Query 027830
Match_columns 218
No_of_seqs 201 out of 1836
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 18:21:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027830.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2196-2200//hhsearch_pdb/027830hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3idv_A Protein disulfide-isome 1.0 1 1 156.1 14.9 147 23-175 11-165 (241)
2 3zzx_A Thioredoxin; oxidoreduc 1.0 1 1 153.9 15.6 103 29-134 2-104 (105)
3 3f8u_A Protein disulfide-isome 1.0 1 1 152.1 15.8 136 28-171 2-142 (481)
4 3apo_A DNAJ homolog subfamily 1.0 1 1 149.6 13.2 104 29-137 118-222 (780)
5 3us3_A Calsequestrin-1; calciu 1.0 1 1 149.6 15.1 136 25-171 11-158 (367)
6 2r2j_A Thioredoxin domain-cont 1.0 1 1 149.5 13.7 135 26-170 4-148 (382)
7 3apo_A DNAJ homolog subfamily 1.0 1 1 149.0 13.5 121 46-174 454-580 (780)
8 2b5e_A Protein disulfide-isome 1.0 1 1 148.0 16.8 109 25-138 12-124 (504)
9 1sji_A Calsequestrin 2, calseq 1.0 1 1 147.6 13.8 134 26-171 10-156 (350)
10 3f8u_A Protein disulfide-isome 1.0 1 1 145.5 13.9 132 4-141 331-466 (481)
No 1
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=1.00 E-value=1 Score=156.06 Aligned_cols=147 Identities=14% Similarity=0.233 Sum_probs=121.0
Q ss_pred CCCCCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCCCHHHHHHCCC
Q ss_conf 53345708956963699999813999399999789996677489999999987999----39999967674888987799
Q 027830 23 PLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD----VQFLQVNYEEHKSMCYSLNV 98 (218)
Q Consensus 23 ~~~~~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~----v~~~~Vd~~~~~~l~~~~~I 98 (218)
......++.+++ ++|...+. ++++++|+|||+||++|+.+.|.|+++++.+.+ +.|+.||++.+..++++|+|
T Consensus 11 ~~~~~~v~~l~~-~~~~~~~~--~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v 87 (241)
T 3idv_A 11 VKEENGVLVLND-ANFDNFVA--DKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDV 87 (241)
T ss_dssp CEEETTEEEECT-TTHHHHHT--TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTC
T ss_pred CCCCCCCEEECC-CCHHHHHH--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCC
T ss_conf 566898279053-47899972--699199999899787889764999999999860388469999866477888986598
Q ss_pred CCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHHHCCC--CEEEECCCCCCCCC
Q ss_conf 827789999699823988704853899999999954999999--99988998788999981998--31431799999999
Q 027830 99 HVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCG--LGPTKGLEEKELLALAANKD--LSFNYTPKPHPMPA 174 (218)
Q Consensus 99 ~~~Pti~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~--~v~~y~p~~~~~p~ 174 (218)
.++||+++|++|+ ...+. |.++.+.|.+|+.+....... ...+..++.+++.......+ ++.||++||..|..
