHHHHHhhC
Q 027830 112 GRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 112 ~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
....+. |..+.++|..||++++
T Consensus 81 -~~~~~~-g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 81 -KPVDYE-GGRDLEAIVEFVNEKS 102 (102)
T ss_pred -cceeec-CCCCHHHHHHHHHhcC
Confidence 355666 8899999999998864
No 38
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.80 E-value=1.4e-18 Score=124.73 Aligned_cols=98 Identities=23% Similarity=0.465 Sum_probs=85.1
Q ss_pred hhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCee
Q 027830 35 HKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR 113 (218)
Q Consensus 35 ~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~ 113 (218)
.+++.+.+.+ .+++++|+||++||++|+.+.+.+.++++.+++ +.|+.+|++.++.++++|+|.++|++++|++|+
T Consensus 3 ~~~~~~~~~~-~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~-- 79 (101)
T TIGR01068 3 DANFDETIAS-SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK-- 79 (101)
T ss_pred HHHHHHHHhh-cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc--
Confidence 4567777754 567999999999999999999999999988875 999999999999999999999999999998876
Q ss_pred EEEEecCccCHHHHHHHHHhhC
Q 027830 114 VCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 114 ~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
......|..+.++|.+||++.+
T Consensus 80 ~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 80 EVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred EeeeecCCCCHHHHHHHHHhhC
Confidence 3444448889999999998764
No 39
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.80 E-value=5.6e-19 Score=127.82 Aligned_cols=99 Identities=23% Similarity=0.385 Sum_probs=83.3
Q ss_pred cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC---cEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830 29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEEHKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~---v~~~~Vd~~~~~~l~~~~~I~~~Pti~ 105 (218)
+.+++. ++|.+.+.+ .+++++|+||++||++|+.+.|.|.++++.+.+ +.++++|++.+ +++..+++.++||++
T Consensus 2 v~~l~~-~~f~~~i~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~ 78 (104)
T cd02995 2 VKVVVG-KNFDEVVLD-SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTIL 78 (104)
T ss_pred eEEEch-hhhHHHHhC-CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEE
Confidence 455554 477777765 568999999999999999999999999998765 89999999987 578899999999999
Q ss_pred EEeCCC-eeEEEEecCccCHHHHHHHH
Q 027830 106 FYRGAH-GRVCSFSCTNATIKKFKDAL 131 (218)
Q Consensus 106 l~~~g~-~~~~~~~~g~~~~~~l~~~l 131 (218)
+|.+|+ .....+. |..+.++|.+||
T Consensus 79 ~~~~~~~~~~~~~~-g~~~~~~l~~fi 104 (104)
T cd02995 79 FFPAGDKSNPIKYE-GDRTLEDLIKFI 104 (104)
T ss_pred EEcCCCcCCceEcc-CCcCHHHHHhhC
Confidence 998875 3455556 899999999886
No 40
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.9e-19 Score=159.32 Aligned_cols=127 Identities=21% Similarity=0.356 Sum_probs=104.1
Q ss_pred cccCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC----CcEEEEEeCcCcHHHHHHCCCCc
Q 027830 25 VHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHV 100 (218)
Q Consensus 25 ~~~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~----~v~~~~Vd~~~~~~l~~~~~I~~ 100 (218)
....|..++. ++|.+.+ ..+..++|.||||||+||+++.|.+++.+..+. .+.+++|||+.+.++|.+|+|++
T Consensus 23 ~~~~Vl~Lt~-dnf~~~i--~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~g 99 (493)
T KOG0190|consen 23 AEEDVLVLTK-DNFKETI--NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRG 99 (493)
T ss_pred cccceEEEec-ccHHHHh--ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCC
Confidence 4456777766 4788888 458899999999999999999999999988753 49999999999999999999999
Q ss_pred CCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHhCCC
Q 027830 101 LPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKD 160 (218)
Q Consensus 101 ~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 160 (218)
|||+.+|++|. ....|. |.++.+.|+.||+++.+..... -.+.++...+....+
T Consensus 100 yPTlkiFrnG~-~~~~Y~-G~r~adgIv~wl~kq~gPa~~~----l~~~~~a~~~l~~~~ 153 (493)
T KOG0190|consen 100 YPTLKIFRNGR-SAQDYN-GPREADGIVKWLKKQSGPASKT----LKTVDEAEEFLSKKD 153 (493)
T ss_pred CCeEEEEecCC-cceecc-CcccHHHHHHHHHhccCCCcee----cccHHHHHhhccCCc
Confidence 99999999986 246666 9999999999999999755321 124556666666655
No 41
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.80 E-value=6e-19 Score=127.74 Aligned_cols=100 Identities=23% Similarity=0.451 Sum_probs=84.1
Q ss_pred cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC---CcEEEEEeCcC-cHHHHHHCCCCcCCEE
Q 027830 29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEE-HKSMCYSLNVHVLPFF 104 (218)
Q Consensus 29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~---~v~~~~Vd~~~-~~~l~~~~~I~~~Pti 104 (218)
+.++++ +++.+.+.. .+++++|+||++||++|+.+.|.|.++++.+. ++.++.+|++. ++.++++|+|.++|++
T Consensus 2 ~~~l~~-~~~~~~~~~-~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~ 79 (105)
T cd02998 2 VVELTD-SNFDKVVGD-DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTL 79 (105)
T ss_pred eEEcch-hcHHHHhcC-CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEE
Confidence 455654 577776643 56799999999999999999999999999875 39999999999 9999999999999999
Q ss_pred EEEeCCCeeEEEEecCccCHHHHHHHH
Q 027830 105 RFYRGAHGRVCSFSCTNATIKKFKDAL 131 (218)
Q Consensus 105 ~l~~~g~~~~~~~~~g~~~~~~l~~~l 131 (218)
++|.+|......+. |..+.++|.+||
T Consensus 80 ~~~~~~~~~~~~~~-g~~~~~~l~~~i 105 (105)
T cd02998 80 KFFPKGSTEPVKYE-GGRDLEDLVKFV 105 (105)
T ss_pred EEEeCCCCCccccC-CccCHHHHHhhC
Confidence 99988743444454 889999999885
No 42
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.79 E-value=1.4e-18 Score=127.72 Aligned_cols=90 Identities=12% Similarity=0.108 Sum_probs=78.3
Q ss_pred hhhHHHHHHhcCCCeEEEEEECCC--ChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCC
Q 027830 35 HKDLVESLWHAGDKLVVVDFFSPG--CGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 35 ~~~~~~~l~~~~~k~vlV~Fya~w--C~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~ 111 (218)
..+|.+.+ ..+..++|.||++| |++|+.+.|.|.+++++|++ +.|++||++++++++.+|+|+++||+++|++|+
T Consensus 17 ~~~~~~~~--~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk 94 (111)
T cd02965 17 AATLDDWL--AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGR 94 (111)
T ss_pred cccHHHHH--hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCE
Confidence 34677776 35889999999997 99999999999999999988 899999999999999999999999999999986
Q ss_pred eeEEEEecCccCHHHHH
Q 027830 112 GRVCSFSCTNATIKKFK 128 (218)
Q Consensus 112 ~~~~~~~~g~~~~~~l~ 128 (218)
.+....|..+.+++.
T Consensus 95 --~v~~~~G~~~~~e~~ 109 (111)
T cd02965 95 --YVGVLAGIRDWDEYV 109 (111)
T ss_pred --EEEEEeCccCHHHHh
Confidence 444444888887775
No 43
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.78 E-value=1.6e-18 Score=126.38 Aligned_cols=93 Identities=17% Similarity=0.353 Sum_probs=79.4
Q ss_pred hhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC----CcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCC
Q 027830 36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 36 ~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~----~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~ 111 (218)
++|.+ +. .+++++|.|||+||++|+.+.|.|+++++.+. ++.++.+|++..+.++++|+|.++||+++|++|.
T Consensus 7 ~~~~~-~~--~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~ 83 (104)
T cd03000 7 DSFKD-VR--KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL 83 (104)
T ss_pred hhhhh-hc--cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC
Confidence 45555 32 47799999999999999999999999999873 3899999999999999999999999999997653
Q ss_pred eeEEEEecCccCHHHHHHHHHhh
Q 027830 112 GRVCSFSCTNATIKKFKDALAKH 134 (218)
Q Consensus 112 ~~~~~~~~g~~~~~~l~~~l~~~ 134 (218)
...+. |..+.++|.+|+++.
T Consensus 84 --~~~~~-G~~~~~~l~~~~~~~ 103 (104)
T cd03000 84 --AYNYR-GPRTKDDIVEFANRV 103 (104)
T ss_pred --ceeec-CCCCHHHHHHHHHhh
Confidence 44455 889999999999875
No 44
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.78 E-value=1.3e-18 Score=126.70 Aligned_cols=95 Identities=22% Similarity=0.245 Sum_probs=77.4
Q ss_pred hhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHH---HHHHHHCC-CcEEEEEeCcC----cHHHHHHCCCCcCCEEEEE
Q 027830 36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNP-DVQFLQVNYEE----HKSMCYSLNVHVLPFFRFY 107 (218)
Q Consensus 36 ~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l---~~la~~~~-~v~~~~Vd~~~----~~~l~~~~~I~~~Pti~l~ 107 (218)
++|.+.+. ++++++|+||++||++|+.+.+.+ .++++.+. ++.++.||+++ ...++++|+|.++||+++|
T Consensus 2 ~~~~~~~~--~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 2 AALAQALA--QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHHHH--cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 35666663 589999999999999999999988 57887777 59999999987 6789999999999999999
Q ss_pred eCCCeeEEEEecCccCHHHHHHHHH
Q 027830 108 RGAHGRVCSFSCTNATIKKFKDALA 132 (218)
Q Consensus 108 ~~g~~~~~~~~~g~~~~~~l~~~l~ 132 (218)
+.|+|+......|..+.++|.++|+
T Consensus 80 ~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 80 GPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCCCcccccccCHHHHHHHhC
Confidence 8422334443448999999998873
No 45
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.77 E-value=6.2e-18 Score=130.42 Aligned_cols=97 Identities=19% Similarity=0.292 Sum_probs=81.2
Q ss_pred hHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCc--HHHHHHCCCCcCCEEEEEe-CCCe
Q 027830 37 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEH--KSMCYSLNVHVLPFFRFYR-GAHG 112 (218)
Q Consensus 37 ~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~--~~l~~~~~I~~~Pti~l~~-~g~~ 112 (218)
++.+.+ ..++++||+|||+||++|+.+.|.|.++++.|.+ +.|+.||++.. ..++++|+|.++||++||+ +|+
T Consensus 12 ~~~~a~--~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~- 88 (142)
T cd02950 12 PPEVAL--SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN- 88 (142)
T ss_pred CHHHHH--hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC-
Confidence 455555 3589999999999999999999999999999865 78888888754 5789999999999999995 554
Q ss_pred eEEEEecCccCHHHHHHHHHhhCCC
Q 027830 113 RVCSFSCTNATIKKFKDALAKHTPD 137 (218)
Q Consensus 113 ~~~~~~~g~~~~~~l~~~l~~~~~~ 137 (218)
++....|..+.++|.++|++.+..
T Consensus 89 -~v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 89 -EEGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred -EEEEEeCCCCHHHHHHHHHHHHcC
Confidence 555555888899999999988853
No 46
>PTZ00062 glutaredoxin; Provisional
Probab=99.77 E-value=6.9e-18 Score=137.08 Aligned_cols=118 Identities=13% Similarity=0.100 Sum_probs=98.1
Q ss_pred cChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCe
Q 027830 33 GRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG 112 (218)
Q Consensus 33 ~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~ 112 (218)
.+.+++.+.+.. ..+.++++|||+||++|+.+.+++.+|+++|+++.|++||.+ |+|.++|||+||++|+
T Consensus 4 ~~~ee~~~~i~~-~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~- 73 (204)
T PTZ00062 4 IKKEEKDKLIES-NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQ- 73 (204)
T ss_pred CCHHHHHHHHhc-CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCE-
Confidence 567788888753 337789999999999999999999999999999999999987 9999999999999987
Q ss_pred eEEEEecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHhCCCceeeeCC
Q 027830 113 RVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTP 167 (218)
Q Consensus 113 ~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~v~~y~p 167 (218)
.+.++ .+.+...|..++.++...... ....+.+..++.++++|+|.++
T Consensus 74 ~i~r~--~G~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~li~~~~Vvvf~Kg 121 (204)
T PTZ00062 74 LINSL--EGCNTSTLVSFIRGWAQKGSS-----EDTVEKIERLIRNHKILLFMKG 121 (204)
T ss_pred EEeee--eCCCHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHhcCCEEEEEcc
Confidence 34333 467899999999999864321 1234568889999999999995
No 47
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.77 E-value=4.6e-18 Score=139.73 Aligned_cols=125 Identities=18% Similarity=0.238 Sum_probs=96.0
Q ss_pred CCCeEEEEEEC---CCChhHHhHHHHHHHHHHHCCCc--EEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeE-EEEec
Q 027830 46 GDKLVVVDFFS---PGCGGCKALHPKICQLAEMNPDV--QFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRV-CSFSC 119 (218)
Q Consensus 46 ~~k~vlV~Fya---~wC~~C~~~~p~l~~la~~~~~v--~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~-~~~~~ 119 (218)
.+...++.|++ +||++|+.+.|.++++++.++++ .++.+|.+++++++++|+|.++||+++|++|+ .+ ..+.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~-~~~~~~~- 95 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK-DGGIRYT- 95 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCe-eeEEEEe-
Confidence 35566777888 99999999999999999999764 56677777999999999999999999999986 33 3455
Q ss_pred CccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHhCCC---ceeeeCCCCCCCCCC
Q 027830 120 TNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKD---LSFNYTPKPHPMPAP 175 (218)
Q Consensus 120 g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~~ 175 (218)
|..+.++|.+||+..++.. +....++....+.+..... +.+|+++||..|+.+
T Consensus 96 G~~~~~~l~~~i~~~~~~~---~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~ 151 (215)
T TIGR02187 96 GIPAGYEFAALIEDIVRVS---QGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYA 151 (215)
T ss_pred ecCCHHHHHHHHHHHHHhc---CCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHH
Confidence 7888899999999886432 1234555554444433222 666999999999874
No 48
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.77 E-value=8e-18 Score=121.26 Aligned_cols=92 Identities=17% Similarity=0.437 Sum_probs=79.7
Q ss_pred HHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEE
Q 027830 38 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCS 116 (218)
Q Consensus 38 ~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~ 116 (218)
+...+.+ .+++++++||++||+.|+.+.+.++++++++.+ +.++.+|++++++++.+++|.++||+++|++|+ ++.
T Consensus 5 ~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~--~v~ 81 (97)
T cd02949 5 LRKLYHE-SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKE--LVK 81 (97)
T ss_pred HHHHHHh-CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCe--EEE
Confidence 3445554 789999999999999999999999999999875 999999999999999999999999999998875 444
Q ss_pred EecCccCHHHHHHHHH
Q 027830 117 FSCTNATIKKFKDALA 132 (218)
Q Consensus 117 ~~~g~~~~~~l~~~l~ 132 (218)
...|..+.++|.++|+
T Consensus 82 ~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 82 EISGVKMKSEYREFIE 97 (97)
T ss_pred EEeCCccHHHHHHhhC
Confidence 4448889999998874
No 49
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.2e-18 Score=153.01 Aligned_cols=129 Identities=22% Similarity=0.349 Sum_probs=112.1
Q ss_pred cCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccC
Q 027830 45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNAT 123 (218)
Q Consensus 45 ~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~ 123 (218)
..++.++|.||++||++|+.+.|.|.+++..+.+ +.++.|||+.+..+|..|+|+++||+.+|..| ...+.+. |..+
T Consensus 45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~-~~~~~~~-~~~~ 122 (383)
T KOG0191|consen 45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG-KKPIDYS-GPRN 122 (383)
T ss_pred ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC-Cceeecc-Cccc
Confidence 3688999999999999999999999999999887 99999999999999999999999999999988 4677777 7999
Q ss_pred HHHHHHHHHhhCCCCC--CCCC-CCCCCHHHHHHHHhCCC---ceeeeCCCCCCCCCC
Q 027830 124 IKKFKDALAKHTPDRC--GLGP-TKGLEEKELLALAANKD---LSFNYTPKPHPMPAP 175 (218)
Q Consensus 124 ~~~l~~~l~~~~~~~~--~~~~-~~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~~ 175 (218)
.+.+.+|+...+.... ..+. +..++..++...+.+.+ ++.||+|||.+|...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l 180 (383)
T KOG0191|consen 123 AESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKL 180 (383)
T ss_pred HHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhc
Confidence 9999999988885543 2344 66778888887655554 999999999998875
No 50
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.76 E-value=8.8e-18 Score=151.07 Aligned_cols=112 Identities=14% Similarity=0.262 Sum_probs=91.6
Q ss_pred Cccc-ccCcEEecChhhHHHHHH-hcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCcCcH-HHH-HH
Q 027830 22 SPLV-HRLALELGRHKDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHK-SMC-YS 95 (218)
Q Consensus 22 ~~l~-~~~v~~i~s~~~~~~~l~-~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~~~~-~l~-~~ 95 (218)
..+. +..+++++. ++|.+.+. .+.++++||+|||+||++|+.+.|.|++++++|.+ +.|+.||++.+. .++ ++
T Consensus 345 ~dl~~~~~Vv~L~~-~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~ 423 (463)
T TIGR00424 345 ADIFDSNNVVSLSR-PGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQE 423 (463)
T ss_pred ccccCCCCeEECCH-HHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHH
Confidence 3444 345666655 47888875 55799999999999999999999999999999864 899999998763 444 78
Q ss_pred CCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhh
Q 027830 96 LNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134 (218)
Q Consensus 96 ~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~ 134 (218)
|+|.++||++||++|..+.+.|..|.++.+.|..||+..
T Consensus 424 ~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 424 LQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred cCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 999999999999998655666764689999999999753
No 51
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.76 E-value=6.4e-18 Score=120.48 Aligned_cols=94 Identities=22% Similarity=0.445 Sum_probs=80.6
Q ss_pred hhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHC---CCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCC
Q 027830 35 HKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN---PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 35 ~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~---~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~ 111 (218)
.++|.+.+.+ +++++|+||++||++|+.+.+.|.++++.+ .++.|+.+|++++..++++|+|.++||+++|.++.
T Consensus 5 ~~~~~~~i~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 5 DDNFDELVKD--SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGS 82 (101)
T ss_pred HHHHHHHHhC--CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCC
Confidence 3578888755 559999999999999999999999999988 34999999999999999999999999999998873
Q ss_pred eeEEEEecCccCHHHHHHHH
Q 027830 112 GRVCSFSCTNATIKKFKDAL 131 (218)
Q Consensus 112 ~~~~~~~~g~~~~~~l~~~l 131 (218)
.....+. |..+.++|.+|+
T Consensus 83 ~~~~~~~-g~~~~~~i~~~~ 101 (101)
T cd02961 83 KEPVKYE-GPRTLESLVEFI 101 (101)
T ss_pred cccccCC-CCcCHHHHHhhC
Confidence 2455555 778899988874
No 52
>PLN02309 5'-adenylylsulfate reductase
Probab=99.76 E-value=1.1e-17 Score=150.46 Aligned_cols=111 Identities=14% Similarity=0.268 Sum_probs=93.0
Q ss_pred cccc-cCcEEecChhhHHHHHH-hcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCc-CcHHHHH-HC
Q 027830 23 PLVH-RLALELGRHKDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE-EHKSMCY-SL 96 (218)
Q Consensus 23 ~l~~-~~v~~i~s~~~~~~~l~-~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~-~~~~l~~-~~ 96 (218)
.+.. .++++++. ++|.+.+. .+.++++||+|||+||++|+.+.|.|.++++.+.+ +.|++||++ .+..+++ +|
T Consensus 340 dl~~~~~Vv~Lt~-~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~ 418 (457)
T PLN02309 340 DIFNSQNVVALSR-AGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQEL 418 (457)
T ss_pred cccCCCCcEECCH-HHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhC
Confidence 3444 45666665 57877764 45799999999999999999999999999999854 999999999 7788886 59
Q ss_pred CCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhh
Q 027830 97 NVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134 (218)
Q Consensus 97 ~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~ 134 (218)
+|.++|||+||++|....+.|..+.++.+.|+.||+..
T Consensus 419 ~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 419 QLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 99999999999988756677764679999999999864
No 53
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.76 E-value=1.8e-18 Score=144.90 Aligned_cols=121 Identities=16% Similarity=0.286 Sum_probs=96.5
Q ss_pred cCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC----cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecC
Q 027830 45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD----VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCT 120 (218)
Q Consensus 45 ~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~----v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g 120 (218)
..+..|+|+||||||.||+++.|+|.++.-.+.+ +++.++||+..+.++.+|+|++||||.||++|. .+.|+ |
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~--a~dYR-G 117 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDH--AIDYR-G 117 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCe--eeecC-C
Confidence 3577999999999999999999999999877654 899999999999999999999999999999876 78888 9
Q ss_pred ccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHhCCCceeeeCCCCCC
Q 027830 121 NATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTPKPHP 171 (218)
Q Consensus 121 ~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~v~~y~p~~~~ 171 (218)
+++.+.|++|..+..+.-....+ ...-+++.+.+.+...|.|-+..+.
T Consensus 118 ~R~Kd~iieFAhR~a~aiI~pi~---enQ~~fehlq~Rhq~ffVf~Gtge~ 165 (468)
T KOG4277|consen 118 GREKDAIIEFAHRCAAAIIEPIN---ENQIEFEHLQARHQPFFVFFGTGEG 165 (468)
T ss_pred CccHHHHHHHHHhcccceeeecC---hhHHHHHHHhhccCceEEEEeCCCC
Confidence 99999999999998865432221 1233566666666644444443343
No 54
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.75 E-value=4.2e-17 Score=146.85 Aligned_cols=130 Identities=20% Similarity=0.375 Sum_probs=104.2
Q ss_pred cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC----CcEEEEEeCcCcHHHHHHCCCCcCCEE
Q 027830 29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFF 104 (218)
Q Consensus 29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~----~v~~~~Vd~~~~~~l~~~~~I~~~Pti 104 (218)
+..++ .++|.+.+. .+++++|+|||+||++|+++.|.|.++++.+. ++.|+.|||+.+.++|++|+|.++||+
T Consensus 3 v~~l~-~~~~~~~i~--~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 79 (462)
T TIGR01130 3 VLVLT-KDNFDDFIK--SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTL 79 (462)
T ss_pred ceECC-HHHHHHHHh--cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEE
Confidence 45554 457888774 47899999999999999999999999888653 399999999999999999999999999
Q ss_pred EEEeCCCeeEEEEecCccCHHHHHHHHHhhCCCCCCCCCCCCC-CHHHHHHHHhCCC--ceeeeCC
Q 027830 105 RFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGL-EEKELLALAANKD--LSFNYTP 167 (218)
Q Consensus 105 ~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l-~~~~l~~~~~~~~--~v~~y~p 167 (218)
++|++|+..+..+. |.++.+.|.+||.+.++.. +..+ +.+++..+..... +++|+..
T Consensus 80 ~~~~~g~~~~~~~~-g~~~~~~l~~~i~~~~~~~-----~~~i~~~~~~~~~~~~~~~~vi~~~~~ 139 (462)
T TIGR01130 80 KIFRNGEDSVSDYN-GPRDADGIVKYMKKQSGPA-----VKEIETVADLEAFLADDDVVVIGFFKD 139 (462)
T ss_pred EEEeCCccceeEec-CCCCHHHHHHHHHHhcCCC-----ceeecCHHHHHHHHhcCCcEEEEEECC
Confidence 99998862246665 8999999999999998633 2333 4677887777655 5555554
No 55
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.74 E-value=1e-17 Score=124.25 Aligned_cols=99 Identities=12% Similarity=0.177 Sum_probs=81.4
Q ss_pred cEEecChhhHHHHHHhcCCCeEEEEEEC--CCCh---hHHhHHHHHHHHHHHCCCcEEEEEeC-----cCcHHHHHHCCC
Q 027830 29 ALELGRHKDLVESLWHAGDKLVVVDFFS--PGCG---GCKALHPKICQLAEMNPDVQFLQVNY-----EEHKSMCYSLNV 98 (218)
Q Consensus 29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya--~wC~---~C~~~~p~l~~la~~~~~v~~~~Vd~-----~~~~~l~~~~~I 98 (218)
++.+++ ++|.+.|. +++.+||.||| |||+ +|+.+.|.+.+.+.. |.+++||| .++.+||++|+|
T Consensus 3 ~v~L~~-~nF~~~v~--~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~---v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 3 CVDLDT-VTFYKVIP--KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD---LLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred eeECCh-hhHHHHHh--cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc---eEEEEEecccccchhhHHHHHHhCC
Confidence 344544 47888884 58899999999 9999 888888888766543 89999999 467889999999
Q ss_pred C--cCCEEEEEeCCC-eeEEEEecCc-cCHHHHHHHHHhh
Q 027830 99 H--VLPFFRFYRGAH-GRVCSFSCTN-ATIKKFKDALAKH 134 (218)
Q Consensus 99 ~--~~Pti~l~~~g~-~~~~~~~~g~-~~~~~l~~~l~~~ 134 (218)
+ ++||++||++|. .....|. |. ++.+.|.+||.++
T Consensus 77 ~~~gyPTl~lF~~g~~~~~~~Y~-G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 77 DKESYPVIYLFHGGDFENPVPYS-GADVTVDALQRFLKGN 115 (116)
T ss_pred CcCCCCEEEEEeCCCcCCCccCC-CCcccHHHHHHHHHhc
Confidence 9 999999999884 2356677 75 9999999999876
No 56
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.74 E-value=2.4e-17 Score=122.35 Aligned_cols=96 Identities=14% Similarity=0.183 Sum_probs=80.3
Q ss_pred HHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCee-EEE
Q 027830 38 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR-VCS 116 (218)
Q Consensus 38 ~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~-~~~ 116 (218)
+.+.+. .++.++|+||++||++|+.+.|.++++++.++.+.|..||++++++++.+|+|.++||+++|++|... ...
T Consensus 15 ~~~~l~--~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 15 FFKEMK--NPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred HHHHhC--CCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 445553 47779999999999999999999999999887799999999999999999999999999999876411 124
Q ss_pred EecCccCHHHHHHHHHhhCC
Q 027830 117 FSCTNATIKKFKDALAKHTP 136 (218)
Q Consensus 117 ~~~g~~~~~~l~~~l~~~~~ 136 (218)
+. |..+..+|.++|+..+.
T Consensus 93 ~~-G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 93 YY-GLPAGYEFASLIEDIVR 111 (113)
T ss_pred EE-ecCchHHHHHHHHHHHh
Confidence 44 77788899999987653
No 57
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.74 E-value=3.8e-17 Score=131.97 Aligned_cols=104 Identities=24% Similarity=0.351 Sum_probs=82.1
Q ss_pred cccCcEEecChhhHHHHHHhc-CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCE
Q 027830 25 VHRLALELGRHKDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF 103 (218)
Q Consensus 25 ~~~~v~~i~s~~~~~~~l~~~-~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pt 103 (218)
....+.+|+. ++|...+... .+.+|||+||++||++|+.+.|.|.+|+.+|++++|++||++.. +..|+|.++||
T Consensus 80 ~~G~v~eis~-~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPT 155 (192)
T cd02988 80 KFGEVYEISK-PDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPT 155 (192)
T ss_pred CCCeEEEeCH-HHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCE
Confidence 4577888865 5666666543 35699999999999999999999999999999999999999854 58999999999
Q ss_pred EEEEeCCCeeEEEEe------cCccCHHHHHHHHHh
Q 027830 104 FRFYRGAHGRVCSFS------CTNATIKKFKDALAK 133 (218)
Q Consensus 104 i~l~~~g~~~~~~~~------~g~~~~~~l~~~l~~ 133 (218)
+++|++|+ .+..+. +...+.++|..+|.+
T Consensus 156 lliyk~G~-~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 156 ILVYRNGD-IVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEEECCE-EEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 99999997 222222 115667777777654
No 58
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.72 E-value=5.7e-17 Score=145.97 Aligned_cols=128 Identities=25% Similarity=0.389 Sum_probs=104.8
Q ss_pred hhhhhhcCCCCCCCCCCCCcccccCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC----c
Q 027830 4 ELFFKKIKPSPREEAHPSSPLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD----V 79 (218)
Q Consensus 4 ~~~~~~~~~~~~~~~~p~~~l~~~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~----v 79 (218)
+++.|++++..+++++|.. ....+..+.. ++|.+.+.+ .++.++|+|||+||++|+.+.|.++++++.+.+ +
T Consensus 325 ~~~~g~~~~~~~se~~p~~--~~~~v~~l~~-~~f~~~v~~-~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i 400 (462)
T TIGR01130 325 DFLDGKLKPYLKSEPIPED--DEGPVKVLVG-KNFDEIVLD-ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDV 400 (462)
T ss_pred HHhcCCCCeeeccCCCCcc--CCCccEEeeC-cCHHHHhcc-CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcE
Confidence 4568889999999999865 3355666654 467777654 689999999999999999999999999998754 8
Q ss_pred EEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCe-eEEEEecCccCHHHHHHHHHhhCCCC
Q 027830 80 QFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG-RVCSFSCTNATIKKFKDALAKHTPDR 138 (218)
Q Consensus 80 ~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~-~~~~~~~g~~~~~~l~~~l~~~~~~~ 138 (218)
.|+++|++.+. +.. ++|.++||+++|++|+. ....+. |..+.+.|.+||.++....
T Consensus 401 ~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~~~ 457 (462)
T TIGR01130 401 VIAKMDATAND-VPP-FEVEGFPTIKFVPAGKKSEPVPYD-GDRTLEDFSKFIAKHATFP 457 (462)
T ss_pred EEEEEECCCCc-cCC-CCccccCEEEEEeCCCCcCceEec-CcCCHHHHHHHHHhcCCCC
Confidence 99999999875 334 99999999999998863 235555 8899999999999998644
No 59
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.72 E-value=1.2e-16 Score=111.72 Aligned_cols=91 Identities=31% Similarity=0.579 Sum_probs=79.0
Q ss_pred hHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEE
Q 027830 37 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCS 116 (218)
Q Consensus 37 ~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~ 116 (218)
+|...+.. +++++|+||++||++|+.+.+.+.++++..+++.|+.+|++.+..+++.|++.++|++++|.+|+ .+..
T Consensus 2 ~~~~~~~~--~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~-~~~~ 78 (93)
T cd02947 2 EFEELIKS--AKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK-EVDR 78 (93)
T ss_pred chHHHHhc--CCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCE-EEEE
Confidence 45666654 48999999999999999999999999998777999999999999999999999999999998885 3444
Q ss_pred EecCccCHHHHHHHH
Q 027830 117 FSCTNATIKKFKDAL 131 (218)
Q Consensus 117 ~~~g~~~~~~l~~~l 131 (218)
+. |..+.+.|.++|
T Consensus 79 ~~-g~~~~~~l~~~i 92 (93)
T cd02947 79 VV-GADPKEELEEFL 92 (93)
T ss_pred Ee-cCCCHHHHHHHh
Confidence 44 778889998887
No 60
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.71 E-value=1e-16 Score=119.74 Aligned_cols=97 Identities=12% Similarity=0.264 Sum_probs=80.5
Q ss_pred EecChhhHHHHHHhcCCCeEEEEEEC-------CCChhHHhHHHHHHHHHHHCC-CcEEEEEeCcC-------cHHHHHH
Q 027830 31 ELGRHKDLVESLWHAGDKLVVVDFFS-------PGCGGCKALHPKICQLAEMNP-DVQFLQVNYEE-------HKSMCYS 95 (218)
Q Consensus 31 ~i~s~~~~~~~l~~~~~k~vlV~Fya-------~wC~~C~~~~p~l~~la~~~~-~v~~~~Vd~~~-------~~~l~~~ 95 (218)
.+.+.++|.+.+...++++++|+||| +||++|+.+.|.+++++++++ ++.|++||+++ +..+..+
T Consensus 5 ~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 5 AVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred cccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhc
Confidence 46778899999987668899999999 999999999999999999998 59999999976 4689999
Q ss_pred CCCC-cCCEEEEEeCCCeeEEEEecCccCHHHHHHH
Q 027830 96 LNVH-VLPFFRFYRGAHGRVCSFSCTNATIKKFKDA 130 (218)
Q Consensus 96 ~~I~-~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~ 130 (218)
|+|. ++||+++|++|+ +++...+. +.+.+..|
T Consensus 85 ~~I~~~iPT~~~~~~~~-~l~~~~c~--~~~~~~~~ 117 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQ-RLVEDECL--QADLVEMF 117 (119)
T ss_pred cCcccCCCEEEEEcCCc-eecchhhc--CHHHHHHh
Confidence 9999 999999997774 66665543 34444443
No 61
>PTZ00102 disulphide isomerase; Provisional
Probab=99.71 E-value=2e-16 Score=143.62 Aligned_cols=107 Identities=21% Similarity=0.373 Sum_probs=91.2
Q ss_pred ccCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHC----CCcEEEEEeCcCcHHHHHHCCCCcC
Q 027830 26 HRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN----PDVQFLQVNYEEHKSMCYSLNVHVL 101 (218)
Q Consensus 26 ~~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~----~~v~~~~Vd~~~~~~l~~~~~I~~~ 101 (218)
...+..++. ++|...+. .++.++|+|||+||++|+++.|.|.++++.+ .++.|+.|||+.+..+|++|+|.++
T Consensus 31 ~~~v~~l~~-~~f~~~i~--~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~ 107 (477)
T PTZ00102 31 SEHVTVLTD-STFDKFIT--ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGY 107 (477)
T ss_pred CCCcEEcch-hhHHHHHh--cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcc
Confidence 345667754 47877774 4789999999999999999999999988764 3499999999999999999999999
Q ss_pred CEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCCCC
Q 027830 102 PFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDR 138 (218)
Q Consensus 102 Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 138 (218)
||+++|++|+ .+ .+. |.++.+.|.+||.++++..
T Consensus 108 Pt~~~~~~g~-~~-~y~-g~~~~~~l~~~l~~~~~~~ 141 (477)
T PTZ00102 108 PTIKFFNKGN-PV-NYS-GGRTADGIVSWIKKLTGPA 141 (477)
T ss_pred cEEEEEECCc-eE-Eec-CCCCHHHHHHHHHHhhCCC
Confidence 9999999986 33 565 8999999999999998644
No 62
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.71 E-value=1.7e-16 Score=119.40 Aligned_cols=99 Identities=18% Similarity=0.227 Sum_probs=78.5
Q ss_pred hhHHHHHHhcCC-CeEEEEEECCCChhHHhHHHHHH---HHHHHCC-CcEEEEEeCcCc-------------HHHHHHCC
Q 027830 36 KDLVESLWHAGD-KLVVVDFFSPGCGGCKALHPKIC---QLAEMNP-DVQFLQVNYEEH-------------KSMCYSLN 97 (218)
Q Consensus 36 ~~~~~~l~~~~~-k~vlV~Fya~wC~~C~~~~p~l~---~la~~~~-~v~~~~Vd~~~~-------------~~l~~~~~ 97 (218)
+++.+... .+ ++++|+|||+||++|+.+.+.+. .+.+.+. ++.++.||++.+ ..++.+|+
T Consensus 4 ~~~~~a~~--~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~ 81 (125)
T cd02951 4 EDLAEAAA--DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR 81 (125)
T ss_pred HHHHHHHH--cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence 45566664 47 89999999999999999999885 5555554 488999998864 68999999
Q ss_pred CCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830 98 VHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP 136 (218)
Q Consensus 98 I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~ 136 (218)
|.++||++||+++.|+++....|..+.+.+..+|+..+.
T Consensus 82 v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 82 VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 999999999976512455555588889999999988764
No 63
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.70 E-value=2.5e-16 Score=118.43 Aligned_cols=94 Identities=13% Similarity=0.181 Sum_probs=74.0
Q ss_pred ChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH-----------HHHHHCC----C
Q 027830 34 RHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----------SMCYSLN----V 98 (218)
Q Consensus 34 s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~-----------~l~~~~~----I 98 (218)
+.+++.+.+. +++.++|+||++||++|+.+.|.|.+++++ .++.|+.||++.+. ++.++|+ |
T Consensus 12 t~~~~~~~i~--~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i 88 (122)
T TIGR01295 12 TVVRALEALD--KKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSF 88 (122)
T ss_pred CHHHHHHHHH--cCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccC
Confidence 4457888885 488899999999999999999999999998 45778888887542 4556665 4
Q ss_pred CcCCEEEEEeCCCeeEEEEecC-ccCHHHHHHHHH
Q 027830 99 HVLPFFRFYRGAHGRVCSFSCT-NATIKKFKDALA 132 (218)
Q Consensus 99 ~~~Pti~l~~~g~~~~~~~~~g-~~~~~~l~~~l~ 132 (218)
.++||+++|++|+ .+....| ..+.++|.+|+.
T Consensus 89 ~~~PT~v~~k~Gk--~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 89 MGTPTFVHITDGK--QVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCCCEEEEEeCCe--EEEEEeCCCCCHHHHHHHhh
Confidence 5699999999996 3444446 567999998874
No 64
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.70 E-value=1.4e-16 Score=118.43 Aligned_cols=82 Identities=22% Similarity=0.417 Sum_probs=69.4
Q ss_pred CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC---C-cEEEEEeCc--CcHHHHHHCCCCcC
Q 027830 28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---D-VQFLQVNYE--EHKSMCYSLNVHVL 101 (218)
Q Consensus 28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~---~-v~~~~Vd~~--~~~~l~~~~~I~~~ 101 (218)
++++++ .++|.+.+.+ .+++++|+|||+||++|+.+.|.|+++++.+. + +.|+.+||+ .+..++++|+|+++
T Consensus 2 ~v~~l~-~~~f~~~i~~-~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~ 79 (114)
T cd02992 2 PVIVLD-AASFNSALLG-SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGY 79 (114)
T ss_pred CeEECC-HHhHHHHHhc-CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCC
Confidence 345554 4578888765 45899999999999999999999999998764 3 899999985 46789999999999
Q ss_pred CEEEEEeCCC
Q 027830 102 PFFRFYRGAH 111 (218)
Q Consensus 102 Pti~l~~~g~ 111 (218)
||+++|++|.
