BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027832
(218 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FNY7|OGG1_ARATH N-glycosylase/DNA lyase OGG1 OS=Arabidopsis thaliana GN=OGG1 PE=1
SV=1
Length = 365
Score = 267 bits (682), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 137/219 (62%), Positives = 158/219 (72%), Gaps = 13/219 (5%)
Query: 11 LKRPRLTPQP------------PPTPPNPQTLTTNKPSKWTPLNLTQSELSLPLTFPTGQ 58
+KRPR T QP P TP Q L KW PL LT +EL+LPLTFPTGQ
Sbjct: 1 MKRPRPTSQPSISSTVKPPLSPPVTPILKQKLHRTGTPKWFPLKLTHTELTLPLTFPTGQ 60
Query: 59 TFRWKKTGPLQYTGPIGPHLISLKHLQNGD-VCYHIHTSPSEPAAKSALLDFLNMGISLG 117
TFRWKKTG +QY+G IGPHL+SL+ D V Y +H S S +A+ ALLDFLN ISL
Sbjct: 61 TFRWKKTGAIQYSGTIGPHLVSLRQRPGDDAVSYCVHCSTSPKSAELALLDFLNAEISLA 120
Query: 118 ELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGS 177
ELW FS D RF ELA++L GARVLRQDP+ECL+QFLCSSNNNIARITKMVDF++SLG
Sbjct: 121 ELWSDFSKKDPRFGELARHLRGARVLRQDPLECLIQFLCSSNNNIARITKMVDFVSSLGL 180
Query: 178 HLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRCFAI 216
HLG+++GFEFH+FPSL+RLS VSE E R AGFGYR I
Sbjct: 181 HLGDIDGFEFHQFPSLDRLSRVSEEEFRKAGFGYRAKYI 219
>sp|O15527|OGG1_HUMAN N-glycosylase/DNA lyase OS=Homo sapiens GN=OGG1 PE=1 SV=2
Length = 345
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 102/188 (54%), Gaps = 7/188 (3%)
Query: 32 TNKPSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCY 91
+ P+ W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 17 ASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCT 76
Query: 92 HIHTSPSE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQD 146
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQD
Sbjct: 77 VYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQD 136
Query: 147 PVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPSLERLSL-VSEVEL 204
P+ECL F+CSSNNNIARIT MV+ L + G L ++ +H FPSL+ L+ E L
Sbjct: 137 PIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHL 196
Query: 205 RNAGFGYR 212
R G GYR
Sbjct: 197 RKLGLGYR 204
>sp|O08760|OGG1_MOUSE N-glycosylase/DNA lyase OS=Mus musculus GN=Ogg1 PE=2 SV=2
Length = 345
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 8/204 (3%)
Query: 22 PTPPNPQTLTTNKPSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISL 81
P+ +TL+++ P+ W + +SEL L L +GQ+FRWK+ P ++G + + +L
Sbjct: 8 PSSMRHRTLSSS-PALWASIPCPRSELRLDLVLASGQSFRWKEQSPAHWSGVLADQVWTL 66
Query: 82 KHLQNGDVCYHIHTSPSEPAAKS-----ALLDFLNMGISLGELWEGFSASDCRFAELAKY 136
++ C S+ + + L + + +SL +L+ +++ D F +A+
Sbjct: 67 TQTEDQLYCTVYRGDDSQVSRPTLEELETLHKYFQLDVSLAQLYSHWASVDSHFQRVAQK 126