T Consensus 88 ~~~Pt~~~~~~g~--~~~~~-g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~ 164 (241)
T 3idv_A 88 SGYPTIKILKKGQ--AVDYE-GSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKK 164 (241)
T ss_dssp CSSSEEEEEETTE--EEECC-SCSCHHHHHHHHHHHHSTTCCCCCCSSEECCTTTHHHHHHHCSEEEEEEECTTCTGGGG
T ss_pred CCCCEEEEECCCC--CCCCC-CCCCHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHHHHCCCCEEEEEEECCCCHHHHH
T ss_conf 8687899971897--34445-75557888988764147653445531011258889976346974999998888878887
Q ss_pred C
Q ss_conf 7
Q 027830 175 P 175 (218)
Q Consensus 175 ~ 175 (218)
+
T Consensus 165 ~ 165 (241)
T 3idv_A 165 L 165 (241)
T ss_dssp T
T ss_pred H
T ss_conf 6
No 2
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=1.00 E-value=1 Score=153.89 Aligned_cols=103 Identities=30% Similarity=0.586 Sum_probs=94.0
Q ss_pred CEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCEEEEEE
Q ss_conf 08956963699999813999399999789996677489999999987999399999676748889877998277899996
Q 027830 29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108 (218)
Q Consensus 29 v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf~ 108 (218)
+.+|.+.++|.+.+.++++++++|+|||+||++|+.+.|.|+++++.++++.|++||++++++++++|+|.++||+++|+
T Consensus 2 V~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~ 81 (105)
T 3zzx_A 2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFLFMK 81 (105)
T ss_dssp CEECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCHHHHHHCCCCEECEEEEEE
T ss_conf 49938899999999866998799999899988864778302212230477489997340189999875997515799998
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 99823988704853899999999954
Q 027830 109 GAHGRVCSFSCTNATIKKFKDALAKH 134 (218)
Q Consensus 109 ~g~~~~~~~~~g~~~~~~l~~~i~~~ 134 (218)
+|+ .+..+. | ++.+.|.++|+++
T Consensus 82 ~G~-~v~~~~-G-~~~~~l~~~i~k~ 104 (105)
T 3zzx_A 82 NGQ-KLDSLS-G-ANYDKLLELVEKN 104 (105)
T ss_dssp TTE-EEEEEE-S-CCHHHHHHHHHHH
T ss_pred CCE-EEEEEE-C-CCHHHHHHHHHHC
T ss_conf 999-999994-9-6999999999965
No 3
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=1.00 E-value=1 Score=152.07 Aligned_cols=136 Identities=21% Similarity=0.328 Sum_probs=111.7
Q ss_pred CCEEECCHHHHHHHHHHC-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCCCCEEE
Q ss_conf 708956963699999813-999399999789996677489999999987999-399999676748889877998277899
Q 027830 28 LALELGRHKDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR 105 (218)
Q Consensus 28 ~v~~i~s~~~~~~~l~~~-~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~ 105 (218)
++.++++ ++|.+.+... .+++++|+|||+||++|+.+.|.|+++++.+.+ +.|+.|||+.+..+|++|+|.++||++
T Consensus 2 ~v~~l~~-~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~ 80 (481)
T 3f8u_A 2 DVLELTD-DNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLK 80 (481)
T ss_dssp CCEEECT-TTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEEE
T ss_pred CEEEECH-HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHCCCCCCCEEE
T ss_conf 6099058-889999972789986999998999978897689999999982186289999899898899864997788799
Q ss_pred EEECCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHHHCCC--CEEEECCCCCC
Q ss_conf 996998239887048538999999999549999999998899-8788999981998--31431799999
Q 027830 106 FYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGL-EEKELLALAANKD--LSFNYTPKPHP 171 (218)
Q Consensus 106 lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~l-~~~~l~~~~~~~~--~v~~y~p~~~~ 171 (218)
+|++|+ .+..|. |.++.+.|.+|+.+.+++. +..+ +.+++..+....+ ++.||..+...