T Consensus 80 Pt~~lf~~~~ 89 (114)
T cd02992 80 PTLRYFPPFS 89 (114)
T ss_pred CEEEEECCCC
Confidence 9999998886
No 65
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.65 E-value=1.2e-15 Score=110.41 Aligned_cols=88 Identities=13% Similarity=0.202 Sum_probs=76.8
Q ss_pred CCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCC--cCCEEEEEeCCCeeEEEEecCccC
Q 027830 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVH--VLPFFRFYRGAHGRVCSFSCTNAT 123 (218)
Q Consensus 47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~--~~Pti~l~~~g~~~~~~~~~g~~~ 123 (218)
++++++.||++||++|+.+.+.+++++++|.+ +.|+.||+++++.++..|+|. ++|++++|++++++...+..+..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 68999999999999999999999999999976 999999999999999999999 999999999843223444434458
Q ss_pred HHHHHHHHHhh
Q 027830 124 IKKFKDALAKH 134 (218)
Q Consensus 124 ~~~l~~~l~~~ 134 (218)
.+.|.+||.+.
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 66
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.64 E-value=7.6e-16 Score=129.12 Aligned_cols=99 Identities=16% Similarity=0.344 Sum_probs=85.6
Q ss_pred hHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHH----CCC--cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCC
Q 027830 37 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM----NPD--VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 110 (218)
Q Consensus 37 ~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~----~~~--v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g 110 (218)
++..++ .+..+|+|.|||+||+.++.++|+|++.++. +|+ +.+++|||+++..++.+|.|..|||+.+|.+|
T Consensus 5 N~~~il--~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG 82 (375)
T KOG0912|consen 5 NIDSIL--DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNG 82 (375)
T ss_pred cHHHhh--ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeecc
Confidence 444555 3488999999999999999999999988774 564 99999999999999999999999999999999
Q ss_pred CeeEEEEecCccCHHHHHHHHHhhCCCC
Q 027830 111 HGRVCSFSCTNATIKKFKDALAKHTPDR 138 (218)
Q Consensus 111 ~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 138 (218)
.--..+|+ |.++.+.|.+||++++...
T Consensus 83 ~~~~rEYR-g~RsVeaL~efi~kq~s~~ 109 (375)
T KOG0912|consen 83 EMMKREYR-GQRSVEALIEFIEKQLSDP 109 (375)
T ss_pred chhhhhhc-cchhHHHHHHHHHHHhccH
Confidence 73233566 9999999999999999754
No 67
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.62 E-value=7.6e-15 Score=101.86 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=68.8
Q ss_pred EEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHH
Q 027830 50 VVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFK 128 (218)
Q Consensus 50 vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~ 128 (218)
.+..||++||++|+.+.+.++++++.++. +.++.||++++++++++|++.++||+++ +|+ ..+. |..+.++|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~---~~~~-G~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD---VEFI-GAPTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE---EEEe-cCCCHHHHH
Confidence 46789999999999999999999998864 9999999999999999999999999985 654 2344 778899999
Q ss_pred HHHHhh
Q 027830 129 DALAKH 134 (218)
Q Consensus 129 ~~l~~~ 134 (218)
++|.+.
T Consensus 76 ~~l~~~ 81 (82)
T TIGR00411 76 EAIKKR 81 (82)
T ss_pred HHHHhh
Confidence 998865
No 68
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.58 E-value=1.6e-14 Score=134.09 Aligned_cols=109 Identities=18% Similarity=0.229 Sum_probs=89.2
Q ss_pred ccCcEEecChhhHHHHHHh--cCCCeEEEEEECCCChhHHhHHHHH---HHHHHHCCCcEEEEEeCcC----cHHHHHHC
Q 027830 26 HRLALELGRHKDLVESLWH--AGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNPDVQFLQVNYEE----HKSMCYSL 96 (218)
Q Consensus 26 ~~~v~~i~s~~~~~~~l~~--~~~k~vlV~Fya~wC~~C~~~~p~l---~~la~~~~~v~~~~Vd~~~----~~~l~~~~ 96 (218)
+.....+.+.+++++.+.. ..+|+|+|+|||+||++|+.+.+.+ .++.+.++++.++++|+++ +.+++++|
T Consensus 451 ~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 451 HLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred CCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHc
Confidence 3467888999999888863 3478999999999999999998875 6788888889999999985 36889999
Q ss_pred CCCcCCEEEEEe-CCCeeE-EEEecCccCHHHHHHHHHhhC
Q 027830 97 NVHVLPFFRFYR-GAHGRV-CSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 97 ~I~~~Pti~l~~-~g~~~~-~~~~~g~~~~~~l~~~l~~~~ 135 (218)
+|.++||+++|+ +|+ .+ .....|..+.+++.++|++..
T Consensus 531 ~v~g~Pt~~~~~~~G~-~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 531 NVLGLPTILFFDAQGQ-EIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCCCCCEEEEECCCCC-CcccccccCCCCHHHHHHHHHHhc
Confidence 999999999996 554 22 233348899999999998754
No 69
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.56 E-value=7.6e-14 Score=118.46 Aligned_cols=96 Identities=11% Similarity=0.191 Sum_probs=78.7
Q ss_pred HHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC-----------cHHHHHHCCCCcCCEEEEEe
Q 027830 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------HKSMCYSLNVHVLPFFRFYR 108 (218)
Q Consensus 40 ~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~-----------~~~l~~~~~I~~~Pti~l~~ 108 (218)
..+.+..++++||+||++||++|+.+.|.|.+++++|. +.++.|+++. +..++++|||.++||+++++
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~ 237 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLAD 237 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEE
Confidence 34444568999999999999999999999999999985 6676666654 35789999999999999998
Q ss_pred CCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830 109 GAHGRVCSFSCTNATIKKFKDALAKHTP 136 (218)
Q Consensus 109 ~g~~~~~~~~~g~~~~~~l~~~l~~~~~ 136 (218)
++.+++.....|..+.++|.+.|.....
T Consensus 238 ~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 238 PDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 7334565555588999999999988765
No 70
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.55 E-value=9e-15 Score=109.17 Aligned_cols=89 Identities=25% Similarity=0.359 Sum_probs=65.6
Q ss_pred cCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC-CcEEEEEeCcCcH-HHHHHCCCCc--CCEEEEEe-CCCeeEEE---
Q 027830 45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHK-SMCYSLNVHV--LPFFRFYR-GAHGRVCS--- 116 (218)
Q Consensus 45 ~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~-~v~~~~Vd~~~~~-~l~~~~~I~~--~Pti~l~~-~g~~~~~~--- 116 (218)
..++++||+|||+||++|+.+.|.+.+....+. +..|+.||++.+. .....|++.+ +||++||. +|+ +..
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk--~~~~~~ 94 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD--VHPEII 94 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCC--Cchhhc
Confidence 468999999999999999999999998766432 3566666666553 3457899986 99999996 665 322
Q ss_pred EecCccCHHHHHHHHHhhC
Q 027830 117 FSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 117 ~~~g~~~~~~l~~~l~~~~ 135 (218)
...|..+.+.+.+.|....
T Consensus 95 ~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 95 NKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred cCCCCccccccCCCHHHHH
Confidence 2337777777777666554
No 71
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.53 E-value=9.9e-14 Score=113.98 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=74.9
Q ss_pred HHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEe
Q 027830 39 VESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFS 118 (218)
Q Consensus 39 ~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~ 118 (218)
.+.+....+..+++.||++||++|+.+.+.+++++..++++.+..||.+.+++++.+|+|.++||++++++|. + +.
T Consensus 125 ~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~-~---~~ 200 (215)
T TIGR02187 125 VELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE-E---FV 200 (215)
T ss_pred HHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE-E---EE
Confidence 3444432344455569999999999999999999999888999999999999999999999999999997664 2 44
Q ss_pred cCccCHHHHHHHHHh
Q 027830 119 CTNATIKKFKDALAK 133 (218)
Q Consensus 119 ~g~~~~~~l~~~l~~ 133 (218)
|....++|.++|.+
T Consensus 201 -G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 201 -GAYPEEQFLEYILS 214 (215)
T ss_pred -CCCCHHHHHHHHHh
Confidence 78889999999875
No 72
>PHA02125 thioredoxin-like protein
Probab=99.52 E-value=1.4e-13 Score=94.61 Aligned_cols=72 Identities=17% Similarity=0.383 Sum_probs=57.1
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHH
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDA 130 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~ 130 (218)
+++|||+||++|+.+.|.|.++. +.++.||++++.+++++|+|.++||++ +|+ .+..+.....+..+|++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~-~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTS-TLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCE-EEEEEeCCCCcHHHHHHH
Confidence 78999999999999999998763 578999999999999999999999997 453 344444224556666655
Q ss_pred H
Q 027830 131 L 131 (218)
Q Consensus 131 l 131 (218)
|
T Consensus 73 ~ 73 (75)
T PHA02125 73 L 73 (75)
T ss_pred h
Confidence 4
No 73
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.52 E-value=2e-13 Score=106.51 Aligned_cols=88 Identities=9% Similarity=0.158 Sum_probs=66.8
Q ss_pred CCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc------------HHHH-HHC---CCCcCCEEEEEeCC
Q 027830 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH------------KSMC-YSL---NVHVLPFFRFYRGA 110 (218)
Q Consensus 47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~------------~~l~-~~~---~I~~~Pti~l~~~g 110 (218)
++..+|+|||+||++|++..|.+++++++| ++.++.|+.+.. .... ..| ++.++||.++++..
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~ 128 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVN 128 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCC
Confidence 566799999999999999999999999998 466666666532 2333 345 88999999999654
Q ss_pred CeeEEEEecCccCHHHHHHHHHhhC
Q 027830 111 HGRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 111 ~~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
.+.+.....|..+.+++.+.|.+.+
T Consensus 129 G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 129 TRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCEEEEEeecccCHHHHHHHHHHhC
Confidence 2334444458999999999887653
No 74
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.1e-13 Score=123.05 Aligned_cols=144 Identities=21% Similarity=0.291 Sum_probs=106.2
Q ss_pred CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC---CcEEEEEeCcCcHHHHHHCCCCcCCEE
Q 027830 28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEHKSMCYSLNVHVLPFF 104 (218)
Q Consensus 28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~---~v~~~~Vd~~~~~~l~~~~~I~~~Pti 104 (218)
.+.+++.. +|...+.+ .+..++|.||+|||++|+.+.|.|++++..+. ++.++.+|++.+..++..++|+++||+
T Consensus 145 ~v~~l~~~-~~~~~~~~-~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~ 222 (383)
T KOG0191|consen 145 EVFELTKD-NFDETVKD-SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTL 222 (383)
T ss_pred ceEEcccc-chhhhhhc-cCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceE
Confidence 35555554 45555543 68899999999999999999999999999774 399999999999999999999999999
Q ss_pred EEEeCCCeeEEEEecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHH------------HHHHH-HhCCCceeeeCCCCCC
Q 027830 105 RFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEK------------ELLAL-AANKDLSFNYTPKPHP 171 (218)
Q Consensus 105 ~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~------------~l~~~-~~~~~~v~~y~p~~~~ 171 (218)
++|.+|.. ...+..+.++.+.++.|+++..+.......+...... .+... .....++.+|++|+.+
T Consensus 223 ~~f~~~~~-~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (383)
T KOG0191|consen 223 KLFPPGEE-DIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWCGH 301 (383)
T ss_pred EEecCCCc-ccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhhHHhhhhHhhhhcchhhc
Confidence 99998863 3444558999999999999988763111111111111 11111 2223489999999999
Q ss_pred CCC
Q 027830 172 MPA 174 (218)
Q Consensus 172 ~p~ 174 (218)
+..
T Consensus 302 ~~~ 304 (383)
T KOG0191|consen 302 CGG 304 (383)
T ss_pred ccc
Confidence 643
No 75
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.46 E-value=5.1e-13 Score=92.13 Aligned_cols=72 Identities=14% Similarity=0.259 Sum_probs=57.4
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecC-ccCHHHHH
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCT-NATIKKFK 128 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g-~~~~~~l~ 128 (218)
.|.||++||++|+.+.|.+++++++++. +.|++|| +.+.+.+|++.++||+++ +|+ .. +. | ..+.++|.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~--~~-~~-G~~~~~~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGE--LV-IM-GKIPSKEEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCE--EE-EE-eccCCHHHHH
Confidence 3789999999999999999999999875 8888887 344578899999999998 764 33 44 4 34557777
Q ss_pred HHH
Q 027830 129 DAL 131 (218)
Q Consensus 129 ~~l 131 (218)
++|
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 765
No 76
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.45 E-value=3.4e-13 Score=99.03 Aligned_cols=85 Identities=22% Similarity=0.289 Sum_probs=61.5
Q ss_pred cCCCeEEEEEECCCChhHHhHHHHHHHH---HHHCC-CcEEEEEeCcCc--------------------HHHHHHCCCCc
Q 027830 45 AGDKLVVVDFFSPGCGGCKALHPKICQL---AEMNP-DVQFLQVNYEEH--------------------KSMCYSLNVHV 100 (218)
Q Consensus 45 ~~~k~vlV~Fya~wC~~C~~~~p~l~~l---a~~~~-~v~~~~Vd~~~~--------------------~~l~~~~~I~~ 100 (218)
.++++++++||++||++|+.+.+.+.+. ...+. ++.++.++++.. .++++.|+|++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 4689999999999999999999999864 44443 478888887643 35889999999
Q ss_pred CCEEEEEe-CCCeeEEEEecCccCHHHHHHHH
Q 027830 101 LPFFRFYR-GAHGRVCSFSCTNATIKKFKDAL 131 (218)
Q Consensus 101 ~Pti~l~~-~g~~~~~~~~~g~~~~~~l~~~l 131 (218)
+||+++++ +| +++....|..+.++|.++|
T Consensus 83 tPt~~~~d~~G--~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDG--KIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTS--CEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCC--CEEEEecCCCCHHHHHhhC
Confidence 99999995 44 3444344999999998875
No 77
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.45 E-value=1.2e-12 Score=105.08 Aligned_cols=88 Identities=17% Similarity=0.293 Sum_probs=69.8
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH-----------------------HHHHHCCCCcCC
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----------------------SMCYSLNVHVLP 102 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~-----------------------~l~~~~~I~~~P 102 (218)
.+++++|+|||+||++|++..|.+.++.++ ++.++.|+.+++. .++..|++.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 589999999999999999999999999764 6888888865432 244578999999
Q ss_pred EEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830 103 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP 136 (218)
Q Consensus 103 ti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~ 136 (218)
+.++++.. |++.....|..+.+++.++|+..+.
T Consensus 145 ~t~vid~~-G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 145 ETFLIDGN-GIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred eEEEECCC-ceEEEEEecCCCHHHHHHHHHHHHH
Confidence 88877533 3566666688999999998887763
No 78
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.44 E-value=1e-12 Score=119.98 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=72.8
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEe----------------------------CcCcHHHHHH
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVN----------------------------YEEHKSMCYS 95 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd----------------------------~~~~~~l~~~ 95 (218)
++|+|||+|||+||++|+.+.|.|.++.+++. ++.|+.|. ++.+..+++.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 68999999999999999999999999999886 46665543 3456678899
Q ss_pred CCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830 96 LNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 96 ~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
|+|.++||++++..+ |+++....|..+.++|..+|+...
T Consensus 135 fgV~giPTt~IIDkd-GkIV~~~~G~~~~eeL~a~Ie~~~ 173 (521)
T PRK14018 135 LNISVYPSWAIIGKD-GDVQRIVKGSISEAQALALIRNPN 173 (521)
T ss_pred cCCCCcCeEEEEcCC-CeEEEEEeCCCCHHHHHHHHHHhh
Confidence 999999999877433 346666669999999999998443
No 79
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.42 E-value=7.2e-13 Score=88.70 Aligned_cols=59 Identities=19% Similarity=0.350 Sum_probs=54.1
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~ 111 (218)
++.||++||++|+.+.+.+++++..++++.+..+|++++++++.+|++.++||+++ +|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~ 61 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGK 61 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCE
Confidence 67899999999999999999999888889999999999999999999999999854 553
No 80
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.42 E-value=1.7e-12 Score=97.79 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=56.4
Q ss_pred hhHHHHHHhcCCCeEEEEEECCCChhHHhHHHH-HH--HHHHHC-CCcEEEEEeCcCcHHHHH--------HCCCCcCCE
Q 027830 36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPK-IC--QLAEMN-PDVQFLQVNYEEHKSMCY--------SLNVHVLPF 103 (218)
Q Consensus 36 ~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~-l~--~la~~~-~~v~~~~Vd~~~~~~l~~--------~~~I~~~Pt 103 (218)
+.+.... ..+|+++|+|||+||+.|+.|... |. ++++.. .++.++++|.++++++++ .|++.++||
T Consensus 6 eal~~Ak--~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 6 EAFEKAR--REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred HHHHHHH--HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 3444444 469999999999999999999863 32 555553 468999999998887765 358999999
Q ss_pred EEEEeCC
Q 027830 104 FRFYRGA 110 (218)
Q Consensus 104 i~l~~~g 110 (218)
++|+..+
T Consensus 84 ~vfl~~~ 90 (124)
T cd02955 84 NVFLTPD 90 (124)
T ss_pred EEEECCC
Confidence 9999654
No 81
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.42 E-value=3e-12 Score=90.96 Aligned_cols=83 Identities=11% Similarity=0.225 Sum_probs=67.5
Q ss_pred HHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEec
Q 027830 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSC 119 (218)
Q Consensus 40 ~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~ 119 (218)
+.+.+-.+..-+..|+++||++|..+.+.++++++.++++.+..+|.++.++++.+|+|.++||+++ +|+ ... .
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~--~~~-~- 78 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGE--LFG-F- 78 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCE--EEE-e-
Confidence 3333335667888999999999999999999999999999999999999999999999999999964 665 332 3
Q ss_pred CccCHHHHH
Q 027830 120 TNATIKKFK 128 (218)
Q Consensus 120 g~~~~~~l~ 128 (218)
|..+.+++.
T Consensus 79 G~~~~~e~~ 87 (89)
T cd03026 79 GRMTLEEIL 87 (89)
T ss_pred CCCCHHHHh
Confidence 555656543
No 82
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.39 E-value=3.5e-12 Score=101.35 Aligned_cols=87 Identities=16% Similarity=0.252 Sum_probs=68.6
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCc-----------------------CcHHHHHHCCCCcCC
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-----------------------EHKSMCYSLNVHVLP 102 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~-----------------------~~~~l~~~~~I~~~P 102 (218)
.+++++|+||++||++|+.+.|.++++.+. ++.++.|+.+ .+..+.+.|++.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 589999999999999999999999999764 4666666642 233566789999999
Q ss_pred EEEEEe-CCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830 103 FFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHTP 136 (218)
Q Consensus 103 ti~l~~-~g~~~~~~~~~g~~~~~~l~~~l~~~~~ 136 (218)
+.++++ +| ++.....|..+.+++.++|.+++.
T Consensus 140 ~~~~id~~G--~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 140 ETFLVDGNG--VILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eEEEEcCCc--eEEEEEeccCCHHHHHHHHHHHhh
Confidence 877774 54 455555588999999999988763
No 83
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.39 E-value=3.9e-12 Score=95.54 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=61.4
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeC-----------------------cCcHHHHHHCCCCcCC
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY-----------------------EEHKSMCYSLNVHVLP 102 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~-----------------------~~~~~l~~~~~I~~~P 102 (218)
.+++++|+||++||++|+.+.|.+.++.+.+ ++.++.|+. +.+..+++.|++.++|
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence 5889999999999999999999999999887 477776663 4456788899999999
Q ss_pred EEEEEe-CCCeeEEEEecCccCHHHH
Q 027830 103 FFRFYR-GAHGRVCSFSCTNATIKKF 127 (218)
Q Consensus 103 ti~l~~-~g~~~~~~~~~g~~~~~~l 127 (218)
+.+++. +| ++.....|..+.+.|
T Consensus 103 ~~~~ld~~G--~v~~~~~G~~~~~~~ 126 (127)
T cd03010 103 ETFLIDGDG--IIRYKHVGPLTPEVW 126 (127)
T ss_pred eEEEECCCc--eEEEEEeccCChHhc
Confidence 777774 44 455554477766543
No 84
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.39 E-value=5.9e-12 Score=99.30 Aligned_cols=88 Identities=22% Similarity=0.321 Sum_probs=73.9
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCcC----------------------cHHHHHHCCCCcC
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE----------------------HKSMCYSLNVHVL 101 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~~----------------------~~~l~~~~~I~~~ 101 (218)
.+++++|+||++||++|+...+.+.++.+++++ +.++.|+++. +..+++.|+|.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 578999999999999999999999999998864 8888888753 4577899999999
Q ss_pred CEEEEEeCCCeeEEEEecCccCHHHHHHHHHhh
Q 027830 102 PFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134 (218)
Q Consensus 102 Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~ 134 (218)
|+++++..+ |++.....|..+.+++.+++++.
T Consensus 140 P~~~lid~~-g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKD-GKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCC-CcEEEEEeCCCCHHHHHHHHHHh
Confidence 999999644 35665555889999999998764
No 85
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.39 E-value=2.7e-12 Score=91.50 Aligned_cols=64 Identities=23% Similarity=0.414 Sum_probs=53.5
Q ss_pred CCeEEEEEECCCChhHHhHHHHHHHHHHHCC---CcEEEEEeCcCc-------------------------HHHHHHCCC
Q 027830 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEH-------------------------KSMCYSLNV 98 (218)
Q Consensus 47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~---~v~~~~Vd~~~~-------------------------~~l~~~~~I 98 (218)
+|+++|+|||+||++|+...|.+.++.++|+ ++.|+.|++++. ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999998 499998887642 357788999
Q ss_pred CcCCEEEEEeCC
Q 027830 99 HVLPFFRFYRGA 110 (218)
Q Consensus 99 ~~~Pti~l~~~g 110 (218)
.++|++++++.+
T Consensus 81 ~~iP~~~lld~~ 92 (95)
T PF13905_consen 81 NGIPTLVLLDPD 92 (95)
T ss_dssp TSSSEEEEEETT
T ss_pred CcCCEEEEECCC
Confidence 999999999754
No 86
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.38 E-value=3.2e-12 Score=98.83 Aligned_cols=73 Identities=14% Similarity=0.246 Sum_probs=57.4
Q ss_pred cCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC---------CcEEEEEeCcCc-------------------------H
Q 027830 45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---------DVQFLQVNYEEH-------------------------K 90 (218)
Q Consensus 45 ~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~---------~v~~~~Vd~~~~-------------------------~ 90 (218)
..+|+++|+|||+||++|+.+.|.|.++.+++. ++.++.|+.+.+ .
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~ 102 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR 102 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH
Confidence 368999999999999999999999998776432 478888876532 2
Q ss_pred HHHHHCCCCcCCEEEEEeCCCeeEEEEe
Q 027830 91 SMCYSLNVHVLPFFRFYRGAHGRVCSFS 118 (218)
Q Consensus 91 ~l~~~~~I~~~Pti~l~~~g~~~~~~~~ 118 (218)
.++..|++.++||.++++.. |+++...
T Consensus 103 ~l~~~y~v~~iPt~vlId~~-G~Vv~~~ 129 (146)
T cd03008 103 ELEAQFSVEELPTVVVLKPD-GDVLAAN 129 (146)
T ss_pred HHHHHcCCCCCCEEEEECCC-CcEEeeC
Confidence 46788999999999999643 4566543
No 87
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.36 E-value=3.5e-12 Score=96.79 Aligned_cols=71 Identities=20% Similarity=0.331 Sum_probs=56.1
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCC----CcEEEEEeCcCc-------------------------HHHHHHC
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEH-------------------------KSMCYSL 96 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~----~v~~~~Vd~~~~-------------------------~~l~~~~ 96 (218)
.+|+++|+||++||++|+.+.|.+.++.+++. ++.++.|+++.. ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 58999999999999999999999999887654 467777776543 2456779
Q ss_pred CCCcCCEEEEEeCCCeeEEEE
Q 027830 97 NVHVLPFFRFYRGAHGRVCSF 117 (218)
Q Consensus 97 ~I~~~Pti~l~~~g~~~~~~~ 117 (218)
+|.++|++++++.+ |+++..
T Consensus 96 ~v~~iPt~~lid~~-G~iv~~ 115 (132)
T cd02964 96 KVEGIPTLVVLKPD-GDVVTT 115 (132)
T ss_pred CCCCCCEEEEECCC-CCEEch
Confidence 99999999999643 345543
No 88
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.36 E-value=4.6e-12 Score=95.75 Aligned_cols=70 Identities=17% Similarity=0.393 Sum_probs=55.6
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCC----CcEEEEEeCcCc------------------------HHHHHHCC
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEH------------------------KSMCYSLN 97 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~----~v~~~~Vd~~~~------------------------~~l~~~~~ 97 (218)
.++++||+||++||++|+.+.|.+.++.+++. ++.++.|+++.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 58899999999999999999999998877653 467777766533 35778999
Q ss_pred CCcCCEEEEEeCCCeeEEE
Q 027830 98 VHVLPFFRFYRGAHGRVCS 116 (218)
Q Consensus 98 I~~~Pti~l~~~g~~~~~~ 116 (218)
|.++|++++++.+ |+++.
T Consensus 97 v~~~P~~~lid~~-G~i~~ 114 (131)
T cd03009 97 IEGIPTLIILDAD-GEVVT 114 (131)
T ss_pred CCCCCEEEEECCC-CCEEc
Confidence 9999999999633 23543
No 89
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.32 E-value=8.4e-12 Score=113.55 Aligned_cols=104 Identities=21% Similarity=0.284 Sum_probs=86.3
Q ss_pred EEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHH---HHHHHCCCcEEEEEeCcCc----HHHHHHCCCCcCC
Q 027830 30 LELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMNPDVQFLQVNYEEH----KSMCYSLNVHVLP 102 (218)
Q Consensus 30 ~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~---~la~~~~~v~~~~Vd~~~~----~~l~~~~~I~~~P 102 (218)
..+.+..++++.+.++.+|+|+|+|||+||-.||.+.+..- +...+.+|+++.++|++++ .++.++||+-++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 67777778999998877789999999999999999998764 5566678999999999864 4677899999999
Q ss_pred EEEEEe-CCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830 103 FFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 103 ti~l~~-~g~~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
++++|. +|+ +... ..|..+.+.+.++|++..
T Consensus 537 ~~~ff~~~g~-e~~~-l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 537 TYLFFGPQGS-EPEI-LTGFLTADAFLEHLERAA 568 (569)
T ss_pred EEEEECCCCC-cCcC-CcceecHHHHHHHHHHhc
Confidence 999997 444 3333 348999999999998753
No 90
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=9.3e-13 Score=118.79 Aligned_cols=107 Identities=20% Similarity=0.360 Sum_probs=79.2
Q ss_pred cCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC---C-cEEEEEeCc--CcHHHHHHCCCCc
Q 027830 27 RLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---D-VQFLQVNYE--EHKSMCYSLNVHV 100 (218)
Q Consensus 27 ~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~---~-v~~~~Vd~~--~~~~l~~~~~I~~ 100 (218)
.+++.++- +.|...+.. +.+..+|.||++||++|+++.|.|+++++... . +.++.|||. .|..+|++|+|.+
T Consensus 39 D~ii~Ld~-~tf~~~v~~-~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 39 DPIIELDV-DTFNAAVFG-SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred CCeEEeeh-hhhHHHhcc-cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 56666654 467777765 45789999999999999999999999998754 3 899999994 6889999999999
Q ss_pred CCEEEEEeCCCee--EEEEecCccCHHHHHHHHHhhC
Q 027830 101 LPFFRFYRGAHGR--VCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 101 ~Pti~l~~~g~~~--~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
+|++++|..+..+ .-....|.....++.+.+.+.+
T Consensus 117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 117 YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 9999999765311 0111113444566666655444
No 91
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.28 E-value=3.6e-11 Score=86.90 Aligned_cols=71 Identities=25% Similarity=0.423 Sum_probs=61.1
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHC--CCcEEEEEeCcCc-----------------------HHHHHHCCCCc
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEEH-----------------------KSMCYSLNVHV 100 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~--~~v~~~~Vd~~~~-----------------------~~l~~~~~I~~ 100 (218)
.+++++|+||++||++|+...+.+.++.+++ +++.++.|+++.+ ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 3789999999999999999999999999998 5699999999875 77899999999
Q ss_pred CCEEEEEeCCCeeEEEE
Q 027830 101 LPFFRFYRGAHGRVCSF 117 (218)
Q Consensus 101 ~Pti~l~~~g~~~~~~~ 117 (218)
+|++++++.+ |+++..
T Consensus 98 ~P~~~l~d~~-g~v~~~ 113 (116)
T cd02966 98 LPTTFLIDRD-GRIRAR 113 (116)
T ss_pred cceEEEECCC-CcEEEE
Confidence 9999999543 345443
No 92
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.28 E-value=6e-11 Score=94.56 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=67.1
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc-------------HHHHHHCCC--CcCCEEEEEeCCCeeEE
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-------------KSMCYSLNV--HVLPFFRFYRGAHGRVC 115 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~-------------~~l~~~~~I--~~~Pti~l~~~g~~~~~ 115 (218)
+|+||++||++|++..|.+++++++| ++.++.|+++.. ..+...|++ .++|+.++++.. |++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~-G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVN-TLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCC-CcEE
Confidence 77899999999999999999999998 577776766532 236678995 699999999544 3443
Q ss_pred -EEecCccCHHHHHHHHHhhCCC
Q 027830 116 -SFSCTNATIKKFKDALAKHTPD 137 (218)
Q Consensus 116 -~~~~g~~~~~~l~~~l~~~~~~ 137 (218)
....|..+.++|.+.|.+.+..
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHhh
Confidence 3445999999999999888754
No 93
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.26 E-value=3.1e-11 Score=119.19 Aligned_cols=89 Identities=18% Similarity=0.290 Sum_probs=73.1
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeC---------------------------cCcHHHHHHC
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNY---------------------------EEHKSMCYSL 96 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~---------------------------~~~~~l~~~~ 96 (218)
.+|++||+|||+||++|+...|.|+++.++|++ +.++.|.+ +.+..+.+.|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 589999999999999999999999999999975 77777642 2244677899
Q ss_pred CCCcCCEEEEEe-CCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830 97 NVHVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHTP 136 (218)
Q Consensus 97 ~I~~~Pti~l~~-~g~~~~~~~~~g~~~~~~l~~~l~~~~~ 136 (218)
+|.++|++++|+ +|+ ++....|....+.|.++|.+.+.
T Consensus 499 ~V~~iPt~ilid~~G~--iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGK--LIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccceEEEECCCCe--EEEEEecccCHHHHHHHHHHHHH
Confidence 999999999994 554 55555588889999999987763
No 94
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.26 E-value=4.7e-11 Score=88.95 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=62.7
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEe---------------------CcCcHHHHHHCCCCcCCEE
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN---------------------YEEHKSMCYSLNVHVLPFF 104 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd---------------------~~~~~~l~~~~~I~~~Pti 104 (218)
.+++++|+||++||++|+.+.|.+.++++.+. +..+.+| .+.+..+++.|+|.++|++
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~ 97 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAI 97 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEE
Confidence 46899999999999999999999999988743 2222222 1345679999999999999
Q ss_pred EEEeCCCeeEEEEecCccCHHHHHHH
Q 027830 105 RFYRGAHGRVCSFSCTNATIKKFKDA 130 (218)
Q Consensus 105 ~l~~~g~~~~~~~~~g~~~~~~l~~~ 130 (218)
+++++++ +.....|..+.++|.+.
T Consensus 98 ~vid~~g--i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 98 VIVDPGG--IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEcCCC--eEEEEeccCCHHHHHhh
Confidence 9998774 44444488888888653
No 95
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.21 E-value=3.5e-10 Score=83.70 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=71.1
Q ss_pred cCCCeEEEEEECCCChhHHhHHH-HHH--HHHHHCC-CcEEEEEeCc--CcHHHHHHCCCCcCCEEEEEeCCCeeEEEEe
Q 027830 45 AGDKLVVVDFFSPGCGGCKALHP-KIC--QLAEMNP-DVQFLQVNYE--EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFS 118 (218)
Q Consensus 45 ~~~k~vlV~Fya~wC~~C~~~~p-~l~--~la~~~~-~v~~~~Vd~~--~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~ 118 (218)
..+|+++|+|+++||.+|+.+.. .|. ++.+.+. +..++.+|.+ +...++..|++.++|+++++....+.++...
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~ 94 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVW 94 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEE
Confidence 36899999999999999999975 342 4444443 4777888886 4567899999999999999975223466666
Q ss_pred cCccCHHHHHHHHHhhC
Q 027830 119 CTNATIKKFKDALAKHT 135 (218)
Q Consensus 119 ~g~~~~~~l~~~l~~~~ 135 (218)
.|..+.++|...|++..
T Consensus 95 ~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 95 SGNITPEDLLSQLIEFL 111 (114)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 69999999999998765
No 96
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.19 E-value=3.4e-10 Score=85.73 Aligned_cols=99 Identities=13% Similarity=0.019 Sum_probs=80.5
Q ss_pred hhHHHHHHhcCCCeEEEEEECC--CChhHHhHHHHHHHHHHHCC-C-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCC
Q 027830 36 KDLVESLWHAGDKLVVVDFFSP--GCGGCKALHPKICQLAEMNP-D-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 36 ~~~~~~l~~~~~k~vlV~Fya~--wC~~C~~~~p~l~~la~~~~-~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~ 111 (218)
.++.+.+.. ....+|.|-.+ -++.+....=+|.+++++|+ + ++|++||++.++.++.+|||.++||++||++|+
T Consensus 25 ~~~~~~~~~--~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk 102 (132)
T PRK11509 25 SRLDDWLTQ--APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGN 102 (132)
T ss_pred ccHHHHHhC--CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCE
Confidence 345555533 44556655544 47888888899999999998 3 999999999999999999999999999999986
Q ss_pred eeEEEEecCccCHHHHHHHHHhhCCCC
Q 027830 112 GRVCSFSCTNATIKKFKDALAKHTPDR 138 (218)
Q Consensus 112 ~~~~~~~~g~~~~~~l~~~l~~~~~~~ 138 (218)
.+....|..+.+++.++|++++...
T Consensus 103 --~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 103 --YRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred --EEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 4544448999999999999998654
No 97
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.18 E-value=2.1e-10 Score=86.16 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=57.9
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCc---------------------------CcHHHHHHC
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE---------------------------EHKSMCYSL 96 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~---------------------------~~~~l~~~~ 96 (218)
.+++++|+||++||++|++..|.|.++.++|.+ +.++.|+.+ ....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 478999999999999999999999999999874 788777541 123567789
Q ss_pred CCCcCCEEEEEeCCCeeEEEEecC
Q 027830 97 NVHVLPFFRFYRGAHGRVCSFSCT 120 (218)
Q Consensus 97 ~I~~~Pti~l~~~g~~~~~~~~~g 120 (218)
++.++|++++++.+ |++.....|
T Consensus 102 ~v~~~P~~~vid~~-G~v~~~~~G 124 (126)
T cd03012 102 GNQYWPALYLIDPT-GNVRHVHFG 124 (126)
T ss_pred CCCcCCeEEEECCC-CcEEEEEec
Confidence 99999999999533 345554433
No 98
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.14 E-value=4.1e-10 Score=86.45 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=63.5
Q ss_pred CCCeEEEEEECC-CChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------cHHHHHHCCCC--
Q 027830 46 GDKLVVVDFFSP-GCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVH-- 99 (218)
Q Consensus 46 ~~k~vlV~Fya~-wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------~~~l~~~~~I~-- 99 (218)
.+|+++|+||++ ||++|+...|.+.++.+.|. ++.++.|..+. ...+.+.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 589999999999 99999999999999988754 48887776543 34678899988
Q ss_pred -------cCCEEEEEeCCCeeEEEEecCccC--HHHHHH
Q 027830 100 -------VLPFFRFYRGAHGRVCSFSCTNAT--IKKFKD 129 (218)
Q Consensus 100 -------~~Pti~l~~~g~~~~~~~~~g~~~--~~~l~~ 129 (218)
++|+++++..+ |++.....|... ..++.+
T Consensus 107 ~~~~~~~~~P~~~lId~~-G~V~~~~~g~~~~~~~~~~~ 144 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKD-GKVVYRHVGPDPDEESDLEA 144 (146)
T ss_dssp CCTTTTSSSSEEEEEETT-SBEEEEEESSBTTSHHSHHH
T ss_pred cccccCCeecEEEEEECC-CEEEEEEeCCCCCCCCChhh
Confidence 99999888654 356665555554 444443
No 99
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.13 E-value=4.5e-10 Score=91.33 Aligned_cols=90 Identities=10% Similarity=0.126 Sum_probs=65.8
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCc-------C----cHHHHHHCCCC-------------
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE-------E----HKSMCYSLNVH------------- 99 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~-------~----~~~l~~~~~I~------------- 99 (218)
.++++||+|||+||++|+...|.|.++.++|.+ +.++.|+++ + ....++++++.
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 588999999999999999999999999999864 899999863 1 22334444431
Q ss_pred -----------------------cCC---EEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830 100 -----------------------VLP---FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP 136 (218)
Q Consensus 100 -----------------------~~P---ti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~ 136 (218)
.+| +.+++ |.+|+++.+..|..+.+.+.+.|++.+.
