Query 027832
Match_columns 218
No_of_seqs 147 out of 880
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 18:02:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027832.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2201-2205//hhsearch_pdb/027832hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xhi_A N-glycosylase/DNA lyase 1.0 1 1 299.1 16.7 193 24-217 23-224 (360)
2 3i0w_A 8-oxoguanine-DNA-glycos 1.0 1 1 292.7 17.3 168 44-217 17-185 (290)
3 2jhn_A ALKA, 3-methyladenine D 1.0 1 1 193.6 13.6 156 52-217 28-189 (295)
4 1mpg_A ALKA, 3-methyladenine D 1.0 1 1 182.1 12.8 162 45-217 7-183 (282)
5 4b21_A Probable DNA-3-methylad 1.0 1 1 158.1 7.5 102 107-217 17-123 (232)
6 3s6i_A DNA-3-methyladenine gly 1.0 1 1 133.2 7.3 93 115-217 14-112 (228)
7 2yg9_A DNA-3-methyladenine gly 1.0 1 1 127.0 8.7 97 108-217 20-120 (225)
8 2h56_A DNA-3-methyladenine gly 1.0 1 1 124.1 8.8 96 108-217 14-112 (233)
9 1orn_A Endonuclease III; DNA r 1.0 1 1 85.6 6.2 76 128-217 12-94 (226)
10 2abk_A Endonuclease III; DNA-r 1.0 1 1 83.3 5.2 76 128-217 8-90 (211)
No 1
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=1.00 E-value=1 Score=299.12 Aligned_cols=193 Identities=34% Similarity=0.683 Sum_probs=171.8
Q ss_pred CCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEECCEEEEEEECCCCCEEEEEECCCC----
Q ss_conf 99955533-4699983305479987686710258984120680999069825995999997489948999808999----
Q 027832 24 PPNPQTLT-TNKPSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPS---- 98 (218)
Q Consensus 24 ~~~~~~~~-~~~~~~w~~l~~~~~~l~L~~tL~sGQ~FrW~~~~~~~y~gv~~~~vi~lrq~~~~~l~~~~~~~~~---- 98 (218)
|-.|+.-| .+...+|++|++++.+|||+.||.|||||||++.+++.|.||+++.++.|+|.+ +.+.|.+++...
T Consensus 23 ~~~~~~~~~~~~~~~w~~l~~~~~~~~L~~tl~~GQ~Frw~~~~d~~w~~v~~~~v~~l~q~~-~~v~~~~~~~~~~~~~ 101 (360)
T 2xhi_A 23 PRRMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTE-EQLHCTVYRGDKSQAS 101 (360)
T ss_dssp --CCSSCCTTTCGGGCEEEECCTTTCCHHHHTTTTSCSCCEEEETTEEEEEETTEEEEEEECS-SEEEEEEECCSSSCCC
T ss_pred CHHHHCCCCCCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEECCCCEEEEEECCEEEEEEECC-CEEEEEEECCCCCCCC
T ss_conf 014321324677678457368866658999818998646366699949999879799999849-9799999647643345
Q ss_pred --HHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HH
Q ss_conf --478999998654058996889977600692389999860994147999679999999973032999999999998-51
Q 027832 99 --EPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SL 175 (218)
Q Consensus 99 --~~~~~~~l~~yf~Ld~dl~~~~~~~~~~D~~l~~~~~~~~GlRilrqdpfE~LisfI~sqn~nI~rI~~mi~rL~-~~ 175 (218)
..+..+.+++||+||.|++.++++|...||.|+.+++.++|+|++++||||+||++|||||+++++|.+++++|+ .|
T Consensus 102 ~~~~~~~~~~r~~fdLd~d~~~~~~~l~~~Dp~l~~l~~~~~glR~~~~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~ 181 (360)
T 2xhi_A 102 RPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAF 181 (360)
T ss_dssp CCCHHHHHHHHHHTTTTSCHHHHHHHHHHHCHHHHHHHHHSTTCCCCCCCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 55389999998743468999999999873097999999976999888999999999999919473999999999999986
Q ss_pred CCCCCCCCCCEEECCCCHHHHHCCCH-HHHHHCCCCCCCCCCC
Q ss_conf 98766666831112998888824899-9897779871224456
Q 027832 176 GSHLGNVEGFEFHEFPSLERLSLVSE-VELRNAGFGYRCFAIK 217 (218)
Q Consensus 176 G~~i~~~~g~~~y~FPtpe~La~~~e-e~Lr~~glGyRA~yI~ 217 (218)
|+.+++++|..+|.||+|++|+++++ +.||.|||||||+||.
