RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 027832
         (218 letters)



>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 124

 Score =  111 bits (280), Expect = 2e-32
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 7/117 (5%)

Query: 35  PSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIH 94
           P+ W  +   +SEL L L  P+GQ+FRW++  P  ++G +   + +L       +   ++
Sbjct: 9   PALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQ-TEEQLHCTVY 67

Query: 95  ------TSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQ 145
                  S   P    A+  +  + ++L +L+  + + D  F E+A+   G R+LRQ
Sbjct: 68  RGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 124


>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 190

 Score = 56.7 bits (136), Expect = 1e-10
 Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 146 DPVECLLQFLCSSNNNIARITKMVDFLAS-LGSHLGNVEGFEFHEFPSLERLSLVS-EVE 203
           DP+ECL  F+CSSNNNIARIT MV+ L    G  L  ++   +H FPSL+ L+    E  
Sbjct: 1   DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAH 60

Query: 204 LRNAGFGYRCFAIK 217
           LR  G GYR   + 
Sbjct: 61  LRKLGLGYRARYVS 74


>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II
           (gene alkA or aidA) {Escherichia coli [TaxId: 562]}
          Length = 183

 Score = 44.0 bits (103), Expect = 3e-06
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 139 GARVLRQ-DPVECLLQFLCSSNNNIARITKMVD-FLASLGSHLGNVEGFEFHEFPSLERL 196
           G R+    D  E  ++ +     ++A   K+        G  L +    E+  FP+ +RL
Sbjct: 5   GLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDD--FPEYICFPTPQRL 62

Query: 197 SLVSEVELRNAGFGYR 212
           +      L+  G   +
Sbjct: 63  AAADPQALKALGMPLK 78


>d2i7na1 c.55.1.14 (A:236-381) Pantothenate kinase 1, PANK1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 146

 Score = 26.8 bits (59), Expect = 1.3
 Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 129 RFAELAKYLAGARVLRQDPVECL---LQFLCSSNNN 161
           +F E  + +A  ++ + D ++CL   L ++ S   N
Sbjct: 110 KFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFN 145


>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
           [TaxId: 375]}
          Length = 412

 Score = 25.9 bits (55), Expect = 5.0
 Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 16  LTPQPPPTPPNPQTLTTNKPSKWTPLNLT-QSELSLPLTFPTG 57
           LT   P T P     +T  P       L     +++P+    G
Sbjct: 340 LTYSAPGTAPAKALASTGDPRYNRLWTLMGNPCVNVPVLKVGG 382


>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain
          {Physarum polycephalum [TaxId: 5791]}
          Length = 342

 Score = 25.6 bits (56), Expect = 5.5
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 21 PPTPPNPQTLTTNKPSKWTPLNLTQSELSLPLTFPTGQTFRWKK 64
          P  P  PQ     KPSKW P    + +LS  +++       WK 
Sbjct: 28 PAKPKVPQ----KKPSKWDPPAEFKVDLSTAVSYNDIGDINWKN 67


>d1j7xa_ c.14.1.2 (A:) Interphotoreceptor retinoid-binding protein
          IRBP {African clawed frog (Xenopus laevis) [TaxId:
          8355]}
          Length = 302

 Score = 25.0 bits (54), Expect = 7.8
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 4  LKNSPSPLKRPRLTPQPPPTPPNPQTL 30
          LK+    L  P  + Q    P +   L
Sbjct: 65 LKSKTDTLVMPGDSIQAENIPEDEAML 91


>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 93

 Score = 23.9 bits (51), Expect = 8.1
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 8  PSPLKRPRLTPQPPPTPPNPQTLTTNKPS 36
          PS      ++P+    PP      T+ PS
Sbjct: 63 PSSENEKAVSPKKALLPPTVSLSATSGPS 91


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 803,242
Number of extensions: 34973
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 10
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)