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflI-D~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLV-NKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEE-CCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 122 34444 3335677777688888899999988874
No 100
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.11 E-value=1.6e-10 Score=84.84 Aligned_cols=62 Identities=24% Similarity=0.442 Sum_probs=46.5
Q ss_pred CCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEe---CcC-----------------cHHHHHHCCCCcCCEEE
Q 027830 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVN---YEE-----------------HKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd---~~~-----------------~~~l~~~~~I~~~Pti~ 105 (218)
+++++|+||++||++|+...|.++++.+.+.+ +.++.+. .++ +..+.+.|++.++|+.+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~~ 100 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYAV 100 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeEE
Confidence 78999999999999999999999999888754 6666552 111 12355566777777777
Q ss_pred EEe
Q 027830 106 FYR 108 (218)
Q Consensus 106 l~~ 108 (218)
+++
T Consensus 101 vid 103 (114)
T cd02967 101 LLD 103 (114)
T ss_pred EEC
Confidence 774
No 101
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.11 E-value=5.9e-10 Score=89.25 Aligned_cols=83 Identities=8% Similarity=-0.003 Sum_probs=63.0
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEE------EEEeCcC-----------------------------cH
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQF------LQVNYEE-----------------------------HK 90 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~------~~Vd~~~-----------------------------~~ 90 (218)
.+|+++|+|||+||++|+..+|.+.++.++ ++.+ ..||.++ +.
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g 135 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG 135 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc
Confidence 599999999999999999999999999764 2333 4455442 23
Q ss_pred HHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHH
Q 027830 91 SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDA 130 (218)
Q Consensus 91 ~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~ 130 (218)
.+...|++.++|+.+|+-|.+|++.....|..+.+++.+.
T Consensus 136 ~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~ 175 (184)
T TIGR01626 136 AVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTV 175 (184)
T ss_pred hHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHH
Confidence 4567899999988854446557788777788888877663
No 102
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.8e-10 Score=93.42 Aligned_cols=137 Identities=18% Similarity=0.157 Sum_probs=101.1
Q ss_pred CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEE
Q 027830 28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107 (218)
Q Consensus 28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~ 107 (218)
.+..|...++| +.. +++..+++||++||..|+++..++..+++..+++.|++++.+..++++..+.+..+|+++++
T Consensus 2 ~v~~i~~~~~f---~~~-~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~ 77 (227)
T KOG0911|consen 2 TVQFIVFQEQF---LDQ-KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFF 77 (227)
T ss_pred CceeehhHHHH---HHh-ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeee
Confidence 46677777777 322 78999999999999999999999999999888899999999999999999999999999999
Q ss_pred eCCCeeEEEEecCccCHHHHHHHHHhhCCCCC--CCCCCC-CC----------CHHHHHHHHhCCCceeeeCCCCCC
Q 027830 108 RGAHGRVCSFSCTNATIKKFKDALAKHTPDRC--GLGPTK-GL----------EEKELLALAANKDLSFNYTPKPHP 171 (218)
Q Consensus 108 ~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~--~~~~~~-~l----------~~~~l~~~~~~~~~v~~y~p~~~~ 171 (218)
..|+ .+... .+.....+...+....+... ..+... .+ -++.++.+.+.+++|+|+++.|..
T Consensus 78 ~~~~--~v~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~ 151 (227)
T KOG0911|consen 78 FLGE--KVDRL-SGADPPFLVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEE 151 (227)
T ss_pred ecch--hhhhh-hccCcHHHHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccCeEEEEecCCCCc
Confidence 8876 22222 23334444444433332221 111111 11 123688888889999999999988
No 103
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.08 E-value=2.5e-10 Score=96.49 Aligned_cols=109 Identities=16% Similarity=0.319 Sum_probs=80.5
Q ss_pred ccCcEEecChhhHHHHHHhc-CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEE
Q 027830 26 HRLALELGRHKDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104 (218)
Q Consensus 26 ~~~v~~i~s~~~~~~~l~~~-~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti 104 (218)
...+.+|.+.++|.+.+.+. .+..|||+||-+.++.|+.+...|..||.+|+.++|++|..+..+ +...|.+..+||+
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtl 202 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTL 202 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEE
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEE
Confidence 45788999988998888542 356899999999999999999999999999999999999998765 6789999999999
Q ss_pred EEEeCCC--eeEEEEe---cCccCHHHHHHHHHhhC
Q 027830 105 RFYRGAH--GRVCSFS---CTNATIKKFKDALAKHT 135 (218)
Q Consensus 105 ~l~~~g~--~~~~~~~---~g~~~~~~l~~~l~~~~ 135 (218)
++|++|. ++++.+. ....+..+|+.||.++-
T Consensus 203 lvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 203 LVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp EEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred EEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 9999986 2222221 12566788999888775
No 104
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.08 E-value=7.1e-10 Score=77.30 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=48.0
Q ss_pred cCCCeEEEEEECCCChhHHhHHHHH---HHHHH-HCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEe
Q 027830 45 AGDKLVVVDFFSPGCGGCKALHPKI---CQLAE-MNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108 (218)
Q Consensus 45 ~~~k~vlV~Fya~wC~~C~~~~p~l---~~la~-~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~ 108 (218)
..+|+++|+|+++||+.|+.+...+ .++.+ ...++.+++||.+.........+ .++|+++|+.
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 3599999999999999999998766 34444 22458999999987665433222 7799999985
No 105
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.07 E-value=1.6e-09 Score=87.37 Aligned_cols=87 Identities=15% Similarity=0.306 Sum_probs=62.1
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCc--------------------CcHHHHHHCCCCcCCEEE
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE--------------------EHKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~--------------------~~~~l~~~~~I~~~Pti~ 105 (218)
.+++++|+||++||++|+...|.+.++.+.+ ++.++.|..+ ...++++.|++.++|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 5789999999999999999999999998765 3444444321 134677899999999988
Q ss_pred EEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830 106 FYRGAHGRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 106 l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
+++.+ |++.... .....+.+.+.++..-
T Consensus 152 lID~~-G~I~~~g-~~~~~~~le~ll~~l~ 179 (189)
T TIGR02661 152 LLDQD-GKIRAKG-LTNTREHLESLLEADR 179 (189)
T ss_pred EECCC-CeEEEcc-CCCCHHHHHHHHHHHH
Confidence 88533 3454432 3345677777776543
No 106
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.06 E-value=3.2e-09 Score=87.30 Aligned_cols=93 Identities=16% Similarity=0.248 Sum_probs=77.7
Q ss_pred HHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCc-----------CcHHHHHHCCCCcCCEEEE
Q 027830 38 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-----------EHKSMCYSLNVHVLPFFRF 106 (218)
Q Consensus 38 ~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~-----------~~~~l~~~~~I~~~Pti~l 106 (218)
-...|....++.-|++||.+.|++|+.+.|++..++++| ++.+..|++| .+..+++++||..+|++++
T Consensus 111 ~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 111 RDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred HHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 344555556888999999999999999999999999999 6777777776 3578899999999999999
Q ss_pred EeCCCeeEEEEecCccCHHHHHHHH
Q 027830 107 YRGAHGRVCSFSCTNATIKKFKDAL 131 (218)
Q Consensus 107 ~~~g~~~~~~~~~g~~~~~~l~~~l 131 (218)
+..+.++......|..+.++|.+-|
T Consensus 190 v~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 190 VNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EECCCCeEEEEeeecCCHHHHHHhh
Confidence 9876656777777999999998765
No 107
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.05 E-value=2.1e-09 Score=89.38 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=66.3
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCcC--------c---HHHH-HHCC--------------
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE--------H---KSMC-YSLN-------------- 97 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~~--------~---~~l~-~~~~-------------- 97 (218)
.++++||+||++||++|+...|.|.++.++|.+ +.++.|+++. . ...+ ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 579999999999999999999999999999864 8999888731 1 1222 2222
Q ss_pred --------------------CCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830 98 --------------------VHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 98 --------------------I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
|...|+.++++.+ |+++....|..+.++|.+.|++.+
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~-GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKN-GKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCC-CcEEEEECCCCCHHHHHHHHHHHh
Confidence 1234777777433 557666668889999999998876
No 108
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.04 E-value=8.8e-10 Score=87.43 Aligned_cols=85 Identities=26% Similarity=0.427 Sum_probs=80.1
Q ss_pred cccCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEE
Q 027830 25 VHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104 (218)
Q Consensus 25 ~~~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti 104 (218)
-++.+.+|.+..+|.+.+.+ ...|+++||-+.-..|+.+...|+.|++.|-+.+|++||+...|-++.+++|..+||+
T Consensus 64 GhG~y~ev~~Ekdf~~~~~k--S~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVLP~v 141 (211)
T KOG1672|consen 64 GHGEYEEVASEKDFFEEVKK--SEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVLPTV 141 (211)
T ss_pred CCceEEEeccHHHHHHHhhc--CceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeEeeeE
Confidence 35778999999999999865 6789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCC
Q 027830 105 RFYRGAH 111 (218)
Q Consensus 105 ~l~~~g~ 111 (218)
.+|++|+
T Consensus 142 ~l~k~g~ 148 (211)
T KOG1672|consen 142 ALFKNGK 148 (211)
T ss_pred EEEEcCE
Confidence 9999997
No 109
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.02 E-value=1.6e-09 Score=77.50 Aligned_cols=83 Identities=28% Similarity=0.461 Sum_probs=67.7
Q ss_pred CCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCc-CcHHHHHHCC--CCcCCEEEEEeCCCeeEEEEecC--
Q 027830 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYE-EHKSMCYSLN--VHVLPFFRFYRGAHGRVCSFSCT-- 120 (218)
Q Consensus 47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~-~~~~l~~~~~--I~~~Pti~l~~~g~~~~~~~~~g-- 120 (218)
++++++.||++||++|+.+.|.+.++++.+.+ +.++.+|.. .+..+...|+ +..+|+++++.++.. ..... +
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~-~~~ 109 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE-VDRLV-GGK 109 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch-hhhhh-hcc
Confidence 78999999999999999999999999999985 999999997 7889999999 999999999988863 33332 3
Q ss_pred ccCHHHHHHHH
Q 027830 121 NATIKKFKDAL 131 (218)
Q Consensus 121 ~~~~~~l~~~l 131 (218)
......+.+..
T Consensus 110 ~~~~~~~~~~~ 120 (127)
T COG0526 110 VLPKEALIDAL 120 (127)
T ss_pred cCCHHHHHHHh
Confidence 34444444433
No 110
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.01 E-value=1.1e-09 Score=82.86 Aligned_cols=89 Identities=15% Similarity=0.226 Sum_probs=53.7
Q ss_pred cCCCeEEEEEECCCChhHHhHHHHHH---HHHHHCC-CcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCC-C--eeEEE-
Q 027830 45 AGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA-H--GRVCS- 116 (218)
Q Consensus 45 ~~~k~vlV~Fya~wC~~C~~~~p~l~---~la~~~~-~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g-~--~~~~~- 116 (218)
..+|+++|+||++||++|+.+...+. ++.+... ++..+.++.+....-....+ .++||++|++.+ + .++..
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~~i~Gy 99 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRADITGR 99 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCccccccc
Confidence 47999999999999999999987653 3444332 45656666642210011233 689999999543 3 11111
Q ss_pred -----EecCccCHHHHHHHHHhh
Q 027830 117 -----FSCTNATIKKFKDALAKH 134 (218)
Q Consensus 117 -----~~~g~~~~~~l~~~l~~~ 134 (218)
|.+...+.+.|.+-+++.
T Consensus 100 ~~~~~~~y~~~~~~~~~~~m~~a 122 (130)
T cd02960 100 YSNRLYTYEPADIPLLIENMKKA 122 (130)
T ss_pred ccCccceeCcCcHHHHHHHHHHH
Confidence 222345555666655543
No 111
>PLN02412 probable glutathione peroxidase
Probab=98.99 E-value=4.6e-09 Score=83.05 Aligned_cols=90 Identities=11% Similarity=0.146 Sum_probs=66.8
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCc--------CcHHH----HHHCC--------------
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE--------EHKSM----CYSLN-------------- 97 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~--------~~~~l----~~~~~-------------- 97 (218)
.+|++||+||++||++|+...|.|.++.++|.+ +.++.|+++ ...++ +++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 579999999999999999999999999999874 888888763 21122 12211
Q ss_pred --------------------CCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830 98 --------------------VHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP 136 (218)
Q Consensus 98 --------------------I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~ 136 (218)
|.+.|+.++++.+ |+++....|..+.++|...|+..+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~-G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKE-GKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCC-CcEEEEECCCCCHHHHHHHHHHHHh
Confidence 3335787777433 4577766689999999999988764
No 112
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=6.9e-10 Score=89.55 Aligned_cols=83 Identities=13% Similarity=0.223 Sum_probs=74.1
Q ss_pred cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCcCcHHHHHHCCCC------c
Q 027830 29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVH------V 100 (218)
Q Consensus 29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~~~~~l~~~~~I~------~ 100 (218)
+.-.+..+.+++.+..+..+.|+|.|||.|.+.|+++.|.+.+|+.+|.. ++|++||+...++.+.+|+|. .
T Consensus 126 ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQ 205 (265)
T KOG0914|consen 126 IKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQ 205 (265)
T ss_pred eeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCccccc
Confidence 44555667777888887889999999999999999999999999999864 999999999999999999985 6
Q ss_pred CCEEEEEeCCC
Q 027830 101 LPFFRFYRGAH 111 (218)
Q Consensus 101 ~Pti~l~~~g~ 111 (218)
.||+++|.+|+
T Consensus 206 LPT~ilFq~gk 216 (265)
T KOG0914|consen 206 LPTYILFQKGK 216 (265)
T ss_pred CCeEEEEccch
Confidence 99999999997
No 113
>smart00594 UAS UAS domain.
Probab=98.98 E-value=1.2e-08 Score=76.58 Aligned_cols=87 Identities=11% Similarity=0.229 Sum_probs=65.2
Q ss_pred cCCCeEEEEEECCCChhHHhHHHHH-H--HHHHHCC-CcEEEEEeCc--CcHHHHHHCCCCcCCEEEEEeCCCe----eE
Q 027830 45 AGDKLVVVDFFSPGCGGCKALHPKI-C--QLAEMNP-DVQFLQVNYE--EHKSMCYSLNVHVLPFFRFYRGAHG----RV 114 (218)
Q Consensus 45 ~~~k~vlV~Fya~wC~~C~~~~p~l-~--~la~~~~-~v~~~~Vd~~--~~~~l~~~~~I~~~Pti~l~~~g~~----~~ 114 (218)
..+|.++|+|+++||..|+.+...+ . ++.+... ++.+..+|++ +...++..|++.++|++.++....| .+
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~ 104 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEW 104 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEE
Confidence 3688999999999999999987543 2 3444333 4777778875 4567899999999999999954321 34
Q ss_pred EEEecCccCHHHHHHHH
Q 027830 115 CSFSCTNATIKKFKDAL 131 (218)
Q Consensus 115 ~~~~~g~~~~~~l~~~l 131 (218)
+....|..+.++|..+|
T Consensus 105 ~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 105 VGVVEGEISPEELMTFL 121 (122)
T ss_pred eccccCCCCHHHHHHhh
Confidence 55555899999998876
No 114
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.97 E-value=7.1e-09 Score=80.54 Aligned_cols=88 Identities=14% Similarity=0.152 Sum_probs=62.4
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCc--------C---cHHHHHH-CCC-------------
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE--------E---HKSMCYS-LNV------------- 98 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~--------~---~~~l~~~-~~I------------- 98 (218)
.+|++||.|||+||++|+...|.+.++.++|. ++.++.|++. . ....+++ +++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 58899999999999999999999999999986 4899988861 1 1222222 221
Q ss_pred -------------CcCCE----EEEEeCCCeeEEEEecCccCHHHHHHHHHhh
Q 027830 99 -------------HVLPF----FRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134 (218)
Q Consensus 99 -------------~~~Pt----i~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~ 134 (218)
.++|+ .++++ .+|++.....|..+.++|...|++.
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID-~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVN-PEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEc-CCCcEEEEECCCCCHHHHHHHHHHh
Confidence 13675 44443 2245766666888888888888764
No 115
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.96 E-value=1e-08 Score=81.02 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=70.2
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC-----------------------------cHHHHH
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-----------------------------HKSMCY 94 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~-----------------------------~~~l~~ 94 (218)
.++++||+||++||+.|....+.+.++.++|+ ++.|+.|..+. +..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 57899999999999999999999999999987 48888887643 234567
Q ss_pred HCCCCcCCEEEEEeCCCeeEEEEe---------cCccCHHHHHHHHHhhCCC
Q 027830 95 SLNVHVLPFFRFYRGAHGRVCSFS---------CTNATIKKFKDALAKHTPD 137 (218)
Q Consensus 95 ~~~I~~~Pti~l~~~g~~~~~~~~---------~g~~~~~~l~~~l~~~~~~ 137 (218)
.|++..+|++++++.+ |+++... .+..+..++.+.|+..+..
T Consensus 104 ~~~v~~~P~~~lid~~-G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 104 AYGAACTPDFFLFDPD-GKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HcCCCcCCcEEEECCC-CeEEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence 8999999999999543 3454321 0224668899999888754
No 116
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.94 E-value=6.1e-09 Score=80.86 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=36.5
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCc
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE 87 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~ 87 (218)
.+|+++|+|||+||+ |+...|.|.++.++|. ++.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 589999999999999 9999999999999986 3888888753
No 117
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.93 E-value=6.3e-09 Score=69.79 Aligned_cols=69 Identities=16% Similarity=0.293 Sum_probs=53.1
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHH----HHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHH
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKK 126 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~----l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~ 126 (218)
+..||++||++|+.+.+.|++ .++.+..+|++.++. +.+.+++.++|++++. |+ . . .+.+.+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~--~--~--~g~~~~~ 68 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HK--I--I--VGFDPEK 68 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CE--E--E--eeCCHHH
Confidence 567999999999999988865 258899999987654 4567999999999874 43 2 2 2357788
Q ss_pred HHHHHH
Q 027830 127 FKDALA 132 (218)
Q Consensus 127 l~~~l~ 132 (218)
|.++|+
T Consensus 69 i~~~i~ 74 (74)
T TIGR02196 69 LDQLLE 74 (74)
T ss_pred HHHHhC
Confidence 887763
No 118
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.92 E-value=7.5e-09 Score=66.01 Aligned_cols=60 Identities=28% Similarity=0.505 Sum_probs=51.9
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHH---HCCCCcCCEEEEEeCC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCY---SLNVHVLPFFRFYRGA 110 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~---~~~I~~~Pti~l~~~g 110 (218)
++.||++||++|+.+.+.+.++.....++.+..+|++....... .+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 57899999999999999999994445569999999998876655 7899999999999776
No 119
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.88 E-value=1.4e-08 Score=69.04 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=50.8
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHH-----CCCCcCCEEEEEeCCCeeEEEEecCccCHH
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS-----LNVHVLPFFRFYRGAHGRVCSFSCTNATIK 125 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~-----~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~ 125 (218)
++.||++||++|+.+++.|.++. +.+-.+|++++...... +++.++|++ ++.+|. .. ...+..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-----~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~--~l----~~~~~~ 69 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-----AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGS--FL----TNPSAA 69 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-----CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCe--Ee----cCCCHH
Confidence 57899999999999999987663 55667888877665555 389999997 466664 22 245556
Q ss_pred HHHHHHH
Q 027830 126 KFKDALA 132 (218)
Q Consensus 126 ~l~~~l~ 132 (218)
++...|+
T Consensus 70 ~~~~~l~ 76 (77)
T TIGR02200 70 QVKAKLQ 76 (77)
T ss_pred HHHHHhh
Confidence 6766654
No 120
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.87 E-value=3.9e-08 Score=82.64 Aligned_cols=98 Identities=8% Similarity=0.143 Sum_probs=80.4
Q ss_pred HHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc-----------HHHHHHCCCCcCCEEEE
Q 027830 38 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-----------KSMCYSLNVHVLPFFRF 106 (218)
Q Consensus 38 ~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~-----------~~l~~~~~I~~~Pti~l 106 (218)
-.+.+....++.-|++||.+.|++|+++.|++..++++| ++.++.|++|.. ..+++++||..+|++++
T Consensus 141 ~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 141 KEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred HHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence 344454445778999999999999999999999999999 477777766643 56889999999999999
Q ss_pred EeCCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830 107 YRGAHGRVCSFSCTNATIKKFKDALAKHTP 136 (218)
Q Consensus 107 ~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~ 136 (218)
...+.++.....+|..+.++|.+-|...+.
T Consensus 220 v~~~t~~~~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 220 VNPKSQKMSPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred EECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence 987765677777799999999998877664
No 121
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.78 E-value=4.2e-08 Score=74.41 Aligned_cols=81 Identities=20% Similarity=0.335 Sum_probs=54.9
Q ss_pred hHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHC---CCCcCCEEEEEeCCCee
Q 027830 37 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL---NVHVLPFFRFYRGAHGR 113 (218)
Q Consensus 37 ~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~---~I~~~Pti~l~~~g~~~ 113 (218)
+....+.....+..++.|..+||+.|.+..|.+.++++..+++.+-.+..+++.++..+| |...+|++++++++ +.
T Consensus 31 ~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~-~~ 109 (129)
T PF14595_consen 31 EQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD-GK 109 (129)
T ss_dssp HHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT---
T ss_pred HHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC-CC
Confidence 444555555677889999999999999999999999999988888888888888877665 57889999999665 33
Q ss_pred EEEEe
Q 027830 114 VCSFS 118 (218)
Q Consensus 114 ~~~~~ 118 (218)
.....
T Consensus 110 ~lg~w 114 (129)
T PF14595_consen 110 ELGRW 114 (129)
T ss_dssp EEEEE
T ss_pred EeEEE
Confidence 44443
No 122
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.77 E-value=1.3e-07 Score=74.73 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=61.6
Q ss_pred CCCeEEEEEECCC-ChhHHhHHHHHHHHHHHCCCcEEEEEeCcC-----------------------cHHHHHHCCCCcC
Q 027830 46 GDKLVVVDFFSPG-CGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------------------HKSMCYSLNVHVL 101 (218)
Q Consensus 46 ~~k~vlV~Fya~w-C~~C~~~~p~l~~la~~~~~v~~~~Vd~~~-----------------------~~~l~~~~~I~~~ 101 (218)
.+|+++|+||++| |++|....+.|.++.+++.++.++.|+.+. ...+++.||+...
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~ 122 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIA 122 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeec
Confidence 4789999999999 999999999999999998778888877642 2256778888777
Q ss_pred C---------EEEEEeCCCeeEEEEec-----CccCHHHHHHHHH
Q 027830 102 P---------FFRFYRGAHGRVCSFSC-----TNATIKKFKDALA 132 (218)
Q Consensus 102 P---------ti~l~~~g~~~~~~~~~-----g~~~~~~l~~~l~ 132 (218)
| +.++++.. |++..... .....+++.++|+
T Consensus 123 ~~~~~g~~~r~tfvId~~-G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 123 EGPLKGLLARAVFVLDEN-NKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred ccccCCceeeEEEEECCC-CeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 7 76666422 33433321 2335666666654
No 123
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.77 E-value=2.1e-09 Score=87.63 Aligned_cols=100 Identities=17% Similarity=0.270 Sum_probs=83.7
Q ss_pred CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830 28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~~~~~l~~~~~I~~~Pti~ 105 (218)
+++.|+ .+++...+ ..-+++.|+|+||+.|+.+.+.|..++.--.| |.++.||++.++.+.-+|-+...|||+
T Consensus 25 ~~~~~~-eenw~~~l----~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIY 99 (248)
T KOG0913|consen 25 KLTRID-EENWKELL----TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIY 99 (248)
T ss_pred eeEEec-ccchhhhh----chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEE
Confidence 444444 45666665 44789999999999999999999999876544 999999999999999999999999999
Q ss_pred EEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830 106 FYRGAHGRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 106 l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
-.++|. .-.|. |.++..+++.|+...-
T Consensus 100 HvkDGe--Frrys-gaRdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 100 HVKDGE--FRRYS-GARDKNDFISFEEHRE 126 (248)
T ss_pred Eeeccc--ccccc-CcccchhHHHHHHhhh
Confidence 999986 55555 9999999999997654
No 124
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.74 E-value=1.7e-07 Score=78.41 Aligned_cols=96 Identities=11% Similarity=0.130 Sum_probs=76.7
Q ss_pred HHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC-----------cHHHHHHCCCCcCCEEEEEe
Q 027830 40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------HKSMCYSLNVHVLPFFRFYR 108 (218)
Q Consensus 40 ~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~-----------~~~l~~~~~I~~~Pti~l~~ 108 (218)
+.|..-.++.-|++||.+.|++|+.+.|+++.++++| ++.++-|++|. +...++++||..+|++++.+
T Consensus 136 ~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~ 214 (248)
T PRK13703 136 QAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVD 214 (248)
T ss_pred HHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEE
Confidence 3444445668899999999999999999999999998 45555555442 33467899999999999998
Q ss_pred CCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830 109 GAHGRVCSFSCTNATIKKFKDALAKHTP 136 (218)
Q Consensus 109 ~g~~~~~~~~~g~~~~~~l~~~l~~~~~ 136 (218)
.+.++.....+|..+.++|.+-|...+.
T Consensus 215 ~~t~~~~pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 215 PKSGSVRPLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred CCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence 7766677777799999999998877654
No 125
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.73 E-value=1e-07 Score=71.00 Aligned_cols=84 Identities=13% Similarity=0.242 Sum_probs=57.3
Q ss_pred ecChhhHHHHHHh--cCCCeEEEEEECC-------CChhHHhHHHHHHHHHHHCC-CcEEEEEeCcCcH-------HHHH
Q 027830 32 LGRHKDLVESLWH--AGDKLVVVDFFSP-------GCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHK-------SMCY 94 (218)
Q Consensus 32 i~s~~~~~~~l~~--~~~k~vlV~Fya~-------wC~~C~~~~p~l~~la~~~~-~v~~~~Vd~~~~~-------~l~~ 94 (218)
+...++|.+.+.. .++++++|.|+++ ||+.|....|.+++.-...+ +..|+.|.+...+ ....
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 4556778888864 5678999999954 99999999999998877765 4888888874321 2333
Q ss_pred --HCCCCcCCEEEEEeCCCeeEEE
Q 027830 95 --SLNVHVLPFFRFYRGAHGRVCS 116 (218)
Q Consensus 95 --~~~I~~~Pti~l~~~g~~~~~~ 116 (218)
.+++.++||++-+.++ +++..
T Consensus 82 ~p~~~l~~IPTLi~~~~~-~rL~e 104 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWETG-ERLVE 104 (119)
T ss_dssp --CC---SSSEEEECTSS--EEEH
T ss_pred cceeeeeecceEEEECCC-Cccch
Confidence 5999999999999776 35444
No 126
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.73 E-value=1.1e-07 Score=72.74 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=54.3
Q ss_pred CCCeEEEEEECCC-ChhHHhHHHHHHHHHHHCCCcEEEEEeCcC----------------------c-HHHHHHCCCCc-
Q 027830 46 GDKLVVVDFFSPG-CGGCKALHPKICQLAEMNPDVQFLQVNYEE----------------------H-KSMCYSLNVHV- 100 (218)
Q Consensus 46 ~~k~vlV~Fya~w-C~~C~~~~p~l~~la~~~~~v~~~~Vd~~~----------------------~-~~l~~~~~I~~- 100 (218)
.+|+++|+||+.| |++|+...+.|.++.+++.++.++.|+.+. . ..+++.|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 104 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIK 104 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeec
Confidence 4789999999999 699999999999999999888888888752 1 34566777753
Q ss_pred -----CCEEEEEeCCCeeEEEEe
Q 027830 101 -----LPFFRFYRGAHGRVCSFS 118 (218)
Q Consensus 101 -----~Pti~l~~~g~~~~~~~~ 118 (218)
.|+.++++.. |++....
T Consensus 105 ~~~~~~~~~~iid~~-G~I~~~~ 126 (143)
T cd03014 105 DLGLLARAVFVIDEN-GKVIYVE 126 (143)
T ss_pred cCCccceEEEEEcCC-CeEEEEE
Confidence 5787777422 3344433
No 127
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.72 E-value=7.7e-08 Score=77.12 Aligned_cols=89 Identities=11% Similarity=0.187 Sum_probs=61.9
Q ss_pred CCCeE-EEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC-------c-HH---H-HHHC--------------
Q 027830 46 GDKLV-VVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------H-KS---M-CYSL-------------- 96 (218)
Q Consensus 46 ~~k~v-lV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~-------~-~~---l-~~~~-------------- 96 (218)
.+|++ ++.|||+||++|+...|.|.++.++|. ++.++.|+++. . .. . .+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 46654 556799999999999999999999886 48898887631 0 11 0 1121
Q ss_pred ----------------------CCCcCCE---EEEEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830 97 ----------------------NVHVLPF---FRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 97 ----------------------~I~~~Pt---i~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
++.++|+ .+++ |.+|+++....|..+.+.+.+.|.+.+
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflI-D~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLI-DGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEE-CCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 3446784 2444 444667777668888888888888765
No 128
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.72 E-value=1.8e-07 Score=64.26 Aligned_cols=73 Identities=21% Similarity=0.357 Sum_probs=57.0
Q ss_pred EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecC-ccCHHHHHHH
Q 027830 52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCT-NATIKKFKDA 130 (218)
Q Consensus 52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g-~~~~~~l~~~ 130 (218)
|.+++++|+.|..+...++++...++ +.+-.+|..+.+++ .+|||.++|+++ -||+ ..+. | ..+.++|+.+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv~~vPalv--Ing~---~~~~-G~~p~~~el~~~ 74 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGVMSVPALV--INGK---VVFV-GRVPSKEELKEL 74 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT-SSSSEEE--ETTE---EEEE-SS--HHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCCCCCCEEE--ECCE---EEEE-ecCCCHHHHHHH
Confidence 34478889999999999999999984 88878888777776 999999999994 3775 4455 5 7788999988
Q ss_pred HH
Q 027830 131 LA 132 (218)
Q Consensus 131 l~ 132 (218)
|+
T Consensus 75 l~ 76 (76)
T PF13192_consen 75 LE 76 (76)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 129
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.72 E-value=9.4e-08 Score=72.50 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=62.2
Q ss_pred CCCeEEEEEE-CCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------cHHHHHHCCCCcC
Q 027830 46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVHVL 101 (218)
Q Consensus 46 ~~k~vlV~Fy-a~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------~~~l~~~~~I~~~ 101 (218)
.+++++|+|| +.||+.|....+.+.++.+++. ++.++.|..+. ...+++.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 4789999999 5899999999999999988774 47888776543 3457788899888
Q ss_pred ---------CEEEEEeCCCeeEEEEecCccCHHHHHHH
Q 027830 102 ---------PFFRFYRGAHGRVCSFSCTNATIKKFKDA 130 (218)
Q Consensus 102 ---------Pti~l~~~g~~~~~~~~~g~~~~~~l~~~ 130 (218)
|++++++.+ |++.....|......+.+.
T Consensus 102 ~~~~~~~~~p~~~lid~~-G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 102 KKKKYMGIERSTFLIDPD-GKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred cccccCCcceeEEEECCC-CEEEEEEecCCccchHHHH
Confidence 898888543 4555555466655555543
No 130
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.71 E-value=1e-07 Score=70.70 Aligned_cols=65 Identities=20% Similarity=0.341 Sum_probs=55.9
Q ss_pred CCCeEEEEEECC-CChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------cHHHHHHCCCC--
Q 027830 46 GDKLVVVDFFSP-GCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVH-- 99 (218)
Q Consensus 46 ~~k~vlV~Fya~-wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------~~~l~~~~~I~-- 99 (218)
.+++++|.||+. ||++|+...+.|.++.++|+ ++.++.|..+. +..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 479999999999 99999999999999998876 58998888753 34677889998
Q ss_pred ----cCCEEEEEeCC
Q 027830 100 ----VLPFFRFYRGA 110 (218)
Q Consensus 100 ----~~Pti~l~~~g 110 (218)
.+|+++++..+
T Consensus 104 ~~~~~~p~~~lid~~ 118 (124)
T PF00578_consen 104 KDTLALPAVFLIDPD 118 (124)
T ss_dssp TTSEESEEEEEEETT
T ss_pred cCCceEeEEEEECCC
Confidence 89999999765
No 131
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.63 E-value=3.8e-07 Score=72.23 Aligned_cols=89 Identities=15% Similarity=0.079 Sum_probs=63.2
Q ss_pred CCCeEEEEEE-CCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC----------------------------cHHHHH
Q 027830 46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY 94 (218)
Q Consensus 46 ~~k~vlV~Fy-a~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~----------------------------~~~l~~ 94 (218)
.+|.+||+|| +.||++|....+.|.++.++|. ++.++.|.++. ...+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 4789999999 8999999999999999998875 47777776543 224556
Q ss_pred HCCCC------cCCEEEEEeCCCeeEEEEec----CccCHHHHHHHHHhhC
Q 027830 95 SLNVH------VLPFFRFYRGAHGRVCSFSC----TNATIKKFKDALAKHT 135 (218)
Q Consensus 95 ~~~I~------~~Pti~l~~~g~~~~~~~~~----g~~~~~~l~~~l~~~~ 135 (218)
.|++. ..|+.++++.. |++..... ..++.+++.+.|++..
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~-G~I~~~~~~~~~~~~~~~~il~~l~~~~ 157 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPE-GIIRHITVNDLPVGRSVDETLRVLDALQ 157 (173)
T ss_pred HhCCccccCCceeeEEEEECCC-CeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 77776 56788888533 34444332 2346777888886653
No 132
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.61 E-value=3.5e-07 Score=64.01 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=58.5
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH----HHHHHCC--CCcCCEEEEEeCCCeeEEEEecCccCH
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK----SMCYSLN--VHVLPFFRFYRGAHGRVCSFSCTNATI 124 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~----~l~~~~~--I~~~Pti~l~~~g~~~~~~~~~g~~~~ 124 (218)
++.|+.+||++|++....|+++..++.++.+..+|++.+. ++...++ +..+|+++ .+|+ .+ | ..
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~--~i----g--g~ 72 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQK--HI----G--GC 72 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCE--EE----c--CH
Confidence 6789999999999999999999988778999999987643 4555555 47899975 4764 21 2 34
Q ss_pred HHHHHHHHhhCC
Q 027830 125 KKFKDALAKHTP 136 (218)
Q Consensus 125 ~~l~~~l~~~~~ 136 (218)
++|.++++.+++
T Consensus 73 ~~~~~~~~~~~~ 84 (85)
T PRK11200 73 TDFEAYVKENLG 84 (85)
T ss_pred HHHHHHHHHhcc
Confidence 778888887764
No 133
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.59 E-value=9.4e-08 Score=74.02 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=50.5
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHC----CCcEEEEEeCcC-------------------------cHHHHHHC
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN----PDVQFLQVNYEE-------------------------HKSMCYSL 96 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~----~~v~~~~Vd~~~-------------------------~~~l~~~~ 96 (218)
.+|.|.++|.|.||++|+.+-|.+.++.++. ..+.++-|+-|. ..+++.+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4799999999999999999999988776653 235555555432 24678899
Q ss_pred CCCcCCEEEEEeCC
Q 027830 97 NVHVLPFFRFYRGA 110 (218)
Q Consensus 97 ~I~~~Pti~l~~~g 110 (218)
+|.++|++++.+..
T Consensus 112 ~v~~iP~l~i~~~d 125 (157)
T KOG2501|consen 112 EVKGIPALVILKPD 125 (157)
T ss_pred ccCcCceeEEecCC
Confidence 99999999888644
No 134
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.58 E-value=6.6e-07 Score=83.36 Aligned_cols=142 Identities=13% Similarity=0.112 Sum_probs=105.8
Q ss_pred cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEe
Q 027830 29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108 (218)
Q Consensus 29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~ 108 (218)
+..-...+++...+.+-.+...++.|+.+.|..|..+...+++++..-+.+.+...|..++..++++|++...|+|.+++
T Consensus 348 ~l~~~~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~ 427 (555)
T TIGR03143 348 LLDDSLRQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLD 427 (555)
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEe
Confidence 33344445677777665566678889999999999999999999987666999889998899999999999999999995
Q ss_pred -CCCeeEEEEecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHhCC---CceeeeCCCCCCCCC
Q 027830 109 -GAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANK---DLSFNYTPKPHPMPA 174 (218)
Q Consensus 109 -~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~v~~y~p~~~~~p~ 174 (218)
+|...-+.|. |-..-.+|..||...+... +.-..++++..+.+..-. .+.+|++|+|..||.
T Consensus 428 ~~~~~~~i~f~-g~P~G~Ef~s~i~~i~~~~---~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~ 493 (555)
T TIGR03143 428 DDGNYTGLKFH-GVPSGHELNSFILALYNAA---GPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPD 493 (555)
T ss_pred CCCcccceEEE-ecCccHhHHHHHHHHHHhc---CCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHH
Confidence 4432225555 6667778888887776433 223455666665555432 267789999999997
No 135
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=6.2e-07 Score=69.10 Aligned_cols=90 Identities=19% Similarity=0.288 Sum_probs=68.5
Q ss_pred cCCCeEEEEEECCCChhHHhHHHHHH---HHHHHCCC-cEEEEEeCcC----------------cHHHHHHCCCCcCCEE
Q 027830 45 AGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMNPD-VQFLQVNYEE----------------HKSMCYSLNVHVLPFF 104 (218)
Q Consensus 45 ~~~k~vlV~Fya~wC~~C~~~~p~l~---~la~~~~~-v~~~~Vd~~~----------------~~~l~~~~~I~~~Pti 104 (218)
..+|..+++|-++.|.+|.++...+. ++.+-+.+ +.++.+|++. ..++++.|+++++||+
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 45999999999999999999987765 34443433 7777777642 3589999999999999
Q ss_pred EEEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830 105 RFYRGAHGRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 105 ~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
+||++. |+.+...-|....+++..-++-..