T Consensus 182 G~~~~~~~g~~~~~fPtpe~La~~~~ee~Lr~~Gl~~RA~~I~ 224 (360)
T 2xhi_A 182 GPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVS 224 (360)
T ss_dssp SCEEEEETTEEEECCCCHHHHTSTTHHHHHHHTTCTTHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHCCCCHHHHHHH
T ss_conf 8775567875423589999997599899998858817999999
No 2
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=1.00 E-value=1 Score=292.73 Aligned_cols=168 Identities=27% Similarity=0.469 Sum_probs=155.0
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCEEEEEECCEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99876867102589841206809990698259959999974899489998089994789999986540589968899776
Q 027832 44 TQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEGF 123 (218)
Q Consensus 44 ~~~~l~L~~tL~sGQ~FrW~~~~~~~y~gv~~~~vi~lrq~~~~~l~~~~~~~~~~~~~~~~l~~yf~Ld~dl~~~~~~~ 123 (218)
..++|||+.||+|||||||++.+++.|+||+++++|.++|.+ +.+. +++ ++.++..+.+++||+||.|++++++++
T Consensus 17 ~~~~~~l~~tl~~GQ~Frw~~~~~~~~~~v~~~~~~~l~q~~-~~~~--~~~-~~~~~~~~~~~~~fdLd~d~~~~~~~l 92 (290)
T 3i0w_A 17 NVENFELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIG-EDVV--IYN-INEEEFKNVWSEYFDLYRDYGEIKKEL 92 (290)
T ss_dssp SCCSCCHHHHHSSSSCSSEEECTTSCEEEEETTEEEEEEEET-TEEE--EET-CCHHHHHHTHHHHTTTTSCHHHHHHHH
T ss_pred ECCCCCHHHHHCCCCCCCCEEECCCEEEEEECCEEEEEEECC-CEEE--EEC-CCHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 066576899827467437679689839999899999999749-8799--975-998999999999758999999999987
Q ss_pred HCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCCCCCCCCCEEECCCCHHHHHCCCHH
Q ss_conf 00692389999860994147999679999999973032999999999998-51987666668311129988888248999
Q 027832 124 SASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPSLERLSLVSEV 202 (218)
Q Consensus 124 ~~~D~~l~~~~~~~~GlRilrqdpfE~LisfI~sqn~nI~rI~~mi~rL~-~~G~~i~~~~g~~~y~FPtpe~La~~~ee 202 (218)
. .||.|+++++.++|+|++++||||+||++|||||+|+++|.+++++|+ +||+++ +.+|..+|.|||||+|++++++
T Consensus 93 ~-~Dp~l~~~~~~~~glR~~~~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~-~~~g~~~~~fPtpe~la~~~~e 170 (290)
T 3i0w_A 93 S-RDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPMIKKCINNISEKAGKKL-EYKGKIYYAFPTVDKLHEFTEK 170 (290)
T ss_dssp T-TSHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEE-EETTEEEECCCCHHHHTTCCHH
T ss_pred H-HCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCHHHHHCCCHH
T ss_conf 3-0978999999779988889998999999999573669899999999999859876-6687522358849999779999
Q ss_pred HHHHCCCCCCCCCCC
Q ss_conf 897779871224456
Q 027832 203 ELRNAGFGYRCFAIK 217 (218)
Q Consensus 203 ~Lr~~glGyRA~yI~ 217 (218)
+|++||+||||+||.
