Query 027833
Match_columns 218
No_of_seqs 104 out of 1132
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 15:54:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0462 PrsA Phosphoribosylpyr 100.0 1.1E-59 2.3E-64 421.0 20.7 187 14-210 2-190 (314)
2 PRK00553 ribose-phosphate pyro 100.0 1.1E-54 2.3E-59 394.3 20.8 187 11-207 4-192 (332)
3 PRK02812 ribose-phosphate pyro 100.0 5.4E-54 1.2E-58 389.3 20.9 185 12-207 17-203 (330)
4 PLN02297 ribose-phosphate pyro 100.0 6.9E-54 1.5E-58 387.7 21.5 192 11-202 11-202 (326)
5 PRK02458 ribose-phosphate pyro 100.0 7.4E-54 1.6E-58 387.5 20.8 186 12-207 5-193 (323)
6 PRK04923 ribose-phosphate pyro 100.0 6.7E-54 1.5E-58 387.2 20.4 183 14-206 4-189 (319)
7 PRK02269 ribose-phosphate pyro 100.0 6.1E-54 1.3E-58 387.6 19.8 183 15-207 4-189 (320)
8 PTZ00145 phosphoribosylpyropho 100.0 1.5E-53 3.2E-58 396.8 20.6 182 15-207 118-303 (439)
9 PRK07199 phosphoribosylpyropho 100.0 9.5E-53 2.1E-57 377.0 20.0 181 16-209 2-186 (301)
10 PRK01259 ribose-phosphate pyro 100.0 2E-52 4.3E-57 376.1 19.4 180 17-207 1-182 (309)
11 PRK03092 ribose-phosphate pyro 100.0 5.1E-52 1.1E-56 372.8 18.0 169 28-206 1-171 (304)
12 PRK00934 ribose-phosphate pyro 100.0 2.2E-51 4.8E-56 365.4 19.1 178 18-208 1-179 (285)
13 TIGR01251 ribP_PPkin ribose-ph 100.0 6.6E-51 1.4E-55 365.8 19.9 180 17-207 1-183 (308)
14 PRK06827 phosphoribosylpyropho 100.0 2.2E-50 4.7E-55 371.5 20.9 186 12-208 4-232 (382)
15 KOG1448 Ribose-phosphate pyrop 100.0 2.1E-50 4.6E-55 356.3 16.8 187 14-210 1-190 (316)
16 PLN02369 ribose-phosphate pyro 100.0 7.8E-50 1.7E-54 358.3 18.8 171 27-207 2-175 (302)
17 KOG1503 Phosphoribosylpyrophos 100.0 3E-41 6.5E-46 292.1 16.8 190 9-210 2-194 (354)
18 PF13793 Pribosyltran_N: N-ter 100.0 5.6E-41 1.2E-45 263.3 13.0 111 17-131 1-113 (116)
19 TIGR01251 ribP_PPkin ribose-ph 98.8 1.5E-07 3.2E-12 85.0 15.9 137 14-179 159-297 (308)
20 PRK07199 phosphoribosylpyropho 97.6 0.0046 1E-07 55.9 16.1 132 14-179 160-293 (301)
21 PRK03092 ribose-phosphate pyro 97.5 0.0063 1.4E-07 55.2 16.4 139 14-179 148-290 (304)
22 PRK00934 ribose-phosphate pyro 97.5 0.0045 9.7E-08 55.5 14.9 128 15-177 155-284 (285)
23 PRK04923 ribose-phosphate pyro 97.5 0.0067 1.4E-07 55.4 15.6 141 14-179 166-307 (319)
24 PRK02269 ribose-phosphate pyro 97.3 0.012 2.6E-07 53.7 15.1 141 14-179 165-306 (320)
25 PRK13811 orotate phosphoribosy 97.3 0.00055 1.2E-08 56.8 5.9 76 124-207 3-80 (170)
26 PRK02458 ribose-phosphate pyro 97.3 0.01 2.2E-07 54.3 14.4 137 15-179 170-306 (323)
27 PLN02369 ribose-phosphate pyro 97.1 0.022 4.8E-07 51.5 15.2 135 17-179 154-291 (302)
28 COG0462 PrsA Phosphoribosylpyr 97.1 0.02 4.3E-07 52.3 13.8 136 16-179 164-303 (314)
29 PRK01259 ribose-phosphate pyro 97.0 0.03 6.5E-07 50.8 15.1 139 15-179 159-298 (309)
30 PTZ00145 phosphoribosylpyropho 96.9 0.035 7.5E-07 52.9 14.4 136 17-179 282-425 (439)
31 PRK00553 ribose-phosphate pyro 96.8 0.049 1.1E-06 50.0 14.3 142 15-179 168-311 (332)
32 PRK02812 ribose-phosphate pyro 96.8 0.067 1.4E-06 49.2 14.9 137 16-179 181-319 (330)
33 PRK06827 phosphoribosylpyropho 96.7 0.069 1.5E-06 50.1 14.8 141 15-179 208-357 (382)
34 PRK15423 hypoxanthine phosphor 95.6 0.26 5.7E-06 41.3 11.4 87 14-103 34-127 (178)
35 PRK09162 hypoxanthine-guanine 95.3 0.25 5.4E-06 41.3 10.3 86 15-103 41-132 (181)
36 PLN02501 digalactosyldiacylgly 94.5 0.7 1.5E-05 46.9 12.7 164 19-206 281-460 (794)
37 TIGR01203 HGPRTase hypoxanthin 94.3 1.1 2.5E-05 36.8 11.8 85 15-103 27-119 (166)
38 PLN02238 hypoxanthine phosphor 94.3 1 2.2E-05 38.0 11.6 95 4-103 25-132 (189)
39 PLN02297 ribose-phosphate pyro 94.3 2 4.3E-05 39.6 14.3 127 29-177 195-325 (326)
40 COG0634 Hpt Hypoxanthine-guani 93.2 1.6 3.6E-05 36.8 10.9 82 12-102 32-127 (178)
41 PF14572 Pribosyl_synth: Phosp 92.0 0.59 1.3E-05 39.7 6.8 97 58-178 75-172 (184)
42 PTZ00149 hypoxanthine phosphor 91.9 2.7 5.9E-05 37.1 11.0 94 4-103 71-185 (241)
43 PRK00129 upp uracil phosphorib 91.8 1.6 3.5E-05 37.2 9.4 86 16-104 72-160 (209)
44 PLN02440 amidophosphoribosyltr 91.3 2.3 5E-05 41.0 10.8 123 15-150 276-422 (479)
45 TIGR01091 upp uracil phosphori 89.4 3 6.5E-05 35.6 8.9 83 19-104 73-158 (207)
46 PRK08525 amidophosphoribosyltr 89.3 2.5 5.3E-05 40.4 9.1 88 15-105 276-377 (445)
47 PTZ00271 hypoxanthine-guanine 89.2 6.3 0.00014 34.1 10.8 85 16-103 59-154 (211)
48 PRK05205 bifunctional pyrimidi 88.9 5.5 0.00012 32.9 9.9 86 15-103 32-131 (176)
49 TIGR01367 pyrE_Therm orotate p 88.8 11 0.00023 31.7 11.7 77 14-99 58-136 (187)
50 TIGR01090 apt adenine phosphor 88.7 3.7 8E-05 33.6 8.7 82 16-101 48-142 (169)
51 PRK00455 pyrE orotate phosphor 87.9 5.6 0.00012 33.5 9.6 81 14-100 64-145 (202)
52 PRK07272 amidophosphoribosyltr 87.7 3.9 8.5E-05 39.6 9.4 117 23-150 294-432 (484)
53 PRK02304 adenine phosphoribosy 87.2 7.4 0.00016 32.0 9.6 80 16-99 53-145 (175)
54 PRK13811 orotate phosphoribosy 86.5 5.9 0.00013 32.7 8.7 83 17-107 59-142 (170)
55 PRK09123 amidophosphoribosyltr 86.1 11 0.00023 36.5 11.4 121 17-148 298-440 (479)
56 PF00156 Pribosyltran: Phospho 85.5 13 0.00029 27.8 11.1 84 17-104 30-124 (125)
57 TIGR01203 HGPRTase hypoxanthin 85.0 1.2 2.6E-05 36.6 3.9 39 169-207 12-50 (166)
58 PRK08341 amidophosphoribosyltr 84.5 6.2 0.00014 37.7 8.9 84 16-103 273-369 (442)
59 PRK05793 amidophosphoribosyltr 84.5 4.5 9.9E-05 38.9 8.0 86 16-104 290-389 (469)
60 PRK09162 hypoxanthine-guanine 84.4 1.9 4.2E-05 35.9 4.8 40 168-207 25-64 (181)
61 PRK02277 orotate phosphoribosy 83.7 9.3 0.0002 32.3 8.8 84 16-103 87-175 (200)
62 PLN02293 adenine phosphoribosy 83.7 17 0.00037 30.6 10.3 83 16-102 64-159 (187)
63 PRK13812 orotate phosphoribosy 82.6 7.8 0.00017 32.3 7.8 77 16-99 60-138 (176)
64 PF01012 ETF: Electron transfe 81.9 16 0.00036 29.2 9.3 103 79-210 15-118 (164)
65 TIGR00336 pyrE orotate phospho 81.9 11 0.00023 31.1 8.3 77 23-106 63-145 (173)
66 TIGR01134 purF amidophosphorib 80.5 17 0.00037 34.6 10.2 112 23-149 282-419 (442)
67 COG2236 Predicted phosphoribos 80.1 14 0.0003 31.6 8.5 73 4-78 20-99 (192)
68 PRK14093 UDP-N-acetylmuramoyla 76.3 26 0.00056 33.4 10.1 146 29-191 299-452 (479)
69 PF01380 SIS: SIS domain SIS d 75.8 2.2 4.8E-05 32.2 2.3 82 13-101 4-86 (131)
70 PRK09246 amidophosphoribosyltr 75.7 15 0.00032 35.7 8.4 121 19-150 297-440 (501)
71 PRK09177 xanthine-guanine phos 74.8 27 0.00058 28.4 8.6 62 14-78 31-96 (156)
72 cd05008 SIS_GlmS_GlmD_1 SIS (S 73.5 12 0.00027 28.1 6.0 78 17-101 2-79 (126)
73 PRK06781 amidophosphoribosyltr 72.8 16 0.00034 35.3 7.7 83 18-103 286-383 (471)
74 cd05014 SIS_Kpsf KpsF-like pro 72.6 19 0.00041 27.2 6.9 78 16-101 2-80 (128)
75 PRK07847 amidophosphoribosyltr 72.5 22 0.00047 34.7 8.7 121 18-149 305-448 (510)
76 PRK07631 amidophosphoribosyltr 70.5 22 0.00048 34.4 8.2 83 18-103 286-383 (475)
77 PRK07322 adenine phosphoribosy 70.5 7.5 0.00016 32.3 4.4 57 150-208 17-77 (178)
78 PRK07322 adenine phosphoribosy 68.9 63 0.0014 26.7 9.7 93 16-113 54-164 (178)
79 PRK07349 amidophosphoribosyltr 67.2 28 0.00061 33.9 8.2 76 24-103 322-412 (500)
80 PRK12560 adenine phosphoribosy 65.1 79 0.0017 26.4 9.6 73 23-99 60-145 (187)
81 cd05013 SIS_RpiR RpiR-like pro 65.0 13 0.00029 27.8 4.5 79 14-99 13-91 (139)
82 PRK03803 murD UDP-N-acetylmura 64.8 43 0.00093 31.3 8.7 142 28-196 280-427 (448)
83 COG0034 PurF Glutamine phospho 64.2 31 0.00068 33.4 7.6 116 23-150 292-430 (470)
84 PRK11595 DNA utilization prote 64.2 14 0.00031 31.7 5.0 73 26-102 135-221 (227)
85 PRK11070 ssDNA exonuclease Rec 63.3 39 0.00083 33.5 8.4 74 65-153 68-141 (575)
86 cd05009 SIS_GlmS_GlmD_2 SIS (S 62.9 27 0.00058 27.0 6.0 83 14-101 13-95 (153)
87 PRK08558 adenine phosphoribosy 62.5 63 0.0014 28.2 8.8 79 16-99 113-207 (238)
88 PF05124 S_layer_C: S-layer li 62.4 27 0.00059 30.5 6.4 56 13-78 153-209 (222)
89 cd05710 SIS_1 A subgroup of th 61.9 17 0.00037 27.8 4.6 77 18-101 3-80 (120)
90 PRK15482 transcriptional regul 61.9 12 0.00026 32.9 4.2 81 13-101 134-215 (285)
91 PRK13812 orotate phosphoribosy 60.2 22 0.00048 29.5 5.3 38 169-207 45-82 (176)
92 PRK13809 orotate phosphoribosy 59.5 75 0.0016 27.2 8.6 70 25-99 78-149 (206)
93 PRK15423 hypoxanthine phosphor 59.2 18 0.00039 30.2 4.6 39 169-207 18-58 (178)
94 TIGR00644 recJ single-stranded 59.1 44 0.00095 32.6 7.9 71 67-153 55-125 (539)
95 TIGR01564 S_layer_MJ S-layer p 57.8 24 0.00051 35.0 5.7 57 13-78 502-558 (571)
96 TIGR00393 kpsF KpsF/GutQ famil 56.5 32 0.00069 29.5 5.9 79 16-101 2-80 (268)
97 TIGR01143 murF UDP-N-acetylmur 56.1 79 0.0017 29.3 8.8 132 28-188 261-402 (417)
98 PRK08105 flavodoxin; Provision 55.3 92 0.002 24.9 8.0 111 15-144 2-120 (149)
99 PRK11557 putative DNA-binding 54.6 20 0.00043 31.2 4.3 81 13-101 127-208 (278)
100 PRK11337 DNA-binding transcrip 53.9 23 0.0005 31.1 4.7 82 13-101 139-220 (292)
101 COG0856 Orotate phosphoribosyl 51.6 65 0.0014 27.6 6.7 71 23-100 95-173 (203)
102 PRK02006 murD UDP-N-acetylmura 51.3 86 0.0019 29.9 8.4 138 28-196 327-471 (498)
103 PRK06388 amidophosphoribosyltr 49.8 94 0.002 30.1 8.4 82 19-103 295-391 (474)
104 PRK05205 bifunctional pyrimidi 49.8 32 0.00069 28.3 4.6 39 169-207 16-55 (176)
105 PLN02293 adenine phosphoribosy 46.9 26 0.00055 29.5 3.6 36 169-207 51-86 (187)
106 cd01985 ETF The electron trans 46.9 1.5E+02 0.0034 23.9 9.7 98 82-210 22-119 (181)
107 PF08410 DUF1737: Domain of un 46.4 58 0.0013 22.3 4.6 38 15-52 4-42 (54)
108 cd03522 MoeA_like MoeA_like. T 45.8 29 0.00063 31.7 4.1 44 97-149 6-49 (312)
109 TIGR00336 pyrE orotate phospho 45.5 28 0.0006 28.6 3.6 27 182-208 53-79 (173)
110 TIGR01367 pyrE_Therm orotate p 44.8 37 0.00081 28.4 4.3 36 171-207 47-82 (187)
111 PF00156 Pribosyltran: Phospho 44.6 24 0.00052 26.4 2.9 41 169-210 14-54 (125)
112 KOG1448 Ribose-phosphate pyrop 44.0 87 0.0019 28.8 6.7 145 6-179 154-303 (316)
113 PRK02304 adenine phosphoribosy 43.4 26 0.00057 28.7 3.2 27 183-209 51-77 (175)
114 TIGR02990 ectoine_eutA ectoine 43.0 14 0.00031 32.3 1.5 91 15-107 8-131 (239)
115 cd05017 SIS_PGI_PMI_1 The memb 42.4 1.2E+02 0.0026 22.8 6.6 36 63-101 40-76 (119)
116 cd05005 SIS_PHI Hexulose-6-pho 42.2 1.5E+02 0.0032 24.0 7.5 75 14-101 33-108 (179)
117 PRK11382 frlB fructoselysine-6 42.1 53 0.0011 29.9 5.2 82 14-101 44-125 (340)
118 TIGR01090 apt adenine phosphor 41.4 30 0.00064 28.2 3.1 36 169-207 35-70 (169)
119 PF06574 FAD_syn: FAD syntheta 41.2 31 0.00066 28.2 3.2 70 119-206 60-137 (157)
120 PRK02259 aspartoacylase; Provi 41.2 1.5E+02 0.0032 26.5 7.8 27 67-93 3-34 (288)
121 PRK11543 gutQ D-arabinose 5-ph 40.5 80 0.0017 28.0 6.0 78 15-99 43-120 (321)
122 TIGR03127 RuMP_HxlB 6-phospho 40.4 1.6E+02 0.0034 23.7 7.3 76 13-101 29-105 (179)
123 PRK08564 5'-methylthioadenosin 40.0 20 0.00043 32.0 2.0 76 14-102 7-90 (267)
124 cd04795 SIS SIS domain. SIS (S 39.8 64 0.0014 22.2 4.3 77 19-102 3-81 (87)
125 PLN02238 hypoxanthine phosphor 39.8 41 0.00089 28.2 3.8 40 169-208 21-60 (189)
126 COG2185 Sbm Methylmalonyl-CoA 39.5 87 0.0019 25.6 5.5 56 68-145 65-121 (143)
127 PF02633 Creatininase: Creatin 39.3 82 0.0018 27.0 5.8 68 79-151 38-111 (237)
128 COG0461 PyrE Orotate phosphori 38.7 2.5E+02 0.0055 24.1 8.5 76 16-96 61-140 (201)
129 PRK12560 adenine phosphoribosy 38.6 48 0.001 27.7 4.1 26 181-206 49-74 (187)
130 TIGR02128 G6PI_arch bifunction 38.5 3E+02 0.0065 24.9 13.6 78 14-103 21-100 (308)
131 COG1737 RpiR Transcriptional r 37.2 41 0.00088 29.8 3.6 80 14-101 130-210 (281)
132 PF14681 UPRTase: Uracil phosp 35.4 2.7E+02 0.0059 23.5 10.3 84 16-102 68-157 (207)
133 smart00166 UBX Domain present 35.4 1.2E+02 0.0026 21.4 5.2 32 74-105 20-51 (80)
134 PF06300 Tsp45I: Tsp45I type I 34.8 3.5 7.7E-05 36.4 -3.4 53 79-144 54-106 (261)
135 TIGR01698 PUNP purine nucleoti 34.6 1.3E+02 0.0029 26.4 6.3 77 17-101 2-88 (237)
136 COG1911 RPL30 Ribosomal protei 33.4 1.1E+02 0.0024 23.5 4.9 47 3-52 24-70 (100)
137 cd06909 M14_ASPA Aspartoacylas 33.3 3.1E+02 0.0067 24.6 8.6 45 144-191 97-142 (282)
138 PRK03815 murD UDP-N-acetylmura 33.1 4.1E+02 0.0089 24.8 10.0 137 29-195 240-381 (401)
139 PRK08202 purine nucleoside pho 32.2 87 0.0019 27.8 4.9 81 13-101 20-110 (272)
140 TIGR00201 comF comF family pro 32.2 54 0.0012 27.2 3.4 38 63-102 149-186 (190)
141 cd01715 ETF_alpha The electron 31.1 2.5E+02 0.0054 22.5 7.1 63 137-210 49-111 (168)
142 PRK00455 pyrE orotate phosphor 31.0 95 0.0021 26.0 4.7 36 171-207 53-88 (202)
143 PRK08659 2-oxoglutarate ferred 30.9 2.3E+02 0.0049 26.4 7.6 65 66-152 273-337 (376)
144 cd02986 DLP Dim1 family, Dim1- 30.2 2E+02 0.0044 22.5 6.0 63 141-218 14-78 (114)
145 PRK10628 LigB family dioxygena 29.9 24 0.00053 31.2 0.9 16 21-36 65-80 (246)
146 COG3608 Predicted deacylase [G 29.5 1.7E+02 0.0036 27.2 6.3 44 65-108 47-92 (331)
147 KOG3367 Hypoxanthine-guanine p 28.9 2.1E+02 0.0045 24.6 6.2 88 9-99 54-156 (216)
148 PF04914 DltD_C: DltD C-termin 28.9 88 0.0019 25.0 3.9 66 79-158 33-105 (130)
149 cd02957 Phd_like Phosducin (Ph 28.7 2.3E+02 0.0049 21.0 6.0 78 120-218 8-86 (113)
150 PRK02472 murD UDP-N-acetylmura 28.1 4.5E+02 0.0097 24.3 9.1 135 27-192 281-421 (447)
151 PLN00022 electron transfer fla 28.1 5E+02 0.011 24.2 11.6 117 64-210 24-145 (356)
152 TIGR02026 BchE magnesium-proto 28.0 5E+02 0.011 24.9 9.6 95 98-214 1-95 (497)
153 TIGR01699 XAPA xanthosine phos 27.8 1.1E+02 0.0024 27.0 4.7 105 17-132 2-116 (248)
154 PRK13810 orotate phosphoribosy 27.8 3.6E+02 0.0079 22.5 8.6 74 25-107 84-160 (187)
155 PRK09271 flavodoxin; Provision 27.3 3.2E+02 0.0069 21.7 8.2 69 17-89 3-79 (160)
156 cd05006 SIS_GmhA Phosphoheptos 26.5 1.8E+02 0.004 23.4 5.5 84 14-101 33-134 (177)
157 PRK13809 orotate phosphoribosy 26.1 91 0.002 26.6 3.8 27 182-208 66-92 (206)
158 COG0486 ThdF Predicted GTPase 25.8 1.7E+02 0.0038 28.3 5.9 68 17-86 21-100 (454)
159 COG3473 Maleate cis-trans isom 25.1 44 0.00095 29.4 1.6 22 86-107 108-129 (238)
160 TIGR01087 murD UDP-N-acetylmur 25.0 4.5E+02 0.0098 24.2 8.5 136 28-194 271-413 (433)
161 PF00910 RNA_helicase: RNA hel 25.0 2.8E+02 0.0062 20.4 6.0 32 62-93 45-82 (107)
162 PRK08525 amidophosphoribosyltr 24.7 96 0.0021 29.6 4.0 27 182-209 275-301 (445)
163 PRK11916 electron transfer fla 24.6 5.5E+02 0.012 23.5 11.1 102 68-210 6-107 (312)
164 PRK05500 bifunctional orotidin 24.3 3.4E+02 0.0073 26.4 7.6 72 25-103 355-427 (477)
165 cd04724 Tryptophan_synthase_al 24.2 2.2E+02 0.0048 24.6 5.9 26 124-154 94-119 (242)
166 cd07206 Pat_TGL3-4-5_SDP1 Tria 23.5 4.8E+02 0.01 23.8 8.1 42 102-152 193-234 (298)
167 COG0794 GutQ Predicted sugar p 23.4 4.7E+02 0.01 22.5 7.6 80 14-100 39-118 (202)
168 COG1926 Predicted phosphoribos 23.2 1.5E+02 0.0033 26.0 4.5 43 63-107 121-163 (220)
169 PRK09219 xanthine phosphoribos 23.1 4.5E+02 0.0098 22.0 9.6 71 23-97 59-146 (189)
170 PLN03034 phosphoglycerate kina 23.0 7.2E+02 0.016 24.4 9.5 123 63-200 89-233 (481)
171 PF02006 DUF137: Protein of un 23.0 1.1E+02 0.0023 26.0 3.5 84 87-179 49-150 (178)
172 TIGR00083 ribF riboflavin kina 22.9 2.7E+02 0.0059 25.0 6.4 72 120-208 53-131 (288)
173 PRK02277 orotate phosphoribosy 22.7 1.9E+02 0.0042 24.2 5.1 27 183-209 85-111 (200)
174 COG0126 Pgk 3-phosphoglycerate 22.4 3.3E+02 0.0072 25.9 7.0 132 62-210 10-168 (395)
175 PRK00129 upp uracil phosphorib 22.4 1.3E+02 0.0027 25.6 3.9 31 183-213 70-100 (209)
176 KOG2915 tRNA(1-methyladenosine 22.3 2E+02 0.0044 26.4 5.3 42 167-210 190-231 (314)
177 PRK10886 DnaA initiator-associ 22.3 2E+02 0.0043 24.3 5.1 35 64-101 107-142 (196)
178 PF13399 LytR_C: LytR cell env 22.0 3E+02 0.0065 19.5 5.8 22 15-36 43-64 (90)
179 TIGR00262 trpA tryptophan synt 21.8 2.8E+02 0.0061 24.3 6.1 60 124-206 105-164 (256)
180 PRK11930 putative bifunctional 21.4 8.8E+02 0.019 24.8 10.4 157 29-206 294-458 (822)
181 cd00858 GlyRS_anticodon GlyRS 21.1 2.1E+02 0.0045 21.7 4.6 42 55-96 15-56 (121)
182 cd01773 Faf1_like1_UBX Faf1 ik 20.9 2.6E+02 0.0056 20.6 4.8 42 47-105 10-51 (82)
183 cd01528 RHOD_2 Member of the R 20.8 3.2E+02 0.007 19.5 8.0 26 121-152 2-27 (101)
184 COG2065 PyrR Pyrimidine operon 20.7 3.6E+02 0.0078 22.9 6.1 86 13-103 29-132 (179)
185 TIGR02068 cya_phycin_syn cyano 20.6 9.7E+02 0.021 24.9 12.2 96 29-149 691-794 (864)
186 TIGR01743 purR_Bsub pur operon 20.3 6.3E+02 0.014 22.6 8.9 71 22-96 136-222 (268)
187 TIGR03470 HpnH hopanoid biosyn 20.3 1.9E+02 0.0041 26.1 4.8 45 66-111 162-206 (318)
188 PRK08931 5'-methylthioadenosin 20.2 1.1E+02 0.0024 27.7 3.3 74 15-101 4-85 (289)
189 PF01903 CbiX: CbiX; InterPro 20.2 56 0.0012 23.9 1.2 19 89-108 44-62 (105)
190 cd02991 UAS_ETEA UAS family, E 20.1 2.2E+02 0.0049 21.8 4.6 60 141-209 17-76 (116)
No 1
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-59 Score=420.98 Aligned_cols=187 Identities=24% Similarity=0.336 Sum_probs=179.8
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc--hhHHHHHHHHHhc
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYAL 91 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p--d~lmELlll~~al 91 (218)
.++++||+|+++++||++||+.| +++++++++++|||| |+||++.|++||+||||+||+++| |++||||+|+|||
T Consensus 2 ~~~~~if~g~s~~~La~~ia~~l-~~~l~~~~~~rF~DG--E~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~ 78 (314)
T COG0462 2 MNNMKIFSGSSNPELAEKIAKRL-GIPLGKVEVKRFPDG--EIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDAL 78 (314)
T ss_pred CCceEEEECCCCHHHHHHHHHHh-CCCcccceeEEcCCC--cEEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHH
Confidence 46899999999999999999999 999999999999999 999999999999999999999997 8999999999999
Q ss_pred ccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHH
Q 027833 92 PRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPL 171 (218)
Q Consensus 92 r~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~ 171 (218)
|++||+|||+|+||||||||||++++|||+|+|++|+||+ .+|+|+|+|+|+|++|+|+||++|++|+ ++.|.
T Consensus 79 k~asA~~It~ViPY~gYARQDk~~~~repIsaklvA~lL~-----~aG~drv~TvDlH~~qiqgfFdipvdnl--~a~p~ 151 (314)
T COG0462 79 KRASAKRITAVIPYFGYARQDKAFKPREPISAKLVANLLE-----TAGADRVLTVDLHAPQIQGFFDIPVDNL--YAAPL 151 (314)
T ss_pred HhcCCceEEEEeecchhhccCcccCCCCCEeHHHHHHHHH-----HcCCCeEEEEcCCchhhcccCCCccccc--cchHH
Confidence 9999999999999999999999999999999999999999 9999999999999999999999999999 99999
Q ss_pred HHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCcccc
Q 027833 172 LKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRWCVP 210 (218)
Q Consensus 172 l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~~~~ 210 (218)
+++|++...+.+|++|||||.||++||+.+|+.||+.+.