Query: 137 LAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPSLER 195
G R+LRQDP ECL F+CSSNNNIARIT MV+ L + G L ++ +H FP+L
Sbjct: 127 FQGVRLLRQDPTECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPNLHA 186
Query: 196 LSL-VSEVELRNAGFGYRCFAIKT 218
L+ +E LR G GYR ++
Sbjct: 187 LAGPEAETHLRKLGLGYRARYVRA 210
>sp|O70249|OGG1_RAT N-glycosylase/DNA lyase OS=Rattus norvegicus GN=Ogg1 PE=2 SV=1
Length = 345
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 99/188 (52%), Gaps = 7/188 (3%)
Query: 32 TNKPSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCY 91
T+ P+ W + +SEL L L +GQ+FRW++ P ++G + + +L ++ C
Sbjct: 17 TSSPALWASIPCPRSELRLDLVLASGQSFRWREQSPAHWSGVLADQVWTLTQTEDQLYCT 76
Query: 92 HIHTSPSEPAAKS-----ALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQD 146
+ + L + + +SL +L+ +++ D F +A+ G R+LRQD
Sbjct: 77 VYRGDKGQVGRPTLEELETLHKYFQLDVSLTQLYSHWASVDSHFQSVAQKFQGVRLLRQD 136
Query: 147 PVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPSLERLSL-VSEVEL 204
P ECL F+CSSNNNIARIT MV+ L + G L ++ +H FP+L L+ E L
Sbjct: 137 PTECLFSFICSSNNNIARITGMVERLCQAFGPRLVQLDDVTYHGFPNLHALAGPEVETHL 196
Query: 205 RNAGFGYR 212
R G GYR
Sbjct: 197 RKLGLGYR 204
>sp|P53397|OGG1_YEAST N-glycosylase/DNA lyase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=OGG1 PE=1 SV=1
Length = 376
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 106/195 (54%), Gaps = 15/195 (7%)
Query: 37 KWTPLNLTQSELSLPLTFPTGQTFRW---KKTGPLQYTGPIGPH----LISLKHLQNGDV 89
K+ L + +SEL L GQ+FRW +K T IG ++ L+ + ++
Sbjct: 4 KFGKLAINKSELCLANVLQAGQSFRWIWDEKLNQYSTTMKIGQQEKYSVVILRQDEENEI 63
Query: 90 CYHIHTSP--SEPAAKSALLDFLNMGISLGELWEGFSA-SDCRFAELAKYLAGARVLRQD 146
+ ++ A K+ L+ + + +SL L++ SD FA+L+ G R+L Q+
Sbjct: 64 LEFVAVGDCGNQDALKTHLMKYFRLDVSLKHLFDNVWIPSDKAFAKLSP--QGIRILAQE 121
Query: 147 PVECLLQFLCSSNNNIARITKMVDFLAS-LGSHLGNVEGFEFHEFPSLERL-SLVSEVEL 204
P E L+ F+CSSNNNI+RIT+M + L S G+ + ++G +H FP+ E L S +E +L
Sbjct: 122 PWETLISFICSSNNNISRITRMCNSLCSNFGNLITTIDGVAYHSFPTSEELTSRATEAKL 181
Query: 205 RNAGFGYRC-FAIKT 218
R GFGYR + I+T
Sbjct: 182 RELGFGYRAKYIIET 196
>sp|Q9V3I8|OGG1_DROME N-glycosylase/DNA lyase OS=Drosophila melanogaster GN=Ogg1 PE=2
SV=2
Length = 343
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 14/183 (7%)
Query: 41 LNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGD--VCYHIHTSPS 98
+ L+ E L T GQ+FRW+ T G + LQ + + Y + + S
Sbjct: 27 IGLSLEECDLERTLLGGQSFRWRSICDGNRTKYGGVVFNTYWVLQQEESFITYEAYGTSS 86
Query: 99 EPAAK---SALLDFLNMGISLGELWEGFSASDCRFAELAKYLAG-ARVLRQDPVECLLQF 154
A K S + D+L + L + + + D F K+L+ R+L Q+P E + F