T Consensus 171 ~L~~~g~g~Ra~~I~ 185 (290)
T 3i0w_A 171 DFEECTAGFRAKYLK 185 (290)
T ss_dssp HHHHTTCGGGHHHHH
T ss_pred HHHHCCCCHHHHHHH
T ss_conf 998859966999999
No 3
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=1.00 E-value=1 Score=193.55 Aligned_cols=156 Identities=14% Similarity=0.124 Sum_probs=129.5
Q ss_pred CCCCCCCCCCEEEECCCEEEEEECCEEEEEEECCCCCEEEEEECCC-CHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHH
Q ss_conf 1025898412068099906982599599999748994899980899-947899999865405899688997760069238
Q 027832 52 LTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP-SEPAAKSALLDFLNMGISLGELWEGFSASDCRF 130 (218)
Q Consensus 52 ~tL~sGQ~FrW~~~~~~~y~gv~~~~vi~lrq~~~~~l~~~~~~~~-~~~~~~~~l~~yf~Ld~dl~~~~~~~~~~D~~l 130 (218)
..+.+|+.+|+.+.+++ ..++.+++.+++.+.+....+. ..+...+.+++||+||.|++.+ ++...|+.+
T Consensus 28 e~~~~~~~~R~~~~~~~-------~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdLd~d~~~~--~~~~~D~~l 98 (295)
T 2jhn_A 28 DVVESGVWRRAIVLDGR-------AVAVMAYPESERTIVVEGNFENREWEAVRRKLVEYLGLQNPEELY--RFMDGDEKL 98 (295)
T ss_dssp CEEETTEEEEEEEETTE-------EEEEEEEEEETTEEEEEESSCGGGHHHHHHHHHHHHTCSCCHHHH--HHHHTSHHH
T ss_pred EEEECCEEEEEEEECCE-------EEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHH--HHHCCCHHH
T ss_conf 79709979999998992-------289999988999799961885164999999999981788998998--753349889
Q ss_pred HHHHHHCCCCCCCC---CCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCCCCCCCCCEEECCCCHHHHHCCCHHHHHH
Q ss_conf 99998609941479---99679999999973032999999999998-519876666683111299888882489998977
Q 027832 131 AELAKYLAGARVLR---QDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPSLERLSLVSEVELRN 206 (218)
Q Consensus 131 ~~~~~~~~GlRilr---qdpfE~LisfI~sqn~nI~rI~~mi~rL~-~~G~~i~~~~g~~~y~FPtpe~La~~~ee~Lr~ 206 (218)
+.+++.++|+|+.+ +||||+||++|||||+|+++|.+++++|+ .||+++ +.+|..+|.|||||+|+++++++||.
T Consensus 99 ~~l~~~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~-~~~g~~~~~fPtp~~la~~~~~~Lr~ 177 (295)
T 2jhn_A 99 RMLKNRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEV-EWNGLKFYGFPTQEAILKAGVEGLRE 177 (295)
T ss_dssp HHHHHHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEE-EETTEEEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCHHHHHCCCHHHHHH
T ss_conf 99999839988778788999999999998074119999999999999859987-77887300489999997699999988
Q ss_pred CCCCCC-CCCCC
Q ss_conf 798712-24456
Q 027832 207 AGFGYR-CFAIK 217 (218)
Q Consensus 207 ~glGyR-A~yI~ 217 (218)
|||++| |+||.