T Consensus 120 vFfdk~-Gk~Il~lPGY~ppe~Fl~vlkYVa 149 (182)
T COG2143 120 VFFDKT-GKTILELPGYMPPEQFLAVLKYVA 149 (182)
T ss_pred EEEcCC-CCEEEecCCCCCHHHHHHHHHHHH
Confidence 999543 445555558899999888776544
No 136
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=1e-06 Score=65.39 Aligned_cols=106 Identities=13% Similarity=0.144 Sum_probs=86.7
Q ss_pred EEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEe
Q 027830 30 LELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108 (218)
Q Consensus 30 ~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~ 108 (218)
-.+++..+..+.+.....+.+++-|.-+|-+.|..+...|..+++...+ +.++-+|+++-+++.+-|++...||++||-
T Consensus 6 p~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFf 85 (142)
T KOG3414|consen 6 PTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFF 85 (142)
T ss_pred cccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEE
Confidence 3567788888999888899999999999999999999999999999888 788889999999999999999999999887
Q ss_pred CCCeeEEEEecC--------ccCHHHHHHHHHhhC
Q 027830 109 GAHGRVCSFSCT--------NATIKKFKDALAKHT 135 (218)
Q Consensus 109 ~g~~~~~~~~~g--------~~~~~~l~~~l~~~~ 135 (218)
+++.-.+.+..| -.+.+++++.|+-..
T Consensus 86 n~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iy 120 (142)
T KOG3414|consen 86 NNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIY 120 (142)
T ss_pred cCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHH
Confidence 776322222222 345677777776554
No 137
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.55 E-value=8.3e-07 Score=71.38 Aligned_cols=88 Identities=8% Similarity=-0.021 Sum_probs=63.0
Q ss_pred CCCeEEEEEE-CCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC-------------------------cHHHHHHCC
Q 027830 46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLN 97 (218)
Q Consensus 46 ~~k~vlV~Fy-a~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~-------------------------~~~l~~~~~ 97 (218)
.+|++||+|| +.||+.|....+.|.++.+++. ++.++.|.++. ...+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 4789999999 9999999999999999888774 47777766542 235677888
Q ss_pred CC------cCCEEEEEe-CCCeeEEEEe----cCccCHHHHHHHHHhhC
Q 027830 98 VH------VLPFFRFYR-GAHGRVCSFS----CTNATIKKFKDALAKHT 135 (218)
Q Consensus 98 I~------~~Pti~l~~-~g~~~~~~~~----~g~~~~~~l~~~l~~~~ 135 (218)
+. ..|+.+++. +|. +.... ...+..+++.+.|+...
T Consensus 110 v~~~~~g~~~p~tfiID~~G~--I~~~~~~~~~~~~~~~~ll~~l~~~~ 156 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGV--IQAVEITDNGIGRDASELLRKIKAAQ 156 (187)
T ss_pred CcccCCCceeeEEEEECCCCE--EEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 86 458888885 443 33322 12457888887775443
No 138
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.51 E-value=3.3e-07 Score=63.38 Aligned_cols=58 Identities=16% Similarity=0.238 Sum_probs=44.5
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH-----HHHHHCCCCcCCEEEEEeCCC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----SMCYSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~-----~l~~~~~I~~~Pti~l~~~g~ 111 (218)
++.|+++||++|+.+.+.|.++.-. +.+.++.||.+.+. .+.+.+++.++|++ |.+|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 4789999999999999999998621 22778888876543 36677899999998 34664
No 139
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.48 E-value=1.5e-06 Score=66.58 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=56.3
Q ss_pred CeEEEEEE-CCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------c--HHHHHHCCCCc-
Q 027830 48 KLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------H--KSMCYSLNVHV- 100 (218)
Q Consensus 48 k~vlV~Fy-a~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------~--~~l~~~~~I~~- 100 (218)
++++|.|| ++||+.|....+.+.++.+++. ++.++.|+.+. . ..+.+.|++..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 78888887 9999999999999999998875 48888776542 2 45677788773
Q ss_pred ---CC--EEEEEeCCCeeEEEEecC----ccCHHHHHHHH
Q 027830 101 ---LP--FFRFYRGAHGRVCSFSCT----NATIKKFKDAL 131 (218)
Q Consensus 101 ---~P--ti~l~~~g~~~~~~~~~g----~~~~~~l~~~l 131 (218)
+| ++++++.+ |++.....| ..+..++.+.|
T Consensus 109 ~~~~~~~~~~lid~~-G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 109 DLGVAERAVFVIDRD-GIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred cCCCccceEEEECCC-CEEEEEEecCCcccccchhHHHHh
Confidence 33 66677432 344443333 34455555444
No 140
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.48 E-value=6e-06 Score=61.42 Aligned_cols=90 Identities=9% Similarity=0.097 Sum_probs=69.4
Q ss_pred cCCCeEEEEEECC----CChhHHhHH--HHHHHHHHHCCCcEEEEEeCcC--cHHHHHHCCCCcCCEEEEEe--CCCeeE
Q 027830 45 AGDKLVVVDFFSP----GCGGCKALH--PKICQLAEMNPDVQFLQVNYEE--HKSMCYSLNVHVLPFFRFYR--GAHGRV 114 (218)
Q Consensus 45 ~~~k~vlV~Fya~----wC~~C~~~~--p~l~~la~~~~~v~~~~Vd~~~--~~~l~~~~~I~~~Pti~l~~--~g~~~~ 114 (218)
...|.++|+||++ ||..|+... |.+.++.+. ++.+...|++. ..+++..+++.++|++.++. +++..+
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~v 92 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTI 92 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEE
Confidence 4799999999999 999997664 455555543 47788888864 45788999999999999883 444445
Q ss_pred EEEecCccCHHHHHHHHHhhCC
Q 027830 115 CSFSCTNATIKKFKDALAKHTP 136 (218)
Q Consensus 115 ~~~~~g~~~~~~l~~~l~~~~~ 136 (218)
+....|..+.++|...|.....
T Consensus 93 v~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 93 VGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEeCCCCHHHHHHHHHHHHh
Confidence 6666699999999999887653
No 141
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.47 E-value=1.5e-06 Score=66.29 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=34.1
Q ss_pred CCeEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcCc
Q 027830 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEH 89 (218)
Q Consensus 47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~~ 89 (218)
++.+|+.|++.||+.|+...+.|.++.+++. ++.++.|+.+..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 3445555569999999999999999999874 588888887653
No 142
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.44 E-value=2.2e-06 Score=69.77 Aligned_cols=89 Identities=11% Similarity=0.010 Sum_probs=64.3
Q ss_pred CCCeEEE-EEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------------cHHHHHH
Q 027830 46 GDKLVVV-DFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYS 95 (218)
Q Consensus 46 ~~k~vlV-~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------------~~~l~~~ 95 (218)
.++.++| .||++||+.|....+.|.++.+++. ++.++.|.++. +..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 3665555 6899999999999999999888774 47777665542 3456778
Q ss_pred CCCC------cCCEEEEEeCCCeeEEEEe----cCccCHHHHHHHHHhhC
Q 027830 96 LNVH------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKHT 135 (218)
Q Consensus 96 ~~I~------~~Pti~l~~~g~~~~~~~~----~g~~~~~~l~~~l~~~~ 135 (218)
||+. .+|+.++++.+ |++.... .++++.+++.+.|+...
T Consensus 106 ygv~~~~~g~~~p~~fiId~~-G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPN-QIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCC-CEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 8884 58999988643 3343322 35789999999887665
No 143
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.43 E-value=2.4e-06 Score=79.64 Aligned_cols=79 Identities=15% Similarity=0.226 Sum_probs=67.4
Q ss_pred CCeE-EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHH
Q 027830 47 DKLV-VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIK 125 (218)
Q Consensus 47 ~k~v-lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~ 125 (218)
++++ +-.|.++||++|......+++++...+++..-.||.+..++++++|+|.++|++++ ||+ +. +. |..+.+
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~--~~-~~-G~~~~~ 548 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQ--QV-YF-GKKTIE 548 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCE--EE-Ee-eCCCHH
Confidence 4454 55678999999999999999999999999999999999999999999999999975 554 22 34 677999
Q ss_pred HHHHHH
Q 027830 126 KFKDAL 131 (218)
Q Consensus 126 ~l~~~l 131 (218)
+|.++|
T Consensus 549 ~~~~~~ 554 (555)
T TIGR03143 549 EMLELI 554 (555)
T ss_pred HHHHhh
Confidence 998886
No 144
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.42 E-value=1.9e-06 Score=60.52 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=57.9
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc----HHHHHHCCC--CcCCEEEEEeCCCeeEEEEecCccCH
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH----KSMCYSLNV--HVLPFFRFYRGAHGRVCSFSCTNATI 124 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~----~~l~~~~~I--~~~Pti~l~~~g~~~~~~~~~g~~~~ 124 (218)
++.|+.+||++|.+....|.++..+++++.+..+|++.+ .++...++- .++|++. .+|+ . . |+ .
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~--~---i-gG--~ 71 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEK--H---V-GG--C 71 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCE--E---e-cC--H
Confidence 678999999999999999999987777788888888753 346666664 7899993 3664 2 2 22 4
Q ss_pred HHHHHHHHhhCCC
Q 027830 125 KKFKDALAKHTPD 137 (218)
Q Consensus 125 ~~l~~~l~~~~~~ 137 (218)
++|.++++++.+.
T Consensus 72 ~dl~~~~~~~~~~ 84 (86)
T TIGR02183 72 TDFEQLVKENFDI 84 (86)
T ss_pred HHHHHHHHhcccc
Confidence 7888888887653
No 145
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.40 E-value=1.9e-06 Score=57.39 Aligned_cols=68 Identities=21% Similarity=0.353 Sum_probs=47.5
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHC----CCCcCCEEEEEeCCCeeEEEEecCccCHHH
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL----NVHVLPFFRFYRGAHGRVCSFSCTNATIKK 126 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~----~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~ 126 (218)
++.|+++||++|+++...+.+. ++.+..+|++.+......+ ++.++|++++ +|+ .+ ++.+.+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~-~i-----~g~~~~~ 68 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE-HL-----SGFRPDK 68 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE-EE-----ecCCHHH
Confidence 5789999999999998888763 5777778887665544433 6889999975 442 12 3456667
Q ss_pred HHHHH
Q 027830 127 FKDAL 131 (218)
Q Consensus 127 l~~~l 131 (218)
|.++|
T Consensus 69 l~~~~ 73 (73)
T cd02976 69 LRALL 73 (73)
T ss_pred HHhhC
Confidence 76653
No 146
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.40 E-value=4.9e-06 Score=67.04 Aligned_cols=89 Identities=9% Similarity=0.036 Sum_probs=65.7
Q ss_pred CCCeEEEEEE-CCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC-------------------------cHHHHHHCC
Q 027830 46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLN 97 (218)
Q Consensus 46 ~~k~vlV~Fy-a~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~-------------------------~~~l~~~~~ 97 (218)
.+|.++|.|| +.||+.|....+.|.++.+++. ++.++.|..+. +..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 5789999999 9999999999999999998874 47777776542 346788899
Q ss_pred C----CcC--CEEEEEeCCCeeEEEEe----cCccCHHHHHHHHHhhC
Q 027830 98 V----HVL--PFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKHT 135 (218)
Q Consensus 98 I----~~~--Pti~l~~~g~~~~~~~~----~g~~~~~~l~~~l~~~~ 135 (218)
+ .++ |+.++++.+ |++.... ..+++.+++.+.|+...
T Consensus 110 v~~~~~g~~~r~tfIID~~-G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQ-GIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCcccCCceeeEEEEECCC-CEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 8 356 998888533 3333322 23578899988886554
No 147
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.40 E-value=3.1e-06 Score=65.48 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=52.5
Q ss_pred CCCeEEEEEECC-CChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------cHHHHHHCCCCcC
Q 027830 46 GDKLVVVDFFSP-GCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVHVL 101 (218)
Q Consensus 46 ~~k~vlV~Fya~-wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------~~~l~~~~~I~~~ 101 (218)
.+++++|+||+. ||+.|....+.+.++.+++. ++.++.|+.+. ...+.+.|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 478999999976 68889999999998888774 48888887643 3356677887654
Q ss_pred ------------CEEEEEeCCCeeEEEEecCc
Q 027830 102 ------------PFFRFYRGAHGRVCSFSCTN 121 (218)
Q Consensus 102 ------------Pti~l~~~g~~~~~~~~~g~ 121 (218)
|+.++++.. |++.....|.
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~-G~i~~~~~g~ 139 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDAD-GKIEHVFDKF 139 (154)
T ss_pred cccccccccCcceEEEEECCC-CEEEEEEcCC
Confidence 566666422 4455544343
No 148
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.38 E-value=2.3e-06 Score=68.63 Aligned_cols=41 Identities=7% Similarity=0.143 Sum_probs=36.2
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCc
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE 87 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~ 87 (218)
.+|++||.|||+||+.|+. .+.|+++.++|. ++.++.+.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 5899999999999999975 889999999986 4899999884
No 149
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.38 E-value=5.1e-06 Score=65.14 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=44.1
Q ss_pred cCCCeEEEEEECCCChhHHhHHH-HHH--HHHHHCC-CcEEEEEeCcCcHHHHHHC--------CCCcCCEEEEEeCC
Q 027830 45 AGDKLVVVDFFSPGCGGCKALHP-KIC--QLAEMNP-DVQFLQVNYEEHKSMCYSL--------NVHVLPFFRFYRGA 110 (218)
Q Consensus 45 ~~~k~vlV~Fya~wC~~C~~~~p-~l~--~la~~~~-~v~~~~Vd~~~~~~l~~~~--------~I~~~Pti~l~~~g 110 (218)
..+|+++|.++++||..|+.|.. .|. ++++.+. +..-++||.++.+++...| |..|+|+.+|+...
T Consensus 35 ~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPd 112 (163)
T PF03190_consen 35 KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPD 112 (163)
T ss_dssp HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TT
T ss_pred hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCC
Confidence 35999999999999999999885 332 4444432 3778899999999998888 78899999999654
No 150
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.34 E-value=1.4e-05 Score=58.09 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=68.3
Q ss_pred EEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcH----HHHHHCCCC-cCCE
Q 027830 30 LELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHK----SMCYSLNVH-VLPF 103 (218)
Q Consensus 30 ~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~----~l~~~~~I~-~~Pt 103 (218)
..|++.+++.+++..+.+++++|+=.++.|+-.......|++.....++ +.++.+|+-+++ .++.+|||. .-|-
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 5788999999999988899999999999999999999999999988876 999999997765 567889997 6999
Q ss_pred EEEEeCCCeeEEEEecCccCHHHH
Q 027830 104 FRFYRGAHGRVCSFSCTNATIKKF 127 (218)
Q Consensus 104 i~l~~~g~~~~~~~~~g~~~~~~l 127 (218)
++++++|+ -+....-...+.+.|
T Consensus 82 ~ili~~g~-~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 82 VILIKNGK-VVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEETTE-EEEEEEGGG-SHHHH
T ss_pred EEEEECCE-EEEECccccCCHHhc
Confidence 99999997 233333356666655
No 151
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.33 E-value=6e-06 Score=76.29 Aligned_cols=83 Identities=12% Similarity=0.197 Sum_probs=71.3
Q ss_pred CCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHH
Q 027830 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKK 126 (218)
Q Consensus 47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~ 126 (218)
+..-+..|++++|++|......+.+++...++|.+-.||...+++++++|+|.++|++++ +|+ ..+. |..+.++
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~---~~~~-g~~~~~~ 189 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGE---EFGQ-GRMTLEE 189 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCc---EEEe-cCCCHHH
Confidence 445588999999999999999999999999999999999999999999999999999964 554 2234 7788889
Q ss_pred HHHHHHhhC
Q 027830 127 FKDALAKHT 135 (218)
Q Consensus 127 l~~~l~~~~ 135 (218)
|.+.+.+..
T Consensus 190 ~~~~~~~~~ 198 (517)
T PRK15317 190 ILAKLDTGA 198 (517)
T ss_pred HHHHHhccc
Confidence 999887654
No 152
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.32 E-value=2.8e-05 Score=58.96 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=83.7
Q ss_pred cCcEEecChhhHHHHHHhcCCCeEEEEEECC--CCh-hH-HhHHHHHHHHHHHCCC--cEEEEEeCcCcHHHHHHCCCC-
Q 027830 27 RLALELGRHKDLVESLWHAGDKLVVVDFFSP--GCG-GC-KALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVH- 99 (218)
Q Consensus 27 ~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~--wC~-~C-~~~~p~l~~la~~~~~--v~~~~Vd~~~~~~l~~~~~I~- 99 (218)
..++++++.+.+.+.-. +++..+|-|.-. -|. .+ ......+.++++.|.+ +.|+.+|.++...+.+.||+.
T Consensus 2 ~~~~~l~~~~~~~~~C~--~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~ 79 (130)
T cd02983 2 PEIIELTSEDVFEETCE--EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGG 79 (130)
T ss_pred CceEEecCHHHHHhhcc--CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCc
Confidence 36788999877776653 356777777532 122 23 4667899999999975 899999999999999999995
Q ss_pred -cCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCCCCCC
Q 027830 100 -VLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCG 140 (218)
Q Consensus 100 -~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~ 140 (218)
++|++++++..+++...+. |..+.+.|.+|+++.+.....
T Consensus 80 ~~~P~v~i~~~~~~KY~~~~-~~~t~e~i~~Fv~~~l~Gkl~ 120 (130)
T cd02983 80 FGYPAMVAINFRKMKFATLK-GSFSEDGINEFLRELSYGRGP 120 (130)
T ss_pred cCCCEEEEEecccCcccccc-CccCHHHHHHHHHHHHcCCcc
Confidence 5999999977543332233 889999999999999976543
No 153
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=3e-06 Score=62.45 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=61.2
Q ss_pred cChhhHHHHHHhc-CCCeEEEEEEC--------CCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcC-------cHHHHHH
Q 027830 33 GRHKDLVESLWHA-GDKLVVVDFFS--------PGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE-------HKSMCYS 95 (218)
Q Consensus 33 ~s~~~~~~~l~~~-~~k~vlV~Fya--------~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~-------~~~l~~~ 95 (218)
...++|.+.+.+. +++.++|.|++ +||+.|.+..|++.+.-+..+. +.|+.+++.. +......
T Consensus 10 ~g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d 89 (128)
T KOG3425|consen 10 PGYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKD 89 (128)
T ss_pred chHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccC
Confidence 3456677766533 46669999995 5999999999999998887664 9999999854 2234455
Q ss_pred CCC-CcCCEEEEEeCCCeeEE
Q 027830 96 LNV-HVLPFFRFYRGAHGRVC 115 (218)
Q Consensus 96 ~~I-~~~Pti~l~~~g~~~~~ 115 (218)
.++ .++||++=|.++.++..
T Consensus 90 ~~~lt~vPTLlrw~~~~~rL~ 110 (128)
T KOG3425|consen 90 PGILTAVPTLLRWKRQPQRLD 110 (128)
T ss_pred CCceeecceeeEEcCccccch
Confidence 666 89999999975433443
No 154
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.30 E-value=3e-05 Score=61.17 Aligned_cols=103 Identities=15% Similarity=0.220 Sum_probs=80.1
Q ss_pred CcEEecChhhHHHHHHhcCCCe-EEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCC--cCCE
Q 027830 28 LALELGRHKDLVESLWHAGDKL-VVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVH--VLPF 103 (218)
Q Consensus 28 ~v~~i~s~~~~~~~l~~~~~k~-vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~--~~Pt 103 (218)
.+.+++.. .+..... .+++ +++.|+.........+...+..+++.+.+ +.|+.+|++..+.+++.+|+. .+|+
T Consensus 78 ~v~~~t~~-n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~ 154 (184)
T PF13848_consen 78 LVPELTPE-NFEKLFS--SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPA 154 (184)
T ss_dssp SCEEESTT-HHHHHHS--TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSE
T ss_pred cccccchh-hHHHHhc--CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCE
Confidence 35566643 4555542 3545 88888888888999999999999999887 999999999989999999998 8999
Q ss_pred EEEEeCCCeeEEEEecCccCHHHHHHHHHh
Q 027830 104 FRFYRGAHGRVCSFSCTNATIKKFKDALAK 133 (218)
Q Consensus 104 i~l~~~g~~~~~~~~~g~~~~~~l~~~l~~ 133 (218)
++++....++......+..+.+.|.+||++
T Consensus 155 ~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 155 LVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 999984433332222489999999999974
No 155
>PRK15000 peroxidase; Provisional
Probab=98.28 E-value=8.2e-06 Score=66.39 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=64.6
Q ss_pred CCCeEEEEEEC-CCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC----------------------------cHHHHH
Q 027830 46 GDKLVVVDFFS-PGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY 94 (218)
Q Consensus 46 ~~k~vlV~Fya-~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~----------------------------~~~l~~ 94 (218)
.++.++|+||+ .||+.|....+.|.++.+++. ++.++.|.++. ...+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 47899999999 599999999999999998875 47777777652 224566
Q ss_pred HCCCC------cCCEEEEEeCCCeeEEEEec----CccCHHHHHHHHHhhC
Q 027830 95 SLNVH------VLPFFRFYRGAHGRVCSFSC----TNATIKKFKDALAKHT 135 (218)
Q Consensus 95 ~~~I~------~~Pti~l~~~g~~~~~~~~~----g~~~~~~l~~~l~~~~ 135 (218)
.||+. .+|+.++++.. |++..... .+++.+++.+.|+...
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~-G~I~~~~~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDAN-GIVRHQVVNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCC-CEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 78887 68998888633 23333221 3578888888876543
No 156
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.28 E-value=1.5e-05 Score=56.71 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=72.2
Q ss_pred EEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC-CcEEEEEeCcCcHHHHHHCCCCcCCEEEEEe
Q 027830 30 LELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108 (218)
Q Consensus 30 ~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~-~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~ 108 (218)
.+|++.+++...+. .++.++|-|+.++|. .....|.++|+.+. ++.|+.++ +..+++++++. .|++++|+
T Consensus 2 ~~i~s~~~l~~~~~--~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~ 72 (97)
T cd02981 2 KELTSKEELEKFLD--KDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVLFK 72 (97)
T ss_pred eecCCHHHHHHHhc--cCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEEeC
Confidence 56788888877663 588999999999988 46678888998886 48888776 46677888775 48999997
Q ss_pred CCCeeEEEEecCccCHHHHHHHHHh
Q 027830 109 GAHGRVCSFSCTNATIKKFKDALAK 133 (218)
Q Consensus 109 ~g~~~~~~~~~g~~~~~~l~~~l~~ 133 (218)
+.......|. |..+.++|.+||..
T Consensus 73 ~~~~~~~~y~-g~~~~~~l~~fi~~ 96 (97)
T cd02981 73 PFEEEPVEYD-GEFTEESLVEFIKD 96 (97)
T ss_pred CcccCCccCC-CCCCHHHHHHHHHh
Confidence 6433345565 77889999999975
No 157
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.27 E-value=2e-06 Score=69.51 Aligned_cols=106 Identities=21% Similarity=0.384 Sum_probs=86.4
Q ss_pred cCcEEecChhhHHHHHHhc-CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830 27 RLALELGRHKDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 27 ~~v~~i~s~~~~~~~l~~~-~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~ 105 (218)
..|.++++..+|.+.+... +.-.++|+.|-+.-..|..+...+.=|+.+||-++|++|-.+. .....+|..+++||++
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~-~gas~~F~~n~lP~Ll 216 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSN-TGASDRFSLNVLPTLL 216 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeecc-ccchhhhcccCCceEE
Confidence 4689999999999999754 4567899999999999999999999999999999999998764 4567899999999999
Q ss_pred EEeCCCeeEEE-E------ecCccCHHHHHHHHHhhC
Q 027830 106 FYRGAHGRVCS-F------SCTNATIKKFKDALAKHT 135 (218)
Q Consensus 106 l~~~g~~~~~~-~------~~g~~~~~~l~~~l~~~~ 135 (218)
||++|. .+. | ........++..||+.+-
T Consensus 217 iYkgGe--LIgNFv~va~qlgedffa~dle~FL~e~g 251 (273)
T KOG3171|consen 217 IYKGGE--LIGNFVSVAEQLGEDFFAGDLESFLNEYG 251 (273)
T ss_pred EeeCCc--hhHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence 999987 221 1 112455677788887654
No 158
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.27 E-value=6.1e-06 Score=62.37 Aligned_cols=42 Identities=24% Similarity=0.196 Sum_probs=35.9
Q ss_pred CCCeEEEEEE-CCCChhHHhHHHHHHHHHHHC--CCcEEEEEeCc
Q 027830 46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMN--PDVQFLQVNYE 87 (218)
Q Consensus 46 ~~k~vlV~Fy-a~wC~~C~~~~p~l~~la~~~--~~v~~~~Vd~~ 87 (218)
.+++++|.|| +.||+.|....+.+.++.+++ .++.|+.|..+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d 65 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD 65 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5889999999 789999999999999999886 35888877764
No 159
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.26 E-value=5.6e-06 Score=62.83 Aligned_cols=42 Identities=24% Similarity=0.308 Sum_probs=36.2
Q ss_pred CCCeEEEEEECCCChh-HHhHHHHHHHHHHHCC-----CcEEEEEeCc
Q 027830 46 GDKLVVVDFFSPGCGG-CKALHPKICQLAEMNP-----DVQFLQVNYE 87 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~-C~~~~p~l~~la~~~~-----~v~~~~Vd~~ 87 (218)
.+++++|.||++||++ |....+.+.++.+++. ++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4789999999999998 9999999999988774 3888888764
No 160
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.26 E-value=3.5e-05 Score=66.62 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=85.3
Q ss_pred CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHH------HHHHHHHHH-C--CCcEEEEEeCcCcHHHHHHCCC
Q 027830 28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALH------PKICQLAEM-N--PDVQFLQVNYEEHKSMCYSLNV 98 (218)
Q Consensus 28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~------p~l~~la~~-~--~~v~~~~Vd~~~~~~l~~~~~I 98 (218)
.++.++. .+|.+.+.+ .+..+|+||.+--.. +... ..+-+|+.+ . .++.|+.||..++..+++++|+
T Consensus 35 RVi~Lne-KNfk~~lKk--yd~l~l~yh~p~~~d-k~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv 110 (383)
T PF01216_consen 35 RVIDLNE-KNFKRALKK--YDVLVLYYHEPVESD-KVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV 110 (383)
T ss_dssp -CEEE-T-TTHHHHHHH---SEEEEEEE--STSS-HHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred ceEEcch-hHHHHHHHh--hcEEEEEEecCCccC-HHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence 4667765 478888866 678888899886432 2222 223345443 3 4699999999999999999999
Q ss_pred CcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHh---CCCceeeeCCC
Q 027830 99 HVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAA---NKDLSFNYTPK 168 (218)
Q Consensus 99 ~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~v~~y~p~ 168 (218)
...+++.+|++|. ++.|. |.++++-|+.||...+...... -..+.++.++-. ...++-||.+.
T Consensus 111 ~E~~SiyVfkd~~--~IEyd-G~~saDtLVeFl~dl~edPVei----In~~~e~~~Fe~ied~~klIGyFk~~ 176 (383)
T PF01216_consen 111 EEEGSIYVFKDGE--VIEYD-GERSADTLVEFLLDLLEDPVEI----INNKHELKAFERIEDDIKLIGYFKSE 176 (383)
T ss_dssp -STTEEEEEETTE--EEEE--S--SHHHHHHHHHHHHSSSEEE----E-SHHHHHHHHH--SS-EEEEE-SST
T ss_pred cccCcEEEEECCc--EEEec-CccCHHHHHHHHHHhcccchhh----hcChhhhhhhhhcccceeEEEEeCCC
Confidence 9999999999975 89998 9999999999999999754321 124445555544 33377777764
No 161
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.22 E-value=3.1e-05 Score=58.18 Aligned_cols=104 Identities=15% Similarity=0.194 Sum_probs=78.4
Q ss_pred EEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCE-EEEE
Q 027830 30 LELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPF-FRFY 107 (218)
Q Consensus 30 ~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pt-i~l~ 107 (218)
..+++.-+..+.+....++.+++-|..+|-+.|.++...|.+++++..+ ..++-||+++-+++.+.|.+. -|. ++||
T Consensus 3 ~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF 81 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFF 81 (133)
T ss_dssp EEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEE
T ss_pred cccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEE
Confidence 4577888889999888999999999999999999999999999999888 788999999999999999999 777 4555
Q ss_pred eCCCeeEEEEecCc--------cCHHHHHHHHHhh
Q 027830 108 RGAHGRVCSFSCTN--------ATIKKFKDALAKH 134 (218)
Q Consensus 108 ~~g~~~~~~~~~g~--------~~~~~l~~~l~~~ 134 (218)
-+++.-.+.+..|+ .+.++|++.++-.
T Consensus 82 ~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~i 116 (133)
T PF02966_consen 82 FRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETI 116 (133)
T ss_dssp ETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHH
T ss_pred ecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHH
Confidence 46652233332222 3467777766543
No 162
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.16 E-value=2.5e-05 Score=64.98 Aligned_cols=81 Identities=19% Similarity=0.301 Sum_probs=60.9
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEe----------------------------------------
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN---------------------------------------- 85 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd---------------------------------------- 85 (218)
.++.+++.|.-+.|++|+++.+.+.++.+. ++.+..+.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 467889999999999999999999887652 23332211
Q ss_pred ----CcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhh
Q 027830 86 ----YEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134 (218)
Q Consensus 86 ----~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~ 134 (218)
++++..+++++||+++||++ |.+|+ .+ .|..+.++|.++|++.
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~--~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGT--LV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCe--Ee---eCCCCHHHHHHHHHHc
Confidence 12355788999999999998 65775 32 3778999999999865
No 163
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.13 E-value=2.2e-05 Score=63.95 Aligned_cols=86 Identities=7% Similarity=0.021 Sum_probs=59.8
Q ss_pred eEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------------cHHHHHHCCCC
Q 027830 49 LVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYSLNVH 99 (218)
Q Consensus 49 ~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------------~~~l~~~~~I~ 99 (218)
.+|+.|+++||+.|....+.|.++.+++. ++.++.|+++. +..+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 45668999999999999999999998875 48888777653 23567788875
Q ss_pred ----cC----CEEEEEeCCCeeEEEEec----CccCHHHHHHHHHhhC
Q 027830 100 ----VL----PFFRFYRGAHGRVCSFSC----TNATIKKFKDALAKHT 135 (218)
Q Consensus 100 ----~~----Pti~l~~~g~~~~~~~~~----g~~~~~~l~~~l~~~~ 135 (218)
+. |+.++++.+ |++..... .+++.+++.+.|+...
T Consensus 108 ~~~~~~~~~~r~~fiID~~-G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPD-KKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred cccCCCCceeeEEEEECCC-CeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 23 456666432 33443322 2567888888886654
No 164
>PRK13189 peroxiredoxin; Provisional
Probab=98.13 E-value=2.3e-05 Score=64.76 Aligned_cols=89 Identities=6% Similarity=0.051 Sum_probs=61.9
Q ss_pred CCC-eEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------------cHHHHHH
Q 027830 46 GDK-LVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYS 95 (218)
Q Consensus 46 ~~k-~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------------~~~l~~~ 95 (218)
.++ .+|+.|+++||+.|....+.|.++.+++. ++.++.|.++. ...+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 356 45567889999999999999999988874 47777776542 2356777
Q ss_pred CCCC-------cCCEEEEEeCCCeeEEEEec----CccCHHHHHHHHHhhC
Q 027830 96 LNVH-------VLPFFRFYRGAHGRVCSFSC----TNATIKKFKDALAKHT 135 (218)
Q Consensus 96 ~~I~-------~~Pti~l~~~g~~~~~~~~~----g~~~~~~l~~~l~~~~ 135 (218)
||+. .+|+.++++.. |++..... .+++.+++.+.|+...
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~-G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPK-GIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred hCCCccccCCCceeEEEEECCC-CeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 8875 46888888533 33433322 4677888888886543
No 165
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.12 E-value=1.9e-05 Score=54.27 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=43.0
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH-----HHHHHCCCCcCCEEEEEeCCC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----SMCYSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~-----~l~~~~~I~~~Pti~l~~~g~ 111 (218)
++.|+++||++|+.+...|.++... +.++.++.+.+. .+.+..|+.++|++ |.+|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK---PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC---cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 5779999999999999999988663 577777776542 35566788999996 45664
No 166
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.09 E-value=4.3e-05 Score=70.65 Aligned_cols=82 Identities=13% Similarity=0.252 Sum_probs=70.3
Q ss_pred CCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHH
Q 027830 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKK 126 (218)
Q Consensus 47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~ 126 (218)
+..-+..|+++.|++|......+.+++..+++|..-.||....++++++|+|.++|++++ +|+ ..+. |..+.++
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~---~~~~-g~~~~~~ 190 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGE---EFHN-GRMDLAE 190 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCc---EEEe-cCCCHHH
Confidence 445688999999999999999999999999999999999999999999999999999965 554 2233 7788888
Q ss_pred HHHHHHhh
Q 027830 127 FKDALAKH 134 (218)
Q Consensus 127 l~~~l~~~ 134 (218)
+.+.+.+.
T Consensus 191 ~~~~l~~~ 198 (515)
T TIGR03140 191 LLEKLEET 198 (515)
T ss_pred HHHHHhhc
Confidence 88888765
No 167
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.09 E-value=4.7e-05 Score=58.03 Aligned_cols=39 Identities=33% Similarity=0.722 Sum_probs=32.6
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEE
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV 84 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~V 84 (218)
..+.+++.|+.++|++|+.+.+.+.++...++++.+..+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEE
Confidence 467899999999999999999999998887776555443
No 168
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.07 E-value=4.8e-05 Score=64.28 Aligned_cols=88 Identities=9% Similarity=0.013 Sum_probs=64.1
Q ss_pred CCCeEEEEEE-CCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC----------------------------cHHHHH
Q 027830 46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY 94 (218)
Q Consensus 46 ~~k~vlV~Fy-a~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~----------------------------~~~l~~ 94 (218)
.++.+++.|| +.||+.|....+.|.++.+++. ++.++.|.+|. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4677888888 8999999999999999988874 46777666543 245778
Q ss_pred HCCCC-----cCCEEEEEe-CCCeeEEEEe----cCccCHHHHHHHHHhhC
Q 027830 95 SLNVH-----VLPFFRFYR-GAHGRVCSFS----CTNATIKKFKDALAKHT 135 (218)
Q Consensus 95 ~~~I~-----~~Pti~l~~-~g~~~~~~~~----~g~~~~~~l~~~l~~~~ 135 (218)
.||+. ..|+.++++ +|. +.... ..+++.+++.+.|+...
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~--I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGV--VKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCE--EEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 88985 589999886 444 33221 24678888888876544
No 169
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.03 E-value=4.3e-05 Score=62.86 Aligned_cols=89 Identities=9% Similarity=0.080 Sum_probs=63.3
Q ss_pred CCCe-EEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------------cHHHHHH
Q 027830 46 GDKL-VVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYS 95 (218)
Q Consensus 46 ~~k~-vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------------~~~l~~~ 95 (218)
.++. +|+.|+++||+.|....+.|.++.++|. ++.++.|.++. +..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 3555 5789999999999999999999999874 58888777653 2346777
Q ss_pred CCCC-------cCCEEEEEeC-CCeeEEEE--ecCccCHHHHHHHHHhh
Q 027830 96 LNVH-------VLPFFRFYRG-AHGRVCSF--SCTNATIKKFKDALAKH 134 (218)
Q Consensus 96 ~~I~-------~~Pti~l~~~-g~~~~~~~--~~g~~~~~~l~~~l~~~ 134 (218)
||+. .+|+++++.. |+.+...+ ...+++.+++.+.|+..
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8873 6799998863 43222221 11356788888888754
No 170
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.99 E-value=6e-05 Score=62.00 Aligned_cols=89 Identities=9% Similarity=0.040 Sum_probs=62.2
Q ss_pred CCCeEE-EEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------------cHHHHHH
Q 027830 46 GDKLVV-VDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYS 95 (218)
Q Consensus 46 ~~k~vl-V~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------------~~~l~~~ 95 (218)
.+|.++ +.|+++||+.|....+.|.++.+++. ++.++.|+++. +..+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 355544 58899999999999999999998874 57887777653 2356677
Q ss_pred CCCC-------cCCEEEEEeCCCeeEEEEe----cCccCHHHHHHHHHhhC
Q 027830 96 LNVH-------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKHT 135 (218)
Q Consensus 96 ~~I~-------~~Pti~l~~~g~~~~~~~~----~g~~~~~~l~~~l~~~~ 135 (218)
||+. ..|+.++++.+ |++.... ..+++.+++.+.|+...