T Consensus 152 l~~~~~~~~~~~d~vVVSPD~Ggv~RAr~~A~~L~~~~a 190 (314)
T COG0462 152 LAEYIREKYDLDDPVVVSPDKGGVKRARALADRLGAPLA 190 (314)
T ss_pred HHHHHHHhcCCCCcEEECCCccHHHHHHHHHHHhCCCEE
Confidence 999998754566799999999999999999999998754
No 2
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.1e-54 Score=394.26 Aligned_cols=187 Identities=24% Similarity=0.299 Sum_probs=178.7
Q ss_pred hcCCCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc--hhHHHHHHHH
Q 027833 11 KSQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVI 88 (218)
Q Consensus 11 ~~~~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p--d~lmELlll~ 88 (218)
+..+++++||+|+++++||++||+.| |++++++++++|||| |+|+++.+++||+||+|+||+++| |++||||+++
T Consensus 4 ~~~~~~~~i~~~~~~~~La~~ia~~l-g~~l~~~~~~~FpdG--E~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~ 80 (332)
T PRK00553 4 SIDKSNHVIFSLSKAKKLVDSICRKL-SMKPGEIVIQKFADG--ETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAI 80 (332)
T ss_pred ccCCCCeEEEECCCCHHHHHHHHHHh-CCceeeeEEEECCCC--CEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHH
Confidence 35678999999999999999999999 899999999999999 999999999999999999999875 8999999999
Q ss_pred HhcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccccccccccccc
Q 027833 89 YALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETG 168 (218)
Q Consensus 89 ~alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~ 168 (218)
+|||++||+|||+|+||||||||||++.+|||+|+|++|+||+ ++|+|+|||+|+|++++++||++|++|+ ++
T Consensus 81 ~alr~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~vA~ll~-----~~g~d~vit~DlH~~~i~~~F~ipv~~l--~a 153 (332)
T PRK00553 81 DALKRGSAKSITAILPYYGYARQDRKTAGREPITSKLVADLLT-----KAGVTRVTLTDIHSDQTQGFFDIPVDIL--RT 153 (332)
T ss_pred HHHHHcCCCeEEEEeeccccchhhcccCCCCCccHHHHHHHHH-----hcCCCEEEEEeCChHHHHhhcCCCccee--ec
Confidence 9999999999999999999999999999999999999999999 8999999999999999999999999999 99
Q ss_pred HHHHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCc
Q 027833 169 IPLLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRW 207 (218)
Q Consensus 169 ~~~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~ 207 (218)
.|++++|+.+..+.++++||+||.||++||+.+|+.||+
T Consensus 154 ~~~~~~~~~~~~~~~~~vvVsPD~gg~~rA~~lA~~lg~ 192 (332)
T PRK00553 154 YHVFLSRVLELLGKKDLVVVSPDYGGVKRARLIAESLEL 192 (332)
T ss_pred hHHHHHHHHHhcCCCCeEEEEECCCcHHHHHHHHHHhCC
Confidence 999999996533568899999999999999999999984
No 3
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=5.4e-54 Score=389.33 Aligned_cols=185 Identities=23% Similarity=0.336 Sum_probs=177.1
Q ss_pred cCCCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc--hhHHHHHHHHH
Q 027833 12 SQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIY 89 (218)
Q Consensus 12 ~~~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p--d~lmELlll~~ 89 (218)
+..++|+||+|+++++||++||+.| |++++++++++|||| |+|+++.++++|++|+|+||+++| |++||||++++
T Consensus 17 ~~~~~~~i~~g~~~~~la~~ia~~l-g~~l~~~~~~~FpDG--E~~v~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~~ 93 (330)
T PRK02812 17 SDNNRLRLFSGSSNPALAQEVARYL-GMDLGPMIRKRFADG--ELYVQIQESIRGCDVYLIQPTCAPVNDHLMELLIMVD 93 (330)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHh-CCCceeeEEEECCCC--CEEEEeCCCCCCCEEEEECCCCCCccHHHHHHHHHHH
Confidence 4557899999999999999999999 899999999999999 999999999999999999999766 89999999999
Q ss_pred hcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccH
Q 027833 90 ALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGI 169 (218)
Q Consensus 90 alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~ 169 (218)
|||++||+|||+|+||||||||||++++|||+|+|++|+||+ ++|+|+|||+|+|++++++||++|++|+ ++.
T Consensus 94 alr~~ga~ri~~ViPYl~YaRQDr~~~~~e~isak~vA~lL~-----~~g~d~vitvDlH~~~~~~fF~ipv~nl--~~~ 166 (330)
T PRK02812 94 ACRRASARQITAVIPYYGYARADRKTAGRESITAKLVANLIT-----KAGADRVLAMDLHSAQIQGYFDIPCDHV--YGS 166 (330)
T ss_pred HHHHhCCceEEEEEecccccccccccCCCCCchHHHHHHHHH-----hcCCCEEEEEECCchHHcCccCCCceee--eCh
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999 999
Q ss_pred HHHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCc
Q 027833 170 PLLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRW 207 (218)
Q Consensus 170 ~~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~ 207 (218)
|.+++|+.+. +.+|++||+||.|+.+||+.+|+.|+.
T Consensus 167 ~~l~~~i~~~-~~~~~vvVsPD~gg~~ra~~~A~~L~~ 203 (330)
T PRK02812 167 PVLLDYLASK-NLEDIVVVSPDVGGVARARAFAKKLND 203 (330)
T ss_pred HHHHHHHHhc-CCCCeEEEEECCccHHHHHHHHHHhCC
Confidence 9999999764 468999999999999999999999953
No 4
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=6.9e-54 Score=387.66 Aligned_cols=192 Identities=73% Similarity=1.138 Sum_probs=173.8
Q ss_pred hcCCCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCchhHHHHHHHHHh
Q 027833 11 KSQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYA 90 (218)
Q Consensus 11 ~~~~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~pd~lmELlll~~a 90 (218)
|.+.++|+||+|+++++||++||+.+.|++++.+++++|||||.|+++++.++++|++|+|+||+++||++||||++++|
T Consensus 11 ~~~~~~~~i~~g~~~~~LA~~ia~~l~g~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~pd~lmELLl~~dA 90 (326)
T PLN02297 11 KKNKKQVHLFYCEETEELARKIAAESDAIELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSPAVIFEQLSVIYA 90 (326)
T ss_pred cccCCCeEEEECCCCHHHHHHHHHHhCCCceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCChHHHHHHHHHHH
Confidence 35667899999999999999999984269999999999999955566666799999999999999989999999999999
Q ss_pred cccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHH
Q 027833 91 LPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIP 170 (218)
Q Consensus 91 lr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~ 170 (218)
||++||+|||+|+||||||||||++++|||+|+|++|+||++++.+.+|+|+|+|+|+|++++++||+.|+.++++++.|
T Consensus 91 lr~~ga~~i~~ViPY~~YaRQDr~~~~ge~isak~vA~ll~~~~~~~~g~d~vitvDlH~~~~~~fF~~~~~~l~l~a~~ 170 (326)
T PLN02297 91 LPKLFVASFTLVLPFFPTGTSERVEREGDVATAFTLARILSNIPISRGGPTSLVIFDIHALQERFYFGDNVLPCFESGIP 170 (326)
T ss_pred HHHcCCCEEEEEeeCChhhcCCCCCCCCCCchHHHHHHHHhcccccccCCCEEEEEeCCChHHCCccCCcccchhhccHH
Confidence 99999999999999999999999999999999999999999444332799999999999999999999999877668999
Q ss_pred HHHHHHhhCCCCCCEEEEeCCcccHHHHHHHH
Q 027833 171 LLKQRLHQLPDANNLLHFRMMEPGSDSTRCWI 202 (218)
Q Consensus 171 ~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a 202 (218)
.+++|+++..+.+|++|||||.||.+|++.++
T Consensus 171 ~l~~~i~~~~~~~~~vvVsPD~Ga~~ra~~~a 202 (326)
T PLN02297 171 LLKKRLQQLPDSDNIVIAFPDDGAWKRFHKQF 202 (326)
T ss_pred HHHHHHHhccccCCcEEEecCccHHHHHHHHc
Confidence 99999976423578999999999999998877
No 5
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=7.4e-54 Score=387.50 Aligned_cols=186 Identities=25% Similarity=0.365 Sum_probs=177.8
Q ss_pred cCCCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc--hhHHHHHHHHH
Q 027833 12 SQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIY 89 (218)
Q Consensus 12 ~~~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p--d~lmELlll~~ 89 (218)
.++++++||+|+++++||++||+.| |++++++++++|||| |.|+++.++++|++|+|+||++.| |++||||++++
T Consensus 5 ~~~~~~~i~~~~~~~~la~~ia~~l-g~~l~~~~~~~FpdG--E~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~ 81 (323)
T PRK02458 5 YADKQIKLFSLNSNLEIAEKIAQAA-GVPLGKLSSRQFSDG--EIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMID 81 (323)
T ss_pred cCCCCeEEEECCCCHHHHHHHHHHh-CCceeeeEEEECCCC--CEEEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHH
Confidence 4568899999999999999999999 899999999999999 999999999999999999999765 89999999999
Q ss_pred hcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccH
Q 027833 90 ALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGI 169 (218)
Q Consensus 90 alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~ 169 (218)
|||++||++|++|+||||||||||++++|||+|+|++|+||+ ++|+|+|+|+|+|++++++||++|++|+ ++.
T Consensus 82 alr~~~a~~i~lViPYl~YaRQDr~~~~ge~isak~~a~lL~-----~~g~d~vitvD~H~~~i~~~F~~p~~nl--~~~ 154 (323)
T PRK02458 82 ACKRASANTVNVVLPYFGYARQDRIAKPREPITAKLVANMLV-----KAGVDRVLTLDLHAVQVQGFFDIPVDNL--FTV 154 (323)
T ss_pred HHHHcCCceEEEEEeccccchhhcccCCCCCchHHHHHHHHh-----hcCCCeEEEEecCcHHhhccccCCceEE--EEH
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999 999
Q ss_pred HHHHHHHhhC-CCCCCEEEEeCCcccHHHHHHHHHHcCc
Q 027833 170 PLLKQRLHQL-PDANNLLHFRMMEPGSDSTRCWIISLRW 207 (218)
Q Consensus 170 ~~l~~~l~~~-~~~~~~vvvsPD~Ga~~ra~~~a~~l~~ 207 (218)
|++++|+.+. ++.++++||+||.||.+||+.+|+.|++
T Consensus 155 p~~~~~l~~~~~~~~~~vvV~pd~Ga~~~A~~la~~L~~ 193 (323)
T PRK02458 155 PLFAKHYCKKGLSGSDVVVVSPKNSGIKRARSLAEYLDA 193 (323)
T ss_pred HHHHHHHHHhCCCCCceEEEEECCChHHHHHHHHHHhCC
Confidence 9999999764 2448899999999999999999999985
No 6
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=6.7e-54 Score=387.19 Aligned_cols=183 Identities=22% Similarity=0.269 Sum_probs=174.2
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc--hhHHHHHHHHHhc
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYAL 91 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p--d~lmELlll~~al 91 (218)
.++|+||+|+++++||++||+.| |++++++++++|||| |+|++++++++|++|+|+||+++| |++||||++++|+
T Consensus 4 ~~~~~i~~g~~~~~La~~ia~~l-g~~l~~~~~~~FpdG--E~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~al 80 (319)
T PRK04923 4 QRNLLVFSGNANKPLAQSICKEL-GVRMGKALVTRFSDG--EVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDAL 80 (319)
T ss_pred CCceEEEECCCCHHHHHHHHHHh-CCceeeeEEEECCCC--CEEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHH
Confidence 46799999999999999999999 999999999999999 999999999999999999999765 8999999999999
Q ss_pred ccCCCCeEEEEeecCCCccccccCCC-CCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHH
Q 027833 92 PRLFVASFTLVLPFFPTGSFERMEEE-GDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIP 170 (218)
Q Consensus 92 r~~ga~~ItlViPYl~YsRQDR~~~~-Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~ 170 (218)
|++||+|||+|+||||||||||++.+ |||+|+|++|+||+ ++|+|+|||+|+|++++++||++|++|+ ++.|
T Consensus 81 r~~~a~~i~~ViPYl~YaRQDr~~~~~~~~isak~va~ll~-----~~g~d~vitvD~H~~~~~~~f~~p~~~l--~~~~ 153 (319)
T PRK04923 81 KRASAASVTAVIPYFGYSRQDRRMRSSRVPITAKVAAKMIS-----AMGADRVLTVDLHADQIQGFFDVPVDNV--YASP 153 (319)
T ss_pred HHcCCcEEEEEeeccccccccccccCCCCCccHHHHHHHHH-----hcCCCEEEEEeCChHHHHhhcCCCceee--eChH
Confidence 99999999999999999999999965 67999999999999 8999999999999999999999999999 9999
Q ss_pred HHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcC
Q 027833 171 LLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLR 206 (218)
Q Consensus 171 ~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~ 206 (218)
.+++|+.+..+.+|++|||||.|+.+||+.+|+.|+
T Consensus 154 ~l~~~i~~~~~~~~~vVVsPD~Ga~~rA~~lA~~L~ 189 (319)
T PRK04923 154 LLLADIWRAYGTDNLIVVSPDVGGVVRARAVAKRLD 189 (319)
T ss_pred HHHHHHHHhcCCCCCEEEEECCchHHHHHHHHHHcC
Confidence 999999653346899999999999999999999997
No 7
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=6.1e-54 Score=387.56 Aligned_cols=183 Identities=28% Similarity=0.368 Sum_probs=175.7
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc--hhHHHHHHHHHhcc
Q 027833 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALP 92 (218)
Q Consensus 15 ~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p--d~lmELlll~~alr 92 (218)
++|+||+|+++++||++||+.| |++++++++++|||| |+|+++.+++||+||+|+||+.+| |++||||++++|||
T Consensus 4 ~~~~i~~~~~~~~la~~ia~~l-g~~l~~~~~~~FpdG--E~~v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~alr 80 (320)
T PRK02269 4 SDLKLFALSSNKELAEKVAQEI-GIELGKSSVRQFSDG--EIQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALK 80 (320)
T ss_pred CCeEEEECCCCHHHHHHHHHHh-CCceeeeEEEECCCC--CEEEEECCCCCCCEEEEEecCCCCccchHHHHHHHHHHHH
Confidence 4799999999999999999999 899999999999999 999999999999999999999875 89999999999999
Q ss_pred cCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHH
Q 027833 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLL 172 (218)
Q Consensus 93 ~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l 172 (218)
++||+|||+|+||||||||||++++|||+|+|++|+||+ ++|+|+|+|+|+|++++++||++|++|+ ++.|++
T Consensus 81 ~~~a~~i~~V~PYl~YaRQDr~~~~~e~isak~~a~ll~-----~~g~d~vit~D~H~~~~~~~f~~p~~~l--~~~p~l 153 (320)
T PRK02269 81 RASAESINVVMPYYGYARQDRKARSREPITSKLVANMLE-----VAGVDRLLTVDLHAAQIQGFFDIPVDHL--MGAPLI 153 (320)
T ss_pred HhCCCeEEEEEeccccchhhcccCCCCCchHHHHHHHHh-----hcCCCEEEEECCChHHHhccccCCchhh--hhHHHH
Confidence 999999999999999999999999999999999999999 8999999999999999999999999999 999999
Q ss_pred HHHHhhC-CCCCCEEEEeCCcccHHHHHHHHHHcCc
Q 027833 173 KQRLHQL-PDANNLLHFRMMEPGSDSTRCWIISLRW 207 (218)
Q Consensus 173 ~~~l~~~-~~~~~~vvvsPD~Ga~~ra~~~a~~l~~ 207 (218)
++|+.+. ++.++++|||||.||++||+.+|+.||+
T Consensus 154 ~~~i~~~~~~~~~~vvVsPd~G~~~~A~~lA~~lg~ 189 (320)
T PRK02269 154 ADYFDRRGLVGDDVVVVSPDHGGVTRARKLAQFLKT 189 (320)
T ss_pred HHHHHHhCCCCCCcEEEEECccHHHHHHHHHHHhCC
Confidence 9999764 2457899999999999999999999985
No 8
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=1.5e-53 Score=396.80 Aligned_cols=182 Identities=20% Similarity=0.224 Sum_probs=175.2
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc--hhHHHHHHHHHhcc
Q 027833 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALP 92 (218)
Q Consensus 15 ~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p--d~lmELlll~~alr 92 (218)
++|+||+|+++++||++||+.| |++++.+++++|||| |+|+++.++|||+||+|+||+++| |++||||++++|||
T Consensus 118 ~~m~I~sgs~~~~LA~~IA~~L-g~~l~~~~~~rFpDG--E~~Vri~e~VrG~dV~IVqS~~~pvNd~LmELLllidAlr 194 (439)
T PTZ00145 118 ENAILFSGSSNPLLSKNIADHL-GTILGRVHLKRFADG--EVSMQFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCR 194 (439)
T ss_pred CCeEEEECCCCHHHHHHHHHHh-CCCceeeEEEECCCC--CEEEEECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHHH
Confidence 6799999999999999999999 899999999999999 999999999999999999999876 88999999999999
Q ss_pred cCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccc--ccccccccccHH
Q 027833 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFS--DHVLPLFETGIP 170 (218)
Q Consensus 93 ~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~--~~~~~l~~~~~~ 170 (218)
++||+|||+|+||||||||||++++|||+|++++|+||+ ++|+|+|||+|+|++++++||+ +|++|+ ++.+
T Consensus 195 ~agAkrItlViPYl~YaRQDR~~~~gepIsak~vA~lL~-----~~G~d~VitvDlHs~~i~~fF~~~iPvdnl--~a~~ 267 (439)
T PTZ00145 195 RASAKKITAVIPYYGYARQDRKLSSRVPISAADVARMIE-----AMGVDRVVAIDLHSGQIQGFFGPRVPVDNL--EAQL 267 (439)
T ss_pred HhccCeEEEEeecccchheecccCCCCChhHHHHHHHHH-----HcCCCeEEEEecChHHHHhhcCCCcccccc--cccH
Confidence 999999999999999999999999999999999999999 8999999999999999999997 899999 9999
Q ss_pred HHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCc
Q 027833 171 LLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRW 207 (218)
Q Consensus 171 ~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~ 207 (218)
.+++|+.+. +..++|||+||.|+.+||+.+|+.|+.
T Consensus 268 ~~a~~i~~~-~l~~pVVVsPD~Ga~~RAr~~A~~L~~ 303 (439)
T PTZ00145 268 IGLDYFTKK-DLYKPVIVSPDAGGVYRARKFQDGLNH 303 (439)
T ss_pred HHHHHHhhc-CCCccEEEccCcchHHHHHHHHHHhcc
Confidence 999999763 468899999999999999999999973
No 9
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=9.5e-53 Score=377.02 Aligned_cols=181 Identities=18% Similarity=0.158 Sum_probs=172.1
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcccC
Q 027833 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRL 94 (218)
Q Consensus 16 ~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~alr~~ 94 (218)
+++||+|+++++||++||+.| |++++++++++|||| |.|+++.++++|+||+|+||+.+| |++||||++++|||++
T Consensus 2 ~~~i~~~~~~~~la~~ia~~l-g~~~~~~~~~~F~dG--E~~v~i~~~v~g~~V~ivqs~~~~n~~l~elll~~~alr~~ 78 (301)
T PRK07199 2 QPLLLALPGNEAAAGRLAAAL-GVEVGRIELHRFPDG--ESYVRLDSPVAGRTVVLVCSLDRPDEKLLPLLFAAEAAREL 78 (301)
T ss_pred ceEEEECCCCHHHHHHHHHHh-CCceeeeEEEECCCC--CEEEEECCCCCCCEEEEECCCCCCcHHHHHHHHHHHHHHHc
Confidence 578999999999999999999 899999999999999 999999999999999999999875 8899999999999999
Q ss_pred CCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCc---hhhhccccccccccccccHHH
Q 027833 95 FVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHA---LQERFYFSDHVLPLFETGIPL 171 (218)
Q Consensus 95 ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs---~~~~~~F~~~~~~l~~~~~~~ 171 (218)
||++||+|+||||||||||++++|||+|+|++|+||+ + |+|+|+|+|+|+ .++++||++|++|+ ++.+.
T Consensus 79 ~a~~i~~ViPY~~YaRqDr~~~~ge~isak~vA~ll~-----~-~~d~vit~DlH~~~~~~~~~~f~ip~~nl--~~~~~ 150 (301)
T PRK07199 79 GARRVGLVAPYLAYMRQDIAFHPGEAISQRHFARLLS-----G-SFDRLVTVDPHLHRYPSLSEVYPIPAVVL--SAAPA 150 (301)
T ss_pred CCCeEEEEeecccccccccccCCCCCccHHHHHHHHH-----h-hcCeEEEEeccchhhHHhcCcccCCcccc--chHHH
Confidence 9999999999999999999999999999999999998 4 899999999997 68899999999999 99999
Q ss_pred HHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCccc
Q 027833 172 LKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRWCV 209 (218)
Q Consensus 172 l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~~~ 209 (218)
+++|+++. .++++||+||.|+.+||+.+|+.+|.-+
T Consensus 151 la~~l~~~--~~~~vVVsPd~g~~~~a~~la~~l~~~~ 186 (301)
T PRK07199 151 IAAWIRAH--VPRPLLIGPDEESEQWVAAVAERAGAPH 186 (301)
T ss_pred HHHHHHhc--CCCcEEEEeCCChHHHHHHHHHHhCCCE
Confidence 99999763 5789999999999999999999999633
No 10
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=2e-52 Score=376.13 Aligned_cols=180 Identities=27% Similarity=0.330 Sum_probs=173.5
Q ss_pred EEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc--hhHHHHHHHHHhcccC
Q 027833 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALPRL 94 (218)
Q Consensus 17 ~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p--d~lmELlll~~alr~~ 94 (218)
|+||+|+++++||++||+.| |.+++++++++|||| |+|+++.++++|++|+|+||+++| |++|||+++++|+|++
T Consensus 1 ~~i~~~~~~~~la~~ia~~l-g~~~~~~~~~~FpdG--E~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ 77 (309)
T PRK01259 1 MKLFAGNANPELAEKIAKYL-GIPLGKASVGRFSDG--EISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRA 77 (309)
T ss_pred CEEEECCCCHHHHHHHHHHh-CCceeeeEEEECCCC--CEEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHc
Confidence 57999999999999999999 899999999999999 999999999999999999999655 8999999999999999
Q ss_pred CCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHHHH
Q 027833 95 FVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQ 174 (218)
Q Consensus 95 ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~ 174 (218)
||++||+|+||||||||||++++|||+|+|++|+||+ ++|+|+|+|+|+|++++++||++|++|+ ++.|.+++
T Consensus 78 ga~~i~lViPYl~YsRQDr~~~~ge~isak~~a~lL~-----~~g~d~vitvD~H~~~~~~~f~~p~~~l--~~~~~l~~ 150 (309)
T PRK01259 78 SAGRITAVIPYFGYARQDRKARSRVPITAKLVANLLE-----TAGADRVLTMDLHADQIQGFFDIPVDNL--YGSPILLE 150 (309)
T ss_pred CCceEEEEeeccccchhhhhhccCCCchHHHHHHHHh-----hcCCCEEEEEcCChHHHcCcCCCCceee--eecHHHHH
Confidence 9999999999999999999999999999999999999 8999999999999999999999999999 99999999
Q ss_pred HHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCc
Q 027833 175 RLHQLPDANNLLHFRMMEPGSDSTRCWIISLRW 207 (218)
Q Consensus 175 ~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~ 207 (218)
|+++. +.++++||+||.||..+|+.+|..||+
T Consensus 151 ~i~~~-~~~~~vvv~pd~Gg~~~A~~la~~Lg~ 182 (309)
T PRK01259 151 DIKQK-NLENLVVVSPDVGGVVRARALAKRLDA 182 (309)
T ss_pred HHHhc-CCCCcEEEEECCCcHHHHHHHHHHhCC
Confidence 99764 468999999999999999999999985
No 11
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=5.1e-52 Score=372.75 Aligned_cols=169 Identities=24% Similarity=0.369 Sum_probs=163.1
Q ss_pred HHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc--hhHHHHHHHHHhcccCCCCeEEEEeec
Q 027833 28 LARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALPRLFVASFTLVLPF 105 (218)
Q Consensus 28 La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p--d~lmELlll~~alr~~ga~~ItlViPY 105 (218)
||++||+.| |++++++++++|||| |+|+++.++++|++|+|+||+++| |++||||++++|||++||+|||+|+||
T Consensus 1 la~~ia~~l-~~~l~~~~~~~F~DG--E~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPY 77 (304)
T PRK03092 1 LAEEVAKEL-GVEVTPTTAYDFANG--EIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPF 77 (304)
T ss_pred CHHHHHHHh-CCceeeeEEEECCCC--CEEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEec
Confidence 689999999 899999999999999 999999999999999999999876 899999999999999999999999999
Q ss_pred CCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHHHHHHhhCCCCCCE
Q 027833 106 FPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQLPDANNL 185 (218)
Q Consensus 106 l~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~~l~~~~~~~~~ 185 (218)
||||||||++++|||+|+|++|+||+ .+|+|+|+|+|+|++++++||++|++|+ ++.|.+++|+.+..+.+|+
T Consensus 78 l~YaRQDr~~~~~e~isak~va~lL~-----~~g~d~vitvD~H~~~~~~~f~~p~~~l--~~~~~la~~i~~~~~~~~~ 150 (304)
T PRK03092 78 YPYARQDKKHRGREPISARLVADLFK-----TAGADRIMTVDLHTAQIQGFFDGPVDHL--FAMPLLADYVRDKYDLDNV 150 (304)
T ss_pred ccccccccccCCCCCccHHHHHHHHH-----hcCCCeEEEEecChHHHHhhcCCCeeeE--echHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999 8999999999999999999999999999 9999999999764356899
Q ss_pred EEEeCCcccHHHHHHHHHHcC
Q 027833 186 LHFRMMEPGSDSTRCWIISLR 206 (218)
Q Consensus 186 vvvsPD~Ga~~ra~~~a~~l~ 206 (218)
+|||||.||.+||+.+|+.|+
T Consensus 151 vvVspd~Ga~~~a~~la~~L~ 171 (304)
T PRK03092 151 TVVSPDAGRVRVAEQWADRLG 171 (304)
T ss_pred EEEEecCchHHHHHHHHHHcC
Confidence 999999999999999999999
No 12
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=2.2e-51 Score=365.42 Aligned_cols=178 Identities=20% Similarity=0.233 Sum_probs=169.8
Q ss_pred EEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcccCCC
Q 027833 18 HLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFV 96 (218)
Q Consensus 18 ~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~alr~~ga 96 (218)
+||+|+++++||++||+.| |++++++++++|||| |.|+++.++++|++|+|+|++.++ |++||||++++|||++||
T Consensus 1 ~i~~~~~~~~la~~ia~~l-~~~~~~~~~~~FpdG--E~~v~i~~~v~g~~v~i~~~~~~~~d~l~ell~~~~alr~~ga 77 (285)
T PRK00934 1 MIIGGSASQLLASEVARLL-NTELALVETKRFPDG--ELYVRILGEIDGEDVVIISTTYPQDENLVELLLLIDALRDEGA 77 (285)
T ss_pred CeEeCCCCHHHHHHHHHHH-CCceEeeEEEECCCC--CEEEEECCCcCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 3789999999999999999 999999999999999 999999999999999999998776 779999999999999999
Q ss_pred CeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHHHHHH
Q 027833 97 ASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRL 176 (218)
Q Consensus 97 ~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~~l 176 (218)
+|||+|+||||||||||++++|||+|+|++|+||+ ++| |+|+|+|+|++++++||++|++|+ ++.+.+++|+
T Consensus 78 ~~i~~v~PY~~YaRqDr~~~~ge~isak~~a~ll~-----~~~-d~vitvD~H~~~~~~~f~~~~~~l--~a~~~la~~i 149 (285)
T PRK00934 78 KSITLVIPYLGYARQDKRFKPGEPISARAIAKIIS-----AYY-DRIITINIHEPSILEFFPIPFINL--DAAPLIAEYI 149 (285)
T ss_pred CeEEEEecCCcccccccccCCCCCccHHHHHHHHH-----Hhc-CEEEEEcCChHHHcCcCCCcEeEe--ecHHHHHHHH
Confidence 99999999999999999999999999999999999 788 999999999999999999999999 9999999999
Q ss_pred hhCCCCCCEEEEeCCcccHHHHHHHHHHcCcc
Q 027833 177 HQLPDANNLLHFRMMEPGSDSTRCWIISLRWC 208 (218)
Q Consensus 177 ~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~~ 208 (218)
.+ +.++++||+||.|+..+|+.+|+.||+-
T Consensus 150 ~~--~~~~~vvv~pd~Ga~~~a~~lA~~l~~~ 179 (285)
T PRK00934 150 GD--KLDDPLVLAPDKGALELAKEAAEILGCE 179 (285)
T ss_pred Hh--cCCCCEEEEeCCchHHHHHHHHHHhCCC
Confidence 65 4568899999999999999999999953
No 13
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=6.6e-51 Score=365.76 Aligned_cols=180 Identities=24% Similarity=0.342 Sum_probs=172.7
Q ss_pred EEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEE-EecCCc--hhHHHHHHHHHhccc
Q 027833 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFL-ASFSSP--GVIFEQISVIYALPR 93 (218)
Q Consensus 17 ~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Ii-qs~~~p--d~lmELlll~~alr~ 93 (218)
|+||+|+++++||++||+.| |++++++++++|||| |+|+++.++++|+||+|+ ||+++| |++|||+++++|+|+
T Consensus 1 ~~i~~~~~~~~la~~ia~~l-g~~~~~~~~~~FpdG--E~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~ 77 (308)
T TIGR01251 1 MKIFSGSSNQELAQKVAKNL-GLPLGDVEVKRFPDG--ELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKR 77 (308)
T ss_pred CEEEECCCCHHHHHHHHHHh-CCeeeeeEEEECCCC--CEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHH
Confidence 57899999999999999999 899999999999999 999999999999999999 999755 899999999999999
Q ss_pred CCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHHH
Q 027833 94 LFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLK 173 (218)
Q Consensus 94 ~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~ 173 (218)
+||+|||+|+||||||||||++++|||+|+|++|+||+ ++|+|+++|+|+|++++++||++|++|+ ++.+.++
T Consensus 78 ~ga~~i~~v~PYl~Y~RqDr~~~~ge~is~~~~a~ll~-----~~g~d~vit~DlHs~~~~~~f~ip~~~l--~a~~~l~ 150 (308)
T TIGR01251 78 ASAKSITAVIPYYGYARQDKKFKSREPISAKLVANLLE-----TAGADRVLTVDLHSPQIQGFFDVPVDNL--YASPVLA 150 (308)
T ss_pred cCCCeEEEEEEecccchhccccCCCCCchHHHHHHHHH-----HcCCCEEEEecCChHHhcCcCCCceecc--cCHHHHH
Confidence 99999999999999999999999999999999999999 8999999999999999999999999999 9999999
Q ss_pred HHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCc
Q 027833 174 QRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRW 207 (218)
Q Consensus 174 ~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~ 207 (218)
+|+.+. ..++++||+||.|+..+|+.+|+.||.