T Consensus 178 ~G~~~rKa~~i~ 189 (295)
T 2jhn_A 178 CGLSRRKAELIV 189 (295)
T ss_dssp TTCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
T ss_conf 699879999999
No 4
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=1.00 E-value=1 Score=182.10 Aligned_cols=162 Identities=14% Similarity=0.132 Sum_probs=130.9
Q ss_pred CCCCCCCCCCCC-----CCCCCEEEECCCEEE-EEE-CCE--EEEEEECCC-CCEEEEEECC--CCHHHHHHHHHHHHCC
Q ss_conf 987686710258-----984120680999069-825-995--999997489-9489998089--9947899999865405
Q 027832 45 QSELSLPLTFPT-----GQTFRWKKTGPLQYT-GPI-GPH--LISLKHLQN-GDVCYHIHTS--PSEPAAKSALLDFLNM 112 (218)
Q Consensus 45 ~~~l~L~~tL~s-----GQ~FrW~~~~~~~y~-gv~-~~~--vi~lrq~~~-~~l~~~~~~~--~~~~~~~~~l~~yf~L 112 (218)
+.+||++.+|.. ++.+.|... +.|. ++. ++. ++.+++.++ ..+.+++..+ ...+...+.+++||+|
T Consensus 7 ~~P~~~~~~l~~l~~~~~~~~e~~~~--~~y~r~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (282)
T 1mpg_A 7 QPPYDWSWMLGFLAARAVSSVETVAD--SYYARSLAVGEYRGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDL 84 (282)
T ss_dssp CSCCCHHHHHHHHHHHCCTTTEEECS--SCEEEEEEETTEEEEEEEEEETTTTEEEEEECGGGGGGHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHCCCCCCEEEECC--CEEEEEEEECCEEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 99979999999984799887589729--9899999989971899999828986799999569876599999999999859
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCCCCCCCCCEEECC
Q ss_conf 89968899776006923899998609941479-99679999999973032999999999998-51987666668311129
Q 027832 113 GISLGELWEGFSASDCRFAELAKYLAGARVLR-QDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEF 190 (218)
Q Consensus 113 d~dl~~~~~~~~~~D~~l~~~~~~~~GlRilr-qdpfE~LisfI~sqn~nI~rI~~mi~rL~-~~G~~i~~~~g~~~y~F 190 (218)
|.|+..+++.+. .+++.++|+|+++ +||||+||++|||||+|++++.+++++|+ .||+.+. .+| +++.|
T Consensus 85 d~d~~~~~~~l~-------~l~~~~~glR~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~-~~~-~~~~f 155 (282)
T 1mpg_A 85 QCNPQIVNGALG-------RLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLD-DFP-EYICF 155 (282)
T ss_dssp TCCHHHHHHHHG-------GGGTTCTTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCS-SCT-TCBCC
T ss_pred CCCHHHHHHHHH-------HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC-CCC-CCCCC
T ss_conf 999999999998-------999976897578989999999999992822599999999999998497777-888-76069
Q ss_pred CCHHHHHCCCHHHHHHCCC-CCCCCCCC
Q ss_conf 9888882489998977798-71224456
Q 027832 191 PSLERLSLVSEVELRNAGF-GYRCFAIK 217 (218)
Q Consensus 191 Ptpe~La~~~ee~Lr~~gl-GyRA~yI~ 217 (218)
||||+|+++++++||.||| ++||+||.
T Consensus 156 Ptp~~la~~~~~~Lr~~G~~~~ra~~i~ 183 (282)
T 1mpg_A 156 PTPQRLAAADPQALKALGMPLKRAEALI 183 (282)
T ss_dssp CCHHHHHTCCHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHCCCHHHHHHCCCCHHHHHHHH
T ss_conf 9999997699999987599778999999
No 5
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=1.00 E-value=1 Score=158.14 Aligned_cols=102 Identities=15% Similarity=0.222 Sum_probs=94.7
Q ss_pred HHHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCC---CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCCCCCC
Q ss_conf 865405899688997760069238999986099414---7999679999999973032999999999998-519876666
Q 027832 107 LDFLNMGISLGELWEGFSASDCRFAELAKYLAGARV---LRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNV 182 (218)
Q Consensus 107 ~~yf~Ld~dl~~~~~~~~~~D~~l~~~~~~~~GlRi---lrqdpfE~LisfI~sqn~nI~rI~~mi~rL~-~~G~~i~~~ 182 (218)
..+|+||.|+.++++++.+.||.|+.++++++|+|+ ..+||||+||++|||||++++++.+++++|+ .||+.