T Consensus 81 ~~~~g~-~~~~~~-G~~~~~~l~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~vv~~~~~~~~~ 142 (481)
T 3f8u_A 81 IFRDGE-EAGAYD-GPRTADGIVSHLKKQAGPA-----SVPLRTEEEFKKFISDKDASIVGFFDDSFSE 142 (481)
T ss_dssp EEETTE-EEEECC-SCSSHHHHHHHHHHHTSCS-----EEEECSHHHHHHHTTSSSCEEEEEESCTTCH
T ss_pred EEECCC-EEEEEC-CCCCHHHHHHHHHHHCCCC-----CEECCCHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 982896-414523-8547999999998653567-----3553788999999722883899997987661
No 4
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=1.00 E-value=1 Score=149.63 Aligned_cols=104 Identities=16% Similarity=0.340 Sum_probs=57.4
Q ss_pred CEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCCCCEEEEE
Q ss_conf 08956963699999813999399999789996677489999999987999-39999967674888987799827789999
Q 027830 29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107 (218)
Q Consensus 29 v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf 107 (218)
+..++ .++|...+ .++++++|+|||+||++|+.+.|.|+++++.+.+ +.|++|||+++..+|++|+|.++||+++|
T Consensus 118 v~~l~-~~~f~~~i--~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 194 (780)
T 3apo_A 118 IITLE-RREFDAAV--NSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIF 194 (780)
T ss_dssp EEECC-HHHHHHHH--TSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC--------CEEEEE
T ss_pred EEEEC-HHHHHHHH--CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHCCCCEEEEEEEE
T ss_conf 16503-67677663--3788589998579874166766999999998148638999968874999997499643269998
Q ss_pred ECCCEEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 699823988704853899999999954999
Q 027830 108 RGAHGRVCSFSCTNATIKKFKDALAKHTPD 137 (218)
Q Consensus 108 ~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~ 137 (218)
++|+ .+..|. |.++.+.|.+|+.+++++
T Consensus 195 ~~g~-~~~~~~-G~~~~~~l~~~l~~~~~~ 222 (780)
T 3apo_A 195 RSGM-AAVKYN-GDRSKESLVAFAMQHVRS 222 (780)
T ss_dssp CTTS-CCEECC-SCSCHHHHHHHHHTTSCC
T ss_pred ECCC-EEEEEC-CCCCHHHHHHHHHHHCHH
T ss_conf 0896-736755-878999999999985413
No 5
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=1.00 E-value=1 Score=149.62 Aligned_cols=136 Identities=13% Similarity=0.123 Sum_probs=109.5
Q ss_pred CCCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH------HHHHHHHHHCC--CCEEEEEECCCCHHHHHHC
Q ss_conf 345708956963699999813999399999789996677489------99999998799--9399999676748889877
Q 027830 25 VHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALH------PKICQLAEMNP--DVQFLQVNYEEHKSMCYSL 96 (218)
Q Consensus 25 ~~~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~------p~~~~la~~~~--~v~~~~Vd~~~~~~l~~~~ 96 (218)
....+++++. ++|.+.+.. +++++|+||||||++|+... |.|++++..+. ++.|++|||++++.+|++|
T Consensus 11 ~~~~v~~lt~-~~f~~~i~~--~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~ 87 (367)
T 3us3_A 11 GVDRVINVNA-KNYKNVFKK--YEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKL 87 (367)
T ss_dssp CCCCCEECCT-TTHHHHHHH--CSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHH
T ss_pred CCCCCEECCH-HHHHHHHHH--CCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHC
T ss_conf 9976088987-889999841--9869999989986068885653001279999999720479469997076549999974
Q ss_pred CCCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHHH-CCC--CEEEECCCCCC
Q ss_conf 998277899996998239887048538999999999549999999998899-8788999981-998--31431799999
Q 027830 97 NVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGL-EEKELLALAA-NKD--LSFNYTPKPHP 171 (218)
Q Consensus 97 ~I~~~Pti~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~l-~~~~l~~~~~-~~~--~v~~y~p~~~~ 171 (218)
+|+++||+++|++|+ ...|. |.++.+.|++||.+++++. +..+ +.+++..+.. ..+ ++.||.++...