T Consensus 151 ~~i~~~-~~~~~viv~pd~g~~~~A~~lA~~Lg~ 183 (308)
T TIGR01251 151 EYLKKK-ILDNPVVVSPDAGGVERAKKVADALGC 183 (308)
T ss_pred HHHHhh-CCCCCEEEEECCchHHHHHHHHHHhCC
Confidence 999774 257899999999999999999999984
No 14
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=2.2e-50 Score=371.51 Aligned_cols=186 Identities=15% Similarity=0.143 Sum_probs=171.6
Q ss_pred cCCCcEEEEecCCcHHHHHHHHHHc---------------C----C--CceeeeeEeecCCCCCeeEEEecCCCCCCeEE
Q 027833 12 SQKKQVHLFYCVECEELARKVAAQS---------------D----L--ITLQSINWRNFADGWPNLYINSAHDIRGQHVA 70 (218)
Q Consensus 12 ~~~~~~~i~~g~~~~~La~~Ia~~l---------------~----~--~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~ 70 (218)
-..+++.||+|+++.+||++||+.| + + .+++++++++|||| |+|+++.+++||+|||
T Consensus 4 ~~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~FpDG--E~~vri~~~Vrg~dV~ 81 (382)
T PRK06827 4 LPVGSLGIIALPSCRELADKVDEHLVRIRERKENENIESLAFKGYSRESYLIPAKFIRFSNG--EAKGEILESVRGKDIY 81 (382)
T ss_pred CCCCceEEEECCCCHHHHHHHHHHHHHhhhhccccccccccccccCCcceeeeeEEEECCCC--CEEEEECCCCCCCeEE
Confidence 4557899999999999999999999 3 4 45999999999999 9999999999999999
Q ss_pred EEEecCC--------------c--hhHHHHHHHHHhcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCC
Q 027833 71 FLASFSS--------------P--GVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIP 134 (218)
Q Consensus 71 Iiqs~~~--------------p--d~lmELlll~~alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~ 134 (218)
|+||+++ | |++||||++++||| +||+|||+|+||||||||||+ .+|||+|+|++|+||+
T Consensus 82 ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViPY~~YaRQDr~-~~~e~itak~vA~lL~--- 156 (382)
T PRK06827 82 ILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMPFLYESRQHKR-KGRESLDCALALQELE--- 156 (382)
T ss_pred EEecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEeecccccccccc-cCCCCccHHHHHHHHH---
Confidence 9999963 3 89999999999999 999999999999999999999 8999999999999999
Q ss_pred CCCCCCCEEEEEeCCchhhhcccc-ccccccccccHHHHHHHHhhCC-----CCCCEEEEeCCcccHHHHHHHHHHcCcc
Q 027833 135 TSRGGPTSLVIYDIHALQERFYFS-DHVLPLFETGIPLLKQRLHQLP-----DANNLLHFRMMEPGSDSTRCWIISLRWC 208 (218)
Q Consensus 135 ~~~~G~d~vitvDlHs~~~~~~F~-~~~~~l~~~~~~~l~~~l~~~~-----~~~~~vvvsPD~Ga~~ra~~~a~~l~~~ 208 (218)
++|+|+|||+|+|++++++||+ .|++|+ ++.+.+++|+.+.. +.++++|||||.||++||+.+|+.||+-
T Consensus 157 --~~G~d~vitvDlHs~~i~~~F~~~pvdnl--~a~~~l~~~i~~~i~~l~~d~~~~VVVsPD~Gg~~rA~~~A~~Lg~~ 232 (382)
T PRK06827 157 --ELGVDNIITFDAHDPRIENAIPLMGFENL--YPSYQIIKALLKNEKDLEIDKDHLMVISPDTGAMDRAKYYASVLGVD 232 (382)
T ss_pred --HcCCCeEEEecCChHHhcccCCCCCcCCc--CchHHHHHHHHHhcccccccCCCcEEEEECccchHHHHHHHHHhCCC
Confidence 8999999999999999999998 589999 99999999996531 3378999999999999999999999853
No 15
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-50 Score=356.29 Aligned_cols=187 Identities=25% Similarity=0.352 Sum_probs=180.7
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc--hhHHHHHHHHHhc
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYAL 91 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p--d~lmELlll~~al 91 (218)
++++.+|+|.++++||++||++| |++++++.+++|+|| |+++++.+++||+||+|+||.++| |++||||+|++|+
T Consensus 1 ~~~i~lf~g~shp~La~~I~~~l-gi~l~~v~~kkf~ng--e~~v~i~esvR~~dV~iiqsgsg~ind~lmELLI~I~ac 77 (316)
T KOG1448|consen 1 MKNIKLFSGDSHPELAERIAARL-GIELGKVNLKKFSNG--ETSVQIGESVRGEDVYIIQSGSGPINDNLMELLIMINAC 77 (316)
T ss_pred CCceEEEcCCCCHHHHHHHHHHh-CCCcceeeeEEccCC--cEEEecccccccCcEEEeccCCCcchHHHHHHHHHHHhc
Confidence 35789999999999999999999 899999999999999 999999999999999999999999 9999999999999
Q ss_pred ccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHH
Q 027833 92 PRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPL 171 (218)
Q Consensus 92 r~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~ 171 (218)
+.++|++||+|+|||||+||||+.+.+.++++|++|+||+ .+|+|++||+|+|..|.++||++|++|+ ++.|.
T Consensus 78 ~~asa~~vTaViP~Fpyarq~~k~~~r~~i~aklVanlls-----~aG~dhvItmDlHa~Q~qgfF~ipVdnl--y~~p~ 150 (316)
T KOG1448|consen 78 KRASASRVTAVIPYFPYARQDKKDKSRAPILAKLVANLLS-----SAGADHVITMDLHASQIQGFFDIPVDNL--YAEPA 150 (316)
T ss_pred chhhhheeEEeccCCccccchhhhhhhhhHHHHHHHhhhh-----ccCCceEEEecccchhhCceeeccchhh--ccchH
Confidence 9999999999999999999999999999999999999999 9999999999999999999999999999 99999
Q ss_pred HHHHHhh-CCCCCCEEEEeCCcccHHHHHHHHHHcCcccc
Q 027833 172 LKQRLHQ-LPDANNLLHFRMMEPGSDSTRCWIISLRWCVP 210 (218)
Q Consensus 172 l~~~l~~-~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~~~~ 210 (218)
+.+|++. ..+.+|.++||||.||.||+..+|..|+.-+.
T Consensus 151 ~l~~ir~~~~~~~~~vivSPdaGgaKR~~s~ad~l~~~fa 190 (316)
T KOG1448|consen 151 VLNYIRENIPDSENAVIVSPDAGGAKRVTSLADRLNLDFA 190 (316)
T ss_pred HHHHHHhhCCCccceEEECCCcchhhhhHHHHHhhcchhh
Confidence 9999987 56899999999999999999999999987655
No 16
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=7.8e-50 Score=358.33 Aligned_cols=171 Identities=22% Similarity=0.327 Sum_probs=163.1
Q ss_pred HHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc--hhHHHHHHHHHhcccCCCCeEEEEee
Q 027833 27 ELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALPRLFVASFTLVLP 104 (218)
Q Consensus 27 ~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p--d~lmELlll~~alr~~ga~~ItlViP 104 (218)
+||++||+.| |++++.+++++|||| |+|+++.++++|++|+|+||+++| |++||||++++|||++||++||+|+|
T Consensus 2 ~lA~~ia~~l-g~~l~~~~~~~FpdG--E~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViP 78 (302)
T PLN02369 2 ALSQEIACYL-GLELGKITIKRFADG--EIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIP 78 (302)
T ss_pred hHHHHHHHHh-CCceeeeEEEECCCC--CEEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEee
Confidence 6999999999 899999999999999 999999999999999999999866 89999999999999999999999999
Q ss_pred cCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHHHHHHhhC-CCCC
Q 027833 105 FFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQL-PDAN 183 (218)
Q Consensus 105 Yl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~~l~~~-~~~~ 183 (218)
|||||||||++++|||+|+|++|+||+ ++|+|+|+|+|+|++++++||++|++|+ ++.|.+++|+.+. .+.+
T Consensus 79 Yl~YsRQDr~~~~~e~isak~va~lL~-----~~g~d~vi~vDlHs~~i~~~F~ip~~~l--~~~~~~~~~i~~~~~~~~ 151 (302)
T PLN02369 79 YFGYARADRKTQGRESIAAKLVANLIT-----EAGADRVLACDLHSGQSMGYFDIPVDHV--YGQPVILDYLASKTISSP 151 (302)
T ss_pred cccccccccccCCCCCchHHHHHHHHH-----hcCCCEEEEEECCchHHhhccCCceecc--cchHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999 8999999999999999999999999999 9999999999663 2347
Q ss_pred CEEEEeCCcccHHHHHHHHHHcCc
Q 027833 184 NLLHFRMMEPGSDSTRCWIISLRW 207 (218)
Q Consensus 184 ~~vvvsPD~Ga~~ra~~~a~~l~~ 207 (218)
+++||+||.||.+||+.+++.++.
T Consensus 152 ~~vvVspd~gg~~~a~~~a~~l~~ 175 (302)
T PLN02369 152 DLVVVSPDVGGVARARAFAKKLSD 175 (302)
T ss_pred ceEEEEECcChHHHHHHHHHHcCC
Confidence 899999999999999999999943
No 17
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=100.00 E-value=3e-41 Score=292.09 Aligned_cols=190 Identities=21% Similarity=0.263 Sum_probs=180.6
Q ss_pred hhhcCCCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc--hhHHHHHH
Q 027833 9 AKKSQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQIS 86 (218)
Q Consensus 9 ~~~~~~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p--d~lmELll 86 (218)
|| ..+.++.+|+|+++++||+.|++.| |+++++..+.+-+|+ |+.|++.++||||||||+|+...+ .++||||+
T Consensus 2 ~n-~a~sg~vl~s~ns~~elak~vaerl-gi~~g~~~vy~~tnr--et~vei~~svrgkdvfiiqt~skdvn~~vmelli 77 (354)
T KOG1503|consen 2 MN-DASSGMVLFSGNSHPELAKMVAERL-GIELGKATVYQKTNR--ETRVEIKESVRGKDVFIIQTGSKDVNNDVMELLI 77 (354)
T ss_pred CC-cccCCeEEEcCCCCHHHHHHHHHHh-cccccceEEEecCCC--ceEEEhhhhccCceEEEEEecCcccchHHHHHHH
Confidence 45 6778999999999999999999999 899999999999999 999999999999999999999887 89999999
Q ss_pred HHHhcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccccccccccc
Q 027833 87 VIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFE 166 (218)
Q Consensus 87 l~~alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~ 166 (218)
|++|||.++|++|+.||||||||.|.|..+ +.++.+|++|.|+. .+|..++||+|+|..++|+||++|++|+
T Consensus 78 m~yackts~aksiigvipy~pyskqckmrk-rgsiv~klla~mmc-----kaglthlitmdlhqkeiqgff~~pvdnl-- 149 (354)
T KOG1503|consen 78 MAYACKTSCAKSIIGVIPYLPYSKQCKMRK-RGSIVSKLLASMMC-----KAGLTHLITMDLHQKEIQGFFSIPVDNL-- 149 (354)
T ss_pred HHHHHhhhhhhceEEEeecCccchhhhhhh-cccHHHHHHHHHHH-----hcccceEEeehhhhHhhcceeccccccc--
Confidence 999999999999999999999999999955 77899999999999 9999999999999999999999999999
Q ss_pred ccHHHHHHHHhh-CCCCCCEEEEeCCcccHHHHHHHHHHcCcccc
Q 027833 167 TGIPLLKQRLHQ-LPDANNLLHFRMMEPGSDSTRCWIISLRWCVP 210 (218)
Q Consensus 167 ~~~~~l~~~l~~-~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~~~~ 210 (218)
.+.|+|.+|+.+ .++.+|.|||+-..|..+||+.+|+.|+.-+.
T Consensus 150 raspfllqyiqe~ipdyrnavivaksp~~akka~syaerlrlgla 194 (354)
T KOG1503|consen 150 RASPFLLQYIQEEIPDYRNAVIVAKSPGVAKKAQSYAERLRLGLA 194 (354)
T ss_pred ccCHHHHHHHHHhCccccceEEEecCcchhhHHHhHHHHHhhcee
Confidence 999999999987 46899999999999999999999999877653
No 18
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=100.00 E-value=5.6e-41 Score=263.34 Aligned_cols=111 Identities=29% Similarity=0.483 Sum_probs=97.3
Q ss_pred EEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc--hhHHHHHHHHHhcccC
Q 027833 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALPRL 94 (218)
Q Consensus 17 ~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p--d~lmELlll~~alr~~ 94 (218)
|+||+|+++.+||++||+.| |++++++++++|||| |.|+++.++++|+||+|+||+++| |++||||++++|+|++
T Consensus 1 m~I~~g~~~~~La~~ia~~L-~~~~~~~~~~~F~dG--E~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~ 77 (116)
T PF13793_consen 1 MVIFSGSSSQDLAERIAEAL-GIPLGKVETKRFPDG--ETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRA 77 (116)
T ss_dssp EEEEESSSGHHHHHHHHHHT-TS-EE-EEEEE-TTS---EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHT
T ss_pred CEEEECCCCHHHHHHHHHHh-CCceeeeEEEEcCCC--CEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHc
Confidence 68999999999999999999 999999999999999 999999999999999999999988 9999999999999999
Q ss_pred CCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHh
Q 027833 95 FVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILS 131 (218)
Q Consensus 95 ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~ 131 (218)
||++||+|+||||||||||+ .+|||+|++++|+||+
T Consensus 78 ~a~~i~~ViPYl~YaRQDr~-~~ge~isak~~a~lL~ 113 (116)
T PF13793_consen 78 GAKRITLVIPYLPYARQDRR-KPGEPISAKVVAKLLS 113 (116)
T ss_dssp TBSEEEEEESS-TTTTSSSS-STTC--HHHHHHHHHH
T ss_pred CCcEEEEeccchhhhhhccC-CCCCcchHHHHHHHHH
Confidence 99999999999999999999 9999999999999999
No 19
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=98.84 E-value=1.5e-07 Score=85.02 Aligned_cols=137 Identities=16% Similarity=0.131 Sum_probs=106.7
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeec-CCCCCeeEEE-ecCCCCCCeEEEEEecCCchhHHHHHHHHHhc
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNF-ADGWPNLYIN-SAHDIRGQHVAFLASFSSPGVIFEQISVIYAL 91 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~F-pDG~~E~~v~-i~~~vrG~dV~Iiqs~~~pd~lmELlll~~al 91 (218)
+..+++-...++..+|..+|+.| |.++..++-.++ ++| |.... +..+++|++|+|+.++.+... .++..++++
T Consensus 159 ~~~viv~pd~g~~~~A~~lA~~L-g~~~~~i~k~r~~~~~--~~~~~~~~~~v~g~~vliVDDii~tG~--Tl~~a~~~l 233 (308)
T TIGR01251 159 DNPVVVSPDAGGVERAKKVADAL-GCPLAIIDKRRISATN--EVEVMNLVGDVEGKDVVIVDDIIDTGG--TIAKAAEIL 233 (308)
T ss_pred CCCEEEEECCchHHHHHHHHHHh-CCCEEEEEEEecCCCC--EEEEEecccccCCCEEEEEccccCCHH--HHHHHHHHH
Confidence 34566666666778999999999 899998888888 888 76654 356899999999999987744 567778999
Q ss_pred ccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHH
Q 027833 92 PRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPL 171 (218)
Q Consensus 92 r~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~ 171 (218)
++.||++|.++.|. ...+| ..+.++.+ .|+++|++.|.|... .+|+ ++..+ +..+.
T Consensus 234 ~~~ga~~v~~~~th--------~v~~~-----~a~~~l~~------~~~~~iv~tdt~~~~--~~~~-~~~~v--~va~~ 289 (308)
T TIGR01251 234 KSAGAKRVIAAATH--------GVFSG-----PAIERIAN------AGVEEVIVTNTIPHE--KHKP-KVSVI--SVAPL 289 (308)
T ss_pred HhcCCCEEEEEEEe--------eecCc-----HHHHHHHh------CCCCEEEEeCCCCcc--ccCC-CcEEE--EhHHH
Confidence 99999999999983 11223 33466665 689999999999864 3454 67778 88999
Q ss_pred HHHHHhhC
Q 027833 172 LKQRLHQL 179 (218)
Q Consensus 172 l~~~l~~~ 179 (218)
+++.+...
T Consensus 290 la~~i~~~ 297 (308)
T TIGR01251 290 IAEAIRRI 297 (308)
T ss_pred HHHHHHHH
Confidence 99999764
No 20
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=97.58 E-value=0.0046 Score=55.94 Aligned_cols=132 Identities=17% Similarity=0.102 Sum_probs=94.1
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEe--cCCCCCCeEEEEEecCCchhHHHHHHHHHhc
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINS--AHDIRGQHVAFLASFSSPGVIFEQISVIYAL 91 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i--~~~vrG~dV~Iiqs~~~pd~lmELlll~~al 91 (218)
+..+++-+..+...+++.+|+.+ +.++.-..-.+..++ +..+.. ..+++|++|+||..+.+.-.- +.-.+..|
T Consensus 160 ~~~vVVsPd~g~~~~a~~la~~l-~~~~~~~~K~R~~~~--~~~~~~~~~~~v~Gr~vIIVDDIidTG~T--l~~aa~~L 234 (301)
T PRK07199 160 PRPLLIGPDEESEQWVAAVAERA-GAPHAVLRKTRHGDR--DVEISLPDAAPWAGRTPVLVDDIVSTGRT--LIEAARQL 234 (301)
T ss_pred CCcEEEEeCCChHHHHHHHHHHh-CCCEEEEEEEecCCC--eEEEEeccCcccCCCEEEEEecccCcHHH--HHHHHHHH
Confidence 34566666667778999999999 898876666666666 444433 357899999999888766332 33567889
Q ss_pred ccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHH
Q 027833 92 PRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPL 171 (218)
Q Consensus 92 r~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~ 171 (218)
|+.||++|.++.-.- .++.....++.. .|+++|++-|-+... ..-+ +..|+
T Consensus 235 k~~GA~~V~~~~tHg-------------vfs~~a~~~l~~------~~i~~iv~Tdti~~~--------~~~~--sva~l 285 (301)
T PRK07199 235 RAAGAASPDCVVVHA-------------LFAGDAYSALAA------AGIARVVSTDTVPHP--------SNAI--SLAPL 285 (301)
T ss_pred HHCCCcEEEEEEEee-------------eCChHHHHHHHh------CCCCEEEEeCCccCC--------CCEE--ehHHH
Confidence 999999999987431 334445555554 789999999987421 1235 77899
Q ss_pred HHHHHhhC
Q 027833 172 LKQRLHQL 179 (218)
Q Consensus 172 l~~~l~~~ 179 (218)
+++.|+..
T Consensus 286 la~~i~~~ 293 (301)
T PRK07199 286 LAEALRRE 293 (301)
T ss_pred HHHHHHHH
Confidence 99999763
No 21
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.55 E-value=0.0063 Score=55.15 Aligned_cols=139 Identities=15% Similarity=0.126 Sum_probs=95.7
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCC-CceeeeeEeecCC--CCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHH
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDL-ITLQSINWRNFAD--GWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIY 89 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~-~~~~~~~~~~FpD--G~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~ 89 (218)
+..++|-...++..+|+.+++.| + .++..+.-.+..+ | .+....+..++.|++|+||..+.+. ..+ ...++
T Consensus 148 ~~~vvVspd~Ga~~~a~~la~~L-~~~~~~~i~k~R~~~~~~-~~~~~~~~~dv~gr~viIVDDIi~TG~Tl---~~aa~ 222 (304)
T PRK03092 148 DNVTVVSPDAGRVRVAEQWADRL-GGAPLAFIHKTRDPTVPN-QVVANRVVGDVEGRTCVLVDDMIDTGGTI---AGAVR 222 (304)
T ss_pred CCcEEEEecCchHHHHHHHHHHc-CCCCEEEEEEEcccCCCC-ceEEEecCcCCCCCEEEEEccccCcHHHH---HHHHH
Confidence 44566666677888999999999 7 8887777666433 2 1234556778999999999888766 333 35568
Q ss_pred hcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccH
Q 027833 90 ALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGI 169 (218)
Q Consensus 90 alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~ 169 (218)
.|++.||++|.++.-+- .++...+-++.+ .|+++|++-|-+..... ....++..+ +..
T Consensus 223 ~Lk~~Ga~~I~~~~tH~-------------v~~~~a~~~l~~------~~~~~i~~t~tip~~~~-~~~~~~~~~--sva 280 (304)
T PRK03092 223 ALKEAGAKDVIIAATHG-------------VLSGPAAERLKN------CGAREVVVTDTLPIPEE-KRFDKLTVL--SIA 280 (304)
T ss_pred HHHhcCCCeEEEEEEcc-------------cCChHHHHHHHH------CCCCEEEEeeeeccchh-hcCCCeEEE--EhH
Confidence 88999999999987321 223334445555 68999999998732111 112345556 778
Q ss_pred HHHHHHHhhC
Q 027833 170 PLLKQRLHQL 179 (218)
Q Consensus 170 ~~l~~~l~~~ 179 (218)
+.++++|+..
T Consensus 281 ~~la~~i~~~ 290 (304)
T PRK03092 281 PLLARAIREV 290 (304)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 22
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.51 E-value=0.0045 Score=55.46 Aligned_cols=128 Identities=16% Similarity=0.163 Sum_probs=89.6
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEe-cCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcc
Q 027833 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINS-AHDIRGQHVAFLASFSSP-GVIFEQISVIYALP 92 (218)
Q Consensus 15 ~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i-~~~vrG~dV~Iiqs~~~p-d~lmELlll~~alr 92 (218)
..+++-...++..+|..+|+.+ +.++..+.-.+..++ +..+.. ..+++|++|+||..+.+. ..+. -.+.+|+
T Consensus 155 ~~vvv~pd~Ga~~~a~~lA~~l-~~~~~~i~k~r~~~~--~~~~~~~~~~v~Gk~VlIVDDIi~TG~Tl~---~aa~~Lk 228 (285)
T PRK00934 155 DPLVLAPDKGALELAKEAAEIL-GCEYDYLEKTRISPT--EVEIAPKNLDVKGKDVLIVDDIISTGGTMA---TAIKILK 228 (285)
T ss_pred CCEEEEeCCchHHHHHHHHHHh-CCCEEEEEEEecCCC--eEEEeccccccCCCEEEEEcCccccHHHHH---HHHHHHH
Confidence 3456656666788999999999 899877666666665 554432 246899999999888766 4433 4557788
Q ss_pred cCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHH
Q 027833 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLL 172 (218)
Q Consensus 93 ~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l 172 (218)
+.||++|.++.-+- .++....-++.+ .|+++|++-|-+.. ++..+ +..|+|
T Consensus 229 ~~GA~~V~~~~~H~-------------i~~~~a~~~l~~------~~i~~i~~tnti~~--------~~~~~--~va~~l 279 (285)
T PRK00934 229 EQGAKKVYVACVHP-------------VLVGDAILKLYN------AGVDEIIVTDTLES--------EVSKI--SVAPLI 279 (285)
T ss_pred HCCCCEEEEEEEee-------------ccCcHHHHHHHh------CCCCEEEEcCCCCC--------CceEE--EcHHHH
Confidence 99999998887431 122233334444 78999999999842 23345 778999
Q ss_pred HHHHh
Q 027833 173 KQRLH 177 (218)
Q Consensus 173 ~~~l~ 177 (218)
+++|+
T Consensus 280 a~~i~ 284 (285)
T PRK00934 280 ADLLK 284 (285)
T ss_pred HHHHh
Confidence 99885
No 23
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.47 E-value=0.0067 Score=55.40 Aligned_cols=141 Identities=16% Similarity=0.095 Sum_probs=95.3
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCC-CceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCchhHHHHHHHHHhcc
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDL-ITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALP 92 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~-~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~pd~lmELlll~~alr 92 (218)
...+++-+..++...|+.+|+.| + .++....-.+..+++ +.-..+..+++|++++||..+.+.-.- +...+.+|+
T Consensus 166 ~~~vVVsPD~Ga~~rA~~lA~~L-~~~~~~~~~K~R~~~~~-~~~~~~~gdv~Gr~viIVDDIidTG~T--l~~aa~~Lk 241 (319)
T PRK04923 166 DNLIVVSPDVGGVVRARAVAKRL-DDADLAIIDKRRPRANV-ATVMNIIGDVQGKTCVLVDDLVDTAGT--LCAAAAALK 241 (319)
T ss_pred CCCEEEEECCchHHHHHHHHHHc-CCCCEEEeccccCCCCc-eEEEecccCCCCCEEEEEecccCchHH--HHHHHHHHH
Confidence 34566666667788999999999 6 677655555544431 233455578999999999888766322 445678899
Q ss_pred cCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHH
Q 027833 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLL 172 (218)
Q Consensus 93 ~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l 172 (218)
+.||++|.++.-.- .++...+-++. ..|+++|++=|-+..........++..+ +..|++
T Consensus 242 ~~GA~~V~~~~THg-------------vfs~~a~~~l~------~s~i~~iv~Tdtip~~~~~~~~~k~~~i--sva~ll 300 (319)
T PRK04923 242 QRGALKVVAYITHP-------------VLSGPAVDNIN------NSQLDELVVTDTIPLSEAARACAKIRQL--SVAELL 300 (319)
T ss_pred HCCCCEEEEEEECc-------------ccCchHHHHHh------hCCCCEEEEeCCccCchhhcccCCeEEE--EhHHHH
Confidence 99999999987652 23334445554 4789999999987422111111245556 778999
Q ss_pred HHHHhhC
Q 027833 173 KQRLHQL 179 (218)
Q Consensus 173 ~~~l~~~ 179 (218)
++.|+..
T Consensus 301 a~~i~~~ 307 (319)
T PRK04923 301 AETIRRI 307 (319)
T ss_pred HHHHHHH
Confidence 9998764
No 24
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.29 E-value=0.012 Score=53.70 Aligned_cols=141 Identities=16% Similarity=0.086 Sum_probs=93.8
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCC-CCCeeEEEecCCCCCCeEEEEEecCCchhHHHHHHHHHhcc
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFAD-GWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALP 92 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpD-G~~E~~v~i~~~vrG~dV~Iiqs~~~pd~lmELlll~~alr 92 (218)
...++|=...++..+|+.+|+.| +.++...+-++-.+ +.-+....+..+++|++|+||..+.+.-.- +...+.+|+
T Consensus 165 ~~~vvVsPd~G~~~~A~~lA~~l-g~~~~~~~k~r~~~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~T--l~~aa~~Lk 241 (320)
T PRK02269 165 DDVVVVSPDHGGVTRARKLAQFL-KTPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDTAGT--ICHAADALA 241 (320)
T ss_pred CCcEEEEECccHHHHHHHHHHHh-CCCEEEEEecccCCCCceeEEEEeccccCCCEEEEEeeecCcHHH--HHHHHHHHH
Confidence 34455656666778999999999 88876544433222 100222345568999999999888766222 445678888
Q ss_pred cCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHH
Q 027833 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLL 172 (218)
Q Consensus 93 ~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l 172 (218)
+.||++|.++.-.- .++....-++.+ .|+++|++-|-+..... .+..++..+ +..|++
T Consensus 242 ~~GA~~V~~~~tHg-------------lf~~~a~~~l~~------~~i~~iv~Tdti~~~~~-~~~~k~~~i--sva~~l 299 (320)
T PRK02269 242 EAGATEVYASCTHP-------------VLSGPALDNIQK------SAIEKLVVLDTIYLPEE-RLIDKIEQI--SIADLL 299 (320)
T ss_pred HCCCCEEEEEEECc-------------ccCchHHHHHHh------CCCCEEEEeCCCCCccc-cccCCeEEE--EhHHHH
Confidence 99999999887652 333444455544 78999999998732111 122345566 778999
Q ss_pred HHHHhhC
Q 027833 173 KQRLHQL 179 (218)
Q Consensus 173 ~~~l~~~ 179 (218)
++.|+..
T Consensus 300 a~~i~~~ 306 (320)
T PRK02269 300 GEAIIRI 306 (320)
T ss_pred HHHHHHH
Confidence 9999764
No 25
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=97.29 E-value=0.00055 Score=56.84 Aligned_cols=76 Identities=9% Similarity=-0.016 Sum_probs=57.5
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHHHHHHhhCC--CCCCEEEEeCCcccHHHHHHH
Q 027833 124 FTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQLP--DANNLLHFRMMEPGSDSTRCW 201 (218)
Q Consensus 124 k~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~~l~~~~--~~~~~vvvsPD~Ga~~ra~~~ 201 (218)
..++++|. ..|++++-++|+||.+.++|| ..+..+ ...|.+.+++.... ..+-.+|++|+.|+...|..+
T Consensus 3 ~~~~~~l~-----~~ga~~~g~f~L~SG~~s~~y-~d~~~l--~~~p~~~~~l~~~l~~~~~~d~Vvg~~~gGi~~A~~~ 74 (170)
T PRK13811 3 NTIAELLI-----SYKAIEFGDFTLASGAKSRYY-IDIKTA--ITHPALLKEIAAEVAKRYDFDVVAGVAVGGVPLAVAV 74 (170)
T ss_pred HHHHHHHH-----HCCCEEECCEEEccCCcCCEE-EeCchh--ccCHHHHHHHHHHHHhhCCCCEEEecCcCcHHHHHHH
Confidence 46789998 899999999999999999998 233345 44555555543310 123458999999999999999
Q ss_pred HHHcCc
Q 027833 202 IISLRW 207 (218)
Q Consensus 202 a~~l~~ 207 (218)
|..||.
T Consensus 75 a~~l~~ 80 (170)
T PRK13811 75 SLAAGK 80 (170)
T ss_pred HHHHCC
Confidence 999984
No 26
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.27 E-value=0.01 Score=54.31 Aligned_cols=137 Identities=12% Similarity=0.022 Sum_probs=91.2
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCchhHHHHHHHHHhcccC
Q 027833 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRL 94 (218)
Q Consensus 15 ~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~pd~lmELlll~~alr~~ 94 (218)
..+++=...++..+|+.+++.| ++++.-....+ .+.+ +....+..+++|++|+||..+.+.-.- +...+.+|++.
