BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027833
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
Query: 49 FADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALPRLFVASFTLVLPFF 106
F+DG + I ++RG+ V L S +P + E + ++ AL R T +P+F
Sbjct: 39 FSDGEIQVEIQ--ENVRGKDVFVLQSTCAPTNDNLMELMIMVDALKRASAGRITAAIPYF 96
Query: 107 PTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFE 166
+R VA + A++++N+ G ++ D+HA Q + +F V ++
Sbjct: 97 GYARQDRRPRSARVAIS---AKVVANM-LEIAGVERIITMDLHADQIQGFFDIPVDNIYA 152
Query: 167 TGIPLLKQRLHQLPD 181
T I L R PD
Sbjct: 153 TPILLGDLRKQNYPD 167
>pdb|2JI4|A Chain A, Human Phosphoribosylpyrophosphate Synthetase - Associated
Protein 41 (Pap41)
Length = 379
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 76/163 (46%), Gaps = 14/163 (8%)
Query: 25 CEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIF 82
C EL++K+A + + ++ + + + + +RG+ V + + S I
Sbjct: 41 CMELSKKIAER---LGVEMGKVQVYQEPNRETRVQIQESVRGKDVFIIQTVSKDVNTTIM 97
Query: 83 EQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTS 142
E + ++YA S V+P+FP +M + G + ++++L+++ + G T
Sbjct: 98 ELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSI-----VSKLLASM-MCKAGLTH 151
Query: 143 LVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLH-QLPDANN 184
L+ D+H + + +F+ V L + P L Q + ++PD N
Sbjct: 152 LITMDLHQKEIQGFFNIPVDNLRAS--PFLLQYIQEEIPDYRN 192
>pdb|2C4K|A Chain A, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|B Chain B, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|C Chain C, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|D Chain D, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|E Chain E, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|F Chain F, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
Length = 370
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 65/136 (47%), Gaps = 11/136 (8%)
Query: 25 CEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIF 82
C ELA+++ + +S+ ++ +G + I + +RGQ + + + +
Sbjct: 38 CTELAKRITERLGAELGKSVVYQE-TNGETRVEIKES--VRGQDIFIIQTIPRDVNTAVM 94
Query: 83 EQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTS 142
E + + YAL + V+P+FP +M + G + + ++L+++ ++ G T
Sbjct: 95 ELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSI-----VCKLLASM-LAKAGLTH 148
Query: 143 LVIYDIHALQERFYFS 158
++ D+H + + +FS
Sbjct: 149 IITMDLHQKEIQGFFS 164
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 82 FEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPT 141
F+ I I+ P F ++ +V PF + ER+ GD + F + +P+ GG
Sbjct: 234 FKAIHFIHQ-PWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGG-- 290
Query: 142 SLVIYDIHALQERFY 156
+L YD A+ E+ +
Sbjct: 291 TLPKYDGKAVAEQLF 305
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 82 FEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPT 141
F+ I I+ P F ++ +V PF + ER+ GD + F + +P+ GG
Sbjct: 234 FKAIHFIHQ-PWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGG-- 290
Query: 142 SLVIYDIHALQERFY 156
+L YD A+ E+ +
Sbjct: 291 TLPKYDGKAVAEQLF 305
>pdb|3TQ6|A Chain A, Crystal Structure Of Human Mitochondrial Transcription
Factor A, Tfam Or Mttfa, Bound To The Light Strand
Promoter Lsp
pdb|3TQ6|B Chain B, Crystal Structure Of Human Mitochondrial Transcription
Factor A, Tfam Or Mttfa, Bound To The Light Strand
Promoter Lsp
Length = 214
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 21 YCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHD 63
Y E + A+ + Q L T++ NW+N +D LYI A +
Sbjct: 125 YVAERFQEAKGDSPQEKLKTVKE-NWKNLSDSEKELYIQHAKE 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,200,575
Number of Sequences: 62578
Number of extensions: 240064
Number of successful extensions: 607
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 12
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)