BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027832
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NOL|A Chain A, Structure Of Catalytically Inactive Human 8-Oxoguanine
Glycosylase Distal Crosslink To Oxog Dna
Length = 325
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
F+CSSNNNIARIT MV+ L + G L ++ +H FP
Sbjct: 141 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 180
>pdb|2NOH|A Chain A, Structure Of Catalytically Inactive Q315a Human 8-
Oxoguanine Glycosylase Complexed To 8-oxoguanine Dna
Length = 325
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
F+CSSNNNIARIT MV+ L + G L ++ +H FP
Sbjct: 141 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 180
>pdb|1HU0|A Chain A, Crystal Structure Of An Hogg1-Dna Borohydride Trapped
Intermediate Complex
pdb|1LWV|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Aminoguanine
pdb|1LWW|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Bromoguanine
pdb|1LWY|A Chain A, Hogg1 Borohydride-Trapped Intermediate Without
8-Oxoguanine
Length = 324
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 20 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 79
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 80 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 139
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
F+CSSNNNIARIT MV+ L + G L ++ +H FP
Sbjct: 140 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 179
>pdb|2NOZ|A Chain A, Structure Of Q315f Human 8-Oxoguanine Glycosylase Distal
Crosslink To 8-Oxoguanine Dna
Length = 325
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
F+CSSNNNIARIT MV+ L + G L ++ +H FP
Sbjct: 141 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 180
>pdb|1FN7|A Chain A, Coupling Of Damage Recognition And Catalysis By A Human
Base-Excision Dna Repair Protein
Length = 317
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
F+CSSNNNIARIT MV+ L + G L ++ +H FP
Sbjct: 135 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 174
>pdb|1EBM|A Chain A, Crystal Structure Of The Human 8-Oxoguanine Glycosylase
(Hogg1) Bound To A Substrate Oligonucleotide
Length = 317
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
F+CSSNNNIARIT MV+ L + G L ++ +H FP
Sbjct: 135 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 174
>pdb|1N3C|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-oxoguanine Glycosylase
Length = 317
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
F+CSSNNNIARIT MV+ L + G L ++ +H FP
Sbjct: 135 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 174
>pdb|1N3A|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-Oxoguanine Glycosylase
Length = 317
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
F+CSSNNNIARIT MV+ L + G L ++ +H FP
Sbjct: 135 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 174
>pdb|1N39|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-Oxoguanine Glycosylase
pdb|1M3Q|A Chain A, Crystal Structure Of Hogg1 D268e Mutant With Base-Excised
Dna And 8-Aminoguanine
pdb|1M3H|A Chain A, Crystal Structure Of Hogg1 D268e Mutant With Product
Oligonucleotide
Length = 317
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
F+CSSNNNIARIT MV+ L + G L ++ +H FP
Sbjct: 135 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 174
>pdb|2XHI|A Chain A, Separation-Of-Function Mutants Unravel The Dual Reaction
Mode Of Human 8-Oxoguanine Dna Glycosylase
Length = 360
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 38 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 97
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 98 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 157
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
F+CSSNNNIARIT MV+ L + G L ++ +H FP
Sbjct: 158 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 197
>pdb|1KO9|A Chain A, Native Structure Of The Human 8-Oxoguanine Dna Glycosylase
Hogg1
Length = 345
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 23 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 82
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 83 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 142
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
F+CSSNNNIARIT MV+ L + G L ++ +H FP
Sbjct: 143 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 182
>pdb|3IH7|A Chain A, Crystal Structure Of Catalytically Active Human
8-Oxoguanine Glycosylase Distally Crosslinked To
Guanine-Containing Dna
Length = 316
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 12/163 (7%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQ--------NGDV 89
W + +SEL L L P+GQ+FRW++ P ++G + + +L + GD+
Sbjct: 14 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDL 73
Query: 90 CYHIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVE 149
+P E A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+E
Sbjct: 74 SQASRPTPDE---LEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIE 130
Query: 150 CLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
CL F+CSSNNNIARIT MV+ L + G L ++ +H FP
Sbjct: 131 CLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 173
>pdb|2NOE|A Chain A, Structure Of Catalytically Inactive G42a Human
8-Oxoguanine Glycosylase Complexed To 8-Oxoguanine Dna
Length = 325
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 6/160 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+ Q+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSAQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
F+CSSNNNIARIT MV+ L + G L ++ +H FP
Sbjct: 141 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 180
>pdb|2NOB|A Chain A, Structure Of Catalytically Inactive H270a Human 8-
Oxoguanine Glycosylase Crosslinked To 8-Oxoguanine Dna
Length = 325
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 6/160 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