T Consensus 17 ~~~ldld~d~~~~~~~L~~~Dp~l~~li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~---- 92 (232)
T 4b21_A 17 GSHMSKDSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDN---- 92 (232)
T ss_dssp ----CHHHHHHHHHHHHTTTCHHHHHHHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSS----
T ss_pred CCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC----
T ss_conf 7767773579999999985598999999986999888877799999999999968476999999999999984988----
Q ss_pred CCCEEECCCCHHHHHCCCHHHHHHCCCCCC-CCCCC
Q ss_conf 683111299888882489998977798712-24456
Q 027832 183 EGFEFHEFPSLERLSLVSEVELRNAGFGYR-CFAIK 217 (218)
Q Consensus 183 ~g~~~y~FPtpe~La~~~ee~Lr~~glGyR-A~yI~ 217 (218)
+.|||||+|+++++++||.|||++| |+||.
T Consensus 93 -----~~fPtpe~la~~~~e~Lr~~Gl~~~Ka~~l~ 123 (232)
T 4b21_A 93 -----DEFPTPKQIMETDVETLHECGFSKLKSQEIH 123 (232)
T ss_dssp -----SSCCCHHHHHTSCHHHHHTTTCCHHHHHHHH
T ss_pred -----CCCCCHHHHHCCCHHHHHHCCCCHHHHHHHH
T ss_conf -----7899999998699999988699699999999
No 6
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=133.22 Aligned_cols=93 Identities=20% Similarity=0.256 Sum_probs=83.9
Q ss_pred CHHHHHHHHHCCCHHHHHHHHHCCCCCCC---CC-CHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCCCCCCCCCEEEC
Q ss_conf 96889977600692389999860994147---99-96799999999730329999999999985-198766666831112
Q 027832 115 SLGELWEGFSASDCRFAELAKYLAGARVL---RQ-DPVECLLQFLCSSNNNIARITKMVDFLAS-LGSHLGNVEGFEFHE 189 (218)
Q Consensus 115 dl~~~~~~~~~~D~~l~~~~~~~~GlRil---rq-dpfE~LisfI~sqn~nI~rI~~mi~rL~~-~G~~i~~~~g~~~y~ 189 (218)
|+.++++++.+.||.|+.+++.++|+|+. +| ||||+||++|||||+|++++.+++++| . ||. -+.
T Consensus 14 ~~~~~~~~L~~~Dp~l~~li~~~g~~r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg---------~~~ 83 (228)
T 3s6i_A 14 SLTKAEIHLSGLDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISN---------NGQ 83 (228)
T ss_dssp --CHHHHHHHTSCHHHHHHHHHHCSCCCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSG---------GGS
T ss_pred HHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHCC---------CCC
T ss_conf 79999999986695999999986999777777769999999999996737799999999999-98469---------878
Q ss_pred CCCHHHHHCCCHHHHHHCCCCCC-CCCCC
Q ss_conf 99888882489998977798712-24456
Q 027832 190 FPSLERLSLVSEVELRNAGFGYR-CFAIK 217 (218)
Q Consensus 190 FPtpe~La~~~ee~Lr~~glGyR-A~yI~ 217 (218)
||||++|+++++++||.|||++| |+||.
T Consensus 84 fPtp~~la~~~~e~Lr~~G~~~rKa~~i~ 112 (228)
T 3s6i_A 84 FPTPEEIRDMDFEIMRACGFSARKIDSLK 112 (228)
T ss_dssp CCCHHHHHHSCHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHCCCHHHHHHCCCCHHHHHHHH
T ss_conf 99999997699999988589789999999
No 7
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=1.00 E-value=1 Score=126.95 Aligned_cols=97 Identities=13% Similarity=0.102 Sum_probs=88.1
Q ss_pred HHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCC-CC-CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCCCCCCCC
Q ss_conf 654058996889977600692389999860994-14-7999679999999973032999999999998-51987666668
Q 027832 108 DFLNMGISLGELWEGFSASDCRFAELAKYLAGA-RV-LRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEG 184 (218)
Q Consensus 108 ~yf~Ld~dl~~~~~~~~~~D~~l~~~~~~~~Gl-Ri-lrqdpfE~LisfI~sqn~nI~rI~~mi~rL~-~~G~~i~~~~g 184 (218)
....-+.++.+.++++...|+.++.+++.++|+ +. .++||||+||++|||||++++++.+++++|+ .||.