T Consensus 170 ~~vvV~pd~Ga~~~A~~la~~L-~~~~~~~~~~r-~~~~-~~~~~i~gdV~gk~viIVDDIidTG~T--l~~aa~~Lk~~ 244 (323)
T PRK02458 170 DVVVVSPKNSGIKRARSLAEYL-DAPIAIIDYAQ-DDSE-REEGYIIGDVAGKKAILIDDILNTGKT--FAEAAKIVERE 244 (323)
T ss_pred ceEEEEECCChHHHHHHHHHHh-CCCEEEEEEec-CCCc-ceeeccccccCCCEEEEEcceeCcHHH--HHHHHHHHHhC
Confidence 3344555556778999999999 88876555333 2321 222234568999999999887766222 44567889999
Q ss_pred CCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHHHH
Q 027833 95 FVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQ 174 (218)
Q Consensus 95 ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~ 174 (218)
||++|.++.-.- .++.....++. ..|+++|++=|-+.... ... .++..+ +..+++++
T Consensus 245 GA~~V~~~~tHg-------------if~~~a~~~l~------~s~i~~iv~TdTi~~~~-~~~-~k~~~i--sva~lla~ 301 (323)
T PRK02458 245 GATEIYAVASHG-------------LFAGGAAEVLE------NAPIKEILVTDSVATKE-RVP-KNVTYL--SASELIAD 301 (323)
T ss_pred CCCcEEEEEECh-------------hcCchHHHHHh------hCCCCEEEEECCcCCch-hcC-CCcEEE--EhHHHHHH
Confidence 999999987653 33333433444 47999999999985321 111 234556 77899999
Q ss_pred HHhhC
Q 027833 175 RLHQL 179 (218)
Q Consensus 175 ~l~~~ 179 (218)
.|++.
T Consensus 302 ~i~~~ 306 (323)
T PRK02458 302 AIIRI 306 (323)
T ss_pred HHHHH
Confidence 98764
No 27
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=97.15 E-value=0.022 Score=51.54 Aligned_cols=135 Identities=16% Similarity=0.142 Sum_probs=91.3
Q ss_pred EEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcccCC
Q 027833 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLF 95 (218)
Q Consensus 17 ~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~alr~~g 95 (218)
+++-.-.++..+++.+++.+.+.++..+.-.+..++. +....+..++.|++|+|+..+.+. .. +...+++|++.|
T Consensus 154 vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~-~~~~~~~~~v~g~~viivDDii~TG~T---l~~a~~~l~~~G 229 (302)
T PLN02369 154 VVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV-AEVMNLIGDVKGKVAIMVDDMIDTAGT---ITKGAALLHQEG 229 (302)
T ss_pred EEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcce-eeeEecCCCCCCCEEEEEcCcccchHH---HHHHHHHHHhCC
Confidence 4444455677899999999834777766666544441 123456778999999999887665 33 344557889999
Q ss_pred CCeEEEEe--ecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHHH
Q 027833 96 VASFTLVL--PFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLK 173 (218)
Q Consensus 96 a~~ItlVi--PYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~ 173 (218)
+++|.++. |-| +...+- .|+ ..+++.+++.|-+.......|+ ++..+ +..++|+
T Consensus 230 a~~v~~~~tH~v~---------------~~~a~~-~l~-----~~~~~~iv~t~ti~~~~~~~~~-~~~~~--~v~~~la 285 (302)
T PLN02369 230 AREVYACATHAVF---------------SPPAIE-RLS-----SGLFQEVIVTNTIPVSEKNYFP-QLTVL--SVANLLG 285 (302)
T ss_pred CCEEEEEEEeeee---------------CHHHHH-HHH-----hCCCCEEEEeCCCCChhhcccC-CceEE--EHHHHHH
Confidence 99999987 443 222333 344 4689999999987532212233 56666 7789999
Q ss_pred HHHhhC
Q 027833 174 QRLHQL 179 (218)
Q Consensus 174 ~~l~~~ 179 (218)
+.++..
T Consensus 286 ~~i~~~ 291 (302)
T PLN02369 286 ETIWRV 291 (302)
T ss_pred HHHHHH
Confidence 998764
No 28
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=97.05 E-value=0.02 Score=52.31 Aligned_cols=136 Identities=15% Similarity=0.103 Sum_probs=93.7
Q ss_pred cEEEEe-cCCcHHHHHHHHHHcCCCceeeeeEeec-CCCCCeeEEEe-cCCCCCCeEEEEEecCCc-hhHHHHHHHHHhc
Q 027833 16 QVHLFY-CVECEELARKVAAQSDLITLQSINWRNF-ADGWPNLYINS-AHDIRGQHVAFLASFSSP-GVIFEQISVIYAL 91 (218)
Q Consensus 16 ~~~i~~-g~~~~~La~~Ia~~l~~~~~~~~~~~~F-pDG~~E~~v~i-~~~vrG~dV~Iiqs~~~p-d~lmELlll~~al 91 (218)
+++|+| -.+...-|+.+|+.| +.++.-++=+|- .+. |..+.. .-+|+||+++|+..+-+. .. +...+.+|
T Consensus 164 d~vVVSPD~Ggv~RAr~~A~~L-~~~~a~i~K~R~~~~~--~v~~~~~~gdV~gk~~iiVDDiIdTgGT---i~~Aa~~L 237 (314)
T COG0462 164 DPVVVSPDKGGVKRARALADRL-GAPLAIIDKRRDSSPN--VVEVMNLIGDVEGKDVVIVDDIIDTGGT---IAKAAKAL 237 (314)
T ss_pred CcEEECCCccHHHHHHHHHHHh-CCCEEEEEEeecCCCC--eEEEeecccccCCCEEEEEeccccccHH---HHHHHHHH
Confidence 444444 445667899999999 899887777775 445 555543 469999999999776544 33 35577889
Q ss_pred ccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHH
Q 027833 92 PRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPL 171 (218)
Q Consensus 92 r~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~ 171 (218)
++.||++|.+..-.= .+| .-..+.|+ ...+++||+-|-=-......++ .+..+ +..|+
T Consensus 238 k~~GAk~V~a~~tH~-------------vfs-~~a~~~l~-----~~~i~~vivTnTi~~~~~~~~~-~~~~i--sva~l 295 (314)
T COG0462 238 KERGAKKVYAAATHG-------------VFS-GAALERLE-----ASAIDEVIVTDTIPLPEKKKIP-KVSVI--SVAPL 295 (314)
T ss_pred HHCCCCeEEEEEEch-------------hhC-hHHHHHHh-----cCCCCEEEEeCCcccccccccC-ceEEE--EhHHH
Confidence 999999999876432 222 44556777 5669999998843221111222 55666 88999
Q ss_pred HHHHHhhC
Q 027833 172 LKQRLHQL 179 (218)
Q Consensus 172 l~~~l~~~ 179 (218)
++++|...
T Consensus 296 iaeaI~ri 303 (314)
T COG0462 296 IAEAIRRI 303 (314)
T ss_pred HHHHHHHH
Confidence 99999774
No 29
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.05 E-value=0.03 Score=50.83 Aligned_cols=139 Identities=19% Similarity=0.103 Sum_probs=93.3
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeE-EEecCCCCCCeEEEEEecCCchhHHHHHHHHHhccc
Q 027833 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLY-INSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPR 93 (218)
Q Consensus 15 ~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~-v~i~~~vrG~dV~Iiqs~~~pd~lmELlll~~alr~ 93 (218)
..+++=...++..+|+.+|+.| |.++...+-.+..++ +.. ..+..+++|++|+|+..+.+.-.- +...++.+++
T Consensus 159 ~~vvv~pd~Gg~~~A~~la~~L-g~~~~~~~k~r~~~~--~~~~~~~~~~~~g~~vliVDDii~TG~T--~~~a~~~l~~ 233 (309)
T PRK01259 159 NLVVVSPDVGGVVRARALAKRL-DADLAIIDKRRPRAN--VSEVMNIIGDVEGRDCILVDDMIDTAGT--LCKAAEALKE 233 (309)
T ss_pred CcEEEEECCCcHHHHHHHHHHh-CCCEEEEEeecccce--eEEEEeecccCCCCEEEEEecccCcHHH--HHHHHHHHHc
Confidence 3455555666888999999999 898876665555555 432 345568999999999888766333 2355688899
Q ss_pred CCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHHH
Q 027833 94 LFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLK 173 (218)
Q Consensus 94 ~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~ 173 (218)
.|+++|.++..+- .++....-++ . ..+++++++-|-+..........++.-+ +..++++
T Consensus 234 ~Ga~~v~~~~tH~-------------i~~~~a~~~l-~-----~~~~~~iv~t~ti~~~~~~~~~~k~~~i--sva~~ia 292 (309)
T PRK01259 234 RGAKSVYAYATHP-------------VLSGGAIERI-E-----NSVIDELVVTDSIPLSEEAKKCDKIRVL--SVAPLLA 292 (309)
T ss_pred cCCCEEEEEEEee-------------eCChHHHHHH-h-----cCCCCEEEEecCcccchhhccCCCeEEE--EcHHHHH
Confidence 9999998887421 1222333334 4 4789999999987432221111244456 7789999
Q ss_pred HHHhhC
Q 027833 174 QRLHQL 179 (218)
Q Consensus 174 ~~l~~~ 179 (218)
+.|+..
T Consensus 293 ~~i~~~ 298 (309)
T PRK01259 293 EAIRRI 298 (309)
T ss_pred HHHHHH
Confidence 999763
No 30
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=96.88 E-value=0.035 Score=52.94 Aligned_cols=136 Identities=10% Similarity=0.031 Sum_probs=92.4
Q ss_pred EEEEecCCcHHHHHHHHHHcCC------CceeeeeEeecCCCCCeeE-EEecCCCCCCeEEEEEecCCc-hhHHHHHHHH
Q 027833 17 VHLFYCVECEELARKVAAQSDL------ITLQSINWRNFADGWPNLY-INSAHDIRGQHVAFLASFSSP-GVIFEQISVI 88 (218)
Q Consensus 17 ~~i~~g~~~~~La~~Ia~~l~~------~~~~~~~~~~FpDG~~E~~-v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~ 88 (218)
++|=+-.++..-|+.+++.| + .++.-+.=.+..++ |.. ..+..++.|++|+||..+.+. ..+ .-.+
T Consensus 282 VVVsPD~Ga~~RAr~~A~~L-~~~~~~~~~~avl~K~R~~~~--~v~~~~lvgdV~Gk~vIIVDDIIdTG~Tl---~~aa 355 (439)
T PTZ00145 282 VIVSPDAGGVYRARKFQDGL-NHRGISDCGIAMLIKQRTKPN--EIEKMDLVGNVYDSDVIIVDDMIDTSGTL---CEAA 355 (439)
T ss_pred EEEccCcchHHHHHHHHHHh-ccccccCCCEEEEEeecCCCC--ceEEEeccCCCCCCEEEEEcceeCcHHHH---HHHH
Confidence 44433334567889999999 5 45655555666666 543 345679999999999888766 443 4467
Q ss_pred HhcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccccccccccccc
Q 027833 89 YALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETG 168 (218)
Q Consensus 89 ~alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~ 168 (218)
.+|++.||++|.++.-.- .++...+.++.+ +|+++|++=|-+..........++..+ +.
T Consensus 356 ~~Lk~~GA~~V~~~~THg-------------lfs~~A~~rl~~------s~i~~IvvTdTIp~~~~~~~~~k~~vi--sV 414 (439)
T PTZ00145 356 KQLKKHGARRVFAFATHG-------------LFSGPAIERIEA------SPLEEVVVTDTVKSNKNIDSCKKITKL--SV 414 (439)
T ss_pred HHHHHcCCCEEEEEEEcc-------------cCChhHHHHHhc------CCCCEEEEeCCCcCchhhcccCCeEEE--Eh
Confidence 788999999999976542 455555666654 799999999986322111112345556 77
Q ss_pred HHHHHHHHhhC
Q 027833 169 IPLLKQRLHQL 179 (218)
Q Consensus 169 ~~~l~~~l~~~ 179 (218)
.++|++.|+..
T Consensus 415 A~llAeaI~~i 425 (439)
T PTZ00145 415 SVLVADAIRRI 425 (439)
T ss_pred HHHHHHHHHHH
Confidence 89999999763
No 31
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.80 E-value=0.049 Score=50.04 Aligned_cols=142 Identities=11% Similarity=0.042 Sum_probs=94.1
Q ss_pred CcEEEE-ecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcc
Q 027833 15 KQVHLF-YCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALP 92 (218)
Q Consensus 15 ~~~~i~-~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~alr 92 (218)
.++.|+ +-.+....|+.+|+.| +.++.-++-.+...++.+ ...+..++.|++|+||..+.+. .. +...+..|+
T Consensus 168 ~~~vvVsPD~gg~~rA~~lA~~l-g~~~~vi~K~r~~~~~~~-~~~~~gdv~Gk~VIIVDDIi~TG~T---l~~aa~~Lk 242 (332)
T PRK00553 168 KDLVVVSPDYGGVKRARLIAESL-ELPLAIIDKRRPKHNVAE-SINVLGEVKNKNCLIVDDMIDTGGT---VIAAAKLLK 242 (332)
T ss_pred CCeEEEEECCCcHHHHHHHHHHh-CCCEEEEEEecCCcceEe-eEEeeccCCCCEEEEEeccccchHH---HHHHHHHHH
Confidence 344444 4445668999999999 898877666665555222 2334568999999999888766 44 344557889
Q ss_pred cCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHH
Q 027833 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLL 172 (218)
Q Consensus 93 ~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l 172 (218)
+.||++|.++.-.- .++....-++.+++- ..|+++|++=|-+.... .....++..+ +..+++
T Consensus 243 ~~GA~~V~~~atHg-------------lf~~~a~~~l~~~~~--~~~i~~iv~Tntip~~~-~~~~~~~~~v--sva~~l 304 (332)
T PRK00553 243 KQKAKKVCVMATHG-------------LFNKNAIQLFDEAFK--KKLIDKLFVSNSIPQTK-FEKKPQFKVV--DLAHLY 304 (332)
T ss_pred HcCCcEEEEEEEee-------------ecCchHHHHHHhccc--cCCCCEEEEeCCccCcc-cccCCCeEEE--EhHHHH
Confidence 99999999877542 344455555543000 35899999999974221 1111345566 778999
Q ss_pred HHHHhhC
Q 027833 173 KQRLHQL 179 (218)
Q Consensus 173 ~~~l~~~ 179 (218)
++.|...
T Consensus 305 a~~i~~~ 311 (332)
T PRK00553 305 EEVLLCY 311 (332)
T ss_pred HHHHHHH
Confidence 9998764
No 32
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.76 E-value=0.067 Score=49.15 Aligned_cols=137 Identities=16% Similarity=0.125 Sum_probs=90.8
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCchhHHHHHHHHHhcccCC
Q 027833 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRLF 95 (218)
Q Consensus 16 ~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~pd~lmELlll~~alr~~g 95 (218)
.+++-.-.+...+|+.+|+.|++.+.....-++-.++. .....+..++.|++|+|+..+.+.-.- +.-.+.+|++.|
T Consensus 181 ~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~-~~~~~~~~~v~g~~viiVDDii~TG~T--~~~a~~~L~~~G 257 (330)
T PRK02812 181 IVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNV-AEVLNVIGDVKGKTAILVDDMIDTGGT--ICEGARLLRKEG 257 (330)
T ss_pred eEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCce-eeeEeccccCCCCEEEEEccccCcHHH--HHHHHHHHhccC
Confidence 34444455567889999999933677666555544431 123445568999999999887666222 335568899999
Q ss_pred CCeEEEEe--ecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHHH
Q 027833 96 VASFTLVL--PFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLK 173 (218)
Q Consensus 96 a~~ItlVi--PYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~ 173 (218)
+++|.++. |-| +...+-++.+ .++|+|++.|-+......-|+ ++..+ +..++|+
T Consensus 258 a~~v~~~~tH~v~---------------s~~a~~~l~~------~~id~iv~tnti~~~~~~~~~-~~~~~--~va~lla 313 (330)
T PRK02812 258 AKQVYACATHAVF---------------SPPAIERLSS------GLFEEVIVTNTIPVPEERRFP-QLKVL--SVANMLG 313 (330)
T ss_pred CCeEEEEEEcccC---------------ChHHHHHHhh------CCCCEEEEeCCCCChhhcccC-CceEE--EHHHHHH
Confidence 99999988 543 3334444443 689999999998532111132 45556 7789999
Q ss_pred HHHhhC
Q 027833 174 QRLHQL 179 (218)
Q Consensus 174 ~~l~~~ 179 (218)
+.|+..
T Consensus 314 ~~i~~~ 319 (330)
T PRK02812 314 EAIWRI 319 (330)
T ss_pred HHHHHH
Confidence 998764
No 33
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=96.70 E-value=0.069 Score=50.08 Aligned_cols=141 Identities=11% Similarity=0.010 Sum_probs=90.9
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCC-----CeeEEEec-CCCCCCeEEEEEecCCc-hhHHHHHHH
Q 027833 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGW-----PNLYINSA-HDIRGQHVAFLASFSSP-GVIFEQISV 87 (218)
Q Consensus 15 ~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~-----~E~~v~i~-~~vrG~dV~Iiqs~~~p-d~lmELlll 87 (218)
..+++-+-.++...|+.+|..| +.++.-..-.+..+++ .+.+..+. .++.|++|+|+..+.+. .. +...
T Consensus 208 ~~VVVsPD~Gg~~rA~~~A~~L-g~~~ai~~K~R~~~~~~~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~T---l~~a 283 (382)
T PRK06827 208 HLMVISPDTGAMDRAKYYASVL-GVDLGLFYKRRDYSRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGS---MIDA 283 (382)
T ss_pred CcEEEEECccchHHHHHHHHHh-CCCEEEEEcccCCcccccCCCceEEEecCCcccCCCEEEEEeCCcCcHHH---HHHH
Confidence 3455555566778999999999 8888755544433220 01334443 48999999999888766 33 4556
Q ss_pred HHhcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCc--hhhhccccccccccc
Q 027833 88 IYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHA--LQERFYFSDHVLPLF 165 (218)
Q Consensus 88 ~~alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs--~~~~~~F~~~~~~l~ 165 (218)
+..|++.||++|.++...--+ + ..+-++.++++ ..++++|++=|-+- ..... ...+..+
T Consensus 284 a~~Lk~~GA~~V~~~~tH~vf-------------~-~a~~~l~~~~~--~g~i~~iv~TdTi~~~~~~~~--~~~~~~i- 344 (382)
T PRK06827 284 AKELKSRGAKKIIVAATFGFF-------------T-NGLEKFDKAYE--EGYFDRIIGTNLVYHPEELLS--KPWYIEV- 344 (382)
T ss_pred HHHHHHcCCCEEEEEEEeecC-------------h-HHHHHHHhhcc--cCCCCEEEEeCCCcCchhhcc--cCCeEEE-
Confidence 788889999999887765322 2 33444444222 34699999999652 22211 1234456
Q ss_pred cccHHHHHHHHhhC
Q 027833 166 ETGIPLLKQRLHQL 179 (218)
Q Consensus 166 ~~~~~~l~~~l~~~ 179 (218)
+..+++++.|...
T Consensus 345 -sva~llA~~I~~~ 357 (382)
T PRK06827 345 -DMSKLIARIIDAL 357 (382)
T ss_pred -EcHHHHHHHHHHH
Confidence 7789999998764
No 34
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=95.57 E-value=0.26 Score=41.31 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=61.6
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCCc--eeeeeEeecCCCCC---eeEEEe--cCCCCCCeEEEEEecCCchhHHHHHH
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDLIT--LQSINWRNFADGWP---NLYINS--AHDIRGQHVAFLASFSSPGVIFEQIS 86 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~~~--~~~~~~~~FpDG~~---E~~v~i--~~~vrG~dV~Iiqs~~~pd~lmELll 86 (218)
+..++|=-.+++-.+|..+++.| +.+ +..+...+|-||.. +..+.. +.+++|++|+||..+.+.-.-|. .
T Consensus 34 ~~~vvvgI~~Gg~~fa~~L~~~L-~~~~~v~~l~~ssY~~~~~~~~~v~i~~~~~~~v~gk~VLlVDDIiDTG~TL~--~ 110 (178)
T PRK15423 34 SDMVLVGLLRGSFMFMADLCREV-QVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLS--K 110 (178)
T ss_pred CCeEEEEEecCChHHHHHHHHHh-CCCcceeEEEEEEecCCCcccCceEEecCCCCCCCCCEEEEEeeecCchHHHH--H
Confidence 34566666788889999999999 776 55788888864310 555543 45899999999999877744444 4
Q ss_pred HHHhcccCCCCeEEEEe
Q 027833 87 VIYALPRLFVASFTLVL 103 (218)
Q Consensus 87 l~~alr~~ga~~ItlVi 103 (218)
+.+.++..|++++.+..
T Consensus 111 l~~~l~~~~~~~v~~av 127 (178)
T PRK15423 111 VREILSLREPKSLAICT 127 (178)
T ss_pred HHHHHHhCCCCEEEEEE
Confidence 44556778888884443
No 35
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=95.27 E-value=0.25 Score=41.29 Aligned_cols=86 Identities=8% Similarity=0.061 Sum_probs=58.3
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCCce--eeeeEeecCCCCC--eeEEEe--cCCCCCCeEEEEEecCCchhHHHHHHHH
Q 027833 15 KQVHLFYCVECEELARKVAAQSDLITL--QSINWRNFADGWP--NLYINS--AHDIRGQHVAFLASFSSPGVIFEQISVI 88 (218)
Q Consensus 15 ~~~~i~~g~~~~~La~~Ia~~l~~~~~--~~~~~~~FpDG~~--E~~v~i--~~~vrG~dV~Iiqs~~~pd~lmELlll~ 88 (218)
..++|-..+++..+|..+|+.| ++++ ..+...++.++.. +....+ ..+++|++|+||..+.+.-..++ -.+
T Consensus 41 ~~viV~i~~gg~~~A~~La~~l-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLIVDDIidTG~Tl~--~~~ 117 (181)
T PRK09162 41 NPLVLCVMGGGLVFTGQLLPRL-DFPLEFDYLHATRYRNETTGGELVWKVKPRESLKGRTVLVVDDILDEGHTLA--AIR 117 (181)
T ss_pred CeEEEEECCCcHHHHHHHHHHc-CCCcccCEEEEEecCCCccCCceeEecCCCCCCCCCEEEEEccccCcHHHHH--HHH
Confidence 3455656677889999999999 8774 3555566665411 222222 35789999999988876633333 345
Q ss_pred HhcccCCCCeEEEEe
Q 027833 89 YALPRLFVASFTLVL 103 (218)
Q Consensus 89 ~alr~~ga~~ItlVi 103 (218)
..|++.||++|.+..
T Consensus 118 ~~Lk~~Ga~~V~~av 132 (181)
T PRK09162 118 DRCLEMGAAEVYSAV 132 (181)
T ss_pred HHHHhCCCCEEEEEE
Confidence 567789999997765
No 36
>PLN02501 digalactosyldiacylglycerol synthase
Probab=94.48 E-value=0.7 Score=46.93 Aligned_cols=164 Identities=16% Similarity=0.121 Sum_probs=95.5
Q ss_pred EEecCCcHHHHHHHHHHcC--CCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc----hhHHHHHHHHHhcc
Q 027833 19 LFYCVECEELARKVAAQSD--LITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP----GVIFEQISVIYALP 92 (218)
Q Consensus 19 i~~g~~~~~La~~Ia~~l~--~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p----d~lmELlll~~alr 92 (218)
+-..++..+|--+||..++ |.....=-|..+.++ .+. -.+++|.|+-+-.-| .++.-|+..++-++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~r~~~ivTtAslPWmTGtavnpL~rAayLa~ 352 (794)
T PLN02501 281 LESDNHNDELDLRIASVLQSTGHCYDGGFWTDSSKH------ELS--DGKRHVAIVTTASLPWMTGTAVNPLFRAAYLAK 352 (794)
T ss_pred cccccccccchhhhhhhhhccCccccCCcccCcccc------ccc--cCCCeEEEEEcccCcccccccccHHHHHHHhcc
Confidence 3344555577778887772 111211122222222 222 225789999665556 78888888888776
Q ss_pred cCCCCeEEEEeecCCCccccccCCCCCcch-----HHHHHHHH-hcCCCCCCCCCEEEEEeCCchhhhcc---ccccccc
Q 027833 93 RLFVASFTLVLPFFPTGSFERMEEEGDVAT-----AFTMARIL-SNIPTSRGGPTSLVIYDIHALQERFY---FSDHVLP 163 (218)
Q Consensus 93 ~~ga~~ItlViPYl~YsRQDR~~~~Ge~vs-----ak~va~lL-~~~~~~~~G~d~vitvDlHs~~~~~~---F~~~~~~ 163 (218)
. |-.+||+|+|||+-+-|....-.+-.++ -..+-+.| + .+|+.. ...+..| |.....-
T Consensus 353 ~-~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~-----r~g~~~-------~~~i~fYpg~~~~~~~S 419 (794)
T PLN02501 353 S-AKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEE-----RIGFKA-------DFKISFYPGKFSKERRS 419 (794)
T ss_pred c-CCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHH-----hcCCCC-------CceEEeecchhccCCcc
Confidence 5 5689999999999765544432121222 34555677 4 677662 3333222 3333334
Q ss_pred cccccHHHHHHHHhhCCCCCCEEEEeCCc-ccHHHHHHHHHHcC
Q 027833 164 LFETGIPLLKQRLHQLPDANNLLHFRMME-PGSDSTRCWIISLR 206 (218)
Q Consensus 164 l~~~~~~~l~~~l~~~~~~~~~vvvsPD~-Ga~~ra~~~a~~l~ 206 (218)
+ -+..-+.+++... +.+-..+..|.. |...-+..||..++
T Consensus 420 I--~p~gdI~~~L~~f-~PDVVHLatP~~LGw~~~Glr~ArKl~ 460 (794)
T PLN02501 420 I--IPAGDTSQFIPSK-DADIAILEEPEHLNWYHHGKRWTDKFN 460 (794)
T ss_pred c--cchHHHHHHhhcc-CCCEEEECCchhhccHHHHHHHHHHcC
Confidence 4 4556678888763 445555677874 44434899999998
No 37
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=94.31 E-value=1.1 Score=36.80 Aligned_cols=85 Identities=11% Similarity=0.077 Sum_probs=57.4
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCCc--eeeeeEeecCCCCC---eeE--EEecCCCCCCeEEEEEecCCc-hhHHHHHH
Q 027833 15 KQVHLFYCVECEELARKVAAQSDLIT--LQSINWRNFADGWP---NLY--INSAHDIRGQHVAFLASFSSP-GVIFEQIS 86 (218)
Q Consensus 15 ~~~~i~~g~~~~~La~~Ia~~l~~~~--~~~~~~~~FpDG~~---E~~--v~i~~~vrG~dV~Iiqs~~~p-d~lmELll 86 (218)
..+++=...++..+|..+++.| +.+ +..+..+.|-|+.+ +.. ..+..++.|++|+|+..+.+. ..+.+..
T Consensus 27 ~~vvv~i~~GG~~~a~~l~~~L-~~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vlivDDii~TG~Tl~~~~- 104 (166)
T TIGR01203 27 PLVLLCVLKGSFPFFADLIRYI-AVPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLIVEDIVDTGLTLQYLL- 104 (166)
T ss_pred CeEEEEEccCCHHHHHHHHHhc-CCCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEEEEeeeeCcHHHHHHHH-
Confidence 3455555677889999999999 764 55667776654311 222 234568999999999888766 4444443
Q ss_pred HHHhcccCCCCeEEEEe
Q 027833 87 VIYALPRLFVASFTLVL 103 (218)
Q Consensus 87 l~~alr~~ga~~ItlVi 103 (218)
++|+..|+++|.++.
T Consensus 105 --~~l~~~g~~~i~~~~ 119 (166)
T TIGR01203 105 --DLLKARKPKSLKIVT 119 (166)
T ss_pred --HHHHHCCCCEEEEEE
Confidence 455677888886655
No 38
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=94.28 E-value=1 Score=38.02 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=61.9
Q ss_pred HHHhhhhhcC-CCcEEEEecCCcHHHHHHHHHHcCCC---ce--eeeeEeecCCCC---CeeEEEe---cCCCCCCeEEE
Q 027833 4 KREIKAKKSQ-KKQVHLFYCVECEELARKVAAQSDLI---TL--QSINWRNFADGW---PNLYINS---AHDIRGQHVAF 71 (218)
Q Consensus 4 ~~~~~~~~~~-~~~~~i~~g~~~~~La~~Ia~~l~~~---~~--~~~~~~~FpDG~---~E~~v~i---~~~vrG~dV~I 71 (218)
++++... .. +..++|=-.+++-.+|..+++.| +. ++ ..+..+++.+|. .+..+.. ..+++|++|+|
T Consensus 25 A~~I~~~-~~~~~~vivgi~~Gg~~fa~~L~~~L-~~~~~~~~i~fi~~~sy~~~~~~~g~~~i~~~~~~~~v~gk~Vli 102 (189)
T PLN02238 25 AAQIASD-YAGKSPVVLGVATGAFMFLADLVRAI-QPLPRGLTVDFIRASSYGGGTESSGVAKVSGADLKIDVKGKHVLL 102 (189)
T ss_pred HHHHHHH-cCCCCcEEEEEccCCHHHHHHHHHHh-CccCCCeEEEEEEeeecCCCccccCceeEecCCCCCCCCCCEEEE
Confidence 3444443 33 33555555667778999999999 76 43 456677775531 1455543 35799999999
Q ss_pred EEecCCc-hhHHHHHHHHHhcccCCCCeEEEEe
Q 027833 72 LASFSSP-GVIFEQISVIYALPRLFVASFTLVL 103 (218)
Q Consensus 72 iqs~~~p-d~lmELlll~~alr~~ga~~ItlVi 103 (218)
|-.+.+. ..+.+ +++.++..|+++|.+..