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~-G~Ir~~~~~~~~~gr~~~eilr~l~alq 161 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDK-GTVRLILYYPMEIGRNIDEILRAIRALQ 161 (215)
T ss_pred cCCcccccCCceeEEEEEECCC-CEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 7863 36888888533 2333321 24678999998887653
No 171
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.98 E-value=4.9e-05 Score=52.37 Aligned_cols=58 Identities=19% Similarity=0.304 Sum_probs=43.0
Q ss_pred CCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc---HHHHHHCCCCcCCEEEEEeCCC
Q 027830 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH---KSMCYSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~---~~l~~~~~I~~~Pti~l~~~g~ 111 (218)
++.-++.|+.+||++|++.+..|++. ++.+..+|++++ ..+....+...+|.+. .+|+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~ 66 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGK 66 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCE
Confidence 34447789999999999999988653 566777787655 3455556889999994 3664
No 172
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.96 E-value=5.8e-05 Score=60.99 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=54.4
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEE-----------------------------------------
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV----------------------------------------- 84 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~V----------------------------------------- 84 (218)
..+..++.|+.++|++|+++.+.+.+ ...++.+..+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 36799999999999999999998876 1122222221
Q ss_pred ----eCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHH
Q 027830 85 ----NYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL 131 (218)
Q Consensus 85 ----d~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l 131 (218)
+++++..+++++||+++|+++ |.+|+ . .. |..+.++|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~--~--~~-G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGR--V--VP-GAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCe--E--ec-CCCCHHHHHhhC
Confidence 112345778899999999997 76775 2 22 667778887764
No 173
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.94 E-value=5.4e-05 Score=49.16 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=41.6
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHH----HHCCCCcCCEEEEEeCCC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC----YSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~----~~~~I~~~Pti~l~~~g~ 111 (218)
++.|+.+||++|+.....|++. ++.+-.+|++.+++.. +..+..++|++.+ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence 5779999999999999888443 4888888888765433 3349999999975 653
No 174
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.94 E-value=0.00011 Score=59.57 Aligned_cols=89 Identities=13% Similarity=0.102 Sum_probs=61.8
Q ss_pred CCCeEEEEEEC-CCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC----------------------------cHHHHH
Q 027830 46 GDKLVVVDFFS-PGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY 94 (218)
Q Consensus 46 ~~k~vlV~Fya-~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~----------------------------~~~l~~ 94 (218)
.++.++|+||+ .||+.|....+.+.++.+++. ++.++.|+++. ...+++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 47899999995 889999988899999988876 57888777652 234677
Q ss_pred HCCCC------cCCEEEEEeCCCeeEEEEe----cCccCHHHHHHHHHhhC
Q 027830 95 SLNVH------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKHT 135 (218)
Q Consensus 95 ~~~I~------~~Pti~l~~~g~~~~~~~~----~g~~~~~~l~~~l~~~~ 135 (218)
.||+. .+|+.++++.. +++.... ..+++.+++.+.|....
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~-G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPK-GMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred HcCCcccCCCceEEEEEEECCC-CEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 88875 36788888543 3443322 13456777777665443
No 175
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.88 E-value=0.0002 Score=60.26 Aligned_cols=84 Identities=13% Similarity=0.253 Sum_probs=58.9
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeC---------------------------------------
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY--------------------------------------- 86 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~--------------------------------------- 86 (218)
..+.+++.|.-+.|++|+++...+.++.+. .+|.+..+..
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 466789999999999999999998877654 2344333221
Q ss_pred -----------cCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHH
Q 027830 87 -----------EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALA 132 (218)
Q Consensus 87 -----------~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~ 132 (218)
+++..+.+++||+++|+|++-+ |+|++.... |..+.++|.+.|.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d-~~G~~~~v~-G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMD-KDGTLQQVV-GLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEEC-CCCCEEEec-CCCCHHHHHHHhC
Confidence 0123467789999999998874 334443444 7778898888774
No 176
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.87 E-value=0.00016 Score=58.12 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=79.4
Q ss_pred cCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEE
Q 027830 27 RLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 106 (218)
Q Consensus 27 ~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l 106 (218)
..|..|+..+...+....+.+-.|+|+.|...-+.|.-+...|++++.+|+.++|++|-.+..- -.|--...||+++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cI---pNYPe~nlPTl~V 167 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCI---PNYPESNLPTLLV 167 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEeccccccc---CCCcccCCCeEEE
Confidence 5577777765555555555677899999999999999999999999999999999998765432 3455678999999
Q ss_pred EeCCC--eeEE---EEecCccCHHHHHHHHHhhC
Q 027830 107 YRGAH--GRVC---SFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 107 ~~~g~--~~~~---~~~~g~~~~~~l~~~l~~~~ 135 (218)
|..|. ++.+ .+.+-+.+.+++..+|-+.-
T Consensus 168 Y~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 168 YHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred eecchHHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence 99886 2222 22323567888888876654
No 177
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.86 E-value=5.8e-05 Score=52.35 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=58.7
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHH
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDA 130 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~ 130 (218)
++.|..+.|.-|..+...+.++....+ +.+-.||+++++.+..+|+. .+|.+.+=..++........+..+.+.|.+|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~ 79 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRAW 79 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHHH
Confidence 678999999999999999998766543 89999999999999999995 8999654321110001222267899999999
Q ss_pred HH
Q 027830 131 LA 132 (218)
Q Consensus 131 l~ 132 (218)
|+
T Consensus 80 L~ 81 (81)
T PF05768_consen 80 LE 81 (81)
T ss_dssp HH
T ss_pred hC
Confidence 85
No 178
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.84 E-value=0.00024 Score=49.37 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=53.2
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHH---HHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHH
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC---YSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKF 127 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~---~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l 127 (218)
+..|..+||++|++.+..|.+ .++.|-.+|++.+++.. +..|...+|++++ ++. .+ .+.+.+.|
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~-~~-----~Gf~~~~l 69 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL-SW-----SGFRPDMI 69 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE-EE-----ecCCHHHH
Confidence 567899999999999988855 36888899998776533 3457789999954 442 12 46778888
Q ss_pred HHHHHhhC
Q 027830 128 KDALAKHT 135 (218)
Q Consensus 128 ~~~l~~~~ 135 (218)
.+.+..+.
T Consensus 70 ~~~~~~~~ 77 (81)
T PRK10329 70 NRLHPAPH 77 (81)
T ss_pred HHHHHhhh
Confidence 88877654
No 179
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.81 E-value=7.8e-05 Score=49.13 Aligned_cols=54 Identities=19% Similarity=0.283 Sum_probs=40.4
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHH----HHHCCCCcCCEEEEEeCCC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l----~~~~~I~~~Pti~l~~~g~ 111 (218)
++.|+++||++|+.+...|.+.. +.+..+|++.+.+. .+..+...+|++ |.+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~ 59 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQI--FINGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 56799999999999999988764 67778888776543 334567788877 34654
No 180
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.73 E-value=0.00014 Score=49.12 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=47.2
Q ss_pred EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHC---CCCcCCEEEEEeCCCeeEEEEecCccCHHHHH
Q 027830 52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL---NVHVLPFFRFYRGAHGRVCSFSCTNATIKKFK 128 (218)
Q Consensus 52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~---~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~ 128 (218)
..|..+||++|+..+..|++. ++.|-.+|+++++.....+ |..++|++++ +|...+ ++.+.+.|.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~~~-----~G~~~~~~~ 69 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDLSW-----SGFRPDKLK 69 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCcEE-----eccCHHHHH
Confidence 568899999999999988753 6788888988877655544 8889999744 443112 456666665
Q ss_pred H
Q 027830 129 D 129 (218)
Q Consensus 129 ~ 129 (218)
+
T Consensus 70 ~ 70 (72)
T TIGR02194 70 A 70 (72)
T ss_pred h
Confidence 4
No 181
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.72 E-value=0.00011 Score=53.06 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=37.2
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHH-------HHHHCCCCcCCEEEEEeCCC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS-------MCYSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~-------l~~~~~I~~~Pti~l~~~g~ 111 (218)
++.|..+||++|++....|.++ ++.+..+|++.+++ +.+..|...+|.+ |.+|+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~ 70 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGK 70 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCE
Confidence 6669999999999999888765 34445555554422 3334467899997 45664
No 182
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.72 E-value=0.003 Score=47.06 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=72.0
Q ss_pred CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHH-HH---CCCcEEEEEeCc-----CcHHHHHHCCC
Q 027830 28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EM---NPDVQFLQVNYE-----EHKSMCYSLNV 98 (218)
Q Consensus 28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la-~~---~~~v~~~~Vd~~-----~~~~l~~~~~I 98 (218)
..+.+++. .|...+.+ .+.+||.|=..+ +--.-+..|.+++ +. -+++-++.|-+. +|.+++++|+|
T Consensus 5 G~v~LD~~-tFdKvi~k--f~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i 79 (126)
T PF07912_consen 5 GCVPLDEL-TFDKVIPK--FKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKI 79 (126)
T ss_dssp TSEEESTT-HHHHHGGG--SSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-
T ss_pred ceeeccce-ehhheecc--CceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCC
Confidence 34556554 57777744 789999996544 2223345666666 32 345888888774 48899999999
Q ss_pred --CcCCEEEEEeCCCeeEEEE--ecCccCHHHHHHHHHhhCCCC
Q 027830 99 --HVLPFFRFYRGAHGRVCSF--SCTNATIKKFKDALAKHTPDR 138 (218)
Q Consensus 99 --~~~Pti~l~~~g~~~~~~~--~~g~~~~~~l~~~l~~~~~~~ 138 (218)
..+|.+++|..|....+.+ . +..+.+.|..|+.++.+..
T Consensus 80 ~ke~fPv~~LF~~~~~~pv~~p~~-~~~t~~~l~~fvk~~t~~y 122 (126)
T PF07912_consen 80 DKEDFPVIYLFVGDKEEPVRYPFD-GDVTADNLQRFVKSNTGLY 122 (126)
T ss_dssp SCCC-SEEEEEESSTTSEEEE-TC-S-S-HHHHHHHHHHTSS--
T ss_pred CcccCCEEEEecCCCCCCccCCcc-CCccHHHHHHHHHhCCCee
Confidence 5699999999776677877 4 7899999999999997643
No 183
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.70 E-value=0.00066 Score=52.36 Aligned_cols=81 Identities=21% Similarity=0.377 Sum_probs=60.8
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHC--CC-cEEEEEeCcC----------------------------------
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN--PD-VQFLQVNYEE---------------------------------- 88 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~--~~-v~~~~Vd~~~---------------------------------- 88 (218)
..+.+|+.|+...|++|+.+.+.+.++.+++ ++ +.|...++-.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 4678999999999999999999999998887 44 7777765410
Q ss_pred ----------------------------------cHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHh
Q 027830 89 ----------------------------------HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK 133 (218)
Q Consensus 89 ----------------------------------~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~ 133 (218)
....+++++|.++|||++ +|+ .. . +..+.++|.+.|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~--~~--~-~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGK--YV--V-GPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTC--EE--E-TTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCE--Ee--C-CCCCHHHHHHHHcC
Confidence 012345678999999987 776 22 3 78999999999875
No 184
>PHA03050 glutaredoxin; Provisional
Probab=97.69 E-value=0.00015 Score=53.24 Aligned_cols=59 Identities=10% Similarity=0.124 Sum_probs=41.2
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC-c----HHHHHHCCCCcCCEEEEEeCCC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-H----KSMCYSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~-~----~~l~~~~~I~~~Pti~l~~~g~ 111 (218)
++.|..+||++|++....|+++.-.++.+..+.||-.. . ..+.+..|..++|++ |.+|+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~ 78 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKT 78 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCE
Confidence 66799999999999999998876544444555554311 2 345566788899999 34664
No 185
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.69 E-value=0.00032 Score=47.15 Aligned_cols=66 Identities=11% Similarity=0.244 Sum_probs=45.7
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHH---HHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHH
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS---MCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKF 127 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~---l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l 127 (218)
++.|..+||+.|.+.+..|.+. ++.+..+|++.+.. +....|...+|.+ |.+|+ .+ | ..++|
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~--~i----g--g~~~l 67 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGE--LI----G--GSDDL 67 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCE--EE----e--CHHHH
Confidence 6779999999999998888753 56777777766542 3344588899997 44664 22 2 24666
Q ss_pred HHHH
Q 027830 128 KDAL 131 (218)
Q Consensus 128 ~~~l 131 (218)
.+||
T Consensus 68 ~~~l 71 (72)
T cd03029 68 EKYF 71 (72)
T ss_pred HHHh
Confidence 6665
No 186
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.60 E-value=0.00084 Score=52.81 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCc-cCHHHHHHHHHhhCCCCCCC
Q 027830 64 ALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN-ATIKKFKDALAKHTPDRCGL 141 (218)
Q Consensus 64 ~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~-~~~~~l~~~l~~~~~~~~~~ 141 (218)
.+...|.++++.+.+ +.|+.++ +.++++.+++.. |++++|+++.++...|. |. .+.++|.+||..+.-
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~-~~~~~~~~l~~fI~~~~~----- 76 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYD-GDKFTPEELKKFIKKNSF----- 76 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEES-SSTTSHHHHHHHHHHHSS-----
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecc-cccCCHHHHHHHHHHhcc-----
Confidence 345678889998874 9999887 677899999999 99999998655567777 55 799999999999984
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 027830 142 GPTKGLEEKELLALAANKD 160 (218)
Q Consensus 142 ~~~~~l~~~~l~~~~~~~~ 160 (218)
+.+..++.+++..+...+.
T Consensus 77 P~v~~~t~~n~~~~~~~~~ 95 (184)
T PF13848_consen 77 PLVPELTPENFEKLFSSPK 95 (184)
T ss_dssp TSCEEESTTHHHHHHSTSS
T ss_pred ccccccchhhHHHHhcCCC
Confidence 3467778888888888763
No 187
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.58 E-value=0.0002 Score=49.00 Aligned_cols=54 Identities=15% Similarity=0.306 Sum_probs=39.2
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHH----HHHCCCCcCCEEEEEeCCC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l----~~~~~I~~~Pti~l~~~g~ 111 (218)
++.|+.+||++|......|++. ++.+-.+|++.++.. .+..+..++|++ |.+|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 3568999999999999999764 456666677666544 344577899997 34664
No 188
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.57 E-value=0.00091 Score=48.05 Aligned_cols=100 Identities=15% Similarity=0.234 Sum_probs=74.4
Q ss_pred cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcC--cHHHHHHCCCC----cC
Q 027830 29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE--HKSMCYSLNVH----VL 101 (218)
Q Consensus 29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~--~~~l~~~~~I~----~~ 101 (218)
+..|++..+|..++.. ...|+|.|..+--..-.. ...+.++++...+ -.++.|||.+ ...+|+++.|. --
T Consensus 3 ie~i~d~KdfKKLLRT--r~NVLvLy~ks~k~a~~~-Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~ 79 (112)
T cd03067 3 IEDISDHKDFKKLLRT--RNNVLVLYSKSAKSAEAL-LKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPK 79 (112)
T ss_pred cccccchHHHHHHHhh--cCcEEEEEecchhhHHHH-HHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCC
Confidence 3468888999999865 567777777665444444 4488888888776 7899999986 78899999998 55
Q ss_pred CE-EEEEeCCCeeEEEEecCccCHHHHHHHHHh
Q 027830 102 PF-FRFYRGAHGRVCSFSCTNATIKKFKDALAK 133 (218)
Q Consensus 102 Pt-i~l~~~g~~~~~~~~~g~~~~~~l~~~l~~ 133 (218)
|. +.-|++|. .-..|. ...+...|+.|++.
T Consensus 80 ~~~LkHYKdG~-fHkdYd-R~~t~kSmv~FlrD 110 (112)
T cd03067 80 PVELKHYKDGD-FHTEYN-RQLTFKSMVAFLRD 110 (112)
T ss_pred cchhhcccCCC-cccccc-chhhHHHHHHHhhC
Confidence 65 55688886 333444 57789999999864
No 189
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.57 E-value=0.00041 Score=46.72 Aligned_cols=54 Identities=13% Similarity=0.273 Sum_probs=39.9
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHH----HCCCC-cCCEEEEEeCCC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCY----SLNVH-VLPFFRFYRGAH 111 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~----~~~I~-~~Pti~l~~~g~ 111 (218)
++.|+.+||++|......|++. ++.+..+|++.+++..+ ..+.. ++|++ |.+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCE
Confidence 5679999999999999888763 57777888877654433 35666 89977 34664
No 190
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.55 E-value=0.00046 Score=46.54 Aligned_cols=54 Identities=15% Similarity=0.327 Sum_probs=41.3
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHH----HHHHCCCCcCCEEEEEeCCC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~----l~~~~~I~~~Pti~l~~~g~ 111 (218)
++.|+.+||+.|++....|++. ++.+..+|+++++. +.+..+-..+|++ |.+|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 5679999999999999888863 57788888887664 5555677889998 34654
No 191
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.52 E-value=0.0016 Score=47.98 Aligned_cols=89 Identities=12% Similarity=0.045 Sum_probs=67.2
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHH---CCC-cEEEEEeCcCcHHHHHHCCCCc--CCEEEEEeCCCeeEEEEec
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEM---NPD-VQFLQVNYEEHKSMCYSLNVHV--LPFFRFYRGAHGRVCSFSC 119 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~---~~~-v~~~~Vd~~~~~~l~~~~~I~~--~Pti~l~~~g~~~~~~~~~ 119 (218)
++.+..+.|+ .-..-..+...+.+++++ +.+ +.|+.+|.+......+.||+.. +|.+++...+.........
T Consensus 15 ~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~ 92 (111)
T cd03072 15 EGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFE 92 (111)
T ss_pred CCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCc
Confidence 4555555666 333347788999999999 987 9999999999888899999997 9999998654312222122
Q ss_pred CccCHHHHHHHHHhhCC
Q 027830 120 TNATIKKFKDALAKHTP 136 (218)
Q Consensus 120 g~~~~~~l~~~l~~~~~ 136 (218)
+..+.+.|.+|+++.+.
T Consensus 93 ~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 93 DVYVPGKLKQFVLDLHS 109 (111)
T ss_pred cccCHHHHHHHHHHHhc
Confidence 67889999999998874
No 192
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.47 E-value=0.0011 Score=52.00 Aligned_cols=37 Identities=32% Similarity=0.603 Sum_probs=31.8
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEE
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFL 82 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~ 82 (218)
..++.++.|+...|++|+.+.+.+.++.+++++ +.|.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 478899999999999999999999999888764 4443
No 193
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.47 E-value=0.00081 Score=49.15 Aligned_cols=92 Identities=12% Similarity=0.025 Sum_probs=62.1
Q ss_pred cEEecChhhHHHHHHhcCCCeEEEEEECCC--ChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830 29 ALELGRHKDLVESLWHAGDKLVVVDFFSPG--CGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~w--C~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~ 105 (218)
+..++ .+++.+.+.. +...+++|..+. |+.|....=++=||.+.+++ +..+.|+-.....+..+||+..+|+++
T Consensus 11 ~~~vd-~~~ld~~l~~--~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLv 87 (107)
T PF07449_consen 11 WPRVD-ADTLDAFLAA--PGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALV 87 (107)
T ss_dssp EEEE--CCCHHHHHHC--CSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEE
T ss_pred Ceeec-hhhHHHHHhC--CCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEE
Confidence 34444 4466677754 555555554433 44455555578889999988 777777877788999999999999999
Q ss_pred EEeCCCeeEEEEecCccCHH
Q 027830 106 FYRGAHGRVCSFSCTNATIK 125 (218)
Q Consensus 106 l~~~g~~~~~~~~~g~~~~~ 125 (218)
||++|+ ......|-++-.
T Consensus 88 f~R~g~--~lG~i~gi~dW~ 105 (107)
T PF07449_consen 88 FFRDGR--YLGAIEGIRDWA 105 (107)
T ss_dssp EEETTE--EEEEEESSSTHH
T ss_pred EEECCE--EEEEecCeeccc
Confidence 999986 455444555543
No 194
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.42 E-value=0.00057 Score=47.42 Aligned_cols=58 Identities=22% Similarity=0.423 Sum_probs=43.4
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeC--cC------------------------------cHHHHHHCC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNY--EE------------------------------HKSMCYSLN 97 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~--~~------------------------------~~~l~~~~~ 97 (218)
++.|+.++|++|..+.+.+.++....++ +.+....+ .. +..++..+|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4679999999999999999999765544 55554433 21 224567889
Q ss_pred CCcCCEEEEEe
Q 027830 98 VHVLPFFRFYR 108 (218)
Q Consensus 98 I~~~Pti~l~~ 108 (218)
+.++||+++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999998764
No 195
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.41 E-value=0.002 Score=47.40 Aligned_cols=75 Identities=9% Similarity=0.170 Sum_probs=58.7
Q ss_pred CChhHHhHHHHHHHHHHHCC-C-cEEEEEeCcCcHHHHHHCCCCc----CCEEEEEeCCCeeEEEEecCcc-CHHHHHHH
Q 027830 58 GCGGCKALHPKICQLAEMNP-D-VQFLQVNYEEHKSMCYSLNVHV----LPFFRFYRGAHGRVCSFSCTNA-TIKKFKDA 130 (218)
Q Consensus 58 wC~~C~~~~p~l~~la~~~~-~-v~~~~Vd~~~~~~l~~~~~I~~----~Pti~l~~~g~~~~~~~~~g~~-~~~~l~~~ 130 (218)
.-..-..+...+.++|+.++ + +.|+.+|.++.....+.||+.. +|.++++..+..+. ... +.. +.+.|.+|
T Consensus 29 ~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY-~~~-~~~~t~e~i~~F 106 (111)
T cd03073 29 NPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKY-VME-EEFSDVDALEEF 106 (111)
T ss_pred ChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCcc-CCC-cccCCHHHHHHH
Confidence 33455678899999999998 5 9999999998888899999984 99999986432122 122 566 89999999
Q ss_pred HHhh
Q 027830 131 LAKH 134 (218)
Q Consensus 131 l~~~ 134 (218)
+++.
T Consensus 107 ~~~f 110 (111)
T cd03073 107 LEDF 110 (111)
T ss_pred HHHh
Confidence 9875
No 196
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.40 E-value=0.0021 Score=59.53 Aligned_cols=123 Identities=11% Similarity=0.081 Sum_probs=83.3
Q ss_pred hhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEE
Q 027830 36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 115 (218)
Q Consensus 36 ~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~ 115 (218)
+++...+.+- .++|-+.++.+.|..|..+...++++++.-+.+.+...+.. ...|++.+..+|+..-+
T Consensus 8 ~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i 75 (517)
T PRK15317 8 TQLKQYLELL-ERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGEDTGV 75 (517)
T ss_pred HHHHHHHHhC-CCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCccceE
Confidence 4555555543 44555555555899999999999999998776766443211 34899999877653335
Q ss_pred EEecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHhC---CCceeeeCCCCCCCCC
Q 027830 116 SFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAAN---KDLSFNYTPKPHPMPA 174 (218)
Q Consensus 116 ~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~v~~y~p~~~~~p~ 174 (218)
.|. |-..-.+|..||...+... ++-..++++..+.+..- -++.+|+++.|..||.
T Consensus 76 ~f~-g~P~g~Ef~s~i~~i~~~~---~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~ 133 (517)
T PRK15317 76 RFA-GIPMGHEFTSLVLALLQVG---GHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPD 133 (517)
T ss_pred EEE-ecCccHHHHHHHHHHHHhc---CCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHH
Confidence 666 7777788888887776433 22345566655555442 2388999999999996
No 197
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.25 E-value=0.0023 Score=52.15 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=31.3
Q ss_pred CCeEEEEEECCCChhHHhHHHHH---HHHHHHCCC-cEEEEEe
Q 027830 47 DKLVVVDFFSPGCGGCKALHPKI---CQLAEMNPD-VQFLQVN 85 (218)
Q Consensus 47 ~k~vlV~Fya~wC~~C~~~~p~l---~~la~~~~~-v~~~~Vd 85 (218)
+++.||.|+.-.|++|..+.+.+ ..+.+.+++ +.++++.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 56779999999999999999876 788888874 6665543
No 198
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.23 E-value=0.0046 Score=57.23 Aligned_cols=124 Identities=13% Similarity=0.074 Sum_probs=83.1
Q ss_pred hhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEE
Q 027830 36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 115 (218)
Q Consensus 36 ~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~ 115 (218)
+++...+.+-.+ +|-+.++.+-|..|..+...++++++.-+.+.+...+.+. ...|++.++.+|+..-+
T Consensus 8 ~~l~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i 76 (515)
T TIGR03140 8 AQLKSYLASLEN-PVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGADTGI 76 (515)
T ss_pred HHHHHHHHhcCC-CEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCcccce
Confidence 455555554334 5544444447999999999999999987777775444221 35699999877653335
Q ss_pred EEecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHhC---CCceeeeCCCCCCCCC
Q 027830 116 SFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAAN---KDLSFNYTPKPHPMPA 174 (218)
Q Consensus 116 ~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~v~~y~p~~~~~p~ 174 (218)
.|. |-..-.+|..||...+... ++-..++++..+.+..- -.+.+|+++.|..||.
T Consensus 77 ~f~-g~P~g~Ef~s~i~~i~~~~---~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~ 134 (515)
T TIGR03140 77 RFA-GIPGGHEFTSLVLAILQVG---GHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPD 134 (515)
T ss_pred EEE-ecCCcHHHHHHHHHHHHhc---CCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHH
Confidence 565 6677778888887766433 22355666665555542 2388999999999996
No 199
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.22 E-value=0.0029 Score=52.44 Aligned_cols=61 Identities=23% Similarity=0.301 Sum_probs=45.5
Q ss_pred cccccCcEEecChh--hHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEe
Q 027830 23 PLVHRLALELGRHK--DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVN 85 (218)
Q Consensus 23 ~l~~~~v~~i~s~~--~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd 85 (218)
...+..++.++... .+.+.. .+++|.+++|.+-.|++-..-...+++++++|.+ +.|+.|-
T Consensus 78 ~APns~vv~l~g~~~~~ildf~--~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VY 141 (237)
T PF00837_consen 78 PAPNSPVVTLDGQRSCRILDFA--KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVY 141 (237)
T ss_pred CCCCCceEeeCCCcceeHHHhc--cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhh
Confidence 34455666665543 233443 4699999999999999999999999999999987 5565543
No 200
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0025 Score=54.54 Aligned_cols=109 Identities=15% Similarity=0.216 Sum_probs=80.2
Q ss_pred cCcEEecChhhHHHHHHh-cCCCeEEEEEECC----CChhHHhHHHHHHHHHHHCC---------CcEEEEEeCcCcHHH
Q 027830 27 RLALELGRHKDLVESLWH-AGDKLVVVDFFSP----GCGGCKALHPKICQLAEMNP---------DVQFLQVNYEEHKSM 92 (218)
Q Consensus 27 ~~v~~i~s~~~~~~~l~~-~~~k~vlV~Fya~----wC~~C~~~~p~l~~la~~~~---------~v~~~~Vd~~~~~~l 92 (218)
..++.+++. .|...+.. ..+-.++|+|.|. .|.-|+.....+.-+++.+. .+=|..||.++.+++
T Consensus 40 ~~VI~~n~d-~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~ 118 (331)
T KOG2603|consen 40 SGVIRMNDD-KFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV 118 (331)
T ss_pred CCeEEecCc-chhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence 456666664 56666652 2355678888875 59999999999998888641 167899999999999
Q ss_pred HHHCCCCcCCEEEEEeCCCee------EEEEecCccCHHHHHHHHHhhCCC
Q 027830 93 CYSLNVHVLPFFRFYRGAHGR------VCSFSCTNATIKKFKDALAKHTPD 137 (218)
Q Consensus 93 ~~~~~I~~~Pti~l~~~g~~~------~~~~~~g~~~~~~l~~~l~~~~~~ 137 (218)
-+.++++.+|++++|...++. ......| ..++++.+|+++....
T Consensus 119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g-~~Ae~iaqfv~~~tkv 168 (331)
T KOG2603|consen 119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLG-FEAEQIAQFVADRTKV 168 (331)
T ss_pred HHHhcccCCCeEEEeCCCccccccCccchhhhcc-hhHHHHHHHHHHhhhh
Confidence 999999999999999544322 2223323 3499999999988743
No 201
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0017 Score=44.88 Aligned_cols=66 Identities=15% Similarity=0.289 Sum_probs=43.5
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH-----HHHHHC-CCCcCCEEEEEeCCCeeEEEEecCccCH
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----SMCYSL-NVHVLPFFRFYRGAHGRVCSFSCTNATI 124 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~-----~l~~~~-~I~~~Pti~l~~~g~~~~~~~~~g~~~~ 124 (218)
++.|.-+||++|++....|.+. ++.|..+|++.+. +..++. |...+|.|+ .+|+ . ..|..+.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~--i~~~--~---igg~~d~ 70 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIF--IGGK--H---VGGCDDL 70 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEE--ECCE--E---EeCcccH
Confidence 5678999999999999888733 4666666665544 344444 789999985 3553 1 1244555
Q ss_pred HHHH
Q 027830 125 KKFK 128 (218)
Q Consensus 125 ~~l~ 128 (218)
+.+.
T Consensus 71 ~~~~ 74 (80)
T COG0695 71 DALE 74 (80)
T ss_pred HHHH
Confidence 5554
No 202
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.08 E-value=0.0047 Score=44.28 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=35.2
Q ss_pred CCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHH----HHCCCCcCCEEEEEeCCC
Q 027830 57 PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC----YSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 57 ~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~----~~~~I~~~Pti~l~~~g~ 111 (218)
+||++|++....|.+. ++.+..+|+++++++. +..|...+|.+ |.+|+
T Consensus 25 ~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v--fi~g~ 76 (97)
T TIGR00365 25 PQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL--YVKGE 76 (97)
T ss_pred CCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence 8999999999988775 4667788887665443 44566788887 34664
No 203
>PRK10638 glutaredoxin 3; Provisional
Probab=97.07 E-value=0.0023 Score=44.29 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=39.5
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHH----HHHHCCCCcCCEEEEEeCCC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~----l~~~~~I~~~Pti~l~~~g~ 111 (218)
++.|..+||++|++....|++. ++.+..+|++.+.+ +.+..+...+|++ |.+|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~ 61 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQ 61 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 5678899999999999888764 46677778876653 3445577889987 33654
No 204
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.93 E-value=0.018 Score=41.62 Aligned_cols=95 Identities=17% Similarity=0.205 Sum_probs=65.5
Q ss_pred cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC-CcEEEEEeCcCcHHHHHHCCCCcCCEEEEE
Q 027830 29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107 (218)
Q Consensus 29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~-~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~ 107 (218)
+.+|++.+++.+.+. .++.++|-|+..--. .....+.++++.+. +..|+... +..+...+++ .|++++|
T Consensus 2 ~~~i~s~~~l~~f~~--~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~ 71 (104)
T cd03069 2 SVELRTEAEFEKFLS--DDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLF 71 (104)
T ss_pred ccccCCHHHHHHHhc--cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEE
Confidence 456788888888774 366777777766443 35667888888884 58886654 3566788888 7888888
Q ss_pred eC------CCeeEEEEecCccCHHHHHHHHHhh
Q 027830 108 RG------AHGRVCSFSCTNATIKKFKDALAKH 134 (218)
Q Consensus 108 ~~------g~~~~~~~~~g~~~~~~l~~~l~~~ 134 (218)
+. -......|. |..+.+.|.+||...
T Consensus 72 ~p~~~~~k~de~~~~y~-g~~~~~~l~~fi~~~ 103 (104)
T cd03069 72 RPPRLSNKFEDSSVKFD-GDLDSSKIKKFIREN 103 (104)
T ss_pred echhhhcccCccccccc-CcCCHHHHHHHHHhh
Confidence 33 111223455 777899999999764
No 205
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.89 E-value=0.03 Score=40.21 Aligned_cols=98 Identities=12% Similarity=0.159 Sum_probs=67.2
Q ss_pred cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHC-CCcEEEEEeCcCcHHHHHHCCCCcCCEEEEE
Q 027830 29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107 (218)
Q Consensus 29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~-~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~ 107 (218)
+..|++.+++...+.. .+..++|-|+..--. .....|.++++.+ .+..|+... +..+...+++. .|++++|
T Consensus 2 v~~i~~~~~~e~~~~~-~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~ 73 (102)
T cd03066 2 VEIINSERELQAFENI-EDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFY 73 (102)
T ss_pred ceEcCCHHHHHHHhcc-cCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEe
Confidence 5678888889888841 355666666665433 3456788888888 458886544 45667778765 7999999
Q ss_pred eCCCeeEEEEecCccCHHHHHHHHHhh
Q 027830 108 RGAHGRVCSFSCTNATIKKFKDALAKH 134 (218)
Q Consensus 108 ~~g~~~~~~~~~g~~~~~~l~~~l~~~ 134 (218)
++.......|..|..+.+.|.+||...
T Consensus 74 ~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 74 EPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 762223345633678999999999754
No 206
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.80 E-value=0.0048 Score=43.47 Aligned_cols=48 Identities=23% Similarity=0.325 Sum_probs=35.5
Q ss_pred CCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHH----HHHCCCCcCCEEEEEeCCC
Q 027830 57 PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 57 ~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l----~~~~~I~~~Pti~l~~~g~ 111 (218)
+||++|++....|.+. ++.|..+|++.+.++ .+..|...+|.+ |.+|+
T Consensus 21 ~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~ 72 (90)
T cd03028 21 PRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGE 72 (90)
T ss_pred CCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence 7999999999888776 366777777666544 344577889997 44664
No 207
>PRK10824 glutaredoxin-4; Provisional
Probab=96.64 E-value=0.01 Score=44.01 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=31.4
Q ss_pred CCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHH----CCCCcCCEEEEEeCCC
Q 027830 57 PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS----LNVHVLPFFRFYRGAH 111 (218)
Q Consensus 57 ~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~----~~I~~~Pti~l~~~g~ 111 (218)
|||++|++....|.++. +.+..+|++.+.++... -|...+|.+ |.+|+
T Consensus 28 p~Cpyc~~ak~lL~~~~-----i~~~~idi~~d~~~~~~l~~~sg~~TVPQI--FI~G~ 79 (115)
T PRK10824 28 PSCGFSAQAVQALSACG-----ERFAYVDILQNPDIRAELPKYANWPTFPQL--WVDGE 79 (115)
T ss_pred CCCchHHHHHHHHHHcC-----CCceEEEecCCHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 69999999999988763 44555676666554443 244455554 55775
No 208
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.30 E-value=0.0018 Score=55.39 Aligned_cols=121 Identities=16% Similarity=0.225 Sum_probs=85.7
Q ss_pred HHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEe-CcCcHHHHHHCCCCcCCEEEEEeCCCeeEEE
Q 027830 38 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN-YEEHKSMCYSLNVHVLPFFRFYRGAHGRVCS 116 (218)
Q Consensus 38 ~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd-~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~ 116 (218)
..+.+..+...++-+.||++||+..+..+|.+.-....|+.+....++ ...-+.+..+|++.+.|++.+...-- ...
T Consensus 67 l~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~--~~~ 144 (319)
T KOG2640|consen 67 LLDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTC--PAS 144 (319)
T ss_pred HHHhhccccCCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeecccc--chh
Confidence 334443444668899999999999999999999888888755444443 23456778899999999999885543 344
Q ss_pred EecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHhCCCceeeeCCCCCC
Q 027830 117 FSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTPKPHP 171 (218)
Q Consensus 117 ~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~v~~y~p~~~~ 171 (218)
+. |.++...|++|..+.++-...+ +..+... .-..++|.||.+.
T Consensus 145 ~~-~~r~l~sLv~fy~~i~~~~v~i------e~~d~~~----~~~~~ry~~~~~~ 188 (319)
T KOG2640|consen 145 YR-GERDLASLVNFYTEITPMSVLI------EILDCTS----CLEPVRYVPEGGP 188 (319)
T ss_pred hc-ccccHHHHHHHHHhhccchhcc------cccCccc----ceeeeEeccccCc
Confidence 55 8999999999999998733111 1111111 2467899998875
No 209
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.24 E-value=0.025 Score=44.95 Aligned_cols=29 Identities=28% Similarity=0.606 Sum_probs=23.1
Q ss_pred EEECCCChhHHhHHHHHHHHHHHCCC-cEE
Q 027830 53 DFFSPGCGGCKALHPKICQLAEMNPD-VQF 81 (218)
Q Consensus 53 ~Fya~wC~~C~~~~p~l~~la~~~~~-v~~ 81 (218)
+|.-|+|+.|-.+.|.|.++..+|++ +.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~ 31 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEF 31 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEE
Confidence 69999999999999999999999986 433
No 210
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.18 E-value=0.014 Score=52.55 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=40.3
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHH---HH---------CCCCcCCEEEEEeCCC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC---YS---------LNVHVLPFFRFYRGAH 111 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~---~~---------~~I~~~Pti~l~~~g~ 111 (218)
++.|..+||++|++....|.+. ++.+..||+++++... ++ .|.+++|++.+ +|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~ 69 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV 69 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence 6779999999999999888764 5788888888766322 22 36788999854 553
No 211
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=96.09 E-value=0.22 Score=35.52 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=56.8
Q ss_pred hhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEE
Q 027830 36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 115 (218)
Q Consensus 36 ~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~ 115 (218)
+++...+.+-.+...++.|..+. ..|..+...++++++.-+.+.+...+... ..|++.+..+|+..-+
T Consensus 8 ~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gI 75 (94)
T cd02974 8 QQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDTGI 75 (94)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcccE
Confidence 44555555444555566666655 99999999999999987666665433221 4799999877642225
Q ss_pred EEecCccCHHHHHHHHHh
Q 027830 116 SFSCTNATIKKFKDALAK 133 (218)
Q Consensus 116 ~~~~g~~~~~~l~~~l~~ 133 (218)
.|. |-..-.++..||..