T Consensus 20 ~~~~~~~~~~~~~~~l~~~D~~l~~l~~~~~~~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~------- 92 (225)
T 2yg9_A 20 PAVLPPLTDHAGAVAHLSRDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGG------- 92 (225)
T ss_dssp CCCCCCCSCSHHHHHHHTTSHHHHHHHHHHCCCCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTC-------
T ss_pred CCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-------
T ss_conf 5679815699999999850979999999869987788789999999999996857499999999999998586-------
Q ss_pred CEEECCCCHHHHHCCCHHHHHHCCCCC-CCCCCC
Q ss_conf 311129988888248999897779871-224456
Q 027832 185 FEFHEFPSLERLSLVSEVELRNAGFGY-RCFAIK 217 (218)
Q Consensus 185 ~~~y~FPtpe~La~~~ee~Lr~~glGy-RA~yI~ 217 (218)
|+||+|+++++++||.|||++ ||+||.
T Consensus 93 ------ptp~~la~~~~e~Lr~~G~~~~KA~~i~ 120 (225)
T 2yg9_A 93 ------VVPAALLKVSGDDLRGVGLSWAKVRTVQ 120 (225)
T ss_dssp ------SCHHHHTTSCHHHHHHTTCCHHHHHHHH
T ss_pred ------CCHHHHHCCCHHHHHHCCCCHHHHHHHH
T ss_conf ------9999997699999988799589999999
No 8
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=1.00 E-value=1 Score=124.11 Aligned_cols=96 Identities=18% Similarity=0.272 Sum_probs=84.4
Q ss_pred HHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCCCCCCCCC
Q ss_conf 65405899688997760069238999986099414-7999679999999973032999999999998-519876666683
Q 027832 108 DFLNMGISLGELWEGFSASDCRFAELAKYLAGARV-LRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGF 185 (218)
Q Consensus 108 ~yf~Ld~dl~~~~~~~~~~D~~l~~~~~~~~GlRi-lrqdpfE~LisfI~sqn~nI~rI~~mi~rL~-~~G~~i~~~~g~ 185 (218)
+||+.+ ...++++...|+.++.+++.++|+|. ..+||||+||++|+|||++++++.+++.+|+ .||..
T Consensus 14 ~~~~~~---~~~~~~l~~~d~~l~~l~~~~~~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~------- 83 (233)
T 2h56_A 14 RYFSTD---SPEVKTIVAQDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGA------- 83 (233)
T ss_dssp EEECTT---SHHHHHHHTTCHHHHHHHHHHCCEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSC-------
T ss_pred HHHHHH---HHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC-------
T ss_conf 876307---9999999823989999999859997888899999999999909777999999999999981899-------
Q ss_pred EEECCCCHHHHHCCCHHHHHHCCCCCC-CCCCC
Q ss_conf 111299888882489998977798712-24456
Q 027832 186 EFHEFPSLERLSLVSEVELRNAGFGYR-CFAIK 217 (218)
Q Consensus 186 ~~y~FPtpe~La~~~ee~Lr~~glGyR-A~yI~ 217 (218)
||||++|+++++++||.|||++| |+||.