T Consensus 103 VDDIidTG~Tl~~---~~~~l~~~g~~~v~~av 132 (189)
T PLN02238 103 VEDIVDTGNTLSA---LVAHLEAKGAASVSVCA 132 (189)
T ss_pred EecccchHHHHHH---HHHHHHhCCCCEEEEEE
Confidence 9887765 33333 34667788999986664
No 39
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=94.27 E-value=2 Score=39.56 Aligned_cols=127 Identities=13% Similarity=0.039 Sum_probs=77.2
Q ss_pred HHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCchhHHHHHHHHHhcccCCCCeEEEEeecCCC
Q 027833 29 ARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRLFVASFTLVLPFFPT 108 (218)
Q Consensus 29 a~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~pd~lmELlll~~alr~~ga~~ItlViPYl~Y 108 (218)
.++.++.+.+.++.-.+=.+ +|+.+.......+++|++|+|+..+.+.-.- +...++.|++.|+++|.++.-.-
T Consensus 195 ~~ra~~~a~~~~~~~~~K~R--~g~~~~~~~~~~dv~gr~vlIVDDIidTG~T--l~~aa~~L~~~Ga~~V~~~~THg-- 268 (326)
T PLN02297 195 WKRFHKQFEHFPMVVCTKVR--EGDKRIVRIKEGNPAGRHVVIVDDLVQSGGT--LIECQKVLAAHGAAKVSAYVTHG-- 268 (326)
T ss_pred HHHHHHHcCCCCEEEEEeEE--CCCceEEEecccccCCCeEEEEecccCcHHH--HHHHHHHHHHCCCcEEEEEEECc--
Confidence 33444333256665444333 4522444445678999999999888766222 34456888899999999887652
Q ss_pred ccccccCCCCCcchHHHHHHHHhc--CCCCCCCCCEEEEEeCCchhhh--ccccccccccccccHHHHHHHHh
Q 027833 109 GSFERMEEEGDVATAFTMARILSN--IPTSRGGPTSLVIYDIHALQER--FYFSDHVLPLFETGIPLLKQRLH 177 (218)
Q Consensus 109 sRQDR~~~~Ge~vsak~va~lL~~--~~~~~~G~d~vitvDlHs~~~~--~~F~~~~~~l~~~~~~~l~~~l~ 177 (218)
.++...+-++.++ .| .+|+++|++=|-+..... .-. .++..+ +..+++++.|.
T Consensus 269 -----------lfs~~a~~~l~~~~~~~--~~~i~~iv~TdTip~~~~~~~~~-~k~~~i--sva~llAe~i~ 325 (326)
T PLN02297 269 -----------VFPNESWERFTHDNGGP--EAGFAYFWITDSCPQTVKAVRGK-APFEVL--SLAGSIADALQ 325 (326)
T ss_pred -----------ccChhHHHHHHhccccc--ccCcCEEEEcCCccCChhhcccC-CCcEEE--EcHHHHHHHhc
Confidence 3444556666651 11 269999999998732110 011 234445 66888888763
No 40
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=93.22 E-value=1.6 Score=36.85 Aligned_cols=82 Identities=10% Similarity=0.111 Sum_probs=56.0
Q ss_pred cCCCcEEEE-ecCCcHHHHHHHHHHcCCCc--eeeeeEeecC-----CCCCeeEEEe--cCCCCCCeEEEEEecCCc---
Q 027833 12 SQKKQVHLF-YCVECEELARKVAAQSDLIT--LQSINWRNFA-----DGWPNLYINS--AHDIRGQHVAFLASFSSP--- 78 (218)
Q Consensus 12 ~~~~~~~i~-~g~~~~~La~~Ia~~l~~~~--~~~~~~~~Fp-----DG~~E~~v~i--~~~vrG~dV~Iiqs~~~p--- 78 (218)
++.++++++ -..++-.|+..+.+++ +++ +..+...+|- .| +.++.- .++++|+||+||-.+-+.
T Consensus 32 y~g~~~~vv~iLkGs~~F~~dL~r~i-~~~~e~dFm~vSSYg~~t~ssg--~v~i~kDld~di~grdVLiVeDIiDsG~T 108 (178)
T COG0634 32 YGGKDPLVVGVLKGSFPFMADLIRAI-DFPLEVDFMHVSSYGGGTSSSG--EVKILKDLDEDIKGRDVLIVEDIIDSGLT 108 (178)
T ss_pred hCCCceEEEEEcccchhhHHHHHHhc-CCCceeEEEEEeccCCCcccCC--ceEEecccccCCCCCeEEEEecccccChh
Confidence 554554444 4677888999999998 655 4566777774 45 555554 589999999999887554
Q ss_pred -hhHHHHHHHHHhcccCCCCeEEEE
Q 027833 79 -GVIFEQISVIYALPRLFVASFTLV 102 (218)
Q Consensus 79 -d~lmELlll~~alr~~ga~~ItlV 102 (218)
..+.++| +..||+++.++
T Consensus 109 Ls~i~~~l------~~r~a~sv~i~ 127 (178)
T COG0634 109 LSKVRDLL------KERGAKSVRIA 127 (178)
T ss_pred HHHHHHHH------HhCCCCeEEEE
Confidence 3444444 46788887654
No 41
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=92.02 E-value=0.59 Score=39.74 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=62.1
Q ss_pred EEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCC
Q 027833 58 INSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTS 136 (218)
Q Consensus 58 v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~ 136 (218)
+.+-.+|.|++++|+..+.+. ..+ ...++.||+.||++|.++...-=.+ .... +.|+
T Consensus 75 ~~vVGDV~gk~~IIvDDiIdtg~Tl---~~aA~~Lk~~GA~~V~~~aTHgvfs-------------~~A~-~~l~----- 132 (184)
T PF14572_consen 75 MNVVGDVKGKICIIVDDIIDTGGTL---IKAAELLKERGAKKVYACATHGVFS-------------GDAP-ERLE----- 132 (184)
T ss_dssp EEEES--TTSEEEEEEEEESSTHHH---HHHHHHHHHTTESEEEEEEEEE----------------TTHH-HHHH-----
T ss_pred eEEEEEccCCeEeeecccccchHHH---HHHHHHHHHcCCCEEEEEEeCcccC-------------chHH-HHHh-----
Confidence 345579999999999888655 444 4567788999999999988764332 2232 4455
Q ss_pred CCCCCEEEEEeCCchhhhccccccccccccccHHHHHHHHhh
Q 027833 137 RGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQ 178 (218)
Q Consensus 137 ~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~~l~~ 178 (218)
...+++|++=|-.-...+..-...+.-+ +..++|++.|+.
T Consensus 133 ~s~Id~vvvTnTIp~~~~~~~~~Ki~vl--dis~llaeaI~r 172 (184)
T PF14572_consen 133 ESPIDEVVVTNTIPQEEQKLQCPKIKVL--DISPLLAEAIRR 172 (184)
T ss_dssp HSSESEEEEETTS--HHHHHH-TTEEEE----HHHHHHHHHH
T ss_pred hcCCeEEEEeccccCchhhhcCCCEeEe--ehHHHHHHHHHH
Confidence 4679999999976443322222355666 778999999865
No 42
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=91.87 E-value=2.7 Score=37.08 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=60.1
Q ss_pred HHHhhhhhcCCCcEEEEecCCcHHHHHHHHHHcCC-----------Cce---eeeeEeecCC----CCCeeEEEe--cCC
Q 027833 4 KREIKAKKSQKKQVHLFYCVECEELARKVAAQSDL-----------ITL---QSINWRNFAD----GWPNLYINS--AHD 63 (218)
Q Consensus 4 ~~~~~~~~~~~~~~~i~~g~~~~~La~~Ia~~l~~-----------~~~---~~~~~~~FpD----G~~E~~v~i--~~~ 63 (218)
++++...-.++..++|--.+++-.|+..+.+.| + .++ ..+..+.|-| | |+.+.. ..+
T Consensus 71 A~~I~~dy~~~~~vilgILkGg~~FaadL~~~L-~~~~~~~~~~~~~~~~~~dfi~vsSY~~~~s~g--~v~i~~~~~~~ 147 (241)
T PTZ00149 71 AYDIKQVYGNEELHILCILKGSRGFFSALVDYL-NRIHNYSSTESPKPPYQEHYVRVKSYCNDESTG--KLEIVSDDLSC 147 (241)
T ss_pred HHHHHHHcCCCCeEEEEECCCCHHHHHHHHHHH-hhhhhccccccCcccccccEEEEEEccCCCcCC--ceEEecccccc
Confidence 344544312334455555677778888888888 4 123 6677777755 5 565543 246
Q ss_pred CCCCeEEEEEecCCc-hhHHHHHHHHHhcccCCCCeEEEEe
Q 027833 64 IRGQHVAFLASFSSP-GVIFEQISVIYALPRLFVASFTLVL 103 (218)
Q Consensus 64 vrG~dV~Iiqs~~~p-d~lmELlll~~alr~~ga~~ItlVi 103 (218)
+.|++|+||-.+.+. ..+.+++ +.|++.|+++|.+..
T Consensus 148 l~gk~VLIVDDIidTG~Tl~~~~---~~L~~~g~~~V~va~ 185 (241)
T PTZ00149 148 LKDKHVLIVEDIIDTGNTLVKFC---EYLKKFEPKTIRIAT 185 (241)
T ss_pred cCCCEEEEEEeEeChHHHHHHHH---HHHHhcCCCEEEEEE
Confidence 899999999888766 3333333 556778999986654
No 43
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=91.83 E-value=1.6 Score=37.24 Aligned_cols=86 Identities=13% Similarity=0.066 Sum_probs=59.3
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCC-CCC-eeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcc
Q 027833 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFAD-GWP-NLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALP 92 (218)
Q Consensus 16 ~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpD-G~~-E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~alr 92 (218)
.+.|=-.+++..+++.+++.+...+++.+...+... +++ +.+.+++.++.|++|+|+..+-.. ..+. ..++.|+
T Consensus 72 ~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~---~ai~~L~ 148 (209)
T PRK00129 72 LVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATGGSAI---AAIDLLK 148 (209)
T ss_pred EEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccchHHHH---HHHHHHH
Confidence 344445677889999999999336777776655422 211 247778889999999999877554 3333 3445566
Q ss_pred cCCCCeEEEEee
Q 027833 93 RLFVASFTLVLP 104 (218)
Q Consensus 93 ~~ga~~ItlViP 104 (218)
+.|+++|.++.-
T Consensus 149 ~~G~~~I~~~~l 160 (209)
T PRK00129 149 KRGAKNIKVLCL 160 (209)
T ss_pred HcCCCEEEEEEE
Confidence 778999987764
No 44
>PLN02440 amidophosphoribosyltransferase
Probab=91.33 E-value=2.3 Score=40.97 Aligned_cols=123 Identities=11% Similarity=0.096 Sum_probs=78.1
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCCceee-eeEeecC------------CCCCeeEEEec---CCCCCCeEEEEEecCCc
Q 027833 15 KQVHLFYCVECEELARKVAAQSDLITLQS-INWRNFA------------DGWPNLYINSA---HDIRGQHVAFLASFSSP 78 (218)
Q Consensus 15 ~~~~i~~g~~~~~La~~Ia~~l~~~~~~~-~~~~~Fp------------DG~~E~~v~i~---~~vrG~dV~Iiqs~~~p 78 (218)
..++|---.++..+|..+++.+ ++++.. ....++. ++ ....++. ..++|++|+||......
T Consensus 276 ~d~vvpVP~s~~~~A~~la~~l-giP~~~~lvr~ry~~rt~i~~~q~~r~~--~~~~k~~~~~~~v~gk~VlLVDDiitt 352 (479)
T PLN02440 276 CDVVIPVPDSGRVAALGYAAKL-GVPFQQGLIRSHYVGRTFIEPSQKIRDF--SVKLKLNPVRSVLEGKRVVVVDDSIVR 352 (479)
T ss_pred CCEEEEeCCcHHHHHHHHHHHh-CCCchhheEEEeeccccccCcchhhhhh--hheeeeecccccccCceEEEEeceeCc
Confidence 3455444455667899999999 888642 1113332 12 2333332 46899999999776555
Q ss_pred hhHHHHHHHHHhcccCCCCeEEEEee--------cCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCc
Q 027833 79 GVIFEQISVIYALPRLFVASFTLVLP--------FFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHA 150 (218)
Q Consensus 79 d~lmELlll~~alr~~ga~~ItlViP--------Yl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs 150 (218)
-.-++ -+++.|+++||++|.+.+- |++..-.||.+.-|--.+..-+++.|. +|++..+.+..
T Consensus 353 GtTl~--~i~~~L~~aGa~~V~v~v~~p~~~~p~~~G~d~p~~~~li~~~~~~~ei~~~~~--------~dsl~~l~~~~ 422 (479)
T PLN02440 353 GTTSS--KIVRMLREAGAKEVHMRIASPPIIASCYYGVDTPSREELISNRMSVEEIRKFIG--------CDSLAFLPLED 422 (479)
T ss_pred HHHHH--HHHHHHHhcCCCEEEEEEECCcccccceeeccCCCHHHHhhcCCCHHHHHHHhC--------CCEEEEecHHH
Confidence 33332 2557788999999876643 344566666665566677777777774 78887776653
No 45
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=89.38 E-value=3 Score=35.55 Aligned_cols=83 Identities=12% Similarity=0.050 Sum_probs=58.0
Q ss_pred EEecCCcHHHHHHHHHHcCCCceeeeeEeecC-CCCC-eeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcccCC
Q 027833 19 LFYCVECEELARKVAAQSDLITLQSINWRNFA-DGWP-NLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLF 95 (218)
Q Consensus 19 i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~Fp-DG~~-E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~alr~~g 95 (218)
+=-.+++..|++.+.+.+...+++.+...+.. .+++ +.+.++++++.|++|+|+..+-.. ..+ ..+++.|++.|
T Consensus 73 V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl---~~ai~~L~~~G 149 (207)
T TIGR01091 73 VPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATGGTM---IAALDLLKKRG 149 (207)
T ss_pred EEEeCCcHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccchHHH---HHHHHHHHHcC
Confidence 33356788999999999943677766665532 2322 247778889999999999777554 333 34456667889
Q ss_pred CCeEEEEee
Q 027833 96 VASFTLVLP 104 (218)
Q Consensus 96 a~~ItlViP 104 (218)
+++|.++..
T Consensus 150 ~~~I~v~~l 158 (207)
T TIGR01091 150 AKKIKVLSI 158 (207)
T ss_pred CCEEEEEEE
Confidence 999988766
No 46
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=89.25 E-value=2.5 Score=40.38 Aligned_cols=88 Identities=11% Similarity=0.072 Sum_probs=53.6
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCCceeeeeE-eecC-----CC---CC----eeEEEe-cCCCCCCeEEEEEecCCchh
Q 027833 15 KQVHLFYCVECEELARKVAAQSDLITLQSINW-RNFA-----DG---WP----NLYINS-AHDIRGQHVAFLASFSSPGV 80 (218)
Q Consensus 15 ~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~-~~Fp-----DG---~~----E~~v~i-~~~vrG~dV~Iiqs~~~pd~ 80 (218)
.++++..-.+....|..+|+.| ++++...-. +++. +. ++ ...+.. .+.+.||+|+||......-.
T Consensus 276 ~d~Vv~vPd~g~~~A~~~A~~l-gip~~~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~gK~VlLVDDvitTG~ 354 (445)
T PRK08525 276 ADFVVPVPDSGVPAAIGYAQES-GIPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEGKRIVVIDDSIVRGT 354 (445)
T ss_pred CCeEEECCchHHHHHHHHHHHh-CCCccceEEEeeccccccCCHHHHHHhhheeEEecccccccCCCeEEEEecccCcHH
Confidence 3444444444567899999999 887632111 2221 11 01 122222 34589999999987765533
Q ss_pred HHHHHHHHHhcccCCCCeEEEEeec
Q 027833 81 IFEQISVIYALPRLFVASFTLVLPF 105 (218)
Q Consensus 81 lmELlll~~alr~~ga~~ItlViPY 105 (218)
-|. -++.+||+.||++|.+.+..
T Consensus 355 Tl~--~a~~~Lr~aGA~~V~v~~~h 377 (445)
T PRK08525 355 TSK--KIVSLLRAAGAKEIHLRIAC 377 (445)
T ss_pred HHH--HHHHHHHhcCCCEEEEEEEC
Confidence 332 36688999999999887643
No 47
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=89.22 E-value=6.3 Score=34.05 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=55.7
Q ss_pred cEEEEecCCcHHHHHHHHHHcCC---C--ceeeeeEeecCCCCC---eeEEE--ecCCCCCCeEEEEEecCCchhHHHHH
Q 027833 16 QVHLFYCVECEELARKVAAQSDL---I--TLQSINWRNFADGWP---NLYIN--SAHDIRGQHVAFLASFSSPGVIFEQI 85 (218)
Q Consensus 16 ~~~i~~g~~~~~La~~Ia~~l~~---~--~~~~~~~~~FpDG~~---E~~v~--i~~~vrG~dV~Iiqs~~~pd~lmELl 85 (218)
.++|=-.+++-.+|..+++.| + + ++..+....|-||.. +..+. +..+++|++|+||-.+.+.-.-| .
T Consensus 59 ~vivgVlkGg~~fa~dL~r~L-~~~~~~~~vdfi~vssY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDTG~TL--~ 135 (211)
T PTZ00271 59 LYLLCVLKGSFIFTADLARFL-ADEGVPVKVEFICASSYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDSAITL--Q 135 (211)
T ss_pred eEEEEEcCCCHHHHHHHHHHh-cccCCCeeEEEEEEEecCCCCcccCceEEecCCCCCCCCCEEEEEecccCCHHHH--H
Confidence 345555778889999999998 5 3 467788888865411 33432 35689999999998876652222 2
Q ss_pred HHHHhcccCCCCeE-EEEe
Q 027833 86 SVIYALPRLFVASF-TLVL 103 (218)
Q Consensus 86 ll~~alr~~ga~~I-tlVi 103 (218)
.+++.+++.++++| ++++
T Consensus 136 ~v~~~l~~~~p~svk~avL 154 (211)
T PTZ00271 136 YLMRFMLAKKPASLKTVVL 154 (211)
T ss_pred HHHHHHHhcCCCEEEEEEE
Confidence 23344555678888 4443
No 48
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=88.95 E-value=5.5 Score=32.87 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=52.1
Q ss_pred CcEEEEecCCcHHHHHHHHHHcC---C--CceeeeeEeecCCCCC---ee-E---EEecCCCCCCeEEEEEecCCc-hhH
Q 027833 15 KQVHLFYCVECEELARKVAAQSD---L--ITLQSINWRNFADGWP---NL-Y---INSAHDIRGQHVAFLASFSSP-GVI 81 (218)
Q Consensus 15 ~~~~i~~g~~~~~La~~Ia~~l~---~--~~~~~~~~~~FpDG~~---E~-~---v~i~~~vrG~dV~Iiqs~~~p-d~l 81 (218)
..+++--..++..+|..+++.|+ + +++..+....|-|+.. +. . ..+..++.|++|+||..+.+. ..+
T Consensus 32 ~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG~Tl 111 (176)
T PRK05205 32 NLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLTKKGLHPQVKPTDIPFDIEGKRVILVDDVLYTGRTI 111 (176)
T ss_pred CeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCccccCcccccccccCCCCCCCCEEEEEecccCcHHHH
Confidence 34555556667888999999882 1 2355555566655310 11 1 234557999999999887666 333
Q ss_pred HHHHHHHHhcccCC-CCeEEEEe
Q 027833 82 FEQISVIYALPRLF-VASFTLVL 103 (218)
Q Consensus 82 mELlll~~alr~~g-a~~ItlVi 103 (218)
.+ +++.|++.| +++|.++.
T Consensus 112 ~~---~~~~L~~~G~~~~v~~av 131 (176)
T PRK05205 112 RA---ALDALFDYGRPARVQLAV 131 (176)
T ss_pred HH---HHHHHHhcCCCcEEEEEE
Confidence 33 345666777 67764443
No 49
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=88.77 E-value=11 Score=31.72 Aligned_cols=77 Identities=14% Similarity=0.053 Sum_probs=51.2
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecC-CCCCCeEEEEEecCCc-hhHHHHHHHHHhc
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAH-DIRGQHVAFLASFSSP-GVIFEQISVIYAL 91 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~-~vrG~dV~Iiqs~~~p-d~lmELlll~~al 91 (218)
+.++++=...+.-.+|..+|..| +.+.... ++. .| +..+.-.. ..+|++|+||..+.+. ..+.+.. +.+
T Consensus 58 ~~d~Ivgi~~gGi~~A~~la~~L-~~~~i~~--~k~-~~--~~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~---~~l 128 (187)
T TIGR01367 58 KVDFIVGPAMGGVILGYEVARQL-SVRSIFA--ERE-GG--GMKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAI---RAI 128 (187)
T ss_pred CCCEEEEEccCcHHHHHHHHHHh-CCCeEEE--EEe-CC--cEEEeecccCCCCCEEEEEEeeecchHHHHHHH---HHH
Confidence 34555545567888999999999 8886433 332 26 66655443 3589999999888766 4443333 446
Q ss_pred ccCCCCeE
Q 027833 92 PRLFVASF 99 (218)
Q Consensus 92 r~~ga~~I 99 (218)
++.|++.+
T Consensus 129 ~~~Ga~vv 136 (187)
T TIGR01367 129 EGQGGQVV 136 (187)
T ss_pred HHcCCeEE
Confidence 78898766
No 50
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=88.67 E-value=3.7 Score=33.65 Aligned_cols=82 Identities=11% Similarity=-0.059 Sum_probs=48.4
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCCceeeeeEeec------------CCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHH
Q 027833 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNF------------ADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIF 82 (218)
Q Consensus 16 ~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~F------------pDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lm 82 (218)
..++=...+.-.+|..+|+.| +++...+.-... .+|+..+.+......+|++|+||..+... ..+.
T Consensus 48 d~ivgi~~~G~~~A~~la~~L-~~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl~ 126 (169)
T TIGR01090 48 DYIVGPEARGFIFGAALAYKL-GVGFVPVRKPGKLPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTAE 126 (169)
T ss_pred CEEEeehhccHHHHHHHHHHH-CCCEEEEEeCCCCCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHHH
Confidence 333333345568999999999 888754332221 23311233332345689999999777655 3333
Q ss_pred HHHHHHHhcccCCCCeEEE
Q 027833 83 EQISVIYALPRLFVASFTL 101 (218)
Q Consensus 83 ELlll~~alr~~ga~~Itl 101 (218)
+ +++.+++.|++.+.+
T Consensus 127 ~---a~~~L~~~Ga~~v~~ 142 (169)
T TIGR01090 127 A---TDELIRKLGGEVVEA 142 (169)
T ss_pred H---HHHHHHHcCCEEEEE
Confidence 3 445666788876543
No 51
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=87.95 E-value=5.6 Score=33.50 Aligned_cols=81 Identities=15% Similarity=0.037 Sum_probs=50.5
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcc
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALP 92 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~alr 92 (218)
...+++=...++-.+|..+|..| +.++....-....-|+ +..+. ....+|++|+||..+-+. ..+.+. ++.++
T Consensus 64 ~~d~Ivgi~~gG~~~A~~la~~L-~~~~~~~rk~~~~~g~-~~~~~-~~~~~g~~VliVDDvi~tG~Tl~~~---~~~l~ 137 (202)
T PRK00455 64 EFDVVAGPATGGIPLAAAVARAL-DLPAIFVRKEAKDHGE-GGQIE-GRRLFGKRVLVVEDVITTGGSVLEA---VEAIR 137 (202)
T ss_pred CCCEEEecccCcHHHHHHHHHHh-CCCEEEEecccCCCCC-CceEE-ccCCCCCEEEEEecccCCcHHHHHH---HHHHH
Confidence 33455544567888999999999 8887654332223331 12222 235679999999887665 444444 45566
Q ss_pred cCCCCeEE
Q 027833 93 RLFVASFT 100 (218)
Q Consensus 93 ~~ga~~It 100 (218)
+.|++.+.
T Consensus 138 ~~Ga~~v~ 145 (202)
T PRK00455 138 AAGAEVVG 145 (202)
T ss_pred HcCCEEEE
Confidence 77876653
No 52
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=87.69 E-value=3.9 Score=39.59 Aligned_cols=117 Identities=14% Similarity=0.132 Sum_probs=73.3
Q ss_pred CCcHHHHHHHHHHcCCCceeeeeE------eec--CC-CCCeeEEE-----ecCCCCCCeEEEEEecCCchhHHHHHHHH
Q 027833 23 VECEELARKVAAQSDLITLQSINW------RNF--AD-GWPNLYIN-----SAHDIRGQHVAFLASFSSPGVIFEQISVI 88 (218)
Q Consensus 23 ~~~~~La~~Ia~~l~~~~~~~~~~------~~F--pD-G~~E~~v~-----i~~~vrG~dV~Iiqs~~~pd~lmELlll~ 88 (218)
+++..+|..+|+.+ ++++..--+ ++| |+ .+++..++ +...++|++|+||...-.--.-+. -++
T Consensus 294 nqa~~lA~~la~~l-gip~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~~~~~~gk~vllVDDvittG~T~~--~~~ 370 (484)
T PRK07272 294 NSSLSAASGYAEES-GLPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVKGKRVVMVDDSIVRGTTSR--RIV 370 (484)
T ss_pred HHHHHHHHHHHHHH-CCCcccCeEEEccCCccccCCCHHHHHHHHhhCccccccccCCCEEEEEccccCchHHHH--HHH
Confidence 44557899999999 888743211 244 23 11222222 235688999999977644422222 356
Q ss_pred HhcccCCCCeEEEEee--------cCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCc
Q 027833 89 YALPRLFVASFTLVLP--------FFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHA 150 (218)
Q Consensus 89 ~alr~~ga~~ItlViP--------Yl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs 150 (218)
.+|+++||++|.+.+- |++..+++|.-.-..--+...+++.| |+|.+..+.+..
T Consensus 371 ~~L~~~Ga~~v~~~~~~p~~~~~c~ygid~~~~~~lia~~~~~~ei~~~~--------~~dsl~~~~~~~ 432 (484)
T PRK07272 371 QLLKEAGAKEVHVAIASPELKYPCFYGIDIQTRRELISANHSVEEICDII--------GADSLTYLSVDG 432 (484)
T ss_pred HHHHhcCCcEEEEEEeCCccccChhhhccCcCHHHHHhcCCCHHHHHHHh--------CCCEEEEecHHH
Confidence 7788999999998887 77777777663223334556666665 467777776643
No 53
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=87.19 E-value=7.4 Score=31.98 Aligned_cols=80 Identities=15% Similarity=0.060 Sum_probs=47.7
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCCceeeeeEee-cC-----------CCCCeeEEEecCCCCCCeEEEEEecCCc-hhHH
Q 027833 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRN-FA-----------DGWPNLYINSAHDIRGQHVAFLASFSSP-GVIF 82 (218)
Q Consensus 16 ~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~-Fp-----------DG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lm 82 (218)
..++=...+.-.+|..+|..| +.++..+.-.+ ++ .|+..+++.-...++|++|+||..+.+. ..+
T Consensus 53 d~Ivgv~~~Gi~~a~~la~~l-~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~Tl- 130 (175)
T PRK02304 53 DKIVGIEARGFIFGAALAYKL-GIGFVPVRKPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTL- 130 (175)
T ss_pred CEEEEEccchHHHHHHHHHHh-CCCEEEEEcCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHHH-
Confidence 344434455668999999999 88875432211 11 1311233322234889999999888666 333
Q ss_pred HHHHHHHhcccCCCCeE
Q 027833 83 EQISVIYALPRLFVASF 99 (218)
Q Consensus 83 ELlll~~alr~~ga~~I 99 (218)
.-+++.+++.|++.+
T Consensus 131 --~~~~~~l~~~Ga~~v 145 (175)
T PRK02304 131 --EAAIKLLERLGAEVV 145 (175)
T ss_pred --HHHHHHHHHcCCEEE
Confidence 334455678888654
No 54
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=86.51 E-value=5.9 Score=32.72 Aligned_cols=83 Identities=17% Similarity=0.068 Sum_probs=53.9
Q ss_pred EEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcccCC
Q 027833 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLF 95 (218)
Q Consensus 17 ~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~alr~~g 95 (218)
.++=...+.-.+|..+|..| |.+...+.-.....| +..... .+++|++|+||..+-+. ..+.+ .++.++++|
T Consensus 59 ~Vvg~~~gGi~~A~~~a~~l-~~p~~~~rK~~k~~g--~~~~~~-g~~~g~~VlIVDDvi~TG~T~~~---~~~~l~~~G 131 (170)
T PRK13811 59 VVAGVAVGGVPLAVAVSLAA-GKPYAIIRKEAKDHG--KAGLII-GDVKGKRVLLVEDVTTSGGSALY---GIEQLRAAG 131 (170)
T ss_pred EEEecCcCcHHHHHHHHHHH-CCCEEEEecCCCCCC--CcceEE-cccCCCEEEEEEecccccHHHHH---HHHHHHHCC
Confidence 33333344668999999999 899876665555667 544433 35899999999887655 55444 445566777
Q ss_pred CCeEEEEeecCC
Q 027833 96 VASFTLVLPFFP 107 (218)
Q Consensus 96 a~~ItlViPYl~ 107 (218)
| +++-++-.+-
T Consensus 132 a-~v~~~~~~vd 142 (170)
T PRK13811 132 A-VVDDVVTVVD 142 (170)
T ss_pred C-eEEEEEEEEE
Confidence 6 4444444443
No 55
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=86.15 E-value=11 Score=36.52 Aligned_cols=121 Identities=17% Similarity=0.049 Sum_probs=68.9
Q ss_pred EEEEecCCcHHHHHHHHHHcCCCceeeee-EeecCC--------CCCeeEEEe-----cCCCCCCeEEEEEecCCchhHH
Q 027833 17 VHLFYCVECEELARKVAAQSDLITLQSIN-WRNFAD--------GWPNLYINS-----AHDIRGQHVAFLASFSSPGVIF 82 (218)
Q Consensus 17 ~~i~~g~~~~~La~~Ia~~l~~~~~~~~~-~~~FpD--------G~~E~~v~i-----~~~vrG~dV~Iiqs~~~pd~lm 82 (218)
++|--..++..+|..+++.+ ++++...- ..+|-. .+++..+++ .+.++|++|++|......-.-+
T Consensus 298 ~Vv~VP~sg~~~A~~la~~l-gip~~~~lir~~y~grt~i~~~q~~r~~~v~~k~~~~~~~~~gk~vvlvDD~i~tG~Tl 376 (479)
T PRK09123 298 VVVPVPDSGVPAAIGYAQES-GIPFELGIIRNHYVGRTFIQPTQQIRNLGVKLKHNANRAVIEGKRVVLVDDSIVRGTTS 376 (479)
T ss_pred EEEEcCccHHHHHHHHHHhc-CCCeeheEEEEeecCccccccccccccccEEEEecccccccCCCEEEEEeceeCchHHH
Confidence 43333344557899999999 88875311 223321 112333443 2347899999998775552222
Q ss_pred HHHHHHHhcccCCCCeEEEEe-----ecCCCcc---ccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeC
Q 027833 83 EQISVIYALPRLFVASFTLVL-----PFFPTGS---FERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDI 148 (218)
Q Consensus 83 ELlll~~alr~~ga~~ItlVi-----PYl~YsR---QDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDl 148 (218)
.-+++.|++.||++|.+.+ -|=.|.- .+|.-.-+--.+..-+++.| |+|.+..+.+
T Consensus 377 --~~~~~~l~~~Ga~~v~~~~~~p~~~~~~~~gid~~~~~~l~~~~~~~~ei~~~i--------gadsl~yls~ 440 (479)
T PRK09123 377 --RKIVQMLRDAGAKEVHLRIASPPITHPCFYGIDTPERSKLLAATHSLEEMAEYI--------GADSLAFLSI 440 (479)
T ss_pred --HHHHHHHHHcCCCEEEEEEcCCCCccceeecCCCCCHHHHHHcCCCHHHHHHHh--------CCCeEeccCH
Confidence 2467788999999999988 3433333 33331112223455555555 4566655443
No 56
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=85.51 E-value=13 Score=27.81 Aligned_cols=84 Identities=20% Similarity=0.135 Sum_probs=53.5
Q ss_pred EEEEecCCcHHHHHHHHHHcCCCceeeeeEe----------ecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHH
Q 027833 17 VHLFYCVECEELARKVAAQSDLITLQSINWR----------NFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQI 85 (218)
Q Consensus 17 ~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~----------~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELl 85 (218)
.++=-..+.-.+|..++..| +.+....... .-..+-..........+.|++|+||..+.+. ..+.+.