F+CSS NNIARIT MV+ L + G L ++ +H FP
Sbjct: 141 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 180
>pdb|3KTU|A Chain A, Structure Of Human 8-Oxoguanine Glycosylase 1 Bound To
Fluorninated Oxog-Containing Dna
Length = 317
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 6/160 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
F+CSS NNIARIT MV+ L + G L ++ +H FP
Sbjct: 135 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 174
>pdb|1YQK|A Chain A, Human 8-Oxoguanine Glycosylase Crosslinked With Guanine
Containing Dna
Length = 319
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 6/160 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
F+CSS NNIARIT MV+ L + G L ++ +H FP
Sbjct: 135 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 174
>pdb|1YQL|A Chain A, Catalytically Inactive Hogg1 Crosslinked With 7-Deaza-8-
Azaguanine Containing Dna
pdb|1YQM|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To 7-Deazaguanine Containing Dna
pdb|1YQR|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To Oxog Containing Dna
Length = 319
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 6/160 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
F+CSS NNIARIT MV+ L + G L ++ +H FP
Sbjct: 135 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 174
>pdb|2I5W|A Chain A, Structure Of Hogg1 Crosslinked To Dna Sampling A Normal G
Adjacent To An Oxog
Length = 315
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 6/160 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
F+CSS NNIARIT MV+ L + G L ++ +H FP
Sbjct: 135 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 174
>pdb|2NOF|A Chain A, Structure Of Q315f Human 8-oxoguanine Glycosylase Proximal
Crosslink To 8-oxoguanine Dna
Length = 325
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 6/160 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
F+CSS NNIARIT MV+ L + G L ++ +H FP
Sbjct: 141 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 180
>pdb|2NOI|A Chain A, Structure Of G42a Human 8-Oxoguanine Glycosylase
Crosslinked To Undamaged G-Containing Dna
Length = 325
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 85/160 (53%), Gaps = 6/160 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+ Q+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSAQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFP 191
F+CSS NNIARIT MV+ L + G L ++ +H FP
Sbjct: 141 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFP 180
>pdb|3F0Z|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN ITS APO-Form
Length = 292
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
Query: 48 LSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALL 107
L F GQ FRW + Y G ++ ++ + V Y+I+ E K+
Sbjct: 21 FELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIGEDVVIYNIN----EEEFKNVWS 76
Query: 108 DFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITK 167
++ ++ GE+ + S D + + G R+LRQDP E LL F+ S+NN I I K
Sbjct: 77 EYFDLYRDYGEIKKELS-RDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPXIKK 135
Query: 168 MVDFLASLGSHLGNVEGFEFHEFP 191
++ ++ +G ++ FP
Sbjct: 136 CINNISEKAGKKLEYKGKIYYAFP 159
>pdb|3I0X|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA
CONTAINING ADENINE Opposite To 8-Oxog
Length = 291
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
Query: 48 LSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALL 107
L F GQ FRW + Y G ++ ++ + V Y+I+ E K+
Sbjct: 21 FELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIGEDVVIYNIN----EEEFKNVWS 76
Query: 108 DFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITK 167
++ ++ GE+ + S D + + G R+LRQDP E LL F+ S+NN I I K
Sbjct: 77 EYFDLYRDYGEIKKELS-RDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPMIKK 135
Query: 168 MVDFLASLGSHLGNVEGFEFHEFP 191
++ ++ +G ++ FP
Sbjct: 136 CINNISEKAGKKLEYKGKIYYAFP 159
>pdb|3F10|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine Dna Glycosylase In Complex With
8-Oxoguanosine
Length = 292
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
Query: 48 LSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALL 107
L F GQ FRW + Y G ++ ++ + V Y+I+ E K+
Sbjct: 21 FELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIGEDVVIYNIN----EEEFKNVWS 76
Query: 108 DFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITK 167
++ ++ GE+ + S D + + G R+LRQDP E LL F+ S+NN I I K
Sbjct: 77 EYFDLYRDYGEIKKELS-RDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPMIKK 135
Query: 168 MVDFLASLGSHLGNVEGFEFHEFP 191
++ ++ +G ++ FP
Sbjct: 136 CINNISEKAGKKLEYKGKIYYAFP 159
>pdb|3I0W|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA
CONTAINING CYTOSINE Opposite To 8-Oxog
Length = 290
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
Query: 48 LSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALL 107
L F GQ FRW + Y G ++ ++ + V Y+I+ E K+
Sbjct: 21 FELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIGEDVVIYNIN----EEEFKNVWS 76
Query: 108 DFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITK 167
++ ++ GE+ + S D + + G R+LRQDP E LL F+ S+NN I I K
Sbjct: 77 EYFDLYRDYGEIKKELS-RDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPMIKK 135
Query: 168 MVDFLASLGSHLGNVEGFEFHEFP 191
++ ++ +G ++ FP
Sbjct: 136 CINNISEKAGKKLEYKGKIYYAFP 159
>pdb|1TVL|A Chain A, Structure Of Ytnj From Bacillus Subtilis
Length = 454
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 74 IGPHLISLKHLQNGDVCYHIHTSPSEPAAKS 104
I L+SL H+ G +++ TSP E AA++
Sbjct: 108 ISRQLMSLDHISGGRAGWNLVTSPQEGAARN 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,362,451
Number of Sequences: 62578
Number of extensions: 195176
Number of successful extensions: 411
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 39
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)