T Consensus 88 ~V~~~PTl~~f~~G~--~~~y~-G~~~~~~i~~~i~~~~~~~-----v~~i~~~~~~~~~~~~~~~~~vv~ff~~~~~~ 158 (367)
T 3us3_A 88 GLTEEDSIYVFKEDE--VIEYD-GEFSADTLVEFLLDVLEDP-----VELIEGERELQAFENIEDEIKLIGYFKNKDSE 158 (367)
T ss_dssp TCCSTTEEEEEETTE--EEECC-SCCSHHHHHHHHHHHHSCS-----EEECCSHHHHHHHHHCCSSCEEEEECSCTTCH
T ss_pred CCCCCCEEEEEECCC--EEEEC-CCCCHHHHHHHHHHHCCCC-----CEECCCHHHHHHHHCCCCCCEEEEEECCCCCH
T ss_conf 998686699998995--77757-9778999999999853887-----47727999999986367873899998998866
No 6
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=1.00 E-value=1 Score=149.50 Aligned_cols=135 Identities=16% Similarity=0.328 Sum_probs=104.8
Q ss_pred CCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC------CC-CEEEEEECCCCHHHHHHCCC
Q ss_conf 457089569636999998139993999997899966774899999999879------99-39999967674888987799
Q 027830 26 HRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN------PD-VQFLQVNYEEHKSMCYSLNV 98 (218)
Q Consensus 26 ~~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~------~~-v~~~~Vd~~~~~~l~~~~~I 98 (218)
..+++.++. ++|...+.. +++++|+|||+||++|+.+.|.|+++++.+ .+ +.|++|||+.+..+|++|+|
T Consensus 4 ~~~v~~l~~-~~f~~~~~~--~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v 80 (382)
T 2r2j_A 4 GSEITSLDT-ENIDEILNN--ADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRI 80 (382)
T ss_dssp ----CBCCT-TTHHHHHHH--CSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTC
T ss_pred CCCEEECCH-HHHHHHHHC--CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHCCC
T ss_conf 886288978-889999816--98399999899987899877999999999886368888369999979766889985699
Q ss_pred CCCCEEEEEECCCEEEE-EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHCCC-CEEEECCCCC
Q ss_conf 82778999969982398-870485389999999995499999999988998-788999981998-3143179999
Q 027830 99 HVLPFFRFYRGAHGRVC-SFSCTNATIKKFKDALAKHTPDRCGLGPTKGLE-EKELLALAANKD-LSFNYTPKPH 170 (218)
Q Consensus 99 ~~~Pti~lf~~g~~~~~-~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~l~-~~~l~~~~~~~~-~v~~y~p~~~ 170 (218)
.++||+++|++|+ .+. .|. |.++.+.|.+|+.+.+++. +..+. ..++..+..+.. ++.||..+..
T Consensus 81 ~~~Pt~~~f~~G~-~~~~~~~-G~~~~~~l~~~i~~~~~~~-----v~~l~~~~~l~~l~~~~~~~v~ff~~~~~ 148 (382)
T 2r2j_A 81 SKYPTLKLFRNGM-MMKREYR-GQRSVKALADYIRQQKSDP-----IQEIRDLAEITTLDRSKRNIIGYFEQKDS 148 (382)
T ss_dssp CEESEEEEEETTE-EEEEECC-SCCSHHHHHHHHHHHHSCC-----CEEC------------CCEEEEEESCSSS
T ss_pred CCCCEEEEEECCC-EEEEEEC-CCCHHHHHHHHHHHHCCCC-----CEECCCHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 8688799996996-8665304-7404999999999756677-----51059899999736788889999788778
No 7
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=1.00 E-value=1 Score=148.99 Aligned_cols=121 Identities=15% Similarity=0.305 Sum_probs=68.2
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCH
Q ss_conf 999399999789996677489999999987999-3999996767488898779982778999969982398870485389
Q 027830 46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATI 124 (218)
Q Consensus 46 ~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf~~g~~~~~~~~~g~~~~ 124 (218)
.+++++|+|||+||++|+.+.|.|+++++.+.+ +.|+.||++++..+++.|+|.++||+++|++|+ ...+. |.++.
T Consensus 454 ~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~--~~~~~-g~~~~ 530 (780)
T 3apo_A 454 DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSS--IHEYE-GHHSA 530 (780)
T ss_dssp CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE--EEEEC-SCSCH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHCCCCCCCEEEEECCCC--EEEEC-CCCCH
T ss_conf 8986999998999988998769999999985278499999678879999982987688699972895--02313-75558
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCC---C--CEEEECCCCCCCCC
Q ss_conf 99999999549999999998899878899998199---8--31431799999999
Q 027830 125 KKFKDALAKHTPDRCGLGPTKGLEEKELLALAANK---D--LSFNYTPKPHPMPA 174 (218)
Q Consensus 125 ~~l~~~i~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~--~v~~y~p~~~~~p~ 174 (218)
+.|.+|+.+.+. +++..++.++|+.++..+ . ++.||+|||++|..