T Consensus 84 ----fPtp~~la~~~~e~Lr~~G~~~~KA~~I~ 112 (233)
T 2h56_A 84 ----LEKPEQLYRVSDEALRQAGVSKRKIEYIR 112 (233)
T ss_dssp ----CCCTHHHHTSCHHHHHHTTCCHHHHHHHH
T ss_pred ----CCCHHHHHCCCHHHHHHCCCCHHHHHHHH
T ss_conf ----99999997499999988699789999999
No 9
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=1.00 E-value=1 Score=85.56 Aligned_cols=76 Identities=21% Similarity=0.300 Sum_probs=61.9
Q ss_pred HHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHCCCHHH--
Q ss_conf 2389999860994--147999679999999973032999999999998519876666683111299888882489998--
Q 027832 128 CRFAELAKYLAGA--RVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVE-- 203 (218)
Q Consensus 128 ~~l~~~~~~~~Gl--RilrqdpfE~LisfI~sqn~nI~rI~~mi~rL~~~G~~i~~~~g~~~y~FPtpe~La~~~ee~-- 203 (218)
..+..+.+.+++. ++..+||||.||++|+|||++++++.++..+|. ..||||++|+++++++
T Consensus 12 ~i~~~L~~~y~~~~~~l~~~~pfe~Lv~~IlsQqts~~~v~~~~~~l~--------------~~fpt~~~la~a~~~~l~ 77 (226)
T 1orn_A 12 YCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLF--------------EKYRTPHDYIAVPLEELE 77 (226)
T ss_dssp HHHHHHHHHCTTCCCCSCCSSHHHHHHHHHHHTTSCHHHHHHHHHHHH--------------HHCCSHHHHHSSCHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH--------------HHCCCHHHHHCCCHHHHH
T ss_conf 999999987676677787799899999999958786999999999999--------------987899999859999999
Q ss_pred --HHHCCCC-CCCCCCC
Q ss_conf --9777987-1224456
Q 027832 204 --LRNAGFG-YRCFAIK 217 (218)
Q Consensus 204 --Lr~~glG-yRA~yI~ 217 (218)
+|.+||+ .||+||.
T Consensus 78 ~~i~~~G~~~~KA~~l~ 94 (226)
T 1orn_A 78 QDIRSIGLYRNKARNIQ 94 (226)
T ss_dssp HHTGGGSSHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHH
T ss_conf 99997699199999999
No 10
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=1.00 E-value=1 Score=83.28 Aligned_cols=76 Identities=13% Similarity=0.059 Sum_probs=60.4
Q ss_pred HHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHCCCHHHHH
Q ss_conf 2389999860994--14799967999999997303299999999999851987666668311129988888248999897
Q 027832 128 CRFAELAKYLAGA--RVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELR 205 (218)
Q Consensus 128 ~~l~~~~~~~~Gl--RilrqdpfE~LisfI~sqn~nI~rI~~mi~rL~~~G~~i~~~~g~~~y~FPtpe~La~~~ee~Lr 205 (218)
+.++.+.+.+++. .+..+||||.||++|+|||++++++.++..+|. ..||||++|+++++++|.
T Consensus 8 ~i~~~L~~~~~~~~~~~~~~~pfe~lv~~Il~qqts~~~v~~~~~~l~--------------~~fpt~~~la~a~~~~l~ 73 (211)
T 2abk_A 8 EILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLY--------------PVANTPAAMLELGVEGVK 73 (211)
T ss_dssp HHHHHHHHHCSSCCCSSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHHT--------------TTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH--------------HHCCCHHHHHCCCHHHHH
T ss_conf 999999988577776777799899999999967788999999999999--------------987899999877999999
Q ss_pred H----CCCC-CCCCCCC
Q ss_conf 7----7987-1224456
Q 027832 206 N----AGFG-YRCFAIK 217 (218)
Q Consensus 206 ~----~glG-yRA~yI~ 217 (218)
+ +||. .||+||.
T Consensus 74 ~~i~~~G~~~~KA~~l~ 90 (211)
T 2abk_A 74 TYIKTIGLYNSKAENII 90 (211)
T ss_dssp HHHTTSTTHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHH
T ss_conf 99998699769999999
Done!