T Consensus 30 ~ivgi~~~G~~~a~~la~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~vliVDDvi~tG~Tl~~~- 107 (125)
T PF00156_consen 30 VIVGIPRGGIPLAAALARAL-GIPLVFVRKRKSYYPGSDKTSREKNNQELFIIDKEDIKGKRVLIVDDVIDTGGTLKEA- 107 (125)
T ss_dssp EEEEETTTTHHHHHHHHHHH-THEEEEEEEEEEEESEEEEEEEETEEEEEEEEESSSGTTSEEEEEEEEESSSHHHHHH-
T ss_pred EEEeehhccHHHHHHHHHHh-CCCccceeeeecccccchhhhhccCceEEeecccccccceeEEEEeeeEcccHHHHHH-
Confidence 44434556778999999999 7876433321 1111100233344688999999999988666 555443
Q ss_pred HHHHhcccCCCCeEEEEee
Q 027833 86 SVIYALPRLFVASFTLVLP 104 (218)
Q Consensus 86 ll~~alr~~ga~~ItlViP 104 (218)
++.|++.|++.|.+..+
T Consensus 108 --~~~L~~~g~~~v~~~vl 124 (125)
T PF00156_consen 108 --IELLKEAGAKVVGVAVL 124 (125)
T ss_dssp --HHHHHHTTBSEEEEEEE
T ss_pred --HHHHHhCCCcEEEEEEE
Confidence 44666889998876653
No 57
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=85.04 E-value=1.2 Score=36.63 Aligned_cols=39 Identities=10% Similarity=-0.000 Sum_probs=30.6
Q ss_pred HHHHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCc
Q 027833 169 IPLLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRW 207 (218)
Q Consensus 169 ~~~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~ 207 (218)
...+++.+.+....++++||+|+.||+.+|+.+++.|+.
T Consensus 12 i~~lA~~I~~~~~~~~~vvv~i~~GG~~~a~~l~~~L~~ 50 (166)
T TIGR01203 12 IAELAKQITEDYAGKPLVLLCVLKGSFPFFADLIRYIAV 50 (166)
T ss_pred HHHHHHHHHHHcCCCCeEEEEEccCCHHHHHHHHHhcCC
Confidence 445666665432346899999999999999999999985
No 58
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=84.55 E-value=6.2 Score=37.73 Aligned_cols=84 Identities=15% Similarity=0.094 Sum_probs=52.9
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCCceeeeeEeec--------CCCCCeeEEEe-----cCCCCCCeEEEEEecCCchhHH
Q 027833 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNF--------ADGWPNLYINS-----AHDIRGQHVAFLASFSSPGVIF 82 (218)
Q Consensus 16 ~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~F--------pDG~~E~~v~i-----~~~vrG~dV~Iiqs~~~pd~lm 82 (218)
.+++-.-.+...+|..+|+.+ |+++...-.++. |.. ++..+++ ...++|++|+||...-.--.-+
T Consensus 273 D~Vv~VPdsg~~~A~~~a~~l-gip~~~~l~k~r~~~rtfi~~~q-r~~~~~~k~~~~~~~v~gk~VlLVDD~IttGtTl 350 (442)
T PRK08341 273 DVVIAVPDSGRTAALGFAHES-GIPYMEGLIKNRYIGRTFIMPSG-RELKVKLKLSPVREVINGKRVVLVDDSIVRGTTM 350 (442)
T ss_pred ceEEEecCchHHHHHHHHHHh-CCCchheEEEeccccccccCcCc-hhhhheeeecccccccCCCEEEEEeeeeccHHHH
Confidence 344433344446899999999 898864333322 111 2433322 3567999999997765443333
Q ss_pred HHHHHHHhcccCCCCeEEEEe
Q 027833 83 EQISVIYALPRLFVASFTLVL 103 (218)
Q Consensus 83 ELlll~~alr~~ga~~ItlVi 103 (218)
. -++.+|+++||++|.+.+
T Consensus 351 ~--~~~~~L~~aGAk~V~~~~ 369 (442)
T PRK08341 351 K--RIVKMLRDAGAREVHVRI 369 (442)
T ss_pred H--HHHHHHHhcCCcEEEEEE
Confidence 2 266888899999998876
No 59
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=84.47 E-value=4.5 Score=38.86 Aligned_cols=86 Identities=9% Similarity=-0.004 Sum_probs=53.1
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCCceeee-eEeec-------CCC-CCeeEEEe-----cCCCCCCeEEEEEecCCchhH
Q 027833 16 QVHLFYCVECEELARKVAAQSDLITLQSI-NWRNF-------ADG-WPNLYINS-----AHDIRGQHVAFLASFSSPGVI 81 (218)
Q Consensus 16 ~~~i~~g~~~~~La~~Ia~~l~~~~~~~~-~~~~F-------pDG-~~E~~v~i-----~~~vrG~dV~Iiqs~~~pd~l 81 (218)
.+++-.-.+...+|..+|+.+ ++++... ...++ |+. .++..+++ ...++|++|++|.....--.-
T Consensus 290 D~Vv~vPdsg~~~A~~~A~~l-gip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~gk~VlLVDD~ItTGtT 368 (469)
T PRK05793 290 DIVIGVPDSGIPAAIGYAEAS-GIPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGKRVVLIDDSIVRGTT 368 (469)
T ss_pred CEEEEcCccHHHHHHHHHHHh-CCCEeeeEEEeeeccccccChhHhhhhhhheEecccCccccCCCEEEEEccccCchHH
Confidence 344434444567899999999 8998542 11121 221 11222222 256899999999776555333
Q ss_pred HHHHHHHHhcccCCCCeEEEEee
Q 027833 82 FEQISVIYALPRLFVASFTLVLP 104 (218)
Q Consensus 82 mELlll~~alr~~ga~~ItlViP 104 (218)
|. -++.+||++||++|.+.+.
T Consensus 369 l~--~~~~~Lr~aGAk~V~~~~~ 389 (469)
T PRK05793 369 SK--RLVELLRKAGAKEVHFRVS 389 (469)
T ss_pred HH--HHHHHHHHcCCCEEEEEEE
Confidence 32 3778889999999988763
No 60
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=84.36 E-value=1.9 Score=35.91 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=31.7
Q ss_pred cHHHHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCc
Q 027833 168 GIPLLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRW 207 (218)
Q Consensus 168 ~~~~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~ 207 (218)
....++..+.+....++++||+|+.||...|+.+|+.|+.
T Consensus 25 ~i~~la~~i~~~~~~~~~viV~i~~gg~~~A~~La~~l~~ 64 (181)
T PRK09162 25 AIDRMADEITADLADENPLVLCVMGGGLVFTGQLLPRLDF 64 (181)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHHcCC
Confidence 3455677765533456789999999999999999999986
No 61
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=83.71 E-value=9.3 Score=32.33 Aligned_cols=84 Identities=14% Similarity=0.048 Sum_probs=52.6
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCC---eeEEEe-cCCCCCCeEEEEEecCCc-hhHHHHHHHHHh
Q 027833 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWP---NLYINS-AHDIRGQHVAFLASFSSP-GVIFEQISVIYA 90 (218)
Q Consensus 16 ~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~---E~~v~i-~~~vrG~dV~Iiqs~~~p-d~lmELlll~~a 90 (218)
.+++=...+.-.+|..+|..| +.++....-+++..|+. +..+.. ...++|++|+||..+.+. ..+.+.. +.
T Consensus 87 D~Ivgi~~gG~~~A~~lA~~L-~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDDVitTG~Tl~~ai---~~ 162 (200)
T PRK02277 87 DVVVGIAKSGVPLATLVADEL-GKDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITSGTTMKETI---EY 162 (200)
T ss_pred CEEEeeccCCHHHHHHHHHHh-CCCcEEEecccccccccccccceeccccccCCcCEEEEEeeccCchHHHHHHH---HH
Confidence 444444456778999999999 88876555444433310 111111 135789999999887665 5554444 45
Q ss_pred cccCCCCeEEEEe
Q 027833 91 LPRLFVASFTLVL 103 (218)
Q Consensus 91 lr~~ga~~ItlVi 103 (218)
+++.|++.+.++.
T Consensus 163 l~~~Ga~~v~v~v 175 (200)
T PRK02277 163 LKEHGGKPVAVVV 175 (200)
T ss_pred HHHcCCEEEEEEE
Confidence 6788987775443
No 62
>PLN02293 adenine phosphoribosyltransferase
Probab=83.70 E-value=17 Score=30.63 Aligned_cols=83 Identities=11% Similarity=-0.014 Sum_probs=49.0
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCC------------CCeeEEEecCCCCCCeEEEEEecCCc-hhHH
Q 027833 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADG------------WPNLYINSAHDIRGQHVAFLASFSSP-GVIF 82 (218)
Q Consensus 16 ~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG------------~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lm 82 (218)
..++=.....-.||..+|..| +.++..+.-.+..+| +.-+.++...-.+|++|+||..+-.. ..+.
T Consensus 64 d~Ivg~e~~Gi~lA~~lA~~L-g~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T~~ 142 (187)
T PLN02293 64 SVVAGIEARGFIFGPPIALAI-GAKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGTLC 142 (187)
T ss_pred CEEEEeCCCchHHHHHHHHHH-CCCEEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchHHHH
Confidence 444433455667999999999 888765444333223 10112222222379999999887655 4444
Q ss_pred HHHHHHHhcccCCCCeEEEE
Q 027833 83 EQISVIYALPRLFVASFTLV 102 (218)
Q Consensus 83 ELlll~~alr~~ga~~ItlV 102 (218)
+. ++.+++.|++.+.++
T Consensus 143 ~~---~~~l~~~Ga~~v~~~ 159 (187)
T PLN02293 143 AA---INLLERAGAEVVECA 159 (187)
T ss_pred HH---HHHHHHCCCEEEEEE
Confidence 43 466777888665433
No 63
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=82.56 E-value=7.8 Score=32.29 Aligned_cols=77 Identities=9% Similarity=-0.016 Sum_probs=49.0
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCC-CCCeEEEEEecCCc-hhHHHHHHHHHhccc
Q 027833 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDI-RGQHVAFLASFSSP-GVIFEQISVIYALPR 93 (218)
Q Consensus 16 ~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~v-rG~dV~Iiqs~~~p-d~lmELlll~~alr~ 93 (218)
..++=...+.-.+|..+|..| +.++.-..-.+-..| +.... ...+ +|++|+||..+-+. ..+.+. ++++++
T Consensus 60 d~ivg~~~ggi~lA~~lA~~l-~~p~~~~rk~~k~yg--~~~~~-~g~~~~g~~VlIVDDvitTG~Tl~~~---~~~l~~ 132 (176)
T PRK13812 60 TKLAGVALGAVPLVAVTSVET-GVPYVIARKQAKEYG--TGNRI-EGRLDEGEEVVVLEDIATTGQSAVDA---VEALRE 132 (176)
T ss_pred CEEEEeecchHHHHHHHHHHH-CCCEEEEeccCCcCC--CCCeE-EecCCCcCEEEEEEEeeCCCHHHHHH---HHHHHH
Confidence 444444455668999999999 898765555444446 33221 2234 89999999887655 555444 455667
Q ss_pred CCCCeE
Q 027833 94 LFVASF 99 (218)
Q Consensus 94 ~ga~~I 99 (218)
.|++-+
T Consensus 133 ~Ga~vv 138 (176)
T PRK13812 133 AGATVN 138 (176)
T ss_pred CCCeEE
Confidence 787543
No 64
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=81.93 E-value=16 Score=29.20 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHhcccCCCCeEEEEeecCCCccccccCCCCC-cchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccc
Q 027833 79 GVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGD-VATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYF 157 (218)
Q Consensus 79 d~lmELlll~~alr~~ga~~ItlViPYl~YsRQDR~~~~Ge-~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F 157 (218)
+.-.|++-.+..+++..-.++++++- |. +=....+.+.|. ..|+|+++.+|-= ...+|
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~-------------G~~~~~~~~l~~~l~-----~~G~d~v~~~~~~--~~~~~- 73 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVL-------------GPAEEAAEALRKALA-----KYGADKVYHIDDP--ALAEY- 73 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEE-------------ETCCCHHHHHHHHHH-----STTESEEEEEE-G--GGTTC-
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEE-------------ecchhhHHHHhhhhh-----hcCCcEEEEecCc--ccccc-
Confidence 56668888888888755457877752 43 345666777887 7999999999832 22222
Q ss_pred cccccccccccHHHHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCcccc
Q 027833 158 SDHVLPLFETGIPLLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRWCVP 210 (218)
Q Consensus 158 ~~~~~~l~~~~~~~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~~~~ 210 (218)
+ .+.+ ...+++.+++. ..+.++++.+.-+.+-+-.+|..|+|.+-
T Consensus 74 ~--~~~~----a~~l~~~~~~~--~~~lVl~~~t~~g~~la~~lA~~L~~~~v 118 (164)
T PF01012_consen 74 D--PEAY----ADALAELIKEE--GPDLVLFGSTSFGRDLAPRLAARLGAPLV 118 (164)
T ss_dssp ---HHHH----HHHHHHHHHHH--T-SEEEEESSHHHHHHHHHHHHHHT-EEE
T ss_pred C--HHHH----HHHHHHHHHhc--CCCEEEEcCcCCCCcHHHHHHHHhCCCcc
Confidence 1 1122 45677777662 45688888888899999999999998654
No 65
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=81.92 E-value=11 Score=31.08 Aligned_cols=77 Identities=12% Similarity=-0.016 Sum_probs=46.9
Q ss_pred CCcHHHHHHHHHHcCCCc-----eeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcccCCC
Q 027833 23 VECEELARKVAAQSDLIT-----LQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFV 96 (218)
Q Consensus 23 ~~~~~La~~Ia~~l~~~~-----~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~alr~~ga 96 (218)
.+.-.+|..+|..| +.+ ..-..-.....| +......+..+|++|+||..+.+. ..+.+. ++.++++|+
T Consensus 63 ~gG~~~A~~la~~l-~~~~~~~~~~~~rk~~k~~g--~~~~~~g~~~~g~~VlIVDDvi~TG~Tl~~a---~~~l~~~Ga 136 (173)
T TIGR00336 63 LGGIPIATAVSVKL-AKPGGDIPLCFNRKEAKDHG--EGGNIEGELLEGDKVVVVEDVITTGTSILEA---VEIIQAAGG 136 (173)
T ss_pred cChHHHHHHHHHHh-cCcCCCceEEEEcCCcccCC--CCCceecCCCCCCEEEEEeccccChHHHHHH---HHHHHHcCC
Confidence 44668999999999 787 433321222335 433333445689999999888766 555444 456677786
Q ss_pred CeEEEEeecC
Q 027833 97 ASFTLVLPFF 106 (218)
Q Consensus 97 ~~ItlViPYl 106 (218)
.+.-++-.+
T Consensus 137 -~v~~~~vlv 145 (173)
T TIGR00336 137 -QVAGVIIAV 145 (173)
T ss_pred -eEEEEEEEE
Confidence 344444333
No 66
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=80.53 E-value=17 Score=34.64 Aligned_cols=112 Identities=15% Similarity=0.121 Sum_probs=66.6
Q ss_pred CCcHHHHHHHHHHcCCCceeeeeE------eec--CCC-CCeeEE--Ee---cCCCCCCeEEEEEecCCc-hhHHHHHHH
Q 027833 23 VECEELARKVAAQSDLITLQSINW------RNF--ADG-WPNLYI--NS---AHDIRGQHVAFLASFSSP-GVIFEQISV 87 (218)
Q Consensus 23 ~~~~~La~~Ia~~l~~~~~~~~~~------~~F--pDG-~~E~~v--~i---~~~vrG~dV~Iiqs~~~p-d~lmELlll 87 (218)
.+....|..+|+.+ ++++...-. ++| |+. +++..+ ++ ...++|++|+||...... ..+- -+
T Consensus 282 ~sg~~~A~~la~~l-gip~~~~l~r~~~~~r~~i~~~q~~R~~~v~~k~~~~~~~~~gk~v~lvDD~ittG~T~~---~~ 357 (442)
T TIGR01134 282 DSGRSAALGFAQAS-GIPYREGLIKNRYVGRTFIMPTQELRELSVRLKLNPIREVFRGKRVVLVDDSIVRGTTSR---QI 357 (442)
T ss_pred CCHHHHHHHHHHHh-CCCchHHeEEeccccccccCCCHHHHHHHHhhhcccccccCCCCEEEEEeccccccHHHH---HH
Confidence 33456899999999 888753222 223 332 111112 22 346789999999776544 3333 35
Q ss_pred HHhcccCCCCeEEEEee--------cCCC---ccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCC
Q 027833 88 IYALPRLFVASFTLVLP--------FFPT---GSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIH 149 (218)
Q Consensus 88 ~~alr~~ga~~ItlViP--------Yl~Y---sRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlH 149 (218)
+.+|+++||+.|.+.+- |++- +|++.... --+...+++.| |+|.+..+.+.
T Consensus 358 ~~~l~~~ga~~v~~~~~spp~~~pc~yg~d~~~~~el~~~---~~~~~~i~~~~--------~~~~l~~~~~~ 419 (442)
T TIGR01134 358 VKMLRDAGAKEVHVRIASPPIRYPCYYGIDMPTREELIAN---GRTVEEIAKEI--------GADSLAYLSLE 419 (442)
T ss_pred HHHHHHcCCcEEEEEEccCCccCCcccccCCCCHHHHhhc---CCCHHHHHHHh--------CCCEEEEecHH
Confidence 57888999999998877 6666 55554432 13445555555 35666555443
No 67
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=80.13 E-value=14 Score=31.59 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=50.9
Q ss_pred HHHhhhhhcCCCcEEEEecCCcHHHHHHHHHHcCCC-ceeeeeEeecCCC-C--CeeEEEe--cCC-CCCCeEEEEEecC
Q 027833 4 KREIKAKKSQKKQVHLFYCVECEELARKVAAQSDLI-TLQSINWRNFADG-W--PNLYINS--AHD-IRGQHVAFLASFS 76 (218)
Q Consensus 4 ~~~~~~~~~~~~~~~i~~g~~~~~La~~Ia~~l~~~-~~~~~~~~~FpDG-~--~E~~v~i--~~~-vrG~dV~Iiqs~~ 76 (218)
+|+++.. .-+..++|--+.+.--.|.-|+..| ++ ++.-+.+..+.+- + .|..+.- .-+ ++|++|+||..+.
T Consensus 20 A~kI~~s-~~~PDvIiaiaRGG~~pariLsd~L-~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLIVDDI~ 97 (192)
T COG2236 20 AEKIRAS-GFKPDVIVAIARGGLIPARILSDFL-GVKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLIVDDIV 97 (192)
T ss_pred HHHHHHc-CCCCCEEEEEcCCceehHHHHHHHh-CCCceEEEEEEEehhhcccCCcceeecCccccccCCCeEEEEeccc
Confidence 4455443 3456677777888888999999999 77 6777777776652 0 1444443 334 8999999999987
Q ss_pred Cc
Q 027833 77 SP 78 (218)
Q Consensus 77 ~p 78 (218)
+.
T Consensus 98 DT 99 (192)
T COG2236 98 DT 99 (192)
T ss_pred Cc
Confidence 76
No 68
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=76.30 E-value=26 Score=33.38 Aligned_cols=146 Identities=10% Similarity=-0.007 Sum_probs=78.0
Q ss_pred HHHHHHHcCCCceeeee--Eeec--CCCCCeeEEEecCCCCCCeEEEEEe-c-CCchhHHHHHHHHHhcccCCCCeEEEE
Q 027833 29 ARKVAAQSDLITLQSIN--WRNF--ADGWPNLYINSAHDIRGQHVAFLAS-F-SSPGVIFEQISVIYALPRLFVASFTLV 102 (218)
Q Consensus 29 a~~Ia~~l~~~~~~~~~--~~~F--pDG~~E~~v~i~~~vrG~dV~Iiqs-~-~~pd~lmELlll~~alr~~ga~~ItlV 102 (218)
|-.++..+ |++...+. +.+| ++|-.|. +++. ..+..+.||.. . ++|+.+-..|-.+.........|+++|
T Consensus 299 Aia~a~~l-Gi~~~~i~~~l~~~~~~~gR~~~-~r~~--~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V 374 (479)
T PRK14093 299 VLAAAELA-GADLALAALALSQVQPAAGRGVR-HTLE--VGGGEATLIDESYNANPASMAAALGVLGRAPVGPQGRRIAV 374 (479)
T ss_pred HHHHHHHc-CCCHHHHHHHHHhCCCcCCcceE-EEee--cCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEE
Confidence 44566777 77765443 5566 4451132 2222 11234667765 4 456888877777665532123466677
Q ss_pred eecC--CCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHHHHHHhhCC
Q 027833 103 LPFF--PTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQLP 180 (218)
Q Consensus 103 iPYl--~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~~l~~~~ 180 (218)
+.=| -|+|.++- -+-+++.+. ..++|.|+++..+...+..-+...-.+.+..-...+.+++++..
T Consensus 375 ~G~m~elg~~~~~~--------h~~~~~~~~-----~~~~d~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 441 (479)
T PRK14093 375 LGDMLELGPRGPEL--------HRGLAEAIR-----ANAIDLVFCCGPLMRNLWDALSSGKRGGYAEDAAALESQVVAAI 441 (479)
T ss_pred ECChHHcCcHHHHH--------HHHHHHHHH-----HcCCCEEEEEchhHHHHHHhhcccccceeeCCHHHHHHHHHHhc
Confidence 6543 45554332 256788887 67899999998776444322211100011122445667776533
Q ss_pred CCCCEEEEeCC
Q 027833 181 DANNLLHFRMM 191 (218)
Q Consensus 181 ~~~~~vvvsPD 191 (218)
..++.|++-=.
T Consensus 442 ~~gd~vL~kGS 452 (479)
T PRK14093 442 RAGDVIMVKGS 452 (479)
T ss_pred CCCCEEEEEcC
Confidence 45566665433
No 69
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=75.81 E-value=2.2 Score=32.23 Aligned_cols=82 Identities=11% Similarity=0.156 Sum_probs=48.3
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhc
Q 027833 13 QKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYAL 91 (218)
Q Consensus 13 ~~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~al 91 (218)
+.+.+.+++.-++..+|+..+..+ .+++.....-++.+ |..-.....+.-.|++|+-|.... .+++++ +..+
T Consensus 4 ~~~~i~i~G~G~s~~~A~~~~~~l--~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~---~~~a 76 (131)
T PF01380_consen 4 KAKRIYIYGSGSSYGVAQYAALKL--QKLGRIVVISYEAG--EFFHGPLENLDPDDLVIIISYSGETRELIEL---LRFA 76 (131)
T ss_dssp TSSEEEEEESTHHHHHHHHHHHHH--HHHHSSEEEEEEHH--HHHTTGGGGCSTTEEEEEEESSSTTHHHHHH---HHHH
T ss_pred CCCEEEEEEcchHHHHHHHHHHHH--HHhcCcceeccchH--HHhhhhcccccccceeEeeeccccchhhhhh---hHHH
Confidence 345677777767777888877776 34444444444445 422222334445688888886543 444444 4467
Q ss_pred ccCCCCeEEE
Q 027833 92 PRLFVASFTL 101 (218)
Q Consensus 92 r~~ga~~Itl 101 (218)
|+.|++-|.+
T Consensus 77 k~~g~~vi~i 86 (131)
T PF01380_consen 77 KERGAPVILI 86 (131)
T ss_dssp HHTTSEEEEE
T ss_pred HhcCCeEEEE
Confidence 7888766544
No 70
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=75.75 E-value=15 Score=35.68 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=66.7
Q ss_pred EEecCC-cHHHHHHHHHHcCCCceeeeeEe-e-----cC--C-CCCe--eEEE---ecCCCCCCeEEEEEecCCchhHHH
Q 027833 19 LFYCVE-CEELARKVAAQSDLITLQSINWR-N-----FA--D-GWPN--LYIN---SAHDIRGQHVAFLASFSSPGVIFE 83 (218)
Q Consensus 19 i~~g~~-~~~La~~Ia~~l~~~~~~~~~~~-~-----Fp--D-G~~E--~~v~---i~~~vrG~dV~Iiqs~~~pd~lmE 83 (218)
|++-+. ...+|..+++.+ ++++...-++ + |. + .+++ ++.. +...++|++|+||.....--.-+.
T Consensus 297 VvpVP~s~~~~A~~la~~l-gip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~~~v~gK~VlLVDDvitTGaTl~ 375 (501)
T PRK09246 297 VIPIPDTSRDAALEIARIL-GVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFKGKNVLLVDDSIVRGTTSE 375 (501)
T ss_pred EEEeCccHHHHHHHHHHHH-CCCccceEEEEecccccccCcCHHHHHHHHHhhcCCccccccCCeEEEEeccccccHHHH
Confidence 444444 456899999999 8887532222 1 21 1 1011 1111 235689999999977655533332
Q ss_pred HHHHHHhcccCCCCeEEEEee--------cCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCc
Q 027833 84 QISVIYALPRLFVASFTLVLP--------FFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHA 150 (218)
Q Consensus 84 Llll~~alr~~ga~~ItlViP--------Yl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs 150 (218)
- ++.+|+++||++|.+.+- |++-.-.+|.-.-..--|...+++.| |+|++..+.+..
T Consensus 376 ~--~~~~L~~aGA~~V~v~v~ap~i~~pc~ygid~~~~~eLia~~~~~e~i~~~i--------g~dsl~yls~~~ 440 (501)
T PRK09246 376 Q--IVQMAREAGAKKVYFASAAPPVRFPNVYGIDMPTANELIAHGRTVEEIRQII--------GADGLIYQDLED 440 (501)
T ss_pred H--HHHHHHHcCCCEEEEEEEccccccCcccccCCCCHHHHhhcCCCHHHHHHHh--------CCCeEeecCHHH
Confidence 2 668889999999977643 23222232221111122444555554 577777766653
No 71
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=74.80 E-value=27 Score=28.43 Aligned_cols=62 Identities=11% Similarity=0.050 Sum_probs=43.4
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCCcee-eeeEeec---CCCCCeeEEEecCCCCCCeEEEEEecCCc
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDLITLQ-SINWRNF---ADGWPNLYINSAHDIRGQHVAFLASFSSP 78 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~~~~~-~~~~~~F---pDG~~E~~v~i~~~vrG~dV~Iiqs~~~p 78 (218)
+..+++--.++.--+|..++..| +++.. .+....| +.| +..+.-....+|++|+||..+.+.