T Consensus 531 ~~l~~fi~~~~~-----~~v~~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~ 580 (780)
T 3apo_A 531 EQILEFIEDLRN-----PSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQV 580 (780)
T ss_dssp HHHHHHHHHHHS-----CSEEECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHH
T ss_pred HHHHHHHHHHCC-----CCEEECCCCCHHHHHHCCCCCCEEEEEEECCCCHHHHH
T ss_conf 899999875056-----63352573027888633677870799998998978998
No 8
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=1.00 E-value=1 Score=148.03 Aligned_cols=109 Identities=19% Similarity=0.452 Sum_probs=96.6
Q ss_pred CCCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHCCCCCCC
Q ss_conf 345708956963699999813999399999789996677489999999987999--399999676748889877998277
Q 027830 25 VHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVHVLP 102 (218)
Q Consensus 25 ~~~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--v~~~~Vd~~~~~~l~~~~~I~~~P 102 (218)
....+..+++ ++|...+ .++++++|+|||+||++|+.+.|.|+++++.+.+ +.|++|||+.+..+|++|+|.++|
T Consensus 12 ~~~~v~~l~~-~~f~~~~--~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P 88 (504)
T 2b5e_A 12 EDSAVVKLAT-DSFNEYI--QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFP 88 (504)
T ss_dssp TTSSCEECCT-TTHHHHH--TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSS
T ss_pred CCCCCEECCH-HHHHHHH--HCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCCCCC
T ss_conf 8887388788-7899998--449959999989989778876899999999715698699999898778899855887687
Q ss_pred EEEEEECCCEE--EEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 89999699823--9887048538999999999549999
Q 027830 103 FFRFYRGAHGR--VCSFSCTNATIKKFKDALAKHTPDR 138 (218)
Q Consensus 103 ti~lf~~g~~~--~~~~~~g~~~~~~l~~~i~~~~~~~ 138 (218)
|+++|++|+ . ...|. |.++.+.|.+|+.+.+++.
T Consensus 89 t~~~~~~g~-~~~~~~~~-G~~~~~~l~~~l~~~~~~~ 124 (504)
T 2b5e_A 89 SLKIFKNSD-VNNSIDYE-GPRTAEAIVQFMIKQSQPA 124 (504)
T ss_dssp EEEEEETTC-TTCEEECC-SCCSHHHHHHHHHHHTSCS
T ss_pred EEEEEECCC-CCCCEEEC-CCCCHHHHHHHHHHHCCCC
T ss_conf 799981896-14414524-8889999999998754776
No 9
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=1.00 E-value=1 Score=147.60 Aligned_cols=134 Identities=12% Similarity=0.148 Sum_probs=110.2
Q ss_pred CCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHH-------HHHHHHHCC--CCEEEEEECCCCHHHHHHC
Q ss_conf 4570895696369999981399939999978999667748999-------999998799--9399999676748889877
Q 027830 26 HRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPK-------ICQLAEMNP--DVQFLQVNYEEHKSMCYSL 96 (218)
Q Consensus 26 ~~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~-------~~~la~~~~--~v~~~~Vd~~~~~~l~~~~ 96 (218)
...+.+++. ++|.+.+. ++++++|+|||+||+ |+.+.|. |+++++.+. ++.|++|||+++..+|++|
T Consensus 10 ~~~v~~l~~-~~f~~~i~--~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~ 85 (350)
T 1sji_A 10 KDRVVSLTE-KNFKQVLK--KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKL 85 (350)
T ss_dssp CCCCEEECH-HHHHHHHT--TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHH
T ss_pred CCCCEECCH-HHHHHHHH--HCCEEEEEEECCCCC-CHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHC
T ss_conf 985089988-89999996--098499999899986-06647000034689999999875369079998577788899866
Q ss_pred CCCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHHH-CCC--CEEEECCCCCC
Q ss_conf 998277899996998239887048538999999999549999999998899-8788999981-998--31431799999
Q 027830 97 NVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGL-EEKELLALAA-NKD--LSFNYTPKPHP 171 (218)
Q Consensus 97 ~I~~~Pti~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~l-~~~~l~~~~~-~~~--~v~~y~p~~~~ 171 (218)
+|.++||+++|++|+ ...|. |.++.+.|.+|+.+.+++. +..+ +.+++..+.. ..+ ++.||.++...