T Consensus 76 rF~-GiP~GhEf~Slila 92 (94)
T cd02974 76 RFA-GIPMGHEFTSLVLA 92 (94)
T ss_pred EEE-ecCCchhHHHHHHH
Confidence 565 66666777777754
No 212
>PTZ00062 glutaredoxin; Provisional
Probab=96.05 E-value=0.035 Score=45.33 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=34.2
Q ss_pred CCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHH----CCCCcCCEEEEEeCCC
Q 027830 56 SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS----LNVHVLPFFRFYRGAH 111 (218)
Q Consensus 56 a~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~----~~I~~~Pti~l~~~g~ 111 (218)
.|||++|+++...|.+. ++.+..+|++++.++.+. .|...+|.+. .+|+
T Consensus 125 ~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf--I~G~ 177 (204)
T PTZ00062 125 FPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLY--VNGE 177 (204)
T ss_pred CCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE--ECCE
Confidence 37999999999888754 477788888877655433 3455666654 4664
No 213
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.069 Score=38.86 Aligned_cols=56 Identities=16% Similarity=0.312 Sum_probs=36.6
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH-HHH----HHCCCCcCCEEEEEeCCC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-SMC----YSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~-~l~----~~~~I~~~Pti~l~~~g~ 111 (218)
+|.|..+||++|+++...|.++ -.+..++.+|-+.+. ++- +.-+.+.+|.+ |.+|+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~v--FI~Gk 76 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSDL---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNV--FIGGK 76 (104)
T ss_pred EEEEECCcCchHHHHHHHHHhC---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEE--EECCE
Confidence 5569999999999988888772 123677777765443 222 22345678876 45665
No 214
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.19 Score=39.29 Aligned_cols=89 Identities=17% Similarity=0.098 Sum_probs=58.5
Q ss_pred cCCCeEEEEEE-CCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCc---------------------CcHHHHHHCCCCc
Q 027830 45 AGDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE---------------------EHKSMCYSLNVHV 100 (218)
Q Consensus 45 ~~~k~vlV~Fy-a~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~---------------------~~~~l~~~~~I~~ 100 (218)
..++.||++|| ..|++.|-...-.|++...++. ++.++-|..| .+..+++.||+..
T Consensus 28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~ 107 (157)
T COG1225 28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG 107 (157)
T ss_pred hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence 35779999999 7899999888888887777665 4777777654 3567888888743
Q ss_pred ------------CCEEEEEeCCCeeEEEEec---CccCHHHHHHHHHhh
Q 027830 101 ------------LPFFRFYRGAHGRVCSFSC---TNATIKKFKDALAKH 134 (218)
Q Consensus 101 ------------~Pti~l~~~g~~~~~~~~~---g~~~~~~l~~~l~~~ 134 (218)
.++..++..+ |++..... -.-..+++.+.|++.
T Consensus 108 ~k~~~gk~~~~~~R~TfvId~d-G~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 108 EKKMYGKEYMGIERSTFVIDPD-GKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred ccccCccccccccceEEEECCC-CeEEEEecCCCCcccHHHHHHHHHHh
Confidence 3555555432 33333221 233466777777654
No 215
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.042 Score=51.85 Aligned_cols=73 Identities=14% Similarity=0.183 Sum_probs=52.6
Q ss_pred hhHHHHHHhcCCCeEEEEEECCCChhHHhHHHH-H--HHHHHHCC-CcEEEEEeCcCcHHHHHHCC--------CCcCCE
Q 027830 36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPK-I--CQLAEMNP-DVQFLQVNYEEHKSMCYSLN--------VHVLPF 103 (218)
Q Consensus 36 ~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~-l--~~la~~~~-~v~~~~Vd~~~~~~l~~~~~--------I~~~Pt 103 (218)
+.|...- ..+||++|....+||..|+.|... | .++++... +..-++||-++.|++-+.|. --++|-
T Consensus 34 eAf~~A~--~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPL 111 (667)
T COG1331 34 EAFAKAK--EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPL 111 (667)
T ss_pred HHHHHHH--HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCce
Confidence 4455544 359999999999999999998742 2 24444332 37888999998887766654 558999
Q ss_pred EEEEeCC
Q 027830 104 FRFYRGA 110 (218)
Q Consensus 104 i~l~~~g 110 (218)
.+|...+
T Consensus 112 tVfLTPd 118 (667)
T COG1331 112 TVFLTPD 118 (667)
T ss_pred eEEECCC
Confidence 8888544
No 216
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.36 E-value=0.63 Score=33.78 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=62.1
Q ss_pred cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC-CcEEEEEeCcCcHHHHHHCCCCcCCEEEEE
Q 027830 29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107 (218)
Q Consensus 29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~-~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~ 107 (218)
+..|++.+++...+.. .++.++|-|+..--. .....+.++|+.+. ++.|+... +..+..++++. .|.+++|
T Consensus 2 v~~i~s~~ele~f~~~-~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~ 73 (107)
T cd03068 2 SKQLQTLKQVQEFLRD-GDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVF 73 (107)
T ss_pred ceEcCCHHHHHHHHhc-CCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEE
Confidence 5678888889887754 325666666665433 35567888898884 58886644 34667788875 5777777
Q ss_pred eCCC------eeEEEEecCc-cCHHH-HHHHHHhh
Q 027830 108 RGAH------GRVCSFSCTN-ATIKK-FKDALAKH 134 (218)
Q Consensus 108 ~~g~------~~~~~~~~g~-~~~~~-l~~~l~~~ 134 (218)
+... .....|. |. .+.++ |.+||+++
T Consensus 74 rp~~~~~k~e~~~~~~~-~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 74 QPEKFQSKYEPKSHVLN-KKDSTSEDELKDFFKEH 107 (107)
T ss_pred CcHHHhhhcCcceeeee-ccccchHHHHHHHHhcC
Confidence 4322 1123343 44 45545 99999764
No 217
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=95.02 E-value=0.37 Score=37.95 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=27.3
Q ss_pred EEEEEECCCChhHHhHHHHHHHHHHHCCCcEE
Q 027830 50 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQF 81 (218)
Q Consensus 50 vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~ 81 (218)
.|..||..-|++|....+.+.++.+.++++.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i 32 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEI 32 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcE
Confidence 36789999999999999999999998866444
No 218
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.89 E-value=0.052 Score=42.17 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=35.3
Q ss_pred CeEEEEEECCCChhHHhH-HHHHHHHHHHCC--Cc-EEEEEeCcC---cHHHHHHCCC
Q 027830 48 KLVVVDFFSPGCGGCKAL-HPKICQLAEMNP--DV-QFLQVNYEE---HKSMCYSLNV 98 (218)
Q Consensus 48 k~vlV~Fya~wC~~C~~~-~p~l~~la~~~~--~v-~~~~Vd~~~---~~~l~~~~~I 98 (218)
..+|+.|.+.||+.|... .+.|.+..+++. ++ .++.|..+. +...++++++
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 444555558999999988 888888888764 46 588887764 3334455555
No 219
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=94.72 E-value=0.19 Score=33.62 Aligned_cols=76 Identities=13% Similarity=0.126 Sum_probs=43.8
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHH
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDA 130 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~ 130 (218)
+..|+.++|+.|++.+-.+.+..-. +.+..+|.....++ +.-+...+|++..=.+|.+.+. .....|.++
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~---y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l------~eS~~I~~y 71 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP---YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQL------VDSSVIIST 71 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc---eEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEE------EcHHHHHHH
Confidence 4568889999999998766555322 23333443222333 3345568999874322222222 334667788
Q ss_pred HHhhCC
Q 027830 131 LAKHTP 136 (218)
Q Consensus 131 l~~~~~ 136 (218)
|.++++
T Consensus 72 L~~~~~ 77 (77)
T cd03040 72 LKTYLG 77 (77)
T ss_pred HHHHcC
Confidence 877653
No 220
>PHA03075 glutaredoxin-like protein; Provisional
Probab=93.44 E-value=0.14 Score=37.71 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=30.1
Q ss_pred CeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeC
Q 027830 48 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY 86 (218)
Q Consensus 48 k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~ 86 (218)
|.+++.|.-|.|+-|+.....+.++.++| .+.+||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY---~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY---DILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc---cEEEEEe
Confidence 56899999999999999999998888886 4555554
No 221
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=93.42 E-value=0.39 Score=32.53 Aligned_cols=57 Identities=5% Similarity=-0.005 Sum_probs=46.7
Q ss_pred EEEEEECCCChhHHhHHHHHHHHHHHCC-C-cEEEEEeCcCcHHHHHHCCCCcCCEEEE
Q 027830 50 VVVDFFSPGCGGCKALHPKICQLAEMNP-D-VQFLQVNYEEHKSMCYSLNVHVLPFFRF 106 (218)
Q Consensus 50 vlV~Fya~wC~~C~~~~p~l~~la~~~~-~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l 106 (218)
.+..|-+..-+..++....+.++.+.+- + +.+--||+.++++++..++|-.+||++=
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 4555666666888888888888887763 3 8888999999999999999999999763
No 222
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=93.03 E-value=0.38 Score=31.72 Aligned_cols=51 Identities=10% Similarity=0.069 Sum_probs=35.4
Q ss_pred EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC-cHHHHHHCCCCcCCEEE
Q 027830 52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~-~~~l~~~~~I~~~Pti~ 105 (218)
+.|+.+||+.|++.+-.+.+..-. +.+..+|... .+++.+......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~---~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT---VELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC---cEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 357899999999988777655332 5666666543 34566666677899995
No 223
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=92.99 E-value=0.46 Score=36.73 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=37.1
Q ss_pred EEEEECC------CChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHH----HHHHCCC----CcCCEEEEEeCCC
Q 027830 51 VVDFFSP------GCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNV----HVLPFFRFYRGAH 111 (218)
Q Consensus 51 lV~Fya~------wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~----l~~~~~I----~~~Pti~l~~~g~ 111 (218)
++.|+++ ||++|++++..|+.+ +|.|-.+|++.+.+ |.+.++- ..+|.+. .+|+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF--I~G~ 69 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF--VDGR 69 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE--ECCE
Confidence 4556677 999999999888765 47888889877654 3344444 5677654 4554
No 224
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=92.70 E-value=1.3 Score=29.58 Aligned_cols=72 Identities=13% Similarity=0.095 Sum_probs=50.0
Q ss_pred EEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC-cHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHH
Q 027830 53 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL 131 (218)
Q Consensus 53 ~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~-~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l 131 (218)
.|+.++|+.|++..=.++...- .+.+..++..+ ...+.....-..+|++. .+|. + -.+...|.++|
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~--~------l~dS~~I~~yL 67 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGE--V------LTDSAAIIEYL 67 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTE--E------EESHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE--ECCE--E------EeCHHHHHHHH
Confidence 3788999999998866654432 25666666654 35666777778999997 4553 2 23557788999
Q ss_pred HhhCCC
Q 027830 132 AKHTPD 137 (218)
Q Consensus 132 ~~~~~~ 137 (218)
+++.+.
T Consensus 68 ~~~~~~ 73 (75)
T PF13417_consen 68 EERYPG 73 (75)
T ss_dssp HHHSTS
T ss_pred HHHcCC
Confidence 888754
No 225
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=92.59 E-value=1.2 Score=29.86 Aligned_cols=71 Identities=10% Similarity=0.069 Sum_probs=41.0
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc----HHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHH
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH----KSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKK 126 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~----~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~ 126 (218)
+..|+.++|+.|++.+-.+.+. ++.+-.++++.. +++.+.-+-..+|+++.- +| +.. -.....
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~-~~-~~~------l~es~~ 68 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDP-NT-GVQ------MFESAD 68 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeC-CC-CeE------EEcHHH
Confidence 3457788999999988777655 344444454432 234344455689998532 22 212 233466
Q ss_pred HHHHHHhh
Q 027830 127 FKDALAKH 134 (218)
Q Consensus 127 l~~~l~~~ 134 (218)
|.++|.+.
T Consensus 69 I~~yL~~~ 76 (77)
T cd03041 69 IVKYLFKT 76 (77)
T ss_pred HHHHHHHh
Confidence 77777654
No 226
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=92.58 E-value=0.45 Score=31.28 Aligned_cols=50 Identities=8% Similarity=0.104 Sum_probs=30.1
Q ss_pred EEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830 53 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 53 ~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~ 105 (218)
.|+.++|++|++.+-.+....-. +..+.++........+..+-..+|++.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~---~~~~~~~~~~~~~~~~~~~~~~vP~L~ 52 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP---VEQIILQNDDEATPIRMIGAKQVPILE 52 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC---eEEEECCCCchHHHHHhcCCCccCEEE
Confidence 57789999999988777554222 334444443333333344456789874
No 227
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=92.14 E-value=0.14 Score=37.55 Aligned_cols=52 Identities=17% Similarity=0.340 Sum_probs=32.9
Q ss_pred EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH----HHHHHCCCCcCCEEEEEe
Q 027830 52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK----SMCYSLNVHVLPFFRFYR 108 (218)
Q Consensus 52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~----~l~~~~~I~~~Pti~l~~ 108 (218)
..|+.++|+.|++....|++- ++.|-.+|+.+++ ++..-++..+.|..-+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~ 57 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFN 57 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHh
Confidence 468999999999998777653 5677777775433 233333333445544443
No 228
>PRK09301 circadian clock protein KaiB; Provisional
Probab=91.25 E-value=0.76 Score=33.26 Aligned_cols=62 Identities=3% Similarity=0.019 Sum_probs=52.1
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHC-CC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEE
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~-~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~ 107 (218)
....++=.|.|..-+..++....+.++.+.+ ++ +.+--||+.++++++..++|-.+||++=.
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~ 67 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKI 67 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhc
Confidence 3467788888999999999888898887754 44 88888999999999999999999997633
No 229
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=91.08 E-value=0.86 Score=32.00 Aligned_cols=60 Identities=5% Similarity=0.028 Sum_probs=50.0
Q ss_pred CeEEEEEECCCChhHHhHHHHHHHHHHHC-CC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEE
Q 027830 48 KLVVVDFFSPGCGGCKALHPKICQLAEMN-PD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107 (218)
Q Consensus 48 k~vlV~Fya~wC~~C~~~~p~l~~la~~~-~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~ 107 (218)
..++=.|.|..-+.+++....+.++.+.+ .+ +.+--||+.++++++..++|-.+||++=.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~ 64 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKI 64 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhc
Confidence 45667788888899988888888887754 44 88888999999999999999999997643
No 230
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=91.00 E-value=0.28 Score=35.25 Aligned_cols=32 Identities=9% Similarity=0.289 Sum_probs=24.5
Q ss_pred EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC
Q 027830 52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 88 (218)
Q Consensus 52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~ 88 (218)
..|+.++|+.|+.....|++. ++.|-.+|+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~ 33 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLK 33 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeecc
Confidence 568999999999998777663 46666666654
No 231
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=90.11 E-value=0.66 Score=34.10 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=26.5
Q ss_pred EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH
Q 027830 52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 90 (218)
Q Consensus 52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~ 90 (218)
..|+.++|+.|++....|++- ++.|-.+|+.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-----GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCceEEEecCCCh
Confidence 468999999999998877762 5777788876544
No 232
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=89.69 E-value=1.1 Score=29.10 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=34.6
Q ss_pred EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCc----CcHHHHHHCCCCcCCEEEE
Q 027830 52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE----EHKSMCYSLNVHVLPFFRF 106 (218)
Q Consensus 52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~----~~~~l~~~~~I~~~Pti~l 106 (218)
..|+.++|+.|++.+-.+.+..-. +....+|.. ..+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID---VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC---ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 357889999999998887665332 344555542 2345555566678999964
No 233
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.67 E-value=2.4 Score=37.73 Aligned_cols=92 Identities=13% Similarity=0.279 Sum_probs=72.1
Q ss_pred hhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEE
Q 027830 36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 115 (218)
Q Consensus 36 ~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~ 115 (218)
+++.+.+..-.+..-+=-|++=.|..|-.....+.-++-..|++.-..||-.-..+-...-+|.++||++ .+|+
T Consensus 105 q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvf--lnGe---- 178 (520)
T COG3634 105 QDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVF--LNGE---- 178 (520)
T ss_pred HHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEE--Ecch----
Confidence 3455555555677788889999999999999999888888899999999987666666778999999975 4664
Q ss_pred EEecCccCHHHHHHHHHh
Q 027830 116 SFSCTNATIKKFKDALAK 133 (218)
Q Consensus 116 ~~~~g~~~~~~l~~~l~~ 133 (218)
.|..|.++.++|...|..
T Consensus 179 ~fg~GRmtleeilaki~~ 196 (520)
T COG3634 179 EFGQGRMTLEEILAKIDT 196 (520)
T ss_pred hhcccceeHHHHHHHhcC
Confidence 344477888888877755
No 234
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=89.26 E-value=4.5 Score=29.67 Aligned_cols=23 Identities=13% Similarity=0.285 Sum_probs=20.3
Q ss_pred cCcHHHHHHCCCCcCCEEEEEeC
Q 027830 87 EEHKSMCYSLNVHVLPFFRFYRG 109 (218)
Q Consensus 87 ~~~~~l~~~~~I~~~Pti~l~~~ 109 (218)
.-++.+.++|+|+.+|++++-++
T Consensus 58 ~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 58 QIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred eEChhHHhhCCceEcCEEEEEcC
Confidence 33688999999999999999977
No 235
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=89.26 E-value=1.1 Score=37.63 Aligned_cols=69 Identities=12% Similarity=0.024 Sum_probs=44.4
Q ss_pred CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCC-CCcCCEEEE
Q 027830 28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLN-VHVLPFFRF 106 (218)
Q Consensus 28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~-I~~~Pti~l 106 (218)
+...+.+. +.. ..+|+.+++..+.||+.|...+=.|--.-.+|.++.+....-+- .+ -..+||+.|
T Consensus 45 ~~~kvsn~----d~~--~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~-------~d~~pn~Ptl~F 111 (249)
T PF06053_consen 45 NFFKVSNQ----DLA--PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDP-------YDNYPNTPTLIF 111 (249)
T ss_pred ceeeecCc----ccC--CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCc-------ccCCCCCCeEEE
Confidence 55566553 222 46999999999999999988775555555567766333222221 22 247999988
Q ss_pred EeC
Q 027830 107 YRG 109 (218)
Q Consensus 107 ~~~ 109 (218)
...
T Consensus 112 ~~~ 114 (249)
T PF06053_consen 112 NNY 114 (249)
T ss_pred ecC
Confidence 754
No 236
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.03 E-value=1.3 Score=36.65 Aligned_cols=43 Identities=16% Similarity=0.320 Sum_probs=34.0
Q ss_pred HHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCCCCC
Q 027830 91 SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRC 139 (218)
Q Consensus 91 ~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 139 (218)
..++++||+++|||+| +|+ .... |..+.+-|.+.|++.++...
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~---~~V~-Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGK---YAVS-GAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHCCCccCceEEE--cCc---Eeec-CCCCHHHHHHHHHHHHhccc
Confidence 4578899999999998 554 2334 88999999999999986543
No 237
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=88.85 E-value=0.2 Score=35.34 Aligned_cols=32 Identities=9% Similarity=-0.019 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHhCCCceeeeCCCCCCCCCC
Q 027830 144 TKGLEEKELLALAANKDLSFNYTPKPHPMPAP 175 (218)
Q Consensus 144 ~~~l~~~~l~~~~~~~~~v~~y~p~~~~~p~~ 175 (218)
+..++.++|+..+.+..++.||++||.+|...
T Consensus 3 v~~l~~~~f~~~~~~~~lv~f~a~wC~~C~~~ 34 (101)
T cd02994 3 VVELTDSNWTLVLEGEWMIEFYAPWCPACQQL 34 (101)
T ss_pred eEEcChhhHHHHhCCCEEEEEECCCCHHHHHH
Confidence 45678888999888888999999999998653
No 238
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=88.61 E-value=2 Score=36.19 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=58.7
Q ss_pred CCCeEEEEEECCCChh-HHhHHHHHH----HHHHHCCC---cEEEEEeCcC--------------------------cHH
Q 027830 46 GDKLVVVDFFSPGCGG-CKALHPKIC----QLAEMNPD---VQFLQVNYEE--------------------------HKS 91 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~-C~~~~p~l~----~la~~~~~---v~~~~Vd~~~--------------------------~~~ 91 (218)
.+|.++++|.=+.|+. |=.....+. ++.+...- =.|+.||=+. -.+
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 5899999999999975 644443333 33333221 2577777521 346
Q ss_pred HHHHCCCCcCC-------------EEEEE-eCCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830 92 MCYSLNVHVLP-------------FFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHTP 136 (218)
Q Consensus 92 l~~~~~I~~~P-------------ti~l~-~~g~~~~~~~~~g~~~~~~l~~~l~~~~~ 136 (218)
+|++|.|..-. ++++| -+-+++.+.+...+++.+++.+-|.++..
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 78888875433 34444 34335677777679999999999988763
No 239
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=88.52 E-value=0.53 Score=29.75 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=33.0
Q ss_pred EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH--HHHHHCCCCcCCEEE
Q 027830 52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK--SMCYSLNVHVLPFFR 105 (218)
Q Consensus 52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~--~l~~~~~I~~~Pti~ 105 (218)
..|+.++|+.|++..-.+....-. +....++..... .+.+..+-..+|++.
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~ 54 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLE 54 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEE
Confidence 357889999999888777665322 344555543322 244556677899875
No 240
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=88.21 E-value=0.96 Score=34.12 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=25.6
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 90 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~ 90 (218)
+..|+.+||+.|++....|++- ++.|-.+|+.+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCCh
Confidence 4578899999999988776544 5667777765443
No 241
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=87.68 E-value=0.78 Score=33.23 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=24.4
Q ss_pred EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc
Q 027830 52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 89 (218)
Q Consensus 52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~ 89 (218)
..|+.+||+.|+.....|++- ++.|-.+|+.++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccC
Confidence 568999999999988777554 466666666543
No 242
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=87.24 E-value=0.43 Score=33.69 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHhCCC--ceeeeCCCCCCCCCC
Q 027830 144 TKGLEEKELLALAANKD--LSFNYTPKPHPMPAP 175 (218)
Q Consensus 144 ~~~l~~~~l~~~~~~~~--~v~~y~p~~~~~p~~ 175 (218)
+..++.++|+..+.+.. +++||+||+.+|..+
T Consensus 3 ~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~ 36 (101)
T cd03003 3 IVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDL 36 (101)
T ss_pred eEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHh
Confidence 34567788888886655 888999999998654
No 243
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=86.05 E-value=0.57 Score=33.12 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHhCCC---ceeeeCCCCCCCCC
Q 027830 144 TKGLEEKELLALAANKD---LSFNYTPKPHPMPA 174 (218)
Q Consensus 144 ~~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~ 174 (218)
+..++.++|+..+.++. ++.||++||.+|..
T Consensus 3 v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~ 36 (104)
T cd03004 3 VITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQA 36 (104)
T ss_pred ceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHH
Confidence 45677888998876553 88899999999864
No 244
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=85.94 E-value=2.5 Score=27.63 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=34.7
Q ss_pred EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC----cHHHHHHCCCCcCCEEE
Q 027830 52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE----HKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~----~~~l~~~~~I~~~Pti~ 105 (218)
..|+.++|+.|++.+-.+.+..-. +....+|..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 468899999999888777665332 4555666432 35555655667899995
No 245
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.91 E-value=2.1 Score=30.86 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=38.2
Q ss_pred CCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCC-CcCCEE-EEEeCCC
Q 027830 56 SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNV-HVLPFF-RFYRGAH 111 (218)
Q Consensus 56 a~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I-~~~Pti-~l~~~g~ 111 (218)
.|-|+.+.+....|..... +.|..+|+-.++++.+.+.- ..+||| -+|.+|.
T Consensus 27 ~P~CGFS~~~vqiL~~~g~----v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GE 80 (105)
T COG0278 27 FPQCGFSAQAVQILSACGV----VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGE 80 (105)
T ss_pred CCCCCccHHHHHHHHHcCC----cceeEEeeccCHHHHhccHhhcCCCCCceeeECCE
Confidence 5668777777666654422 78999999888988876653 478998 6788875
No 246
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=85.80 E-value=8.4 Score=34.86 Aligned_cols=90 Identities=11% Similarity=0.018 Sum_probs=63.2
Q ss_pred cCCCeEEEEEECCCChhHHhHH--HHHHHHHHH-CC-CcEEEEEeCc--CcHHHHHHCCCCcCCEEEEEeCCCeeEEEEe
Q 027830 45 AGDKLVVVDFFSPGCGGCKALH--PKICQLAEM-NP-DVQFLQVNYE--EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFS 118 (218)
Q Consensus 45 ~~~k~vlV~Fya~wC~~C~~~~--p~l~~la~~-~~-~v~~~~Vd~~--~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~ 118 (218)
..++.+||.|-+---.....|. -.+...... .. .+..++|+.. ...+++.-|.+..+|++.|+... |......
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~s-GtpLevi 94 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFS-GTPLEVI 94 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCC-CceeEEe
Confidence 3577888888888888888877 333333322 22 2566666653 34567788999999999988543 4466666
Q ss_pred cCccCHHHHHHHHHhhC
Q 027830 119 CTNATIKKFKDALAKHT 135 (218)
Q Consensus 119 ~g~~~~~~l~~~l~~~~ 135 (218)
.|..+.++|..-|++..
T Consensus 95 tg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 95 TGFVTADELASSIEKVW 111 (506)
T ss_pred eccccHHHHHHHHHHHH
Confidence 68888999999998876
No 247
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.06 E-value=0.9 Score=35.16 Aligned_cols=34 Identities=15% Similarity=-0.107 Sum_probs=28.4
Q ss_pred CCCCCCCHHHHHHHHhCCC---ceeeeCCCCCCCCCC
Q 027830 142 GPTKGLEEKELLALAANKD---LSFNYTPKPHPMPAP 175 (218)
Q Consensus 142 ~~~~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~~ 175 (218)
.....++.+++++.+.+.+ +|.||++||++|...
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l 79 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKML 79 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHh
Confidence 3456778899999999888 899999999999654
No 248
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=85.05 E-value=0.55 Score=33.36 Aligned_cols=32 Identities=19% Similarity=0.088 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHhCCC---ceeeeCCCCCCCCCC
Q 027830 144 TKGLEEKELLALAANKD---LSFNYTPKPHPMPAP 175 (218)
Q Consensus 144 ~~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~~ 175 (218)
+..++.++|...+.+.. ++.||++||.+|-..
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~ 36 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNL 36 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhh
Confidence 34567778888776544 889999999998653
No 249
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=84.87 E-value=0.4 Score=35.27 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=24.4
Q ss_pred CCCCCCHHHHHHH---HhCCC--ceeeeCCCCCCCCCC
Q 027830 143 PTKGLEEKELLAL---AANKD--LSFNYTPKPHPMPAP 175 (218)
Q Consensus 143 ~~~~l~~~~l~~~---~~~~~--~v~~y~p~~~~~p~~ 175 (218)
.+..+++++|+.. ..+.. ++.||+|||.+|..+
T Consensus 10 ~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l 47 (113)
T cd03006 10 PVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAA 47 (113)
T ss_pred CeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHH
Confidence 4667788888876 23333 888999999998654
No 250
>PHA02278 thioredoxin-like protein
Probab=84.77 E-value=0.8 Score=33.04 Aligned_cols=29 Identities=7% Similarity=-0.105 Sum_probs=22.3
Q ss_pred CHHHHHHHHhCCC--ceeeeCCCCCCCCCCc
Q 027830 148 EEKELLALAANKD--LSFNYTPKPHPMPAPA 176 (218)
Q Consensus 148 ~~~~l~~~~~~~~--~v~~y~p~~~~~p~~~ 176 (218)
+.++|...+.+.. ++.||++||++|..++
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~ 33 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILK 33 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHH
Confidence 4567777776555 8889999999997653
No 251
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=84.71 E-value=4.6 Score=30.54 Aligned_cols=47 Identities=11% Similarity=0.141 Sum_probs=34.7
Q ss_pred CcHHHHHHCCCCcCCEEEEEeCCC----------eeEEEEecCccCHHHHHHHHHhhC
Q 027830 88 EHKSMCYSLNVHVLPFFRFYRGAH----------GRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 88 ~~~~l~~~~~I~~~Pti~l~~~g~----------~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
-+|.+.++|+|+.+|+|++.+++. ..... .+|..+.+.-.+.|.+..
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~-v~Gdvsl~~ALe~ia~~g 115 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDV-VYGNVSLKGALEKMAQDG 115 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeE-EEecccHHHHHHHHHHhC
Confidence 368999999999999999997762 11222 338888887777777554
No 252
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=84.37 E-value=2.4 Score=31.05 Aligned_cols=34 Identities=18% Similarity=0.412 Sum_probs=25.3
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 89 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~ 89 (218)
+..|+.++|+.|++....|++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCC
Confidence 4468899999999988877663 566667776543
No 253
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=84.16 E-value=2.6 Score=27.46 Aligned_cols=51 Identities=8% Similarity=0.068 Sum_probs=32.6
Q ss_pred EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC-cHHHHHHCCCCcCCEEE
Q 027830 52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~-~~~l~~~~~I~~~Pti~ 105 (218)
..|+.++|+.|++..-.+++..-. +....+|... .+++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 457889999999988776554322 3444555443 24455555567899774
No 254
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=83.95 E-value=0.51 Score=32.98 Aligned_cols=32 Identities=22% Similarity=0.109 Sum_probs=24.5
Q ss_pred CCCCCHHHHHHHHhCCC---ceeeeCCCCCCCCCC
Q 027830 144 TKGLEEKELLALAANKD---LSFNYTPKPHPMPAP 175 (218)
Q Consensus 144 ~~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~~ 175 (218)
+..++.+++++.+.+.. +++||++||..|-.+
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~ 36 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKAL 36 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHH
Confidence 45567778888776653 888999999998653
No 255
>PRK12559 transcriptional regulator Spx; Provisional
Probab=83.66 E-value=2 Score=32.40 Aligned_cols=33 Identities=15% Similarity=0.394 Sum_probs=23.9
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 88 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~ 88 (218)
+..|+.++|+.|+.....|++- ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeC
Confidence 5678999999999988666543 45666666544
No 256
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=82.91 E-value=27 Score=29.29 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=58.7
Q ss_pred HHHHhcCCCeEEEEEECCC------ChhHHhHHHHHHHHHHHCC-CcEEEEEeCcCcHHHHHH----CCCCc--------
Q 027830 40 ESLWHAGDKLVVVDFFSPG------CGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYS----LNVHV-------- 100 (218)
Q Consensus 40 ~~l~~~~~k~vlV~Fya~w------C~~C~~~~p~l~~la~~~~-~v~~~~Vd~~~~~~l~~~----~~I~~-------- 100 (218)
+.|.. -+++|-|.+|.+- -..=+.+...|++.+...+ ++.+-.||-+.++...++ +||..
T Consensus 18 ~~L~~-L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~~~~~~~ 96 (271)
T PF09822_consen 18 KVLKS-LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQIEIVDN 96 (271)
T ss_pred HHHHh-CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccceeeccc
Confidence 44433 4556666666554 4444555666666666666 599999999777766665 88776
Q ss_pred --------CCEEEEEeCCCeeEEEEec---CccCHHHHHHHHHhhCCC
Q 027830 101 --------LPFFRFYRGAHGRVCSFSC---TNATIKKFKDALAKHTPD 137 (218)
Q Consensus 101 --------~Pti~l~~~g~~~~~~~~~---g~~~~~~l~~~l~~~~~~ 137 (218)
++.+++-.+++.+.+.+.. ...-..+|...|.+....
T Consensus 97 ~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~E~~lt~aI~~v~~~ 144 (271)
T PF09822_consen 97 GKASIVTVYGGIVVEYGDREEVIPFLDSMSEFNLEYELTSAIRRVTSD 144 (271)
T ss_pred ccccceeecCeEEEEECCeEEEeecccccccccHHHHHHHHHHHHhcc
Confidence 5565554444333333331 223366777778777754
No 257
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=82.85 E-value=16 Score=26.76 Aligned_cols=93 Identities=10% Similarity=0.087 Sum_probs=66.2
Q ss_pred HhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC---CcEEEEEeCcCcHHHHH----HCCCC-cCCEEEEEeCCCeeE
Q 027830 43 WHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEHKSMCY----SLNVH-VLPFFRFYRGAHGRV 114 (218)
Q Consensus 43 ~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~---~v~~~~Vd~~~~~~l~~----~~~I~-~~Pti~l~~~g~~~~ 114 (218)
...-+...++-|--+--+.-..+.+.++++|+.+. ++.|+.||-+..+-+.. -|+|. .-|.|=+.+-.....
T Consensus 16 edd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadS 95 (120)
T cd03074 16 EDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADS 95 (120)
T ss_pred hcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccc
Confidence 33346678888999999999999999999999874 49999999998876553 45665 358887764221112
Q ss_pred EEEec-C---ccCHHHHHHHHHhhC
Q 027830 115 CSFSC-T---NATIKKFKDALAKHT 135 (218)
Q Consensus 115 ~~~~~-g---~~~~~~l~~~l~~~~ 135 (218)
+-+.. + ..+.++|.+||+..+
T Consensus 96 vW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 96 VWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred eeEecccccccCcHHHHHHHHHhhC
Confidence 22221 2 367999999998753
No 258
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=82.84 E-value=0.82 Score=32.66 Aligned_cols=32 Identities=9% Similarity=-0.047 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHhCCC--ceeeeCCCCCCCCCC
Q 027830 144 TKGLEEKELLALAANKD--LSFNYTPKPHPMPAP 175 (218)
Q Consensus 144 ~~~l~~~~l~~~~~~~~--~v~~y~p~~~~~p~~ 175 (218)
+..++.++|+..+...+ ++.||+|||.+|...
T Consensus 3 v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~ 36 (108)
T cd02996 3 IVSLTSGNIDDILQSAELVLVNFYADWCRFSQML 36 (108)
T ss_pred eEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhh
Confidence 34567788888776655 788999999998653
No 259
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=80.67 E-value=1.2 Score=31.59 Aligned_cols=28 Identities=25% Similarity=0.180 Sum_probs=22.0
Q ss_pred CHHHHHHHHhCCC--ceeeeCCCCCCCCCC
Q 027830 148 EEKELLALAANKD--LSFNYTPKPHPMPAP 175 (218)
Q Consensus 148 ~~~~l~~~~~~~~--~v~~y~p~~~~~p~~ 175 (218)
+.++++.++.+.. ++.||++||.+|..+
T Consensus 6 ~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~ 35 (102)
T cd02948 6 NQEEWEELLSNKGLTVVDVYQEWCGPCKAV 35 (102)
T ss_pred CHHHHHHHHccCCeEEEEEECCcCHhHHHH
Confidence 5667888776655 778999999998654
No 260
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=80.51 E-value=6.1 Score=27.22 Aligned_cols=53 Identities=6% Similarity=0.012 Sum_probs=34.5
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc-HHHHHHCCCCcCCEEEE
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-KSMCYSLNVHVLPFFRF 106 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~-~~l~~~~~I~~~Pti~l 106 (218)
+..|+.+.|+.|++.+-.+.+..-. +.+..+|.... ..+.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~---~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIP---HEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 4557788899999887666554322 45566665433 34555556678999873
No 261
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=80.38 E-value=1.2 Score=31.12 Aligned_cols=30 Identities=13% Similarity=0.020 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHhCCC-ceeeeCCCCCCCCC
Q 027830 145 KGLEEKELLALAANKD-LSFNYTPKPHPMPA 174 (218)
Q Consensus 145 ~~l~~~~l~~~~~~~~-~v~~y~p~~~~~p~ 174 (218)
..++.++|...+.++. ++.||++||.+|-.
T Consensus 3 ~~l~~~~f~~~~~~~~~lv~f~a~wC~~C~~ 33 (102)
T cd03005 3 LELTEDNFDHHIAEGNHFVKFFAPWCGHCKR 33 (102)
T ss_pred eECCHHHHHHHhhcCCEEEEEECCCCHHHHH
Confidence 3567778888877666 77899999999754
No 262
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=79.34 E-value=3.9 Score=34.02 Aligned_cols=47 Identities=19% Similarity=0.354 Sum_probs=38.1
Q ss_pred HHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHH-----CCCcEEEEEeCc
Q 027830 41 SLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM-----NPDVQFLQVNYE 87 (218)
Q Consensus 41 ~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~-----~~~v~~~~Vd~~ 87 (218)
.+.+..++++||-+-..+|..|......|+.|..+ +.+|.|+.||-.
T Consensus 20 pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 20 PMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred HhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 34445789999999999999999988888877644 567999999864
No 263
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=79.00 E-value=3.5 Score=33.46 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=33.0
Q ss_pred HHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830 90 KSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 90 ~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
..+++++++.++||+.+-.+|+-.++...-...+.+.+..+|.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 4578899999999999999887323222212556788888887765
No 264
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=78.54 E-value=15 Score=30.06 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=46.5
Q ss_pred CChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCCC
Q 027830 58 GCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD 137 (218)
Q Consensus 58 wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~ 137 (218)
.|+.|+++.-.+. .+.....+-.||....++-.+..-=.+=|-++.| +++ +..+...++++|++.++.
T Consensus 20 dcpf~qr~~m~L~---~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~-d~~--------~~tDs~~Ie~~Lee~l~~ 87 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKF-DEK--------WVTDSDKIEEFLEEKLPP 87 (221)
T ss_pred CChhHHHHHHHHH---HcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEe-CCc--------eeccHHHHHHHHHHhcCC
Confidence 4888888776665 3333478889999887766655444444445555 444 346678899999999965
Q ss_pred C
Q 027830 138 R 138 (218)
Q Consensus 138 ~ 138 (218)
.
T Consensus 88 p 88 (221)
T KOG1422|consen 88 P 88 (221)
T ss_pred C
Confidence 4
No 265
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=78.48 E-value=0.7 Score=32.10 Aligned_cols=52 Identities=8% Similarity=0.073 Sum_probs=42.2
Q ss_pred EECCCChhHHhHHHHHHHHHHHC-CC-cEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830 54 FFSPGCGGCKALHPKICQLAEMN-PD-VQFLQVNYEEHKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 54 Fya~wC~~C~~~~p~l~~la~~~-~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~ 105 (218)
|-+..-+.+++....+..+.+.+ ++ +.+--||+.++++++..++|-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 44455566677888888888764 43 899999999999999999999999975
No 266
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=78.01 E-value=4.2 Score=33.45 Aligned_cols=38 Identities=24% Similarity=0.409 Sum_probs=29.7
Q ss_pred CCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEE
Q 027830 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV 84 (218)
Q Consensus 47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~V 84 (218)
.+..++.|+...|++|+...+.+.+.....+++++...