T Consensus 31 ~~d~vvgv~~GG~~fa~~L~~~L-~~~~v~~i~~ssY~~~~~~--~~~~~~~~~~~gk~VLIVDDIiDT 96 (156)
T PRK09177 31 QWKGIIAVTRGGLVPAAILAREL-GIRLVDTVCISSYDHDNQG--ELKVLKRAEGDGEGFLVVDDLVDT 96 (156)
T ss_pred CCCEEEEEecCCeehHHHHHHHc-CCCceeEEEEEEECCCcCC--cEEEecCCCcCcCEEEEEeeeeCC
Confidence 34566666677778999999999 88753 3444444 335 565555556799999999888766
No 72
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=73.51 E-value=12 Score=28.14 Aligned_cols=78 Identities=9% Similarity=-0.012 Sum_probs=42.7
Q ss_pred EEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCchhHHHHHHHHHhcccCCC
Q 027833 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRLFV 96 (218)
Q Consensus 17 ~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~pd~lmELlll~~alr~~ga 96 (218)
+.+++.-+|...|...+..| ..++.....-++.+ |...... ....+|++|+-|..... -|++.++..+|+.|+
T Consensus 2 I~i~G~G~S~~~a~~~~~~l--~~~~~~~~~~~~~~--~~~~~~~-~~~~~d~~I~iS~sG~t--~e~~~~~~~a~~~g~ 74 (126)
T cd05008 2 ILIVGCGTSYHAALVAKYLL--ERLAGIPVEVEAAS--EFRYRRP-LLDEDTLVIAISQSGET--ADTLAALRLAKEKGA 74 (126)
T ss_pred EEEEEccHHHHHHHHHHHHH--HHhcCCceEEEehh--HhhhcCC-CCCCCcEEEEEeCCcCC--HHHHHHHHHHHHcCC
Confidence 34554445555666666665 22222222233344 4443332 35557888888875442 256667778888887
Q ss_pred CeEEE
Q 027833 97 ASFTL 101 (218)
Q Consensus 97 ~~Itl 101 (218)
+-|.+
T Consensus 75 ~vi~i 79 (126)
T cd05008 75 KTVAI 79 (126)
T ss_pred eEEEE
Confidence 65444
No 73
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=72.81 E-value=16 Score=35.30 Aligned_cols=83 Identities=10% Similarity=0.023 Sum_probs=50.6
Q ss_pred EEEecCC-cHHHHHHHHHHcCCCceeeeeEe------ecC--CC-CCeeEEE-----ecCCCCCCeEEEEEecCCchhHH
Q 027833 18 HLFYCVE-CEELARKVAAQSDLITLQSINWR------NFA--DG-WPNLYIN-----SAHDIRGQHVAFLASFSSPGVIF 82 (218)
Q Consensus 18 ~i~~g~~-~~~La~~Ia~~l~~~~~~~~~~~------~Fp--DG-~~E~~v~-----i~~~vrG~dV~Iiqs~~~pd~lm 82 (218)
+|++-+. +..+|..+|+.+ |+++...-++ .|. +. +|+..++ +.+.++||+|++|.....--..+
T Consensus 286 ~vv~VP~s~~~~A~~~a~~~-gip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~~~i~gk~VlLVDDvittGtTl 364 (471)
T PRK06781 286 VVTGVPDSSISAAIGYAEAT-GIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIVRGTTS 364 (471)
T ss_pred EEEEcChhHHHHHHHHHHHh-CCCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccccccCCceEEEEeceeccchHH
Confidence 3344443 456788999999 8887542221 222 21 1222222 24568899999997754442222
Q ss_pred HHHHHHHhcccCCCCeEEEEe
Q 027833 83 EQISVIYALPRLFVASFTLVL 103 (218)
Q Consensus 83 ELlll~~alr~~ga~~ItlVi 103 (218)
. -++.+||++||++|.+.+
T Consensus 365 ~--~~~~~Lk~aGA~eV~v~i 383 (471)
T PRK06781 365 K--RIVRMLREAGATEVHVRI 383 (471)
T ss_pred H--HHHHHHHHcCCcEEEEEE
Confidence 2 367788899999998876
No 74
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=72.64 E-value=19 Score=27.16 Aligned_cols=78 Identities=14% Similarity=0.012 Sum_probs=46.3
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcccC
Q 027833 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRL 94 (218)
Q Consensus 16 ~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~alr~~ 94 (218)
.+.+++.-++..+|+.++..+ . .++ ....-..|+ |....-...+..+|++|+-|.... .++.+. +..+|+.
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l-~-~~g-~~~~~~~~~--~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~---~~~a~~~ 73 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATL-S-STG-TPAFFLHPT--EALHGDLGMVTPGDVVIAISNSGETDELLNL---LPHLKRR 73 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHh-h-cCC-CceEEcccc--hhhccccCcCCCCCEEEEEeCCCCCHHHHHH---HHHHHHC
Confidence 356666666777888888877 2 222 222233555 543333345555788888888654 555554 4456777
Q ss_pred CCCeEEE
Q 027833 95 FVASFTL 101 (218)
Q Consensus 95 ga~~Itl 101 (218)
|++-|.+
T Consensus 74 g~~vi~i 80 (128)
T cd05014 74 GAPIIAI 80 (128)
T ss_pred CCeEEEE
Confidence 8765554
No 75
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=72.54 E-value=22 Score=34.75 Aligned_cols=121 Identities=19% Similarity=0.133 Sum_probs=68.1
Q ss_pred EEEecCC-cHHHHHHHHHHcCCCceeeeeEee------c--CC-CCCeeEEEe-----cCCCCCCeEEEEEecCCchhHH
Q 027833 18 HLFYCVE-CEELARKVAAQSDLITLQSINWRN------F--AD-GWPNLYINS-----AHDIRGQHVAFLASFSSPGVIF 82 (218)
Q Consensus 18 ~i~~g~~-~~~La~~Ia~~l~~~~~~~~~~~~------F--pD-G~~E~~v~i-----~~~vrG~dV~Iiqs~~~pd~lm 82 (218)
+|++-+. ....|..+|+.+ ++++...-.+. | |. ..++..+++ .+.+.||+|++|.....--..+
T Consensus 305 ~VvpVP~sG~~~A~g~a~~~-gip~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~~~gk~vllVDD~ittG~T~ 383 (510)
T PRK07847 305 LVIPVPESGTPAAVGYAQES-GIPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIRGKRLVVVDDSIVRGNTQ 383 (510)
T ss_pred EEEeccCchHHHHHHHHHHh-CCChhhceEeecccccCccCcchhhhhhceeeecCccccccCCCEEEEEecccCchHHH
Confidence 3444333 456799999999 88875442221 1 11 112333443 3457999999997754443333
Q ss_pred HHHHHHHhcccCCCCeEEEEee--------cCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCC
Q 027833 83 EQISVIYALPRLFVASFTLVLP--------FFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIH 149 (218)
Q Consensus 83 ELlll~~alr~~ga~~ItlViP--------Yl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlH 149 (218)
. -++.+|+++||++|.+-+- |++-.-.+|.-.-..-.|..-+++.| |+|++..+.+-
T Consensus 384 ~--~~~~~L~~~ga~~v~~ri~sPpi~~pc~yGid~~~~~eLia~~~~~eei~~~i--------gadsl~yls~e 448 (510)
T PRK07847 384 R--ALVRMLREAGAAEVHVRISSPPVKWPCFYGIDFASRAELIANGLTVEEIRRSI--------GADSLGYISLD 448 (510)
T ss_pred H--HHHHHHHHcCCCEEEEEECCCCcCCCCcCcCCCCCHHHHHhcCCCHHHHHHHh--------CCCeEeccCHH
Confidence 2 4677888999999988763 22222222221111123455555555 46777776654
No 76
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=70.48 E-value=22 Score=34.36 Aligned_cols=83 Identities=10% Similarity=0.010 Sum_probs=51.7
Q ss_pred EEEecCC-cHHHHHHHHHHcCCCceeeeeEe------ecCCC---CCeeEEE--e---cCCCCCCeEEEEEecCCchhHH
Q 027833 18 HLFYCVE-CEELARKVAAQSDLITLQSINWR------NFADG---WPNLYIN--S---AHDIRGQHVAFLASFSSPGVIF 82 (218)
Q Consensus 18 ~i~~g~~-~~~La~~Ia~~l~~~~~~~~~~~------~FpDG---~~E~~v~--i---~~~vrG~dV~Iiqs~~~pd~lm 82 (218)
.|++-+. +..+|..+|+.+ |+++...-++ .|..- +|+..++ + .+.++||+|++|.....--.-+
T Consensus 286 ~VvpVP~s~~~~A~gla~~~-gip~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~~~~v~gk~VlLVDDsittGtTl 364 (475)
T PRK07631 286 VVTGVPDSSISAAIGYAEAT-GIPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPVRGVVEGKRVVMVDDSIVRGTTS 364 (475)
T ss_pred EEEEechhHHHHHHHHHHHH-CCCcccceEEEecCCCCCcCCCHHHHHHHHhhhhhhcccccCCceEEEEeeeeccHHHH
Confidence 4444444 446899999999 8887542222 13322 1222221 1 4568899999997765443333
Q ss_pred HHHHHHHhcccCCCCeEEEEe
Q 027833 83 EQISVIYALPRLFVASFTLVL 103 (218)
Q Consensus 83 ELlll~~alr~~ga~~ItlVi 103 (218)
. -++.+|+++||++|.+.+
T Consensus 365 ~--~~~~~L~~aGA~eV~v~~ 383 (475)
T PRK07631 365 R--RIVTMLREAGATEVHVRI 383 (475)
T ss_pred H--HHHHHHHHcCCCEEEEEE
Confidence 3 456788899999998876
No 77
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=70.45 E-value=7.5 Score=32.26 Aligned_cols=57 Identities=7% Similarity=-0.112 Sum_probs=40.4
Q ss_pred chhhhccccccccccccccHHHHHHHHhh----CCCCCCEEEEeCCcccHHHHHHHHHHcCcc
Q 027833 150 ALQERFYFSDHVLPLFETGIPLLKQRLHQ----LPDANNLLHFRMMEPGSDSTRCWIISLRWC 208 (218)
Q Consensus 150 s~~~~~~F~~~~~~l~~~~~~~l~~~l~~----~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~~ 208 (218)
.-++++.|.++..++ ...|.+.+.+.+ ....+..+|++|+.|++..|..+|..||.=
T Consensus 17 ~~~~~~~~~i~~~k~--~~dp~l~~~~~~~La~~l~~~~d~Iv~v~~gGiplA~~lA~~L~~p 77 (178)
T PRK07322 17 LIRVGPDLAIALFVI--LGDTELTEAAAEALAKRLPTEVDVLVTPETKGIPLAHALSRRLGKP 77 (178)
T ss_pred eeEeCCCCEEEEEhh--hCCHHHHHHHHHHHHHHcCCCCCEEEEeccCCHHHHHHHHHHHCCC
Confidence 345667777888888 555655554422 122155699999999999999999999853
No 78
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=68.92 E-value=63 Score=26.68 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=53.2
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCCceeeeeEee--cCCC------------CCeeEEEe---cCCCCCCeEEEEEecCCc
Q 027833 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRN--FADG------------WPNLYINS---AHDIRGQHVAFLASFSSP 78 (218)
Q Consensus 16 ~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~--FpDG------------~~E~~v~i---~~~vrG~dV~Iiqs~~~p 78 (218)
..++=...+.-.+|..+|+.| +.++.-..-.. +.++ +++....- ...++|++|+||..+...
T Consensus 54 d~Iv~v~~gGiplA~~lA~~L-~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitT 132 (178)
T PRK07322 54 DVLVTPETKGIPLAHALSRRL-GKPYVVARKSRKPYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVST 132 (178)
T ss_pred CEEEEeccCCHHHHHHHHHHH-CCCEEEEEEeCCCCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEeccccc
Confidence 344434455778999999999 88875443222 1222 00111110 124689999999887666
Q ss_pred -hhHHHHHHHHHhcccCCCCeEEEEeecCCCccccc
Q 027833 79 -GVIFEQISVIYALPRLFVASFTLVLPFFPTGSFER 113 (218)
Q Consensus 79 -d~lmELlll~~alr~~ga~~ItlViPYl~YsRQDR 113 (218)
..+. -+++.+++.||+.+. ++=.+.|+.++-
T Consensus 133 G~Tl~---aa~~~L~~~GA~~V~-~~~v~~~~~~~~ 164 (178)
T PRK07322 133 GGTLT---ALERLVERAGGQVVA-KAAIFAEGDASN 164 (178)
T ss_pred cHHHH---HHHHHHHHcCCEEEE-EEEEEEcCCCCC
Confidence 4443 344556888987643 344455555543
No 79
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=67.18 E-value=28 Score=33.90 Aligned_cols=76 Identities=11% Similarity=0.010 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHHcCCCceeeeeEee-cC-------C-CCCeeEE--E---ecCCCCCCeEEEEEecCCc-hhHHHHHHHH
Q 027833 24 ECEELARKVAAQSDLITLQSINWRN-FA-------D-GWPNLYI--N---SAHDIRGQHVAFLASFSSP-GVIFEQISVI 88 (218)
Q Consensus 24 ~~~~La~~Ia~~l~~~~~~~~~~~~-Fp-------D-G~~E~~v--~---i~~~vrG~dV~Iiqs~~~p-d~lmELlll~ 88 (218)
+...+|..+|+.+ |+++...-.++ |- . ..++..+ + +.+.++|++|++|...... ..+- -++
T Consensus 322 sg~~~A~g~A~~l-gip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~~gkrVlLVDDvIttGtTl~---~~~ 397 (500)
T PRK07349 322 SGIPAAIGFSQAS-GIPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLAGKRIIIVDDSIVRGTTSR---KIV 397 (500)
T ss_pred ccHHHHHHHHHHH-CCCchhceEEEeccCccccCCCHHHHHhhhheeeeccccccCCCEEEEEeceeCCcHHHH---HHH
Confidence 3456899999999 89986433332 22 1 1112111 2 2456789999999776444 3333 356
Q ss_pred HhcccCCCCeEEEEe
Q 027833 89 YALPRLFVASFTLVL 103 (218)
Q Consensus 89 ~alr~~ga~~ItlVi 103 (218)
.+||++||+.|.+-+
T Consensus 398 ~~Lr~aGAkeV~~~i 412 (500)
T PRK07349 398 KALRDAGATEVHMRI 412 (500)
T ss_pred HHHHHhCCeEEEEEe
Confidence 788899999998874
No 80
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=65.07 E-value=79 Score=26.45 Aligned_cols=73 Identities=19% Similarity=0.096 Sum_probs=44.7
Q ss_pred CCcHHHHHHHHHHcCCCceeeeeEeecCCCC------------CeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHH
Q 027833 23 VECEELARKVAAQSDLITLQSINWRNFADGW------------PNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIY 89 (218)
Q Consensus 23 ~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~------------~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~ 89 (218)
.+.-.+|..+|..+ +.++....-.+++... -|..+......+|++|+||..+-+. ..+ .-+++
T Consensus 60 ~~Gi~lA~~vA~~l-~~p~~~~rk~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~---~~ai~ 135 (187)
T PRK12560 60 DKGAPLATPVSLLS-GKPLAMARWYPYSLSELNYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTV---IALIK 135 (187)
T ss_pred cccHHHHHHHHHhh-CCCEEEeccCCCcccceeEEeeeeeccceeeeeEccCCCCcCEEEEEEeccccCHHH---HHHHH
Confidence 44668999999999 8887554432222210 0111222234689999999887655 444 34456
Q ss_pred hcccCCCCeE
Q 027833 90 ALPRLFVASF 99 (218)
Q Consensus 90 alr~~ga~~I 99 (218)
.++++||..+
T Consensus 136 ll~~aGa~vv 145 (187)
T PRK12560 136 AIENSGGIVS 145 (187)
T ss_pred HHHHCCCEEE
Confidence 7778888654
No 81
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=65.04 E-value=13 Score=27.81 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=46.3
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCchhHHHHHHHHHhccc
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPR 93 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~pd~lmELlll~~alr~ 93 (218)
.+.+.+++...+..+|...+..| ..++. .....++. +........+...+.+|+-|..... .+++.++..+++
T Consensus 13 ~~~i~i~g~g~s~~~a~~~~~~l--~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~i~iS~~g~~--~~~~~~~~~a~~ 85 (139)
T cd05013 13 ARRIYIFGVGSSGLVAEYLAYKL--LRLGK-PVVLLSDP--HLQLMSAANLTPGDVVIAISFSGET--KETVEAAEIAKE 85 (139)
T ss_pred CCEEEEEEcCchHHHHHHHHHHH--HHcCC-ceEEecCH--HHHHHHHHcCCCCCEEEEEeCCCCC--HHHHHHHHHHHH
Confidence 35677777777778888888887 23332 33344555 4333222233446788877875442 234555567788
Q ss_pred CCCCeE
Q 027833 94 LFVASF 99 (218)
Q Consensus 94 ~ga~~I 99 (218)
.|++-|
T Consensus 86 ~g~~iv 91 (139)
T cd05013 86 RGAKVI 91 (139)
T ss_pred cCCeEE
Confidence 887543
No 82
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.84 E-value=43 Score=31.32 Aligned_cols=142 Identities=9% Similarity=0.037 Sum_probs=71.1
Q ss_pred HHHHHHHHcCCCceeeee--EeecCCCCCeeEEEecCCCCCCeEEEEEec-C-CchhHHHHHHHHHhcccCCCCeEEEEe
Q 027833 28 LARKVAAQSDLITLQSIN--WRNFADGWPNLYINSAHDIRGQHVAFLASF-S-SPGVIFEQISVIYALPRLFVASFTLVL 103 (218)
Q Consensus 28 La~~Ia~~l~~~~~~~~~--~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~-~-~pd~lmELlll~~alr~~ga~~ItlVi 103 (218)
.|-.++..+ |++...+. +..|..- +-+.++-.... .+.++... . .|+.....+ ++++....+++++|+
T Consensus 280 aAia~a~~l-gi~~~~i~~~L~~f~g~--~~R~e~v~~~~--gv~~idDs~atN~~a~~~al---~~l~~~~~~~iilI~ 351 (448)
T PRK03803 280 AALALGEAA-GLPKEAMLEVLRTFTGL--PHRCEWVREVA--GVDYYNDSKGTNVGATVAAI---EGLGAHIQGKLVLIA 351 (448)
T ss_pred HHHHHHHHc-CCCHHHHHHHHhhCCCC--CCceEEEEEeC--CeEEEEcCCcCCHHHHHHHH---HhhhhcCCCCEEEEE
Confidence 355566777 66654333 5667543 33333322222 34444433 2 225554444 344332224788887
Q ss_pred ecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccc--ccccccccccHHHHHHHHhhCCC
Q 027833 104 PFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFS--DHVLPLFETGIPLLKQRLHQLPD 181 (218)
Q Consensus 104 PYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~--~~~~~l~~~~~~~l~~~l~~~~~ 181 (218)
.-+. .|.-+ . -+.+.+. .. ++.++++-.+...+...+. .++... .......+++.+..+
T Consensus 352 Gg~~---k~~d~------~--~l~~~l~-----~~-~~~vil~G~~~~~i~~~l~~~~~~~~~--~~~~~a~~~a~~~a~ 412 (448)
T PRK03803 352 GGDG---KGADF------S--PLREPVA-----KY-VRAVVLIGRDADKIAAALGGAVPLVRV--ATLAEAVAKAAELAQ 412 (448)
T ss_pred CCCC---CCCCH------H--HHHHHHH-----hh-CCEEEEECCCHHHHHHHHhcCCCEEEe--CCHHHHHHHHHHhCC
Confidence 4321 12222 1 2455554 22 5789998877766654442 122111 222334444433334
Q ss_pred CCCEEEEeCCcccHH
Q 027833 182 ANNLLHFRMMEPGSD 196 (218)
Q Consensus 182 ~~~~vvvsPD~Ga~~ 196 (218)
.++.|++||-.+..+
T Consensus 413 ~gdvVL~SPa~aSfd 427 (448)
T PRK03803 413 AGDIVLLSPACASLD 427 (448)
T ss_pred CCCEEEeCchhhccc
Confidence 578999999988754
No 83
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=64.24 E-value=31 Score=33.36 Aligned_cols=116 Identities=15% Similarity=0.126 Sum_probs=67.7
Q ss_pred CCcHHHHHHHHHHcCCCceeeeeE------eec--CCC-CCeeEEEe-----cCCCCCCeEEEEEe-cCCchhHHHHHHH
Q 027833 23 VECEELARKVAAQSDLITLQSINW------RNF--ADG-WPNLYINS-----AHDIRGQHVAFLAS-FSSPGVIFEQISV 87 (218)
Q Consensus 23 ~~~~~La~~Ia~~l~~~~~~~~~~------~~F--pDG-~~E~~v~i-----~~~vrG~dV~Iiqs-~~~pd~lmELlll 87 (218)
.|+...|-..|+.+ |+|+..--+ +.| |.. ++|.-|++ .+.++||.|++|.. +.+-.. .=.+
T Consensus 292 DSg~~aAig~A~~s-GiPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v~GKrVvlVDDSIVRGTT---sr~I 367 (470)
T COG0034 292 DSGRPAAIGYARAS-GIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVVKGKRVVLVDDSIVRGTT---SRRI 367 (470)
T ss_pred CCChHHHHHHHHHh-CCchhhccccccccceeeeCCcHHHHHhhhhhhcCchHHHhCCCeEEEEccccccCcc---HHHH
Confidence 44667788899999 788632222 222 443 34555554 36789999999853 333211 2234
Q ss_pred HHhcccCCCCeEEEEe--e------cCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCc
Q 027833 88 IYALPRLFVASFTLVL--P------FFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHA 150 (218)
Q Consensus 88 ~~alr~~ga~~ItlVi--P------Yl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs 150 (218)
+..+|++||+.|++-+ | |++---++|.-.-..--+...+++.| |+|++..+++-.
T Consensus 368 V~mlReAGAkEVHvriasP~i~~Pc~YGID~pt~~eLIA~~~~~eeI~~~I--------gaDSL~yLsleg 430 (470)
T COG0034 368 VQMLREAGAKEVHVRIASPPIRYPCFYGIDMPTREELIAANRTVEEIRKAI--------GADSLAYLSLEG 430 (470)
T ss_pred HHHHHHhCCCEEEEEecCCCccCCCccccCCCCHHHHhhCCCCHHHHHHHh--------CCCceeeecHHH
Confidence 5556799999998764 3 34444444432211222355556555 578888888763
No 84
>PRK11595 DNA utilization protein GntX; Provisional
Probab=64.21 E-value=14 Score=31.68 Aligned_cols=73 Identities=18% Similarity=0.112 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCCceeeeeEeecCC-------C--CCee----EEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhc
Q 027833 26 EELARKVAAQSDLITLQSINWRNFAD-------G--WPNL----YINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYAL 91 (218)
Q Consensus 26 ~~La~~Ia~~l~~~~~~~~~~~~FpD-------G--~~E~----~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~al 91 (218)
..+|+.+++.+ ++++..--+.+-.+ + ++.. ...+..++.|++|+||.++.+. ..+.+ .+++|
T Consensus 135 ~~la~~la~~~-~~~~~~~~l~r~~~~~~q~~l~~~~R~~n~~~~f~~~~~~~~~~vllvDDv~tTG~Tl~~---~~~~L 210 (227)
T PRK11595 135 DLLCRPLARWL-GCDYDSEALTRTRATATQHFLSARLRKRNLKNAFRLELPVQGQHMAIVDDVVTTGSTVAE---IAQLL 210 (227)
T ss_pred HHHHHHHHHHH-CCCCcccceEEecCCCCcccCCHHHHhhhhhhhhccCCCCCCCEEEEEeeeecchHHHHH---HHHHH
Confidence 36789999999 77653211111011 0 0001 1122356889999999887665 33333 45677
Q ss_pred ccCCCCeEEEE
Q 027833 92 PRLFVASFTLV 102 (218)
Q Consensus 92 r~~ga~~ItlV 102 (218)
++.|+++|.++
T Consensus 211 ~~~g~~~V~~~ 221 (227)
T PRK11595 211 LRNGAASVQVW 221 (227)
T ss_pred HHcCCcEEEEE
Confidence 88999998664
No 85
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=63.29 E-value=39 Score=33.54 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=55.2
Q ss_pred CCCeEEEEEecCCchhHHHHHHHHHhcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEE
Q 027833 65 RGQHVAFLASFSSPGVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLV 144 (218)
Q Consensus 65 rG~dV~Iiqs~~~pd~lmELlll~~alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vi 144 (218)
+++.++|+... +-|-+--..++..+|++.|+..+..+||- ++.+|=-++...+-++.. .|++-||
T Consensus 68 ~~e~I~I~gDy-D~DGitstail~~~L~~~g~~~~~~~IP~--------R~~eGYGl~~~~i~~~~~------~~~~LiI 132 (575)
T PRK11070 68 EGTRIIVVGDF-DADGATSTALSVLALRSLGCSNVDYLVPN--------RFEDGYGLSPEVVDQAHA------RGAQLIV 132 (575)
T ss_pred CCCEEEEEEec-CccHHHHHHHHHHHHHHcCCCceEEEeCC--------CCcCCCCCCHHHHHHHHh------cCCCEEE
Confidence 34667777554 33677777888999999999777777772 346677788888888776 5889999
Q ss_pred EEeCCchhh
Q 027833 145 IYDIHALQE 153 (218)
Q Consensus 145 tvDlHs~~~ 153 (218)
|+|.-+...
T Consensus 133 tvD~Gi~~~ 141 (575)
T PRK11070 133 TVDNGISSH 141 (575)
T ss_pred EEcCCcCCH
Confidence 999987654
No 86
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=62.93 E-value=27 Score=26.98 Aligned_cols=83 Identities=8% Similarity=-0.073 Sum_probs=48.2
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCchhHHHHHHHHHhccc
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPR 93 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~pd~lmELlll~~alr~ 93 (218)
.+.+.+++.-++...|...+..+ .+.+.+...-+.++ |...--...+..++++|+-|.... .--++.-++..+++
T Consensus 13 ~~~i~~~G~G~s~~~a~e~~~kl--~e~~~i~~~~~~~~--e~~hg~~~~~~~~~~vi~is~~g~-t~~~~~~~~~~~~~ 87 (153)
T cd05009 13 AKSFYVLGRGPNYGTALEGALKL--KETSYIHAEAYSAG--EFKHGPIALVDEGTPVIFLAPEDR-LEEKLESLIKEVKA 87 (153)
T ss_pred cCcEEEEcCCCCHHHHHHHHHHH--HHHHhhcceeccHH--HhccChhhhccCCCcEEEEecCCh-hHHHHHHHHHHHHH
Confidence 45555555555666677776666 44555566667777 665555555655677776664332 12224456677777
Q ss_pred CCCCeEEE
Q 027833 94 LFVASFTL 101 (218)
Q Consensus 94 ~ga~~Itl 101 (218)
.|++-+.+
T Consensus 88 ~~~~vi~i 95 (153)
T cd05009 88 RGAKVIVI 95 (153)
T ss_pred cCCEEEEE
Confidence 77644433
No 87
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=62.49 E-value=63 Score=28.21 Aligned_cols=79 Identities=11% Similarity=-0.013 Sum_probs=46.9
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecC-------------CCCCeeEEEec--CCCCCCeEEEEEecCCc-h
Q 027833 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFA-------------DGWPNLYINSA--HDIRGQHVAFLASFSSP-G 79 (218)
Q Consensus 16 ~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~Fp-------------DG~~E~~v~i~--~~vrG~dV~Iiqs~~~p-d 79 (218)
..++-.....-.+|..+|..| |.++....-.+.+ .| .+....++ .-.+|++|+||..+-+. .
T Consensus 113 D~Vvtv~~~GI~lA~~lA~~L-~~p~vi~Rk~~~~~~~~~v~~y~s~s~~-~~~~~~l~~~~l~~G~rVLIVDDvi~TG~ 190 (238)
T PRK08558 113 DVVLTAATDGIPLAVAIASYF-GADLVYAKKSKETGVEKFYEEYQRLASG-IEVTLYLPASALKKGDRVLIVDDIIRSGE 190 (238)
T ss_pred CEEEEECcccHHHHHHHHHHH-CcCEEEEEecCCCCCcceEEEeeccCCC-ceeEEEecHHHcCCcCEEEEEecccccCH
Confidence 455555567778999999999 8987654332211 11 01122222 23589999999776544 3
Q ss_pred hHHHHHHHHHhcccCCCCeE
Q 027833 80 VIFEQISVIYALPRLFVASF 99 (218)
Q Consensus 80 ~lmELlll~~alr~~ga~~I 99 (218)
.+. -+++.+++.||+-+
T Consensus 191 Tl~---~~~~ll~~~ga~vv 207 (238)
T PRK08558 191 TQR---ALLDLARQAGADVV 207 (238)
T ss_pred HHH---HHHHHHHHcCCEEE
Confidence 333 34555667777543
No 88
>PF05124 S_layer_C: S-layer like family, C-terminal region ; InterPro: IPR022651 This entry represents the C-terminal domain of S-layer proteins. Some local similarity can be found to other S-layer protein families.