T Consensus 86 ~v~~~Pt~~~~~~g~--~~~~~-G~~~~~~l~~~i~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~vv~ff~~~~~~ 156 (350)
T 1sji_A 86 GFDEEGSLYVLKGDR--TIEFD-GEFAADVLVEFLLDLIEDP-----VEIINSKLEVQAFERIEDQIKLIGFFKSEESE 156 (350)
T ss_dssp TCCSTTEEEEEETTE--EEEEC-SCCCHHHHHHHHHTTSSCS-----EEECCSHHHHHHHHHCCSSCEEEEECSCTTSH
T ss_pred CCCCCCEEEEEECCC--EEEEC-CCCCHHHHHHHHHHHCCCC-----CEECCCHHHHHHHHCCCCCCEEEEEECCCCCH
T ss_conf 987365699998992--78856-9889999999999714775-----45526667899986357874899998998827
No 10
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=1.00 E-value=1 Score=145.49 Aligned_cols=132 Identities=18% Similarity=0.298 Sum_probs=110.3
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---CE
Q ss_conf 422124089998999999853345708956963699999813999399999789996677489999999987999---39
Q 027830 4 ELFFKKIKPSPREEAHPSSPLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQ 80 (218)
Q Consensus 4 ~~~~~~~~~~~~~~~~p~~~~~~~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~---v~ 80 (218)
.++.+++.++++|+++|.. ....+..++. ++|...+.+ ++++++|+|||+||++|+.+.|.|+++++.+.+ +.
T Consensus 331 ~~~~g~~~~~~~s~~~p~~--~~~~v~~~~~-~~~~~~~~~-~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~ 406 (481)
T 3f8u_A 331 DYFDGNLKRYLKSEPIPES--NDGPVKVVVA-ENFDEIVNN-ENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIV 406 (481)
T ss_dssp HHHHTCCCCCCCCCCCCSC--CCSSSEEECT-TTHHHHHTC-TTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEE
T ss_pred HHHCCCCCCCCCCCCCCCC--CCCCEEEECC-CCHHHHHHC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 9754776300016888877--8887488546-689999605-79868999956848547776599999999844699889
Q ss_pred EEEEECCCCHHHHHHCCCCCCCEEEEEECCCE-EEEEEECCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99996767488898779982778999969982-39887048538999999999549999999
Q 027830 81 FLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG-RVCSFSCTNATIKKFKDALAKHTPDRCGL 141 (218)
Q Consensus 81 ~~~Vd~~~~~~l~~~~~I~~~Pti~lf~~g~~-~~~~~~~g~~~~~~l~~~i~~~~~~~~~~ 141 (218)
|++||++.+ +++.+|+|.++||+++|++|.. ....+. |.++.+.|.+||.++.......
T Consensus 407 ~~~id~~~~-~~~~~~~v~~~Pt~~~~~~~~~~~~~~~~-G~~~~~~l~~~l~~~~~~~~~~ 466 (481)
T 3f8u_A 407 IAKMDATAN-DVPSPYEVRGFPTIYFSPANKKLNPKKYE-GGRELSDFISYLQREATNPPVI 466 (481)
T ss_dssp EEEEETTSS-CCCTTCCCCSSSEEEEECTTCTTSCEECC-SCCSHHHHHHHHHHHCSSCCCC
T ss_pred EEEEECCCH-HHHHHCCCCCCCEEEEEECCCEEEEEEEC-CCCCHHHHHHHHHHHCCCCCCC
T ss_conf 999979844-54764797234779999699857316958-9899999999999726896463
Done!