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~ 121 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLR 121 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEE
Confidence 47899999999999999999998886666665544443
No 267
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=77.73 E-value=1.9 Score=31.99 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHhCCC--ceeeeC--CCCC
Q 027830 144 TKGLEEKELLALAANKD--LSFNYT--PKPH 170 (218)
Q Consensus 144 ~~~l~~~~l~~~~~~~~--~v~~y~--p~~~ 170 (218)
+..|+.++|+..+...+ +|.||+ ||++
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~ 33 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGE 33 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCCC
Confidence 34678899999998888 788999 8888
No 268
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=77.66 E-value=0.59 Score=32.48 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHhC-CC--ceeeeCCCCCCCCC
Q 027830 145 KGLEEKELLALAAN-KD--LSFNYTPKPHPMPA 174 (218)
Q Consensus 145 ~~l~~~~l~~~~~~-~~--~v~~y~p~~~~~p~ 174 (218)
..++.++|...+.+ .. +++||++||.+|..
T Consensus 2 ~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~ 34 (103)
T PF00085_consen 2 IVLTDENFEKFINESDKPVVVYFYAPWCPPCKA 34 (103)
T ss_dssp EEESTTTHHHHHTTTSSEEEEEEESTTSHHHHH
T ss_pred EECCHHHHHHHHHccCCCEEEEEeCCCCCcccc
Confidence 34677889998887 33 89999999999854
No 269
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=77.53 E-value=1.5 Score=32.04 Aligned_cols=32 Identities=13% Similarity=-0.102 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHhCCC---ceeeeCCCCCCCCCC
Q 027830 144 TKGLEEKELLALAANKD---LSFNYTPKPHPMPAP 175 (218)
Q Consensus 144 ~~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~~ 175 (218)
+..++..+|...+.+.. ++.||++|+..|..+
T Consensus 3 v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~ 37 (114)
T cd02992 3 VIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAF 37 (114)
T ss_pred eEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHH
Confidence 45678888888877664 888999999998654
No 270
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=77.39 E-value=5.5 Score=31.35 Aligned_cols=51 Identities=24% Similarity=0.314 Sum_probs=33.9
Q ss_pred CCCeEEEEEECCCC-hhHHhHHHHHHHHHHHC----CCcEEEEEeCcC---cHHHHHHC
Q 027830 46 GDKLVVVDFFSPGC-GGCKALHPKICQLAEMN----PDVQFLQVNYEE---HKSMCYSL 96 (218)
Q Consensus 46 ~~k~vlV~Fya~wC-~~C~~~~p~l~~la~~~----~~v~~~~Vd~~~---~~~l~~~~ 96 (218)
.+|+++|.|.=..| ..|-.+...+.++.+.+ .+++++.|.+|- .++..++|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHH
Confidence 68999999999999 67887777776665543 347777777752 34444444
No 271
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=77.14 E-value=1.6 Score=31.65 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=23.5
Q ss_pred CCCCCCHHHHHHHHhCC---C--ceeeeCCCCCCCCCC
Q 027830 143 PTKGLEEKELLALAANK---D--LSFNYTPKPHPMPAP 175 (218)
Q Consensus 143 ~~~~l~~~~l~~~~~~~---~--~v~~y~p~~~~~p~~ 175 (218)
.+..++.++|...+.+. . ++.||+||+.+|-.+
T Consensus 5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l 42 (113)
T cd02957 5 EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKIL 42 (113)
T ss_pred eEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHH
Confidence 34556667787776654 3 778999999998643
No 272
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=77.02 E-value=1.4 Score=31.66 Aligned_cols=32 Identities=28% Similarity=0.203 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHhC----CC-ceeeeCCCCCCCCCC
Q 027830 144 TKGLEEKELLALAAN----KD-LSFNYTPKPHPMPAP 175 (218)
Q Consensus 144 ~~~l~~~~l~~~~~~----~~-~v~~y~p~~~~~p~~ 175 (218)
+..++.++|+++... +. ++.||++||.+|..+
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~ 39 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAM 39 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHH
Confidence 456777888888742 22 888999999998654
No 273
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=76.10 E-value=5 Score=30.26 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=23.9
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 88 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~ 88 (218)
+..|+.++|+.|+.....|++- ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECCC
Confidence 4568899999999987666543 56677777654
No 274
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.64 E-value=6.6 Score=26.84 Aligned_cols=54 Identities=19% Similarity=0.122 Sum_probs=34.7
Q ss_pred EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC--------------cH--HHHHHCCCCcCCEEEEEeCCC
Q 027830 52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE--------------HK--SMCYSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~--------------~~--~l~~~~~I~~~Pti~l~~~g~ 111 (218)
+.|+|.-|+.|..+...++++. +.+-.|++.. .+ +-.+..|--++|.+.+ .+|+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~-----v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~ 74 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN-----VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGK 74 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC-----CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCc
Confidence 5699999999988777776653 3333344322 11 1245667778999865 4665
No 275
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=75.47 E-value=13 Score=24.52 Aligned_cols=54 Identities=9% Similarity=0.015 Sum_probs=35.2
Q ss_pred EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCc----CcHHHHHHCCCCcCCEEEEEeCC
Q 027830 52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE----EHKSMCYSLNVHVLPFFRFYRGA 110 (218)
Q Consensus 52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~----~~~~l~~~~~I~~~Pti~l~~~g 110 (218)
..||.+.|+.|++.+-.+.+..- ++.+..+|.. ..+++.+.-.-..+|++. .+|
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g 59 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGD 59 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECC
Confidence 46888899999888755555433 2566667653 234455555667899995 355
No 276
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=75.08 E-value=44 Score=27.21 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=48.9
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEE--EEeCcC----------------cHHHHHHCCCCcCCEEEEEeCCCe
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFL--QVNYEE----------------HKSMCYSLNVHVLPFFRFYRGAHG 112 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~--~Vd~~~----------------~~~l~~~~~I~~~Pti~l~~~g~~ 112 (218)
|=.|.+..|..|=-....|.+|+.+ ++|..+ .||+-+ ....+..++..++=|=-++.||.
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~- 79 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGR- 79 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTT-
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCe-
Confidence 3468899999999999999999998 475544 455422 34556677777655544556886
Q ss_pred eEEEEecCccCHHHHHHHHHhhCCC
Q 027830 113 RVCSFSCTNATIKKFKDALAKHTPD 137 (218)
Q Consensus 113 ~~~~~~~g~~~~~~l~~~l~~~~~~ 137 (218)
... ...+...+...|.+....
T Consensus 80 --~~~--~g~~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 80 --EHR--VGSDRAAVEAAIQAARAR 100 (202)
T ss_dssp --EEE--ETT-HHHHHHHHHHHHHT
T ss_pred --eee--eccCHHHHHHHHHHhhcc
Confidence 222 356778888888777643
No 277
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=73.75 E-value=10 Score=29.06 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=51.5
Q ss_pred eEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCC----cCCEEEEEeCCCeeEEEEecCccCH
Q 027830 49 LVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH----VLPFFRFYRGAHGRVCSFSCTNATI 124 (218)
Q Consensus 49 ~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~----~~Pti~l~~~g~~~~~~~~~g~~~~ 124 (218)
.-++.|++|.|+=|..-...++ ..++.+-.+..++-..+.++|+|. +-=|.+ .+|. .++ |-..+
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk-----~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~V--I~Gy--~vE---GHVPa 93 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK-----ANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAV--INGY--YVE---GHVPA 93 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH-----hCCcEEEEeecCcHHHHHHhcCCChhhccccEEE--EcCE--EEe---ccCCH
Confidence 4578899999999987555544 235788888888888888888875 333333 2543 333 55678
Q ss_pred HHHHHHHHhhC
Q 027830 125 KKFKDALAKHT 135 (218)
Q Consensus 125 ~~l~~~l~~~~ 135 (218)
+.+..++++.-
T Consensus 94 ~aI~~ll~~~p 104 (149)
T COG3019 94 EAIARLLAEKP 104 (149)
T ss_pred HHHHHHHhCCC
Confidence 88888887654
No 278
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=73.34 E-value=2.1 Score=29.83 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHhCCC--ceeeeCCCCCCCCC
Q 027830 145 KGLEEKELLALAANKD--LSFNYTPKPHPMPA 174 (218)
Q Consensus 145 ~~l~~~~l~~~~~~~~--~v~~y~p~~~~~p~ 174 (218)
..++..++...+.+.. ++.||++||..|-.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~ 34 (104)
T cd02997 3 VHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKK 34 (104)
T ss_pred EEechHhHHHHHhhCCCEEEEEECCCCHHHHH
Confidence 3456667777776665 78899999999754
No 279
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=73.10 E-value=2.7 Score=30.61 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=20.0
Q ss_pred HHHHHHHhCCC--ceeeeCCCCCCCCCC
Q 027830 150 KELLALAANKD--LSFNYTPKPHPMPAP 175 (218)
Q Consensus 150 ~~l~~~~~~~~--~v~~y~p~~~~~p~~ 175 (218)
++|...+.+.. ++.||+||+..|..+
T Consensus 13 ~~~~~~i~~~~~vvV~f~a~~c~~C~~~ 40 (113)
T cd02989 13 KEFFEIVKSSERVVCHFYHPEFFRCKIM 40 (113)
T ss_pred HHHHHHHhCCCcEEEEEECCCCccHHHH
Confidence 66777666555 888999999998754
No 280
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=72.91 E-value=5.7 Score=28.58 Aligned_cols=57 Identities=11% Similarity=0.182 Sum_probs=37.0
Q ss_pred EECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCC--cCCEEEEE-eCCC
Q 027830 54 FFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH--VLPFFRFY-RGAH 111 (218)
Q Consensus 54 Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~--~~Pti~l~-~~g~ 111 (218)
||-.+|+-|......+.... ....+.|+.+.-.....+...+++. ..-+.+.. .+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD-RGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC-CCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 79999999999998887772 2233677666444444555677765 35554443 4553
No 281
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=72.85 E-value=13 Score=23.92 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=33.2
Q ss_pred EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCc----CcHHHHHHCCCCcCCEEEE
Q 027830 52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE----EHKSMCYSLNVHVLPFFRF 106 (218)
Q Consensus 52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~----~~~~l~~~~~I~~~Pti~l 106 (218)
..|+.++|+.|++.+-.+.+..-. +....+|.. ..+.+.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIP---YEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC---cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 357889999999887776655332 455556542 2244444445668999863
No 282
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=72.56 E-value=4.9 Score=31.82 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=26.5
Q ss_pred cHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHH
Q 027830 89 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL 131 (218)
Q Consensus 89 ~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l 131 (218)
+...+.+.||.++||+++ +|+ . ... |..+.+.|.+.|
T Consensus 164 ~~~~a~~~gv~G~Pt~vv--~g~--~-~~~-G~~~~~~~~~~i 200 (201)
T cd03024 164 DEARARQLGISGVPFFVF--NGK--Y-AVS-GAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHCCCCcCCEEEE--CCe--E-eec-CCCCHHHHHHHh
Confidence 345677899999999987 543 1 123 788888887765
No 283
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=72.48 E-value=21 Score=29.07 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=35.5
Q ss_pred CCCeEEEEEECCCCh-hHHhHHHHHHHHHHHCC-----CcEEEEEeCc---CcHHHHHHCCC
Q 027830 46 GDKLVVVDFFSPGCG-GCKALHPKICQLAEMNP-----DVQFLQVNYE---EHKSMCYSLNV 98 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~-~C~~~~p~l~~la~~~~-----~v~~~~Vd~~---~~~~l~~~~~I 98 (218)
.+++++|.|.=+.|+ .|-.....+.++.++.. +++++.|.+| +.++..++|..
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 589999999977775 58888877777766654 2555544443 23555666665
No 284
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=72.05 E-value=2.3 Score=29.61 Aligned_cols=31 Identities=19% Similarity=0.076 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHhCCC---ceeeeCCCCCCCCCC
Q 027830 145 KGLEEKELLALAANKD---LSFNYTPKPHPMPAP 175 (218)
Q Consensus 145 ~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~~ 175 (218)
..++..++...+.++. +++||++||.+|...
T Consensus 3 ~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~ 36 (103)
T cd03001 3 VELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNL 36 (103)
T ss_pred EEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHH
Confidence 4566777887765443 788999999987543
No 285
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=70.76 E-value=5.5 Score=29.60 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=20.9
Q ss_pred CCCCCCCCHHHHHHHHhCCC--ceeeeCCCCC
Q 027830 141 LGPTKGLEEKELLALAANKD--LSFNYTPKPH 170 (218)
Q Consensus 141 ~~~~~~l~~~~l~~~~~~~~--~v~~y~p~~~ 170 (218)
...+..+++++|++.+.+++ ++.||++|++
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc 39 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVES 39 (120)
T ss_pred CcceeeCChhhHHHHHHhCCceEEEEECCCcC
Confidence 34567788999999998887 4445555444
No 286
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=70.74 E-value=3.3 Score=29.40 Aligned_cols=28 Identities=11% Similarity=-0.116 Sum_probs=19.7
Q ss_pred CHHHHHHHHhCC--C--ceeeeCCCCCCCCCC
Q 027830 148 EEKELLALAANK--D--LSFNYTPKPHPMPAP 175 (218)
Q Consensus 148 ~~~~l~~~~~~~--~--~v~~y~p~~~~~p~~ 175 (218)
+.++|.+.+... . ++.||++||.+|..+
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~ 33 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKI 33 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHH
Confidence 345677766542 2 888999999998643
No 287
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=69.08 E-value=5.6 Score=31.47 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=27.6
Q ss_pred CCCCCCCCCCCH-HHHHHHHhCCC-----ceeeeCCCCCCCCCC
Q 027830 138 RCGLGPTKGLEE-KELLALAANKD-----LSFNYTPKPHPMPAP 175 (218)
Q Consensus 138 ~~~~~~~~~l~~-~~l~~~~~~~~-----~v~~y~p~~~~~p~~ 175 (218)
....+.+..++. ++|...+.+.. ++.||++|+..|-.+
T Consensus 58 ~~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m 101 (175)
T cd02987 58 GRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAAL 101 (175)
T ss_pred cCCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHH
Confidence 344566777777 88888876532 777999999998543
No 288
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=68.51 E-value=7.3 Score=30.53 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=24.7
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNP 77 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~ 77 (218)
|.+|+.+.|+.|-...+.+.++.+.++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 668999999999999999999999984
No 289
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=65.89 E-value=7.8 Score=30.01 Aligned_cols=34 Identities=18% Similarity=-0.039 Sum_probs=25.1
Q ss_pred CCCCCCCHHHHHHHHh-CCC---ceeeeCCCCCCCCCC
Q 027830 142 GPTKGLEEKELLALAA-NKD---LSFNYTPKPHPMPAP 175 (218)
Q Consensus 142 ~~~~~l~~~~l~~~~~-~~~---~v~~y~p~~~~~p~~ 175 (218)
..+..++.++|+..+. ++. ++.||+||+.+|..+
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l 65 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNF 65 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHH
Confidence 3466777888888764 322 889999999998653
No 290
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=63.90 E-value=6.2 Score=29.20 Aligned_cols=32 Identities=9% Similarity=-0.196 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHhCCC--ceeeeCCCCCCCCCC
Q 027830 144 TKGLEEKELLALAANKD--LSFNYTPKPHPMPAP 175 (218)
Q Consensus 144 ~~~l~~~~l~~~~~~~~--~v~~y~p~~~~~p~~ 175 (218)
...++.++|...+.+++ +++|+++||..|-.+
T Consensus 8 ~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~ 41 (122)
T TIGR01295 8 LEVTTVVRALEALDKKETATFFIGRKTCPYCRKF 41 (122)
T ss_pred ceecCHHHHHHHHHcCCcEEEEEECCCChhHHHH
Confidence 34567788888888766 889999999998553
No 291
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=63.78 E-value=4.7 Score=29.05 Aligned_cols=29 Identities=7% Similarity=-0.256 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHh-----CCCceeeeCCCCCCCCC
Q 027830 146 GLEEKELLALAA-----NKDLSFNYTPKPHPMPA 174 (218)
Q Consensus 146 ~l~~~~l~~~~~-----~~~~v~~y~p~~~~~p~ 174 (218)
.++.++|...+. ...++.||+|||.+|-.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~ 41 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIH 41 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHH
Confidence 345566654432 12288999999999854
No 292
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=63.47 E-value=4 Score=28.73 Aligned_cols=26 Identities=8% Similarity=-0.216 Sum_probs=19.1
Q ss_pred HHHHHHHhCCC--ceeeeCCCCCCCCCC
Q 027830 150 KELLALAANKD--LSFNYTPKPHPMPAP 175 (218)
Q Consensus 150 ~~l~~~~~~~~--~v~~y~p~~~~~p~~ 175 (218)
++|.+...+.. ++.||++||..|..+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~ 29 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVN 29 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHH
Confidence 34566555555 788999999998654
No 293
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=63.46 E-value=11 Score=31.69 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=56.0
Q ss_pred EEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC---cHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHH
Q 027830 50 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE---HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKK 126 (218)
Q Consensus 50 vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~---~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~ 126 (218)
-++.+.+..|+..--++..+.+.+.. +++++.|+-+. -+.+...+.-.....|+|++| ..|..+......
T Consensus 54 nvLL~G~rGtGKSSlVkall~~y~~~--GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DD-----LsFe~~d~~yk~ 126 (249)
T PF05673_consen 54 NVLLWGARGTGKSSLVKALLNEYADQ--GLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDD-----LSFEEGDTEYKA 126 (249)
T ss_pred ceEEecCCCCCHHHHHHHHHHHHhhc--CceEEEECHHHhccHHHHHHHHhcCCCCEEEEecC-----CCCCCCcHHHHH
Confidence 34558999999998888888777765 47888776543 456666666566766766644 335556777888
Q ss_pred HHHHHHhhCC
Q 027830 127 FKDALAKHTP 136 (218)
Q Consensus 127 l~~~l~~~~~ 136 (218)
|+..|+.-+.
T Consensus 127 LKs~LeGgle 136 (249)
T PF05673_consen 127 LKSVLEGGLE 136 (249)
T ss_pred HHHHhcCccc
Confidence 8888876663
No 294
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.38 E-value=32 Score=28.50 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=38.7
Q ss_pred CCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCC-CcCCEE-EEEeCCC
Q 027830 56 SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNV-HVLPFF-RFYRGAH 111 (218)
Q Consensus 56 a~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I-~~~Pti-~l~~~g~ 111 (218)
.|-|+..+++..++... ++.|...|+-.+.++.+..+. ..+||| -+|.+|.
T Consensus 151 ~P~CGFS~~~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GE 203 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGE 203 (227)
T ss_pred cccccccHHHHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCE
Confidence 66788888888777654 577889999888887766553 468998 6788875
No 295
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=62.31 E-value=4.3 Score=28.09 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHhCCC---ceeeeCCCCCCCCC
Q 027830 146 GLEEKELLALAANKD---LSFNYTPKPHPMPA 174 (218)
Q Consensus 146 ~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~ 174 (218)
.++.++++..+.+.. +++||++||..|-.
T Consensus 4 ~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~ 35 (105)
T cd02998 4 ELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKN 35 (105)
T ss_pred EcchhcHHHHhcCCCCcEEEEEECCCCHHHHh
Confidence 455667777665444 78899999999854
No 296
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=60.36 E-value=11 Score=29.42 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=0.0
Q ss_pred CcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHH
Q 027830 86 YEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL 131 (218)
Q Consensus 86 ~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l 131 (218)
+.++...+.++||.++||+++ +|+ .+. |....+.|.+.|
T Consensus 153 l~~~~~~a~~~gi~gvPtfvv--~g~----~~~-G~~~l~~~~~~l 191 (192)
T cd03022 153 LRANTEEAIARGVFGVPTFVV--DGE----MFW-GQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHHHHHcCCCcCCeEEE--CCe----eec-ccccHHHHHHHh
No 297
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=60.33 E-value=7.8 Score=26.14 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHhCCC--ceeeeCCCCCCCCCC
Q 027830 146 GLEEKELLALAANKD--LSFNYTPKPHPMPAP 175 (218)
Q Consensus 146 ~l~~~~l~~~~~~~~--~v~~y~p~~~~~p~~ 175 (218)
.++..++...+.+.. +++||++||..|...
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~ 33 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKAL 33 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhh
Confidence 356778888888874 888999999987653
No 298
>PTZ00051 thioredoxin; Provisional
Probab=59.94 E-value=7.7 Score=26.71 Aligned_cols=27 Identities=11% Similarity=0.098 Sum_probs=20.4
Q ss_pred CHHHHHHHHhCCC--ceeeeCCCCCCCCC
Q 027830 148 EEKELLALAANKD--LSFNYTPKPHPMPA 174 (218)
Q Consensus 148 ~~~~l~~~~~~~~--~v~~y~p~~~~~p~ 174 (218)
+.+++........ ++.||++|+..|-.
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~ 35 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAEWCGPCKR 35 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHH
Confidence 3556777776655 77899999999764
No 299
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=59.83 E-value=5.1 Score=33.14 Aligned_cols=33 Identities=15% Similarity=0.001 Sum_probs=25.8
Q ss_pred CCCCCCHHHHHHHHhC-------CCceeeeCCCCCCCCCC
Q 027830 143 PTKGLEEKELLALAAN-------KDLSFNYTPKPHPMPAP 175 (218)
Q Consensus 143 ~~~~l~~~~l~~~~~~-------~~~v~~y~p~~~~~p~~ 175 (218)
.+..+++++|++.+.. ..++.||+|||.+|..+
T Consensus 31 ~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~ 70 (224)
T PTZ00443 31 ALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKM 70 (224)
T ss_pred CcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHH
Confidence 4677888899987753 23899999999998654
No 300
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=59.35 E-value=7.2 Score=26.77 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=20.2
Q ss_pred CHHHHHHHHhCCC--ceeeeCCCCCCCCC
Q 027830 148 EEKELLALAANKD--LSFNYTPKPHPMPA 174 (218)
Q Consensus 148 ~~~~l~~~~~~~~--~v~~y~p~~~~~p~ 174 (218)
+.++|...+.... ++.||++||..|-.
T Consensus 2 ~~~~~~~~~~~~~~~~i~f~~~~C~~c~~ 30 (102)
T TIGR01126 2 TASNFDDIVLSNKDVLVEFYAPWCGHCKN 30 (102)
T ss_pred chhhHHHHhccCCcEEEEEECCCCHHHHh
Confidence 4566777766444 88899999999855
No 301
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=59.30 E-value=76 Score=24.07 Aligned_cols=107 Identities=14% Similarity=0.194 Sum_probs=58.5
Q ss_pred cccccCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhH-HhHHHHHHHHHHH--CCCcEEEEEeCcCcHH---HHHHC
Q 027830 23 PLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGC-KALHPKICQLAEM--NPDVQFLQVNYEEHKS---MCYSL 96 (218)
Q Consensus 23 ~l~~~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C-~~~~p~l~~la~~--~~~v~~~~Vd~~~~~~---l~~~~ 96 (218)
.+....+.++.+.++..+.+.+ ....+|| +-.+-|+=- -..+|-....... -| =.++.|=...+.+ -++.|
T Consensus 12 ELt~~Gf~eL~T~e~Vd~~~~~-~~GTtlV-vVNSVCGCAag~ARPa~~~al~~~kkP-D~lvTVFAGqDkEAt~~aR~y 88 (136)
T PF06491_consen 12 ELTRAGFEELTTAEEVDEALKN-KEGTTLV-VVNSVCGCAAGNARPAAAMALQNDKKP-DHLVTVFAGQDKEATAKAREY 88 (136)
T ss_dssp HHHTTT-EE--SHHHHHHHHHH---SEEEE-EEE-SSHHHHHTHHHHHHHHHHHSS---SEEEEEETTTSHHHHHHHHHT
T ss_pred HHHHcCccccCCHHHHHHHHhC-CCCcEEE-EEeccccccccccCHHHHHHHhCCCCC-CceEEeccCCCHHHHHHHHHh
Confidence 3566788999999999999974 3445444 345667633 3446666554433 23 3445554443332 22333
Q ss_pred CC---CcCCEEEEEeCCCeeEEEE----ecCccCHHHHHHHHHhh
Q 027830 97 NV---HVLPFFRFYRGAHGRVCSF----SCTNATIKKFKDALAKH 134 (218)
Q Consensus 97 ~I---~~~Pti~l~~~g~~~~~~~----~~g~~~~~~l~~~l~~~ 134 (218)
=. -+-|++.+|+||+ ++.+ .+-+++.+.|.+-|...
T Consensus 89 f~~~pPSSPS~ALfKdGe--lvh~ieRh~IEGr~a~~Ia~~L~~a 131 (136)
T PF06491_consen 89 FEPYPPSSPSIALFKDGE--LVHFIERHHIEGRPAEEIAENLQDA 131 (136)
T ss_dssp STTS---SSEEEEEETTE--EEEEE-GGGTTTS-HHHHHHHHHHH
T ss_pred cCCCCCCCchheeeeCCE--EEEEeehhhcCCCCHHHHHHHHHHH
Confidence 22 3679999999987 4444 23577888887777654
No 302
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=58.69 E-value=97 Score=25.09 Aligned_cols=89 Identities=11% Similarity=0.005 Sum_probs=52.7
Q ss_pred CCeEEEEEE-CCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCc----------------------------CcHHHHHH
Q 027830 47 DKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE----------------------------EHKSMCYS 95 (218)
Q Consensus 47 ~k~vlV~Fy-a~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~----------------------------~~~~l~~~ 95 (218)
+|.+++.|| ++.-.-|-.....+.+...++. |+.++.+.+| .+.++++.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 577788887 6666777666666666665554 4666666554 25578888
Q ss_pred CCCCcCC---E---EEEE-eCCCeeEEE-Eec-CccCHHHHHHHHHhhC
Q 027830 96 LNVHVLP---F---FRFY-RGAHGRVCS-FSC-TNATIKKFKDALAKHT 135 (218)
Q Consensus 96 ~~I~~~P---t---i~l~-~~g~~~~~~-~~~-g~~~~~~l~~~l~~~~ 135 (218)
||+-.-. + +.++ .+|..|... +.. -+++.+++...|+...
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq 161 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQ 161 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 8875311 3 2233 233323222 222 3788898888776544
No 303
>PRK09381 trxA thioredoxin; Provisional
Probab=57.95 E-value=6.8 Score=27.71 Aligned_cols=31 Identities=13% Similarity=-0.010 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHHhCCC---ceeeeCCCCCCCCC
Q 027830 144 TKGLEEKELLALAANKD---LSFNYTPKPHPMPA 174 (218)
Q Consensus 144 ~~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~ 174 (218)
+..++.+++...+.+.+ ++.||++||..|..
T Consensus 5 v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~ 38 (109)
T PRK09381 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKM 38 (109)
T ss_pred ceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHH
Confidence 34455566765443322 88899999999864
No 304
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=57.90 E-value=81 Score=23.96 Aligned_cols=88 Identities=14% Similarity=0.137 Sum_probs=58.4
Q ss_pred CCCeEEEEEECCCCh----hHHhHH--HHHHHHHHHCCCcEEEEEeCcCcH------------------HHHHHCCCCcC
Q 027830 46 GDKLVVVDFFSPGCG----GCKALH--PKICQLAEMNPDVQFLQVNYEEHK------------------SMCYSLNVHVL 101 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~----~C~~~~--p~l~~la~~~~~v~~~~Vd~~~~~------------------~l~~~~~I~~~ 101 (218)
..|+.+|+.+++-.. .|+... +.+.++.+ .++.+-.-|++... ...+.++...+
T Consensus 20 e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f 97 (136)
T cd02990 20 DRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS--QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL 97 (136)
T ss_pred hcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH--cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC
Confidence 588999999999874 444442 33333333 24666666665432 24566789999
Q ss_pred CEEEEEeCC--CeeEEEEecCccCHHHHHHHHHhhC
Q 027830 102 PFFRFYRGA--HGRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 102 Pti~l~~~g--~~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
|.+.++-.. .-.++....|..+.+++...|....
T Consensus 98 P~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 98 PAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 999887432 2245566669999999999887654
No 305
>PRK10996 thioredoxin 2; Provisional
Probab=57.78 E-value=11 Score=28.29 Aligned_cols=32 Identities=13% Similarity=-0.033 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHhCCC--ceeeeCCCCCCCCCC
Q 027830 144 TKGLEEKELLALAANKD--LSFNYTPKPHPMPAP 175 (218)
Q Consensus 144 ~~~l~~~~l~~~~~~~~--~v~~y~p~~~~~p~~ 175 (218)
+..++..++....++.. ++.||++|+..|..+
T Consensus 37 ~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~ 70 (139)
T PRK10996 37 VINATGETLDKLLQDDLPVVIDFWAPWCGPCRNF 70 (139)
T ss_pred CEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHH
Confidence 44567788888776555 888999999997653
No 306
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=57.47 E-value=25 Score=28.71 Aligned_cols=42 Identities=7% Similarity=0.104 Sum_probs=30.9
Q ss_pred cHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHh
Q 027830 89 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK 133 (218)
Q Consensus 89 ~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~ 133 (218)
+|.+.++|+|+.+|+|++...+. .... +|+.+..+-.+.+.+
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~~--yD~I-~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQG--YDII-RGNLRVGQALEKVAA 192 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCCC--CCEE-EecccHHHHHHHHHh
Confidence 68899999999999999985533 3333 378887766666654
No 307
>PLN02309 5'-adenylylsulfate reductase
Probab=55.93 E-value=7.6 Score=35.65 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=26.4
Q ss_pred CCCCCCCHHHHHHHHh---CCC--ceeeeCCCCCCCCCC
Q 027830 142 GPTKGLEEKELLALAA---NKD--LSFNYTPKPHPMPAP 175 (218)
Q Consensus 142 ~~~~~l~~~~l~~~~~---~~~--~v~~y~p~~~~~p~~ 175 (218)
..+..++.++|+.++. ... +|.||+|||.+|..+
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m 383 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAM 383 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHH
Confidence 3477789999998874 222 889999999999654
No 308
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=55.63 E-value=43 Score=21.66 Aligned_cols=52 Identities=4% Similarity=-0.051 Sum_probs=32.7
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCc----CcHHHHHHCCCCcCCEEE
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE----EHKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~----~~~~l~~~~~I~~~Pti~ 105 (218)
+..|+.+.|+.|++..-.+.+..-. +.+..++.. ..+.+.+......+|++.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~ 57 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALE 57 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEE
Confidence 4456677799999888776665332 455555542 234555556677899875
No 309
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=54.54 E-value=8.3 Score=35.48 Aligned_cols=33 Identities=21% Similarity=0.131 Sum_probs=26.0
Q ss_pred CCCCCCHHHHHHHHh---CCC--ceeeeCCCCCCCCCC
Q 027830 143 PTKGLEEKELLALAA---NKD--LSFNYTPKPHPMPAP 175 (218)
Q Consensus 143 ~~~~l~~~~l~~~~~---~~~--~v~~y~p~~~~~p~~ 175 (218)
.+..++.++|+.++. ..+ ++.||+|||..|..+
T Consensus 352 ~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m 389 (463)
T TIGR00424 352 NVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAM 389 (463)
T ss_pred CeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHH
Confidence 467789999999875 222 888999999998654
No 310
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=54.14 E-value=12 Score=29.35 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=18.0
Q ss_pred HHHHHHCCCCcCCEEEEEeCCC
Q 027830 90 KSMCYSLNVHVLPFFRFYRGAH 111 (218)
Q Consensus 90 ~~l~~~~~I~~~Pti~l~~~g~ 111 (218)
...+.++||.++||+++.+++.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 4566789999999999997654
No 311
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=54.07 E-value=1.6e+02 Score=26.23 Aligned_cols=117 Identities=12% Similarity=0.174 Sum_probs=68.0
Q ss_pred cccCcEEecChhhHHHHHHhcCCCeEEEEEECCC-ChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCC
Q 027830 25 VHRLALELGRHKDLVESLWHAGDKLVVVDFFSPG-CGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLP 102 (218)
Q Consensus 25 ~~~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~w-C~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~P 102 (218)
...+|..|++..++...-.- .+...||=|+.+- ..+ ...|++.|..+.. |.|..+- ++.+++++++. .=
T Consensus 144 ~edPVeiIn~~~e~~~Fe~i-ed~~klIGyFk~~~s~~----yk~FeeAAe~F~p~IkFfAtf---d~~vAk~L~lK-~n 214 (383)
T PF01216_consen 144 LEDPVEIINNKHELKAFERI-EDDIKLIGYFKSEDSEH----YKEFEEAAEHFQPYIKFFATF---DKKVAKKLGLK-LN 214 (383)
T ss_dssp HSSSEEEE-SHHHHHHHHH---SS-EEEEE-SSTTSHH----HHHHHHHHHHCTTTSEEEEE----SHHHHHHHT-S-TT
T ss_pred cccchhhhcChhhhhhhhhc-ccceeEEEEeCCCCcHH----HHHHHHHHHhhcCceeEEEEe---cchhhhhcCcc-cc
Confidence 34567788888777444332 3346666666554 433 3457788888865 8888754 68889999997 77
Q ss_pred EEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHH
Q 027830 103 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLAL 155 (218)
Q Consensus 103 ti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~ 155 (218)
.+-||..=....+.......+.++|++||++|-... .+.+...++-..
T Consensus 215 ev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rpt-----lrkl~~~~m~e~ 262 (383)
T PF01216_consen 215 EVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPT-----LRKLRPEDMFET 262 (383)
T ss_dssp -EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-S-----EEE--GGGHHHH
T ss_pred ceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhH-----hhhCChhhhhhh
Confidence 788886533335555545788999999999998543 445555554443
No 312
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=52.92 E-value=19 Score=26.31 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=23.2
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 88 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~ 88 (218)
+..|+.+.|..|+.....|++- ++.|-.+|+-+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehhc
Confidence 4568899999999887666543 45566666543
No 313
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=52.86 E-value=20 Score=26.10 Aligned_cols=32 Identities=13% Similarity=0.239 Sum_probs=24.0
Q ss_pred EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC
Q 027830 52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 88 (218)
Q Consensus 52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~ 88 (218)
..|+.+.|..|++....|++- ++.+..+|+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~ 33 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLK 33 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccC
Confidence 468999999999988777653 46666666644
No 314
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=51.66 E-value=85 Score=24.98 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=47.2
Q ss_pred CCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc-HHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHH
Q 027830 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-KSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIK 125 (218)
Q Consensus 47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~-~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~ 125 (218)
+...+..|+.++|+.|++..=.+.+..- ++.+..||.... +++.+..-...+|++. .+|. ++ ....
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~--~l------~ES~ 73 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEKGV---SVEIEQVEKDNLPQDLIDLNPYQSVPTLV--DREL--TL------YESR 73 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHCCC---CCEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCE--Ee------eCHH
Confidence 3344556667889999998866665432 256666775433 3455544556899996 3442 22 2234
Q ss_pred HHHHHHHhhCCC
Q 027830 126 KFKDALAKHTPD 137 (218)
Q Consensus 126 ~l~~~l~~~~~~ 137 (218)
.|..+|.+..+.
T Consensus 74 AIl~YL~~~~~~ 85 (211)
T PRK09481 74 IIMEYLDERFPH 85 (211)
T ss_pred HHHHHHHHhCCC
Confidence 577777776643
No 315
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=51.61 E-value=23 Score=24.24 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=22.1
Q ss_pred cCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830 100 VLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 100 ~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
.-|++++|+.....+........+.+++.+||.+..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 468999997432233445557899999999998764
No 316
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=50.80 E-value=20 Score=28.80 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=23.7
Q ss_pred HHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHH
Q 027830 91 SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL 131 (218)
Q Consensus 91 ~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l 131 (218)
.-+.+.||.++||+++=.++ +....|. |.--.+.+.++|
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~-~~~e~fw-G~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDK-GKTEMFF-GSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCC-CCcccee-cCCcHHHHHHHh
Confidence 44567899999999884321 1122344 665566666554
No 317
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=50.36 E-value=23 Score=25.63 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=23.0
Q ss_pred EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC
Q 027830 52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 88 (218)
Q Consensus 52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~ 88 (218)
..|+.+.|..|++....|++- ++.|..+|+-+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~ 33 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYLK 33 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccc
Confidence 468999999999987666543 45566666643
No 318
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=48.84 E-value=20 Score=29.43 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=28.0
Q ss_pred cHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhh
Q 027830 89 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134 (218)
Q Consensus 89 ~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~ 134 (218)
+..++..+||.++||+++- ++ .+. |..+.++|...|...
T Consensus 204 ~~~~a~~~gv~gTPt~~v~-~~-----~~~-g~~~~~~l~~~i~~~ 242 (244)
T COG1651 204 NYKLAQQLGVNGTPTFIVN-GK-----LVP-GLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHHhcCCCcCCeEEEC-Ce-----eec-CCCCHHHHHHHHHHh
Confidence 4567788999999999765 22 222 566688888888764
No 319
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=48.52 E-value=72 Score=20.54 Aligned_cols=50 Identities=6% Similarity=-0.034 Sum_probs=30.1
Q ss_pred EEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc-HHHHHHCCC-CcCCEEE
Q 027830 53 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-KSMCYSLNV-HVLPFFR 105 (218)
Q Consensus 53 ~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~-~~l~~~~~I-~~~Pti~ 105 (218)
.|+.+.|+.|.+.+-.+.+..-. +....+|.... +.+.+.... ..+|++.