Sbjct: 87 PLATKDYSSLISDYLRVDFDLKVNQKDWLSKDDNFV---KFLSKPVRLLSQEPFENIFSF 143
Query: 155 LCSSNNNIARITKMVD-FLASLGSHLGNVEGFEFHEFPSLERLSLV----SEVELRNAGF 209
LCS NNNI RI+ M++ F A+ G+ +G+ G + + FP++ R + +LR A F
Sbjct: 144 LCSQNNNIKRISSMIEWFCATFGTKIGHFNGADAYTFPTINRFHDIPCEDLNAQLRAAKF 203
Query: 210 GYR 212
GYR
Sbjct: 204 GYR 206
>sp|O27397|OGG1_METTH Probable N-glycosylase/DNA lyase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1342 PE=3 SV=1
Length = 312
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 19/94 (20%)
Query: 143 LRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSE- 201
L +DP EC++ + S+N ++ R T+ ++ + L G FH FPS L+ V+E
Sbjct: 106 LAKDPFECVISSIASANCSVVRWTRSIEDIRRLWGQANTFNGETFHTFPSPHVLTGVAEG 165
Query: 202 ------------------VELRNAGFGYRCFAIK 217
+LR+ G GYR I+
Sbjct: 166 SLEDLQRAEDNLPSDFSFNDLRSCGVGYRAPYIR 199
>sp|P12255|FHAB_BORPE Filamentous hemagglutinin OS=Bordetella pertussis (strain Tohama I /
ATCC BAA-589 / NCTC 13251) GN=fhaB PE=1 SV=4
Length = 3590
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 2 QSLKNSPSPLKRPRLTPQPPPTPPNPQTLTTNKPSKWTP 40
++ K P PL ++T PPP Q L KP K TP
Sbjct: 3400 ETTKPLPKPLPVAKVTKAPPPVVETAQPLPPVKPQKATP 3438
>sp|Q54X08|MYBV_DICDI Myb-like protein V OS=Dictyostelium discoideum GN=mybV PE=4 SV=2
Length = 803
Score = 32.7 bits (73), Expect = 2.0, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 2 QSLKNSPSPLKRPRLTPQPPPTPPNPQTLTTNKPSKWTPLNLTQSELSLP 51
+S + +P K+P TP P PN T K S TP+ T+ + P
Sbjct: 689 KSNQTPTTPTKKPSQTPITPTKKPNQTPTTPTKKSSQTPITPTKKSTNRP 738
>sp|Q8WXK1|ASB15_HUMAN Ankyrin repeat and SOCS box protein 15 OS=Homo sapiens GN=ASB15
PE=2 SV=3
Length = 588
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 19/104 (18%)
Query: 119 LWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSH 178
L+ G S +D E+ LA DP+ CLL + ++N I R+ L SH
Sbjct: 354 LYFGVSNNDVHCTEV--LLAAGADPNLDPLNCLLVAVRANNYEIVRL---------LLSH 402
Query: 179 LGNVEGFEFH----EFPSLERLSLVSEVELR---NAGFGYR-CF 214
NV + H FPS+ + +L EV LR N G+ CF
Sbjct: 403 GANVNCYFMHVNDTRFPSVIQYALNDEVMLRLLLNNGYQVEMCF 446
>sp|Q12SM9|ARGB_SHEDO Acetylglutamate kinase OS=Shewanella denitrificans (strain OS217 /
ATCC BAA-1090 / DSM 15013) GN=argB PE=3 SV=1
Length = 260
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 137 LAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERL 196
L G RV +D + ++ L ++N I + L S+G LG +G H ERL
Sbjct: 64 LDGLRVTPEDQIPIVVGALAGTSNKILQAAAAKAGLVSVGMSLG--DGNTVHAKIKDERL 121
Query: 197 SLVSEV 202
LV EV
Sbjct: 122 GLVGEV 127
>sp|B0TXX4|SYP_FRAP2 Proline--tRNA ligase OS=Francisella philomiragia subsp.