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~---~~~~~~~~~~~~~~~~~~~p~~~~vP~l~ 54 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP---YEYVEEDLGNKSELLLASNPVHKKIPVLL 54 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC---CEEEEeCcccCCHHHHHhCCCCCCCCEEE
Confidence 46678899999988766655322 44555554432 333333333 5899885
No 320
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=47.84 E-value=1.6e+02 Score=25.86 Aligned_cols=93 Identities=8% Similarity=0.068 Sum_probs=49.0
Q ss_pred EEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHH-CCCCcCCEEEEE
Q 027830 30 LELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYS-LNVHVLPFFRFY 107 (218)
Q Consensus 30 ~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~-~~I~~~Pti~l~ 107 (218)
..|++.+.....+. ..+++.+|+|.+.-- |.++...+.-.. +.+.+.- ....+++-. -.....|.+.+|
T Consensus 137 ~pi~enQ~~fehlq-~Rhq~ffVf~Gtge~-------PL~d~fidAASe~~~~a~Ff-SaseeVaPe~~~~kempaV~VF 207 (468)
T KOG4277|consen 137 EPINENQIEFEHLQ-ARHQPFFVFFGTGEG-------PLFDAFIDAASEKFSVARFF-SASEEVAPEENDAKEMPAVAVF 207 (468)
T ss_pred eecChhHHHHHHHh-hccCceEEEEeCCCC-------cHHHHHHHHhhhheeeeeee-ccccccCCcccchhhccceEEE
Confidence 33444333334443 478899999886553 333333322211 2222221 111112222 234578999999
Q ss_pred eCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830 108 RGAHGRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 108 ~~g~~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
++.. ...+ .+.+.++|.+||.+--
T Consensus 208 KDet--f~i~--de~dd~dLseWinRER 231 (468)
T KOG4277|consen 208 KDET--FEIE--DEGDDEDLSEWINRER 231 (468)
T ss_pred ccce--eEEE--ecCchhHHHHHHhHhh
Confidence 8875 2222 3567889999997643
No 321
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=47.74 E-value=96 Score=21.75 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=41.3
Q ss_pred CCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH-HHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhh
Q 027830 56 SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134 (218)
Q Consensus 56 a~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~-~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~ 134 (218)
..+|+.|++.+=.+.+..- .+.+..||....+ .+.+..-...+|++. .+|. + -.+...|.++|++.
T Consensus 19 ~g~cpf~~rvrl~L~eKgi---~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~--~------i~eS~~I~eYLde~ 85 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGV---VFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGE--V------KTDNNKIEEFLEET 85 (91)
T ss_pred CCCChhHHHHHHHHHHCCC---ceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCE--E------ecCHHHHHHHHHHH
Confidence 4689999998766655411 2456677765544 444444556899664 3442 2 23456677888776
Q ss_pred CC
Q 027830 135 TP 136 (218)
Q Consensus 135 ~~ 136 (218)
..
T Consensus 86 ~~ 87 (91)
T cd03061 86 LC 87 (91)
T ss_pred cc
Confidence 54
No 322
>PRK10387 glutaredoxin 2; Provisional
Probab=47.67 E-value=87 Score=24.62 Aligned_cols=73 Identities=5% Similarity=0.043 Sum_probs=42.0
Q ss_pred EEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHH
Q 027830 53 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALA 132 (218)
Q Consensus 53 ~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~ 132 (218)
.++.+.|++|.+.+-.++...-. +.+..++...+...........+|+++. .+|. + -.+...|..+|.
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi~---y~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~--~------l~eS~aI~~yL~ 70 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNIP---VELIVLANDDEATPIRMIGQKQVPILQK-DDGS--Y------MPESLDIVHYID 70 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCCC---eEEEEcCCCchhhHHHhcCCcccceEEe-cCCe--E------ecCHHHHHHHHH
Confidence 35678899999988766555322 3444454433322223333457898853 2442 2 233567888888
Q ss_pred hhCCC
Q 027830 133 KHTPD 137 (218)
Q Consensus 133 ~~~~~ 137 (218)
+..+.
T Consensus 71 ~~~~~ 75 (210)
T PRK10387 71 ELDGK 75 (210)
T ss_pred HhCCC
Confidence 77653
No 323
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=46.62 E-value=51 Score=23.99 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=44.5
Q ss_pred cCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC--------cHHHHHHCCCCcCCEEEEEeC
Q 027830 45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE--------HKSMCYSLNVHVLPFFRFYRG 109 (218)
Q Consensus 45 ~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~--------~~~l~~~~~I~~~Pti~l~~~ 109 (218)
..+|++||.=.|+-|+.-. ....|++|.++|. ++.++..-|.. +.++..-..-+.-+++-+|..
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~~~~~~~F~vf~k 92 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCKEKFGVTFPVFEK 92 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHCHCHT-SSEEBS-
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHHhccCCcccceEE
Confidence 4689999999999999998 6679999999886 48888887753 233333333334456666643
No 324
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=45.87 E-value=63 Score=27.09 Aligned_cols=82 Identities=20% Similarity=0.232 Sum_probs=57.4
Q ss_pred CeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEE--EEEeCc----------------CcHHHHHHCCCCcCCEEEEEeC
Q 027830 48 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQF--LQVNYE----------------EHKSMCYSLNVHVLPFFRFYRG 109 (218)
Q Consensus 48 k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~--~~Vd~~----------------~~~~l~~~~~I~~~Pti~l~~~ 109 (218)
.-|+=.|.+..|..|--....|.+++++- +|.- +.||+. ....+.+.|+-++++|=-.+-+
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~~-~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvn 120 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADDP-GVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVN 120 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccCC-CEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheee
Confidence 45666788899999999898999888763 3322 245542 2345677889999999877778
Q ss_pred CCeeEEEEecCccCHHHHHHHHHhhC
Q 027830 110 AHGRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 110 g~~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
|. ... ...+..+|.+.|...-
T Consensus 121 Gr---~~~--~Gad~~~i~~~i~a~~ 141 (261)
T COG5429 121 GR---VHA--NGADPGAIEDAIAAMA 141 (261)
T ss_pred ch---hhh--cCCCHHHHHHHHHHhh
Confidence 75 222 3677788888876554
No 325
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=43.08 E-value=61 Score=20.78 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=31.7
Q ss_pred EEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC-cHHHHHHCCCCcCCEEEE
Q 027830 53 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPFFRF 106 (218)
Q Consensus 53 ~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~-~~~l~~~~~I~~~Pti~l 106 (218)
.|+.+.|+.|.+.+-.+....... .+..+.+|... .+++.+......+|++..
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 56 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSDDESLLAVNPLGKIPALVL 56 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccCChHHHHhCCCCCCCEEEE
Confidence 467888999998776665521111 24555565432 345555555678998753
No 326
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=41.19 E-value=35 Score=25.14 Aligned_cols=22 Identities=14% Similarity=0.395 Sum_probs=18.2
Q ss_pred EEEEECCCChhHHhHHHHHHHH
Q 027830 51 VVDFFSPGCGGCKALHPKICQL 72 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~l 72 (218)
+..|+.|.|..|+.....|++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5668899999999988877654
No 327
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=40.53 E-value=1.5e+02 Score=22.06 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=35.3
Q ss_pred HHHHHHHHHCCCcEEEEEeCcCcH----------HHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830 67 PKICQLAEMNPDVQFLQVNYEEHK----------SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 67 p~l~~la~~~~~v~~~~Vd~~~~~----------~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
..++.|.+ .++.+.+-|...++ ++.+.-|...+|-++ -||+ ++... ...+.++|.+|+.-..
T Consensus 31 ~~~~~Lk~--~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitl--VdGe--iv~~G-~YPt~eEl~~~~~i~~ 102 (123)
T PF06953_consen 31 ADLDWLKE--QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITL--VDGE--IVKTG-RYPTNEELAEWLGISF 102 (123)
T ss_dssp HHHHHHHH--TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEE--ETTE--EEEES-S---HHHHHHHHT--G
T ss_pred HHHHHHHh--CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEE--ECCE--EEEec-CCCCHHHHHHHhCCCc
Confidence 34444433 36999999998654 334556888999775 4775 54444 5788999999985443
No 328
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=40.41 E-value=98 Score=19.78 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=24.2
Q ss_pred CCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830 56 SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 56 a~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~ 105 (218)
.+||+.|.+..-.+... ++.|-.++++... .-.-..+|++.
T Consensus 13 ~s~sp~~~~v~~~L~~~-----~i~~~~~~~~~~~----~~p~g~vP~l~ 53 (72)
T cd03054 13 PSLSPECLKVETYLRMA-----GIPYEVVFSSNPW----RSPTGKLPFLE 53 (72)
T ss_pred CCCCHHHHHHHHHHHhC-----CCceEEEecCCcc----cCCCcccCEEE
Confidence 46999999988777553 4444444443211 11234789885
No 329
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=39.76 E-value=1.4e+02 Score=26.23 Aligned_cols=126 Identities=12% Similarity=0.065 Sum_probs=72.5
Q ss_pred cCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEE-EE-eCcCcHHHHHHCCCCcCCE
Q 027830 27 RLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFL-QV-NYEEHKSMCYSLNVHVLPF 103 (218)
Q Consensus 27 ~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~-~V-d~~~~~~l~~~~~I~~~Pt 103 (218)
..+.+..+.+++...... +.+.++.+|-....+.-..++ +++..+.+ ..|. .+ |... ...-.+.+
T Consensus 108 ~~i~Ef~sl~~l~n~~~p-~K~~vIgyF~~kdspey~~~~----kva~~lr~dc~f~V~~gD~~~------~~~~~~~~- 175 (375)
T KOG0912|consen 108 DPINEFESLDQLQNLDIP-SKRTVIGYFPSKDSPEYDNLR----KVASLLRDDCVFLVGFGDLLK------PHEPPGKN- 175 (375)
T ss_pred cHHHHHHhHHHHHhhhcc-ccceEEEEeccCCCchHHHHH----HHHHHHhhccEEEeecccccc------CCCCCCCc-
Confidence 335666666677666532 566778888767666655444 44444433 2222 22 2211 11112233
Q ss_pred EEEEeCCCeeE-EEEecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHhCCC--ceeeeCCCC
Q 027830 104 FRFYRGAHGRV-CSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKD--LSFNYTPKP 169 (218)
Q Consensus 104 i~l~~~g~~~~-~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~v~~y~p~~ 169 (218)
+++|+.+.... ..|.+.-.+.+.+..||.+.. .+-|+.++-++.+.+..+.- +.+|+.+.-
T Consensus 176 ~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKc-----vpLVREiTFeN~EELtEEGlPflILf~~kdD 239 (375)
T KOG0912|consen 176 ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKC-----VPLVREITFENAEELTEEGLPFLILFRKKDD 239 (375)
T ss_pred eEEeCCCcCCcCcccccccccHHHHHHHHHhcc-----hhhhhhhhhccHHHHhhcCCceEEEEecCCc
Confidence 44554443111 136644567999999998877 34588889998888887765 555666643
No 330
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.10 E-value=16 Score=31.52 Aligned_cols=30 Identities=17% Similarity=0.125 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHhCCC-----ceeeeCCCCCCCC
Q 027830 144 TKGLEEKELLALAANKD-----LSFNYTPKPHPMP 173 (218)
Q Consensus 144 ~~~l~~~~l~~~~~~~~-----~v~~y~p~~~~~p 173 (218)
+...++.+|.+.+..+. +|.|++||+.+|.
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~ 59 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCK 59 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHH
Confidence 66777788877555433 8889999999973
No 331
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=38.80 E-value=82 Score=20.93 Aligned_cols=67 Identities=7% Similarity=-0.008 Sum_probs=36.6
Q ss_pred CCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHC---CCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHH
Q 027830 56 SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL---NVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALA 132 (218)
Q Consensus 56 a~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~---~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~ 132 (218)
.+||+.|.+.+-.+....-. ..+..++..........+ ....+|++.. .+|. .+ .....|.++|.
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~---~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~--~l------~eS~aI~~yL~ 80 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLE---YKTVPVEFPDIPPILGELTSGGFYTVPVIVD-GSGE--VI------GDSFAIAEYLE 80 (84)
T ss_pred CCcCChhHHHHHHHHhCCCC---CeEEEecCCCcccccccccCCCCceeCeEEE-CCCC--EE------eCHHHHHHHHH
Confidence 47899999988777654333 345555544322222222 2457898842 2243 21 24456777776
Q ss_pred hh
Q 027830 133 KH 134 (218)
Q Consensus 133 ~~ 134 (218)
+.
T Consensus 81 ~~ 82 (84)
T cd03038 81 EA 82 (84)
T ss_pred Hh
Confidence 54
No 332
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=38.64 E-value=65 Score=22.99 Aligned_cols=31 Identities=13% Similarity=0.487 Sum_probs=20.7
Q ss_pred EECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc
Q 027830 54 FFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 89 (218)
Q Consensus 54 Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~ 89 (218)
|+.+.|..|+.....|++- ++.+-.+|+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~-----gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN-----GIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT-----T--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHc-----CCCeEeehhhhC
Confidence 6789999999988877652 567777887654
No 333
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=38.31 E-value=94 Score=26.45 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=56.3
Q ss_pred EEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCc---CcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHH
Q 027830 50 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE---EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKK 126 (218)
Q Consensus 50 vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~---~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~ 126 (218)
-++...|-.-+.+--.+..+.+++.+. ..++.|+-+ .-+.+...+....-..|+|.+| ..|..|....+.
T Consensus 87 nVLLwGaRGtGKSSLVKA~~~e~~~~g--lrLVEV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDD-----LSFe~gd~~yK~ 159 (287)
T COG2607 87 NVLLWGARGTGKSSLVKALLNEYADEG--LRLVEVDKEDLATLPDLVELLRARPEKFILFCDD-----LSFEEGDDAYKA 159 (287)
T ss_pred ceEEecCCCCChHHHHHHHHHHHHhcC--CeEEEEcHHHHhhHHHHHHHHhcCCceEEEEecC-----CCCCCCchHHHH
Confidence 466789999999999999999888875 556666654 4556666666566666666544 344547777888
Q ss_pred HHHHHHhhCC
Q 027830 127 FKDALAKHTP 136 (218)
Q Consensus 127 l~~~l~~~~~ 136 (218)
|+..|+.-+.
T Consensus 160 LKs~LeG~ve 169 (287)
T COG2607 160 LKSALEGGVE 169 (287)
T ss_pred HHHHhcCCcc
Confidence 8888876664
No 334
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=36.83 E-value=24 Score=28.37 Aligned_cols=36 Identities=6% Similarity=-0.022 Sum_probs=25.1
Q ss_pred CCCCCCCCCHHHHHHHHhCC----C-ceeeeCCCCCCCCCC
Q 027830 140 GLGPTKGLEEKELLALAANK----D-LSFNYTPKPHPMPAP 175 (218)
Q Consensus 140 ~~~~~~~l~~~~l~~~~~~~----~-~v~~y~p~~~~~p~~ 175 (218)
..|.+..++..+|...+.+. . +|.||++|+..|-.+
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m 120 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLL 120 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHH
Confidence 45667777777777654332 2 677999999998654
No 335
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=35.51 E-value=36 Score=23.67 Aligned_cols=34 Identities=18% Similarity=0.439 Sum_probs=22.9
Q ss_pred EECCC---ChhH--HhHHHHHHHH---HHHCCC--cEEEEEeCc
Q 027830 54 FFSPG---CGGC--KALHPKICQL---AEMNPD--VQFLQVNYE 87 (218)
Q Consensus 54 Fya~w---C~~C--~~~~p~l~~l---a~~~~~--v~~~~Vd~~ 87 (218)
||.-| |..| +....++.+| .++|++ |+++.+|-.
T Consensus 28 ywt~w~lp~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~~ 71 (84)
T cd00307 28 FRTSSWQSCGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDPK 71 (84)
T ss_pred cHhhhcCCCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 45555 6777 5556666555 457888 889888854
No 336
>PRK10853 putative reductase; Provisional
Probab=34.24 E-value=56 Score=23.99 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=24.1
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 88 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~ 88 (218)
+..|+-+.|..|+.....|++- ++.+-.+|+-+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~~k 34 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-----GIDYRFHDYRV 34 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-----CCCcEEeehcc
Confidence 4568899999999988777653 46666666543
No 337
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=33.89 E-value=1.7e+02 Score=23.27 Aligned_cols=71 Identities=7% Similarity=0.027 Sum_probs=38.8
Q ss_pred EECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHh
Q 027830 54 FFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK 133 (218)
Q Consensus 54 Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~ 133 (218)
++...|+.|++.+-.+....-. +..+.++...+....+......+|++.. .+|. + -.....|.++|.+
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~---~e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~--~------l~es~~I~~yL~~ 70 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIP---VEKHVLLNDDEETPIRMIGAKQVPILQK-DDGR--A------MPESLDIVAYFDK 70 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCC---eEEEECCCCcchhHHHhcCCCCcceEEe-eCCe--E------eccHHHHHHHHHH
Confidence 5567799999877666554322 2333333333322333333567897743 3442 2 1234667888887
Q ss_pred hCC
Q 027830 134 HTP 136 (218)
Q Consensus 134 ~~~ 136 (218)
..+
T Consensus 71 ~~~ 73 (209)
T TIGR02182 71 LDG 73 (209)
T ss_pred hCC
Confidence 764
No 338
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=33.81 E-value=2.5e+02 Score=22.57 Aligned_cols=90 Identities=10% Similarity=-0.016 Sum_probs=48.2
Q ss_pred cCCCeEEEEEE-CCCChhHHhHHHHHHHHHHHCCC----cEEEEEeC--------------------------cCcHHHH
Q 027830 45 AGDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPD----VQFLQVNY--------------------------EEHKSMC 93 (218)
Q Consensus 45 ~~~k~vlV~Fy-a~wC~~C~~~~p~l~~la~~~~~----v~~~~Vd~--------------------------~~~~~l~ 93 (218)
..++.|++.|| -++--.|-..--.|...+.++.+ |..+.+|. |.+..+|
T Consensus 31 y~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Is 110 (196)
T KOG0852|consen 31 YKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEIS 110 (196)
T ss_pred hcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhH
Confidence 35789999998 55544553333344444444332 44444442 3467899
Q ss_pred HHCCC----CcCCE--EEEE-eCCCeeEE--EEecCccCHHHHHHHHHhh
Q 027830 94 YSLNV----HVLPF--FRFY-RGAHGRVC--SFSCTNATIKKFKDALAKH 134 (218)
Q Consensus 94 ~~~~I----~~~Pt--i~l~-~~g~~~~~--~~~~g~~~~~~l~~~l~~~ 134 (218)
+.||+ .|.+. +.++ .+|..|-+ ....-+++.++....+...
T Consensus 111 rdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAf 160 (196)
T KOG0852|consen 111 RDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAF 160 (196)
T ss_pred HhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHH
Confidence 99997 35554 2222 33332221 1222477788777766543
No 339
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=33.08 E-value=2.8e+02 Score=22.82 Aligned_cols=66 Identities=18% Similarity=0.127 Sum_probs=42.6
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHH-CCCCcCCEEEEEeCCC
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS-LNVHVLPFFRFYRGAH 111 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~-~~I~~~Pti~l~~~g~ 111 (218)
.++..+..=||++++.-.+|...-.++.++--||.++.|.....++.... -|+..+|...+...|.
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vethgR~et~~l~~gLe~iP~~~i~y~g~ 69 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETHGRPETEALLEGLEVIPRKKIEYRGR 69 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---TT-HHHHHHHCTS-B---EEEEETTE
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHcCCCcCCCeeEeeCCE
Confidence 46777777789999999999988888888877799999998766665544 5788889888777764
No 340
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=32.53 E-value=1.4e+02 Score=19.26 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=32.4
Q ss_pred EEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCc---CcHHHHHHCCCCcCCEEEE
Q 027830 53 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE---EHKSMCYSLNVHVLPFFRF 106 (218)
Q Consensus 53 ~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~---~~~~l~~~~~I~~~Pti~l 106 (218)
.|+.+.|+.|.+.+-.+++..- .+.+..+|.. ..+++.+..-...+|++..
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~ 56 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGL---DVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG 56 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCC---ceEEEecccccccCCHHHHHhCCCCCCCEEEc
Confidence 4677788889887766664422 2555666654 2355555555678999964
No 341
>KOG4079 consensus Putative mitochondrial ribosomal protein mRpS25 [Translation, ribosomal structure and biogenesis]
Probab=31.03 E-value=55 Score=25.03 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=40.1
Q ss_pred CcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHhCCCcee
Q 027830 99 HVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSF 163 (218)
Q Consensus 99 ~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~v~ 163 (218)
.-.|..+.|-++ |+-+-+...+++.++|++.|.+.++.. -..+..++++..++..+-.|
T Consensus 72 tpsPF~R~Yldd-Gr~vL~Dld~~~r~eI~~hl~K~lGKt-----ee~lr~Ee~ek~~k~nPAnF 130 (169)
T KOG4079|consen 72 TPSPFARAYLDD-GREVLFDLDGMKREEIEKHLAKTLGKT-----EEVLRREELEKIAKLNPANF 130 (169)
T ss_pred CCChHHHheecC-cceEEEEcccccHHHHHHHHHHHhCcc-----HHHHhHHHHHHHhhcChhhh
Confidence 445677777554 345555557899999999999999754 23446677777776665444
No 342
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.44 E-value=63 Score=23.39 Aligned_cols=23 Identities=4% Similarity=-0.006 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCCceeeeCCCCCC
Q 027830 149 EKELLALAANKDLSFNYTPKPHP 171 (218)
Q Consensus 149 ~~~l~~~~~~~~~v~~y~p~~~~ 171 (218)
.+.+++.++++++|+|+++.|+.
T Consensus 5 ~~~I~~~i~~n~VvLFMKGtp~~ 27 (105)
T COG0278 5 LDRIQKQIKENPVVLFMKGTPEF 27 (105)
T ss_pred HHHHHHHhhcCceEEEecCCCCC
Confidence 34577888999999999999998
No 343
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=30.34 E-value=2.3e+02 Score=21.30 Aligned_cols=31 Identities=29% Similarity=0.618 Sum_probs=22.3
Q ss_pred EEEEC--CCChhHHhHHHHHHHHHHHCCCcEEEEEe
Q 027830 52 VDFFS--PGCGGCKALHPKICQLAEMNPDVQFLQVN 85 (218)
Q Consensus 52 V~Fya--~wC~~C~~~~p~l~~la~~~~~v~~~~Vd 85 (218)
|..|+ +-|..|.. +++++...||++.+..++
T Consensus 99 i~l~te~~pC~SC~~---vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 99 IDLFTELPPCESCSN---VIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred EEEEecCCcChhHHH---HHHHHHHHCCCcEEEEec
Confidence 44454 45888875 888889999997765543
No 344
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=30.30 E-value=87 Score=23.34 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=22.9
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCc
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE 87 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~ 87 (218)
+..|+-+.|..|+.....|++- ++.+-.+|+-
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~-----gi~~~~~d~~ 34 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS-----GHDVEVQDIL 34 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEecc
Confidence 5568889999999988777654 4555555543
No 345
>PRK10026 arsenate reductase; Provisional
Probab=29.82 E-value=84 Score=24.01 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=23.2
Q ss_pred EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCc
Q 027830 51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE 87 (218)
Q Consensus 51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~ 87 (218)
+..|+.+.|..|+.....|++- ++.|-.+|+-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~ 35 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYL 35 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeee
Confidence 5578899999999988777654 4555555553
No 346
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=29.73 E-value=2.8e+02 Score=21.78 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=30.6
Q ss_pred hcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCc
Q 027830 44 HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE 87 (218)
Q Consensus 44 ~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~ 87 (218)
...+|++||.=.|+-|+.--+. .-|+.|.++|.+ +.++..-|.
T Consensus 22 ~~~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~Gf~VLgFPcN 66 (162)
T COG0386 22 DYKGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDKGFEVLGFPCN 66 (162)
T ss_pred HhCCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhCCcEEEecccc
Confidence 3579999999999999987643 356666666654 666665553
No 347
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=29.13 E-value=2.1e+02 Score=20.24 Aligned_cols=69 Identities=14% Similarity=0.293 Sum_probs=36.8
Q ss_pred CChhHHhH------HHHHH-HHHHHCCC--cEEEEEeCcCcH------HHHHHC--CCCcCCEEEEEeCCCeeEEEEecC
Q 027830 58 GCGGCKAL------HPKIC-QLAEMNPD--VQFLQVNYEEHK------SMCYSL--NVHVLPFFRFYRGAHGRVCSFSCT 120 (218)
Q Consensus 58 wC~~C~~~------~p~l~-~la~~~~~--v~~~~Vd~~~~~------~l~~~~--~I~~~Pti~l~~~g~~~~~~~~~g 120 (218)
-|..|..+ ...|+ .|.++|++ +.|-.||+...+ +++++. .--.||-+++ +|+ ++.- |
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i--~~e--iV~E--G 81 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI--NDE--IVAE--G 81 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE--TTE--EEEE--S
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE--CCE--EEec--C
Confidence 48878543 23343 35678987 888899996532 334332 2235786653 554 4432 6
Q ss_pred ccCHHHHHHHHH
Q 027830 121 NATIKKFKDALA 132 (218)
Q Consensus 121 ~~~~~~l~~~l~ 132 (218)
+...+.+..+|+
T Consensus 82 np~LK~I~~~~e 93 (93)
T PF07315_consen 82 NPQLKDIYEEME 93 (93)
T ss_dssp S--HHHHHHHHH
T ss_pred CccHHHHHHhhC
Confidence 777888877764
No 348
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=29.01 E-value=2.6e+02 Score=22.59 Aligned_cols=57 Identities=16% Similarity=0.020 Sum_probs=34.9
Q ss_pred cEEEEEeCcCcHHHHHHCCCCc---------------CCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830 79 VQFLQVNYEEHKSMCYSLNVHV---------------LPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP 136 (218)
Q Consensus 79 v~~~~Vd~~~~~~l~~~~~I~~---------------~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~ 136 (218)
+....-+.+...++++.|+|.. .-.++++. .+|++.....+....+.+.+.|++.+.
T Consensus 134 ~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid-~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 134 WIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLID-ADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred eeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEEC-CCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 5555555555666677766652 33444553 335566655566668899888887763
No 349
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=28.99 E-value=70 Score=28.29 Aligned_cols=57 Identities=11% Similarity=0.076 Sum_probs=40.9
Q ss_pred cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830 79 VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 135 (218)
Q Consensus 79 v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~ 135 (218)
+-.+..|......+..-|.+..+|.+.+++.-.|+-+....|....++|..-+++.+
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi 189 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFI 189 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHH
Confidence 555567777777888899999999888886554444444436666777777777666
No 350
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=28.49 E-value=99 Score=22.74 Aligned_cols=52 Identities=15% Similarity=0.386 Sum_probs=33.3
Q ss_pred CChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH-HHHHHCC--CCcCCEEEEEeC
Q 027830 58 GCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-SMCYSLN--VHVLPFFRFYRG 109 (218)
Q Consensus 58 wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~-~l~~~~~--I~~~Pti~l~~~ 109 (218)
.|++|..+.-.|.-.-..-..+.+.+|+...-. .+....| =++.|++++=.+
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~ 77 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADG 77 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCC
Confidence 399998877666543332234899999987533 3444444 368999987643
No 351
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=27.50 E-value=1.4e+02 Score=18.47 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=22.7
Q ss_pred EECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc
Q 027830 54 FFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 89 (218)
Q Consensus 54 Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~ 89 (218)
...=+|..|.. .+++.....+++.-+.+|...+
T Consensus 4 v~~m~C~~C~~---~v~~~l~~~~GV~~v~vd~~~~ 36 (62)
T PF00403_consen 4 VPGMTCEGCAK---KVEKALSKLPGVKSVKVDLETK 36 (62)
T ss_dssp EESTTSHHHHH---HHHHHHHTSTTEEEEEEETTTT
T ss_pred ECCcccHHHHH---HHHHHHhcCCCCcEEEEECCCC
Confidence 34457999965 4555556678888888887654
No 352
>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification]
Probab=27.09 E-value=1.8e+02 Score=25.52 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=25.3
Q ss_pred CCcCCEEEEEeCCCeeEEEEec-CccCHHHHHHHHHhhC
Q 027830 98 VHVLPFFRFYRGAHGRVCSFSC-TNATIKKFKDALAKHT 135 (218)
Q Consensus 98 I~~~Pti~l~~~g~~~~~~~~~-g~~~~~~l~~~l~~~~ 135 (218)
...-.-+++|++..+.+..+.. ...+...+...+.+.+
T Consensus 92 ~~~~g~fl~~rn~s~~i~glWf~d~~~~~ri~~L~~~ll 130 (335)
T KOG2868|consen 92 FQLQGPFLLYRNESGSIYGLWFYDKNDCQRIATLLKKLL 130 (335)
T ss_pred eeecCcceeeeccccceeEEEecCcchHHHHHHHHHHHH
Confidence 4456677777776666666543 5666777777777766
No 353
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=26.90 E-value=2e+02 Score=22.43 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=44.2
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCc---CcHHHHHHCCCCcCCEEEEEe
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE---EHKSMCYSLNVHVLPFFRFYR 108 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~---~~~~l~~~~~I~~~Pti~l~~ 108 (218)
+.+.++..|=+=.-+-|......|.+.+.++.++.+..|..| .....|...||..+=++--|+
T Consensus 44 gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~DLPFAq~RfC~aeGi~nv~~lSd~r 109 (158)
T COG2077 44 GKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMDLPFAQKRFCGAEGIENVITLSDFR 109 (158)
T ss_pred CceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCCChhHHhhhhhhcCcccceEhhhhh
Confidence 344555566677889999999999999999999777777765 345667666766544443333
No 354
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=26.66 E-value=4e+02 Score=23.21 Aligned_cols=85 Identities=13% Similarity=0.154 Sum_probs=50.2
Q ss_pred CCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH--HHHHHCCCCcCCEEEE------E-------eC--
Q 027830 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK--SMCYSLNVHVLPFFRF------Y-------RG-- 109 (218)
Q Consensus 47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~--~l~~~~~I~~~Pti~l------~-------~~-- 109 (218)
...+||.+. |+.|++....|+.+......+.++-||++..- ..+..+.-..+|.+.+ | .+
T Consensus 76 ~~~~lIELG---sG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~ 152 (319)
T TIGR03439 76 SGSMLVELG---SGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPE 152 (319)
T ss_pred CCCEEEEEC---CCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccc
Confidence 344788775 67788888888888755445899999997532 2222232234555443 1 11
Q ss_pred --CCeeEEEE---ecCccCHHHHHHHHHhh
Q 027830 110 --AHGRVCSF---SCTNATIKKFKDALAKH 134 (218)
Q Consensus 110 --g~~~~~~~---~~g~~~~~~l~~~l~~~ 134 (218)
+..+++-+ +.|+.+.++...||.+.
T Consensus 153 ~~~~~r~~~flGSsiGNf~~~ea~~fL~~~ 182 (319)
T TIGR03439 153 NRSRPTTILWLGSSIGNFSRPEAAAFLAGF 182 (319)
T ss_pred ccCCccEEEEeCccccCCCHHHHHHHHHHH
Confidence 11123322 34788888888888664
No 355
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=25.98 E-value=2.7e+02 Score=23.39 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=31.9
Q ss_pred cCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhh
Q 027830 87 EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134 (218)
Q Consensus 87 ~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~ 134 (218)
+-.++++++++|..+|.-+.+. |+ ..... -..+.++|.+.+.+.
T Consensus 10 dl~~~~~~~~~I~vvPl~I~~~-~~--~y~D~-~~i~~~~~y~~~~~~ 53 (275)
T TIGR00762 10 DLPPELIEEYGITVVPLTVIID-GK--TYRDG-VDITPEEFYEKLKES 53 (275)
T ss_pred CCCHHHHHHcCCEEEEEEEEEC-CE--EeecC-CCCCHHHHHHHHHhc
Confidence 3457788999999999998884 43 22222 357899999998764
No 356
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=25.85 E-value=2e+02 Score=22.82 Aligned_cols=113 Identities=15% Similarity=0.228 Sum_probs=70.3
Q ss_pred cCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCcC--------cHHHHHHCCCCcCCEEEEEeCCCeeE
Q 027830 45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE--------HKSMCYSLNVHVLPFFRFYRGAHGRV 114 (218)
Q Consensus 45 ~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~~--------~~~l~~~~~I~~~Pti~l~~~g~~~~ 114 (218)
-.++++||.=-|+.|+.-..--..|.+|.++|.+ +.++..-|.. +.++..-...+.=..+-+|..-
T Consensus 32 yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~~f~if~Ki---- 107 (171)
T KOG1651|consen 32 YRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRYGAEFPIFQKI---- 107 (171)
T ss_pred hCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhccCCCCccEeEE----
Confidence 4699999999999999998777799999998864 8888877742 3443333222222222445221
Q ss_pred EEEecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHhCCC--ceeeeCCCC
Q 027830 115 CSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKD--LSFNYTPKP 169 (218)
Q Consensus 115 ~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~v~~y~p~~ 169 (218)
. ..+...+-+-+||++..+.. ++... .=+|+.+.-+++ ++.-|.|.-
T Consensus 108 -d--VNG~~~~PlykfLK~~~~~~--lg~~I---kWNF~KFLVd~~G~vv~Ry~ptt 156 (171)
T KOG1651|consen 108 -D--VNGDNADPLYKFLKKVKGGP--LGDDI---KWNFTKFLVDKDGHVVKRFSPTT 156 (171)
T ss_pred -e--cCCCCCchHHHHHhhcCCCc--ccccc---eeeeEEEeECCCCcEEEeeCCCC
Confidence 1 13446777889998877642 22111 113566555555 777777754
No 357
>PRK11752 putative S-transferase; Provisional
Probab=24.50 E-value=2.8e+02 Score=23.08 Aligned_cols=55 Identities=11% Similarity=0.024 Sum_probs=36.4
Q ss_pred EEEECCCChhHHhHHHHHHHH-HHHCCC--cEEEEEeCcC----cHHHHHHCCCCcCCEEEE
Q 027830 52 VDFFSPGCGGCKALHPKICQL-AEMNPD--VQFLQVNYEE----HKSMCYSLNVHVLPFFRF 106 (218)
Q Consensus 52 V~Fya~wC~~C~~~~p~l~~l-a~~~~~--v~~~~Vd~~~----~~~l~~~~~I~~~Pti~l 106 (218)
+.+|..+|+.|++..=.++++ +...++ +.++.||... .+++.+..-...+|+++.
T Consensus 45 ~~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~ 106 (264)
T PRK11752 45 LQLYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLD 106 (264)
T ss_pred eEEecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEe
Confidence 445556799999999888885 333333 5667777643 345555555568999964
No 358
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=24.28 E-value=1.9e+02 Score=22.33 Aligned_cols=42 Identities=21% Similarity=0.202 Sum_probs=34.5
Q ss_pred CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCc
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE 87 (218)
Q Consensus 46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~ 87 (218)
.++-+.+.++++.++.|.-+.-.++.+++.|.+ |.+-.+++.
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 356788999999999999999999999999866 666666554
No 359
>COG3411 Ferredoxin [Energy production and conversion]
Probab=23.87 E-value=1.2e+02 Score=20.00 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=24.7
Q ss_pred cCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830 100 VLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP 136 (218)
Q Consensus 100 ~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~ 136 (218)
.=|++++|.+|- - ++..+.++..+++++|+.
T Consensus 16 ~gPvl~vYpegv----W--Y~~V~p~~a~rIv~~hl~ 46 (64)
T COG3411 16 DGPVLVVYPEGV----W--YTRVDPEDARRIVQSHLL 46 (64)
T ss_pred cCCEEEEecCCe----e--EeccCHHHHHHHHHHHHh
Confidence 459999998873 2 357889999999999984
No 360
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=23.22 E-value=2.1e+02 Score=18.29 Aligned_cols=51 Identities=4% Similarity=-0.115 Sum_probs=33.0
Q ss_pred EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC----cHHHHHHCCCCcCCEEE
Q 027830 52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE----HKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~----~~~l~~~~~I~~~Pti~ 105 (218)
..|+.+.|+.|++..-.+.+..-. +.+..+|... .+.+.+......+|++.
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 56 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKIP---FEECPIDLRKGEQLTPEFKKINPFGKVPAIV 56 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCCC---cEEEEecCCCCCcCCHHHHHhCcCCCCCEEE
Confidence 357778899998887666655333 4555666532 23555556677899986
No 361
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=22.63 E-value=2.1e+02 Score=17.92 Aligned_cols=49 Identities=8% Similarity=-0.012 Sum_probs=26.5
Q ss_pred EECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCc----CcHHHHHHCCCCcCCEEE
Q 027830 54 FFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE----EHKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 54 Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~----~~~~l~~~~~I~~~Pti~ 105 (218)
|+...|+.|.+.+-.+....- .+....+|.. ..+++.+......+|++.
T Consensus 4 ~~~~~~~~~~~~~~~l~~~gi---~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (73)
T cd03042 4 YSYFRSSASYRVRIALNLKGL---DYEYVPVNLLKGEQLSPAYRALNPQGLVPTLV 56 (73)
T ss_pred ecCCCCcchHHHHHHHHHcCC---CCeEEEecCccCCcCChHHHHhCCCCCCCEEE
Confidence 444556666655444444321 2555666652 234555555567899885
No 362
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=21.47 E-value=2.7e+02 Score=19.42 Aligned_cols=17 Identities=12% Similarity=0.214 Sum_probs=12.5
Q ss_pred CcEEEEEeCcCcHHHHH
Q 027830 78 DVQFLQVNYEEHKSMCY 94 (218)
Q Consensus 78 ~v~~~~Vd~~~~~~l~~ 94 (218)
+|.|-.+|++.+++..+
T Consensus 30 ~I~f~eiDI~~d~~~r~ 46 (92)
T cd03030 30 KIEFEEVDISMNEENRQ 46 (92)
T ss_pred CCceEEEecCCCHHHHH
Confidence 58999999987665443
Done!