philomiragia (strain ATCC 25017) GN=proS PE=3 SV=1
Length = 565
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 46 SELSLPLTFPT---GQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYH-IHTSPSEPA 101
SEL LP P+ +T RW K GP L+ LK D CY H P
Sbjct: 67 SELLLPSVLPSELLQETHRWDK---------FGPELLKLKDRHERDFCYGPTHEEPIVDM 117
Query: 102 AKSALLDFLNMGISLGELWEGF 123
A+ + + + ++L ++ F
Sbjct: 118 ARDTIKSYKQLPLNLYQIQTKF 139
>sp|A0Q7N3|SYP_FRATN Proline--tRNA ligase OS=Francisella tularensis subsp. novicida
(strain U112) GN=proS PE=3 SV=1
Length = 565
Score = 30.4 bits (67), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 46 SELSLPLTFPT---GQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYH-IHTSPSEPA 101
SEL LP P+ +T RW K GP L+ L N D CY H P
Sbjct: 67 SELLLPSILPSELLQETHRWDK---------FGPELLKLHDRHNRDFCYGPTHEEPIVDM 117
Query: 102 AKSALLDFLNMGISLGELWEGF 123
A+ + + + ++L ++ F
Sbjct: 118 ARDTIKSYKQLPLNLYQIQTKF 139
>sp|Q0BMT1|SYP_FRATO Proline--tRNA ligase OS=Francisella tularensis subsp. holarctica
(strain OSU18) GN=proS PE=3 SV=1
Length = 565
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 46 SELSLPLTFPT---GQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYH-IHTSPSEPA 101
SEL LP P+ +T RW K GP L+ L N D CY H P
Sbjct: 67 SELLLPSILPSELLQETHRWDK---------FGPELLKLHDRHNRDFCYGPTHEEPIVDM 117
Query: 102 AKSALLDFLNMGISLGELWEGF 123
A+ + + + ++L ++ F
Sbjct: 118 ARDTIKSYKQLPLNLYQIQTKF 139
>sp|Q2A4E9|SYP_FRATH Proline--tRNA ligase OS=Francisella tularensis subsp. holarctica
(strain LVS) GN=proS PE=3 SV=1
Length = 565
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 46 SELSLPLTFPT---GQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYH-IHTSPSEPA 101
SEL LP P+ +T RW K GP L+ L N D CY H P
Sbjct: 67 SELLLPSILPSELLQETHRWDK---------FGPELLKLHDRHNRDFCYGPTHEEPIVDM 117
Query: 102 AKSALLDFLNMGISLGELWEGF 123
A+ + + + ++L ++ F
Sbjct: 118 ARDTIKSYKQLPLNLYQIQTKF 139
>sp|A7NB07|SYP_FRATF Proline--tRNA ligase OS=Francisella tularensis subsp. holarctica
(strain FTNF002-00 / FTA) GN=proS PE=3 SV=1
Length = 565
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 46 SELSLPLTFPT---GQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYH-IHTSPSEPA 101
SEL LP P+ +T RW K GP L+ L N D CY H P
Sbjct: 67 SELLLPSILPSELLQETHRWDK---------FGPELLKLHDRHNRDFCYGPTHEEPIVDM 117
Query: 102 AKSALLDFLNMGISLGELWEGF 123
A+ + + + ++L ++ F
Sbjct: 118 ARDTIKSYKQLPLNLYQIQTKF 139
>sp|B2SFQ6|SYP_FRATM Proline--tRNA ligase OS=Francisella tularensis subsp. mediasiatica
(strain FSC147) GN=proS PE=3 SV=1
Length = 565
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 46 SELSLPLTFPT---GQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYH-IHTSPSEPA 101
SEL LP P+ +T RW K GP L+ L N D CY H P
Sbjct: 67 SELLLPSILPSELLQETHRWDK---------FGPELLKLHDRHNRDFCYGPTHEEPIVDM 117
Query: 102 AKSALLDFLNMGISLGELWEGF 123
A+ + + + ++L ++ F
Sbjct: 118 ARDTIKSYKQLPLNLYQIQTKF 139
>sp|A4IWT9|SYP_FRATW Proline--tRNA ligase OS=Francisella tularensis subsp. tularensis
(strain WY96-3418) GN=proS PE=3 SV=1
Length = 565
Score = 30.4 bits (67), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 46 SELSLPLTFPT---GQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYH-IHTSPSEPA 101
SEL LP P+ +T RW K GP L+ L N D CY H P
Sbjct: 67 SELLLPSILPSELLQETHRWDK---------FGPELLKLHDRHNRDFCYGPTHEEPIVDM 117
Query: 102 AKSALLDFLNMGISLGELWEGF 123
A+ + + + ++L ++ F
Sbjct: 118 ARDTIKSYKQLPLNLYQIQTKF 139
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,219,988
Number of Sequences: 539616
Number of extensions: 3681913
Number of successful extensions: 25594
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 24104
Number of HSP's gapped (non-prelim): 1269
length of query: 218
length of database: 191,569,459
effective HSP length: 113
effective length of query: 105
effective length of database: 130,592,851
effective search space: 13712249355
effective search space used: 13712249355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)