Probab=62.37 E-value=27 Score=30.50 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=38.6
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEe-cCCCCCCeEEEEEecCCc
Q 027833 13 QKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINS-AHDIRGQHVAFLASFSSP 78 (218)
Q Consensus 13 ~~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i-~~~vrG~dV~Iiqs~~~p 78 (218)
-.+++++++|+-+..+.+++...+ .+++ +|+..--++. .....|.+|++++...+-
T Consensus 153 ~~~nlILVGGPvaN~~t~~l~~~~-~i~i---------~~~~~gvi~~~~~~~n~~~VivvAG~Dr~ 209 (222)
T PF05124_consen 153 IDKNLILVGGPVANKLTKELNDEF-PIKI---------PGENPGVIQVIKNPFNGYDVIVVAGSDRY 209 (222)
T ss_pred CCCCEEEECCchHHHHHHHHHhcC-cccc---------cCCCceEEEEEecCCCCCEEEEEeCCCHH
Confidence 357899999999999999999988 5665 3312223332 233448899999876543
No 89
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=61.92 E-value=17 Score=27.79 Aligned_cols=77 Identities=9% Similarity=-0.040 Sum_probs=40.9
Q ss_pred EEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcccCCC
Q 027833 18 HLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFV 96 (218)
Q Consensus 18 ~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~alr~~ga 96 (218)
.+++.-+|...|......+ .++......-+.+. |........+...|++|+-|.+.. .+++ -.++.+|+.|+
T Consensus 3 ~i~G~G~S~~~A~~~~~~l--~~~~~~~~~~~~~~--~~~~~~~~~~~~~dl~I~iS~SG~t~~~~---~~~~~a~~~g~ 75 (120)
T cd05710 3 FFVGCGGSLADMYPAKYFL--KKESKLPVFVYNAA--EFLHTGPKRLTEKSVVILASHSGNTKETV---AAAKFAKEKGA 75 (120)
T ss_pred EEEEecHHHHHHhHHHHHH--HHhcCCceEEEcHH--HHhhcCcccCCCCcEEEEEeCCCCChHHH---HHHHHHHHcCC
Confidence 3444334444444444444 22334444556666 544333334555788888887644 4444 45566677787
Q ss_pred CeEEE
Q 027833 97 ASFTL 101 (218)
Q Consensus 97 ~~Itl 101 (218)
+-|.+
T Consensus 76 ~vi~i 80 (120)
T cd05710 76 TVIGL 80 (120)
T ss_pred eEEEE
Confidence 54443
No 90
>PRK15482 transcriptional regulator MurR; Provisional
Probab=61.87 E-value=12 Score=32.94 Aligned_cols=81 Identities=10% Similarity=0.052 Sum_probs=49.8
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhc
Q 027833 13 QKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYAL 91 (218)
Q Consensus 13 ~~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~al 91 (218)
+.+.+.|++..+|..+|+.+...| ..++. .+.-..|+ +........+...||+|+-|.... .+++ -++..+
T Consensus 134 ~A~~I~i~G~G~S~~~A~~l~~~l--~~~g~-~~~~~~d~--~~~~~~~~~~~~~Dv~i~iS~sg~t~~~~---~~~~~a 205 (285)
T PRK15482 134 KAPFIQITGLGGSALVGRDLSFKL--MKIGY-RVACEADT--HVQATVSQALKKGDVQIAISYSGSKKEIV---LCAEAA 205 (285)
T ss_pred hCCeeEEEEeChhHHHHHHHHHHH--HhCCC-eeEEeccH--hHHHHHHhcCCCCCEEEEEeCCCCCHHHH---HHHHHH
Confidence 345688888888888888888877 22221 22333555 432222345556799999898654 4444 455567
Q ss_pred ccCCCCeEEE
Q 027833 92 PRLFVASFTL 101 (218)
Q Consensus 92 r~~ga~~Itl 101 (218)
++.|++-|.+
T Consensus 206 ~~~g~~iI~I 215 (285)
T PRK15482 206 RKQGATVIAI 215 (285)
T ss_pred HHCCCEEEEE
Confidence 7888765544
No 91
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=60.17 E-value=22 Score=29.53 Aligned_cols=38 Identities=5% Similarity=-0.071 Sum_probs=29.1
Q ss_pred HHHHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCc
Q 027833 169 IPLLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRW 207 (218)
Q Consensus 169 ~~~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~ 207 (218)
.+.+++++.+... ++.+|++|+.|+...|..+|..||.
T Consensus 45 ~~~i~~~l~~~i~-~~d~ivg~~~ggi~lA~~lA~~l~~ 82 (176)
T PRK13812 45 LRLIAEAFADRID-EDTKLAGVALGAVPLVAVTSVETGV 82 (176)
T ss_pred HHHHHHHHHHHhc-cCCEEEEeecchHHHHHHHHHHHCC
Confidence 3456666655321 3379999999999999999999984
No 92
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=59.49 E-value=75 Score=27.18 Aligned_cols=70 Identities=16% Similarity=-0.031 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecC-CCCCCeEEEEEecCCc-hhHHHHHHHHHhcccCCCCeE
Q 027833 25 CEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAH-DIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFVASF 99 (218)
Q Consensus 25 ~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~-~vrG~dV~Iiqs~~~p-d~lmELlll~~alr~~ga~~I 99 (218)
.-.+|..+|..+ +.++....-..--.|+ +-.+++.. ..+|++|+||..+-+. ..+.+. +.++++.|++-+
T Consensus 78 Gi~~A~~vA~~l-~~p~~~~RK~~K~~G~-~~~~~~~g~~~~g~~VlIVDDViTTG~Ti~~a---~~~L~~~G~~vv 149 (206)
T PRK13809 78 ALTLATSISLKY-NIPMVLRRKELKNVDP-SDAIKVEGLFTPGQTCLVINDMVSSGKSIIET---AVALEEEGLVVR 149 (206)
T ss_pred cHHHHHHHHHHh-CCCEEEEeCCCCCCCC-cCEEEEccccCCCCEEEEEEeccccCHHHHHH---HHHHHHCCCEEE
Confidence 557899999999 8887755431222241 22333332 3588999999887655 555554 445556776533
No 93
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=59.22 E-value=18 Score=30.24 Aligned_cols=39 Identities=5% Similarity=0.008 Sum_probs=29.7
Q ss_pred HHHHHHHHhhCCC--CCCEEEEeCCcccHHHHHHHHHHcCc
Q 027833 169 IPLLKQRLHQLPD--ANNLLHFRMMEPGSDSTRCWIISLRW 207 (218)
Q Consensus 169 ~~~l~~~l~~~~~--~~~~vvvsPD~Ga~~ra~~~a~~l~~ 207 (218)
..-++..+.+... ..++++|+++.||...|..+++.|+.
T Consensus 18 i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~~ 58 (178)
T PRK15423 18 IAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQV 58 (178)
T ss_pred HHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhCC
Confidence 3445666644222 34699999999999999999999986
No 94
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=59.14 E-value=44 Score=32.57 Aligned_cols=71 Identities=11% Similarity=0.147 Sum_probs=47.1
Q ss_pred CeEEEEEecCCchhHHHHHHHHHhcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEE
Q 027833 67 QHVAFLASFSSPGVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIY 146 (218)
Q Consensus 67 ~dV~Iiqs~~~pd~lmELlll~~alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitv 146 (218)
++++|+... ++|.+--.+.|..+|++.|. .++.++|. |... |=.++...+-++.. .|++-+||+
T Consensus 55 ~~I~I~gh~-D~DGi~S~~~L~~~L~~~g~-~v~~~ip~----r~~~----~yg~~~~~i~~~~~------~~~~LiI~v 118 (539)
T TIGR00644 55 EKILIFGDY-DVDGITSTAILVEFLKDLGV-NVDYYIPN----RITE----GYGLSPEALREAIE------NGVSLIITV 118 (539)
T ss_pred CeEEEEEcc-CCCcHHHHHHHHHHHHHCCC-ceEEEeCC----CCcc----cCCCCHHHHHHHHh------cCCCEEEEe
Confidence 566666555 67899999999999999995 66777764 2221 11233344444433 467889999
Q ss_pred eCCchhh
Q 027833 147 DIHALQE 153 (218)
Q Consensus 147 DlHs~~~ 153 (218)
|.-+...
T Consensus 119 D~G~~~~ 125 (539)
T TIGR00644 119 DNGISAH 125 (539)
T ss_pred CCCcccH
Confidence 9887543
No 95
>TIGR01564 S_layer_MJ S-layer protein, MJ0822 family. This model represents one of several families of proteins associated with the formation of prokaryotic S-layers. Members of this family are found in archaeal species, including Pyrococcus horikoshii (split into two tandem reading frames), Methanococcus jannaschii, and related species. Some local similarity can be found to other S-layer protein families.
Probab=57.77 E-value=24 Score=34.98 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=44.3
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc
Q 027833 13 QKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP 78 (218)
Q Consensus 13 ~~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p 78 (218)
..++++++.|+-...|.++|...+ .+++. .-+.| + +..+.....|.+|+|+..-.+.
T Consensus 502 ~~~nlILVGGPv~N~ltk~l~~~~-~i~i~-----n~~p~--~-~~~~~~~~ng~~vlvvAG~dr~ 558 (571)
T TIGR01564 502 ADKNLILVGGPVANKLTKELADAG-KVPKT-----ESSPA--T-YAEKCGAANGYDVLVVAGGDRE 558 (571)
T ss_pred CCCCEEEECCcchhHHHHHHHhcC-ceecc-----CCCcc--e-eeeeccccCCceEEEEeCCChH
Confidence 457899999999999999998887 66664 34555 4 5666777889999999876554
No 96
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=56.52 E-value=32 Score=29.53 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=46.4
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCchhHHHHHHHHHhcccCC
Q 027833 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRLF 95 (218)
Q Consensus 16 ~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~pd~lmELlll~~alr~~g 95 (218)
.+.+++.-+|..+|+.++.+| ..++.. ..-+.|. |........+...|++|+-|.... --+++.++..+|+.|
T Consensus 2 rI~i~G~G~S~~~a~~~~~~l--~~~g~~-~~~~~~~--~~~~~~~~~~~~~d~~i~iS~sG~--t~~~~~~~~~a~~~g 74 (268)
T TIGR00393 2 KLVIVGIGKSGLIGKKIVATF--ASTGTP-SFFLHPT--EAMHGDLGMVEPNDVVLMISYSGE--SLELLNLIPHLKRLS 74 (268)
T ss_pred cEEEEecChHHHHHHHHHHHH--HhcCCc-eEEeCHh--HHhhcccCCCCCCCEEEEEeCCCC--CHHHHHHHHHHHHcC
Confidence 355666566667788888776 223322 2234555 544433445666789998888654 234445556677778
Q ss_pred CCeEEE
Q 027833 96 VASFTL 101 (218)
Q Consensus 96 a~~Itl 101 (218)
++-|.+
T Consensus 75 ~~ii~i 80 (268)
T TIGR00393 75 HKIIAF 80 (268)
T ss_pred CcEEEE
Confidence 765544
No 97
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=56.13 E-value=79 Score=29.32 Aligned_cols=132 Identities=12% Similarity=0.046 Sum_probs=69.0
Q ss_pred HHHHHHHHcCCCceeeee--EeecC--CCCCeeEEEecCCCCCCeE-EEEEec-CCchhHHHHHHHHHhcccCCCCeEEE
Q 027833 28 LARKVAAQSDLITLQSIN--WRNFA--DGWPNLYINSAHDIRGQHV-AFLASF-SSPGVIFEQISVIYALPRLFVASFTL 101 (218)
Q Consensus 28 La~~Ia~~l~~~~~~~~~--~~~Fp--DG~~E~~v~i~~~vrG~dV-~Iiqs~-~~pd~lmELlll~~alr~~ga~~Itl 101 (218)
.|-.++..+ |++...+. +..|. .|-.| +.. ++.+ +|..|. ++|+.+-..|-.+.... .++++
T Consensus 261 aAia~~~~l-Gi~~~~i~~~l~~~~~~~gR~e----~~~---~~~~~vidDsya~np~s~~~al~~l~~~~----~r~i~ 328 (417)
T TIGR01143 261 AAAALALEL-GIPLEEIAEGLAELKLVKGRFE----IQT---KNGLTLIDDTYNANPDSMRAALDALARFP----GKKIL 328 (417)
T ss_pred HHHHHHHHc-CCCHHHHHHHHHhCCCCCCcee----EEc---CCCcEEEEcCCCCCHHHHHHHHHHHHhCC----CCEEE
Confidence 355567777 77765443 45665 45222 111 2334 444445 35677776666555432 36667
Q ss_pred EeecC----CCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHHHHHHh
Q 027833 102 VLPFF----PTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLH 177 (218)
Q Consensus 102 ViPYl----~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~~l~ 177 (218)
|+--+ .|++.. -..+++.+. ..++|.||++.-+...+...++.....+ .-...+.+++.
T Consensus 329 VlG~~~e~G~~~~~~----------~~~l~~~~~-----~~~~d~vi~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ 391 (417)
T TIGR01143 329 VLGDMAELGEYSEEL----------HAEVGRYAN-----SLGIDLVFLVGEEAAVIYDSLGCKGFHF--ADKDELLAFLK 391 (417)
T ss_pred EEcCchhcChHHHHH----------HHHHHHHHH-----HcCCCEEEEECHHHHHHHHhcccCcEEE--CCHHHHHHHHH
Confidence 76433 111111 134677776 5678999999887765554443211112 22344556665
Q ss_pred hCCCCCCEEEE
Q 027833 178 QLPDANNLLHF 188 (218)
Q Consensus 178 ~~~~~~~~vvv 188 (218)
+....++.|++
T Consensus 392 ~~~~~~d~VLl 402 (417)
T TIGR01143 392 LELGEGDVVLV 402 (417)
T ss_pred HhcCCCCEEEE
Confidence 53234555555
No 98
>PRK08105 flavodoxin; Provisional
Probab=55.33 E-value=92 Score=24.91 Aligned_cols=111 Identities=9% Similarity=0.027 Sum_probs=54.3
Q ss_pred CcEEEEecCC---cHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecC----CchhHHHHHHH
Q 027833 15 KQVHLFYCVE---CEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFS----SPGVIFEQISV 87 (218)
Q Consensus 15 ~~~~i~~g~~---~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~----~pd~lmELlll 87 (218)
+++.|+.|+. ++.+|++|++.+ .-.-..+.+..-+|- + .+ +....+.++++.|+. .||+..+.+.-
T Consensus 2 ~~i~I~YgS~tGnte~~A~~l~~~l-~~~g~~~~~~~~~~~--~---~~-~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~ 74 (149)
T PRK08105 2 AKVGIFVGTVYGNALLVAEEAEAIL-TAQGHEVTLFEDPEL--S---DW-QPYQDELVLVVTSTTGQGDLPDSIVPLFQA 74 (149)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHH-HhCCCceEEechhhC--C---ch-hcccCCeEEEEECCCCCCCCChhHHHHHHH
Confidence 3678888776 457888888887 211112222211121 1 01 112235678888885 34776666544
Q ss_pred HHhc-ccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEE
Q 027833 88 IYAL-PRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLV 144 (218)
Q Consensus 88 ~~al-r~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vi 144 (218)
+... ....-.++.++ .-=|+.. +.---.++.+.+.|+ ..|+.+|.
T Consensus 75 l~~~~~~l~~~~~avf------GlGds~Y-~~fc~~~~~ld~~l~-----~lGa~~v~ 120 (149)
T PRK08105 75 LKDTAGYQPNLRYGVI------ALGDSSY-DNFCGAGKQFDALLQ-----EQGAKRVG 120 (149)
T ss_pred HHhcCcccCCCEEEEE------eeecCCH-HHHHHHHHHHHHHHH-----HCCCeEee
Confidence 4321 11222333321 1111111 111234677788888 68877765
No 99
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=54.65 E-value=20 Score=31.23 Aligned_cols=81 Identities=9% Similarity=0.002 Sum_probs=50.4
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhc
Q 027833 13 QKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYAL 91 (218)
Q Consensus 13 ~~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~al 91 (218)
+.+++.+++..++..+|+.++..| ..++.. ..-..|. .........+..+|++|+-|.... .++++ ++..+
T Consensus 127 ~a~~I~i~G~G~s~~~A~~~~~~l--~~~g~~-~~~~~d~--~~~~~~~~~~~~~Dv~I~iS~sg~~~~~~~---~~~~a 198 (278)
T PRK11557 127 SARRIILTGIGASGLVAQNFAWKL--MKIGIN-AVAERDM--HALLATVQALSPDDLLLAISYSGERRELNL---AADEA 198 (278)
T ss_pred cCCeEEEEecChhHHHHHHHHHHH--hhCCCe-EEEcCCh--HHHHHHHHhCCCCCEEEEEcCCCCCHHHHH---HHHHH
Confidence 446788888888888999998887 233322 2223443 222222234555789998888654 44444 55677
Q ss_pred ccCCCCeEEE
Q 027833 92 PRLFVASFTL 101 (218)
Q Consensus 92 r~~ga~~Itl 101 (218)
|+.|++-|.+
T Consensus 199 k~~ga~iI~I 208 (278)
T PRK11557 199 LRVGAKVLAI 208 (278)
T ss_pred HHcCCCEEEE
Confidence 8889876655
No 100
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=53.89 E-value=23 Score=31.09 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=49.5
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCchhHHHHHHHHHhcc
Q 027833 13 QKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALP 92 (218)
Q Consensus 13 ~~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~pd~lmELlll~~alr 92 (218)
+.+.+.+++..++..+|+.++..| . .++ ....-++|. +........+...|++|+-|...... +++-++..++
T Consensus 139 ~A~~I~i~G~G~S~~~A~~l~~~l-~-~~g-~~~~~~~d~--~~~~~~~~~~~~~Dl~I~iS~sG~t~--~~~~~~~~ak 211 (292)
T PRK11337 139 QARQRDLYGAGGSAAIARDVQHKF-L-RIG-VRCQAYDDA--HIMLMSAALLQEGDVVLVVSHSGRTS--DVIEAVELAK 211 (292)
T ss_pred cCCeEEEEEecHHHHHHHHHHHHH-h-hCC-CeEEEcCCH--HHHHHHHhcCCCCCEEEEEeCCCCCH--HHHHHHHHHH
Confidence 345567777777777888888777 2 222 233345665 43221122344579999989876522 3555667788
Q ss_pred cCCCCeEEE
Q 027833 93 RLFVASFTL 101 (218)
Q Consensus 93 ~~ga~~Itl 101 (218)
+.|++-|.+
T Consensus 212 ~~g~~ii~I 220 (292)
T PRK11337 212 KNGAKIICI 220 (292)
T ss_pred HCCCeEEEE
Confidence 889865544
No 101
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=51.55 E-value=65 Score=27.62 Aligned_cols=71 Identities=18% Similarity=0.109 Sum_probs=48.2
Q ss_pred CCcHHHHHHHHHHcCCCceeeeeEeecCC-------CCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcccC
Q 027833 23 VECEELARKVAAQSDLITLQSINWRNFAD-------GWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRL 94 (218)
Q Consensus 23 ~~~~~La~~Ia~~l~~~~~~~~~~~~FpD-------G~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~alr~~ 94 (218)
.+.-+||..+|..| |.++.-..-+++-. | -+.-++ .+|.||+.+||..+.+. ..++|. +..+++.
T Consensus 95 ~sGvPlAtmvA~el-g~elaiY~PrK~~~de~~~~~G--~iS~NF-a~V~gK~cvIVDDvittG~Ti~E~---Ie~lke~ 167 (203)
T COG0856 95 ISGVPLATMVAYEL-GKELAIYHPRKHRKDEGAGKGG--SISSNF-ASVEGKRCVIVDDVITTGSTIKET---IEQLKEE 167 (203)
T ss_pred ecCccHHHHHHHHh-CCceEEEecccccccccCCcCc--eeeccc-ccccCceEEEEecccccChhHHHH---HHHHHHc
Confidence 34558999999999 77775444344433 3 222222 37899999999998666 777775 4577888
Q ss_pred CCCeEE
Q 027833 95 FVASFT 100 (218)
Q Consensus 95 ga~~It 100 (218)
|++-+.
T Consensus 168 g~kpv~ 173 (203)
T COG0856 168 GGKPVL 173 (203)
T ss_pred CCCcEE
Confidence 885543
No 102
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.29 E-value=86 Score=29.86 Aligned_cols=138 Identities=10% Similarity=0.056 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCCceeeee--EeecCCCCCeeEEEecCCCCCCeEEEEEecC--CchhHHHHHHHHHhcccCCCCeEEEEe
Q 027833 28 LARKVAAQSDLITLQSIN--WRNFADGWPNLYINSAHDIRGQHVAFLASFS--SPGVIFEQISVIYALPRLFVASFTLVL 103 (218)
Q Consensus 28 La~~Ia~~l~~~~~~~~~--~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~--~pd~lmELlll~~alr~~ga~~ItlVi 103 (218)
.|-.++..+ |++...+. +..|..- +-+.++-... +.+.++.... +|+...+. ++.+ .+++++|+
T Consensus 327 aAia~~~~l-gi~~~~i~~aL~~f~~~--~gR~e~~~~~--~g~~~idDs~~tn~~s~~~a---l~~~----~~~ii~Il 394 (498)
T PRK02006 327 AALALARAI-GLPAAPLLHGLREYRGE--PHRVELVATI--DGVDYYDDSKGTNVGATVAA---LDGL----AQRVVLIA 394 (498)
T ss_pred HHHHHHHHc-CCCHHHHHHHHhhCCCC--CCceEEEEEE--CCEEEEEcCCCCCHHHHHHH---HHhC----CCCEEEEE
Confidence 355667777 77764443 5666443 3233322222 2355665543 22444332 3333 25777775
Q ss_pred ecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccc---ccccccccccHHHHHHHHhhCC
Q 027833 104 PFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFS---DHVLPLFETGIPLLKQRLHQLP 180 (218)
Q Consensus 104 PYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~---~~~~~l~~~~~~~l~~~l~~~~ 180 (218)
+-.+.|.-+ ++ +.+.+. ..++.||++..+...+...+. .++... .-.....+++.+..
T Consensus 395 ---Gg~~~~~~~---~~-----~~~~l~------~~~~~vi~~G~~~~~i~~~~~~~~~~~~~~--~~~~eAi~~a~~~~ 455 (498)
T PRK02006 395 ---GGDGKGQDF---SP-----LAAPVA------RHARAVVLIGRDAPAIRAALAGTGVPLVDA--ATLEEAVRAAAALA 455 (498)
T ss_pred ---cCCCCCCCH---HH-----HHHHHH------HhCCEEEEEcCCHHHHHHHHhhCCCceEec--CCHHHHHHHHHHhc
Confidence 433333322 12 244454 235899999877765544332 122111 22333444444433
Q ss_pred CCCCEEEEeCCcccHH
Q 027833 181 DANNLLHFRMMEPGSD 196 (218)
Q Consensus 181 ~~~~~vvvsPD~Ga~~ 196 (218)
..++.|++||-.++.+
T Consensus 456 ~~gd~VLlsp~~~S~d 471 (498)
T PRK02006 456 QPGDAVLLSPACASLD 471 (498)
T ss_pred CCCCEEEEChhhcccc
Confidence 5678999999887654
No 103
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=49.83 E-value=94 Score=30.08 Aligned_cols=82 Identities=11% Similarity=0.054 Sum_probs=49.7
Q ss_pred EEecCC-cHHHHHHHHHHcCCCceeee------eEeecC--CC-CCeeEEEe-----cCCCCCCeEEEEEecCCchhHHH
Q 027833 19 LFYCVE-CEELARKVAAQSDLITLQSI------NWRNFA--DG-WPNLYINS-----AHDIRGQHVAFLASFSSPGVIFE 83 (218)
Q Consensus 19 i~~g~~-~~~La~~Ia~~l~~~~~~~~------~~~~Fp--DG-~~E~~v~i-----~~~vrG~dV~Iiqs~~~pd~lmE 83 (218)
|++-+. ....|..+|+.+ ++++... .-++|- .. +++..+++ ...+.|++|++|.....--.-+.
T Consensus 295 VvpVP~s~~~~A~g~a~~~-gip~~~~L~r~r~~~r~fi~~~q~~R~~~~~~kl~~~~~~i~gk~VlLVDDsittGtTl~ 373 (474)
T PRK06388 295 VVPVPDSGRSQAIGFSMAS-GIPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISGKRIVLVDDSIVRGNTMR 373 (474)
T ss_pred EEeeCCCcHHHHHHHHHHh-CCCchhheEEecccCCcccCCchhhhhhceeEEeccccccccCceEEEEeCeECcHHHHH
Confidence 334333 335688899999 8887431 122222 21 12222333 23568999999977655533333
Q ss_pred HHHHHHhcccCCCCeEEEEe
Q 027833 84 QISVIYALPRLFVASFTLVL 103 (218)
Q Consensus 84 Llll~~alr~~ga~~ItlVi 103 (218)
-++++|+++||+.|.+-+
T Consensus 374 --~~~~~L~~aGak~V~~ri 391 (474)
T PRK06388 374 --FIVKIMRKYGAKEVHVRI 391 (474)
T ss_pred --HHHHHHHHcCCCEEEEEe
Confidence 467788899999998875
No 104
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=49.79 E-value=32 Score=28.29 Aligned_cols=39 Identities=10% Similarity=0.056 Sum_probs=29.4
Q ss_pred HHHHHHHHhhCC-CCCCEEEEeCCcccHHHHHHHHHHcCc
Q 027833 169 IPLLKQRLHQLP-DANNLLHFRMMEPGSDSTRCWIISLRW 207 (218)
Q Consensus 169 ~~~l~~~l~~~~-~~~~~vvvsPD~Ga~~ra~~~a~~l~~ 207 (218)
+..+++.+.+.. +.++++|++++.||..++..+++.|+.
T Consensus 16 i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~ 55 (176)
T PRK05205 16 LTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQ 55 (176)
T ss_pred HHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHH
Confidence 344566664421 236799999999999999999999964
No 105
>PLN02293 adenine phosphoribosyltransferase
Probab=46.91 E-value=26 Score=29.53 Aligned_cols=36 Identities=11% Similarity=-0.016 Sum_probs=28.2
Q ss_pred HHHHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCc
Q 027833 169 IPLLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRW 207 (218)
Q Consensus 169 ~~~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~ 207 (218)
.+.++++++. .+..+|++|+.||...|..+|..||.
T Consensus 51 ~~~l~~~~~~---~~~d~Ivg~e~~Gi~lA~~lA~~Lg~ 86 (187)
T PLN02293 51 IDLFVERYRD---MGISVVAGIEARGFIFGPPIALAIGA 86 (187)
T ss_pred HHHHHHHHhh---cCCCEEEEeCCCchHHHHHHHHHHCC
Confidence 4455555543 34568999999999999999999985
No 106
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=46.87 E-value=1.5e+02 Score=23.91 Aligned_cols=98 Identities=12% Similarity=0.032 Sum_probs=59.5
Q ss_pred HHHHHHHHhcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccc
Q 027833 82 FEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHV 161 (218)
Q Consensus 82 mELlll~~alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~ 161 (218)
.|++-.+..+++.+. .+++++- |...........+ ..|+|+++.++-- ....| + .
T Consensus 22 ~e~l~~A~~l~~~~~-~v~~v~~-------------G~~~~~~~~~~~~------~~Gad~v~~~~~~--~~~~~-~--~ 76 (181)
T cd01985 22 LEAVEAALRLKEYGG-EVTALVI-------------GPPAAEVALREAL------AMGADKVLLVEDP--ALAGY-D--P 76 (181)
T ss_pred HHHHHHHHHHhhcCC-eEEEEEE-------------CChHHHHHHHHHH------HhCCCEEEEEecC--cccCC-C--h
Confidence 466666666654223 4666531 4433333334444 4899999999832 12121 1 1
Q ss_pred cccccccHHHHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCcccc
Q 027833 162 LPLFETGIPLLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRWCVP 210 (218)
Q Consensus 162 ~~l~~~~~~~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~~~~ 210 (218)
+ .....+++.+++. ..+.++++...-+.+-+-.+|..||+-+-
T Consensus 77 ~----~~a~~l~~~i~~~--~p~~Vl~g~t~~g~~la~rlA~~L~~~~v 119 (181)
T cd01985 77 E----ATAKALAALIKKE--KPDLILAGATSIGKQLAPRVAALLGVPQI 119 (181)
T ss_pred H----HHHHHHHHHHHHh--CCCEEEECCcccccCHHHHHHHHhCCCcc
Confidence 1 2245677777663 35677777778888999999999998654
No 107
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=46.35 E-value=58 Score=22.30 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=27.0
Q ss_pred CcEEEEecCCcHHHHHHHHHHcC-CCceeeeeEeecCCC
Q 027833 15 KQVHLFYCVECEELARKVAAQSD-LITLQSINWRNFADG 52 (218)
Q Consensus 15 ~~~~i~~g~~~~~La~~Ia~~l~-~~~~~~~~~~~FpDG 52 (218)
..+.++.+++...|+++|.+.|. |..+...-.-.|..+
T Consensus 4 ~~Yr~lt~~d~~~fc~rVt~aL~~GW~l~GsP~~t~~~~ 42 (54)
T PF08410_consen 4 KHYRVLTGPDDSAFCHRVTEALNEGWQLYGSPTYTFDGG 42 (54)
T ss_pred ceeEEEECCChHHHHHHHHHHHHcCCEecCCceEEECCC
Confidence 34889999999999999999983 344544444444443
No 108
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=45.80 E-value=29 Score=31.72 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=36.9
Q ss_pred CeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCC
Q 027833 97 ASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIH 149 (218)
Q Consensus 97 ~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlH 149 (218)
..+|.+.|=- -.+++|+.|.+++...++.|++ +|.++|++.++-
T Consensus 6 Hd~t~~~p~~---~k~~~~~kG~vi~~~di~~L~~------~G~~~v~v~~~~ 49 (312)
T cd03522 6 HDITRIGPGE---FKGRAFKKGHVLTAEDIAALLA------AGKEHVYVARLE 49 (312)
T ss_pred eeeecccCCc---ccCceecCCCCCCHHHHHHHHh------CCCcEEEEEECC
Confidence 5677777643 2788999999999999999997 999999998764
No 109
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=45.55 E-value=28 Score=28.60 Aligned_cols=27 Identities=7% Similarity=-0.241 Sum_probs=23.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHHcCcc
Q 027833 182 ANNLLHFRMMEPGSDSTRCWIISLRWC 208 (218)
Q Consensus 182 ~~~~vvvsPD~Ga~~ra~~~a~~l~~~ 208 (218)
.+..+|++|+.||...|..+|..|+.-
T Consensus 53 ~~~d~Ivg~~~gG~~~A~~la~~l~~~ 79 (173)
T TIGR00336 53 LEFDVIAGPALGGIPIATAVSVKLAKP 79 (173)
T ss_pred CCCCEEEccccChHHHHHHHHHHhcCc
Confidence 456899999999999999999999843
No 110
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=44.84 E-value=37 Score=28.42 Aligned_cols=36 Identities=11% Similarity=-0.153 Sum_probs=27.9
Q ss_pred HHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCc
Q 027833 171 LLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRW 207 (218)
Q Consensus 171 ~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~ 207 (218)
.+++.+... +.+..+|++++.|+...|..+|..|+.
T Consensus 47 ~La~~i~~~-~~~~d~Ivgi~~gGi~~A~~la~~L~~ 82 (187)
T TIGR01367 47 ELAQKILDY-GLKVDFIVGPAMGGVILGYEVARQLSV 82 (187)
T ss_pred HHHHHHHHh-CCCCCEEEEEccCcHHHHHHHHHHhCC
Confidence 455555432 336689999999999999999999984
No 111
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=44.56 E-value=24 Score=26.38 Aligned_cols=41 Identities=7% Similarity=-0.041 Sum_probs=31.0
Q ss_pred HHHHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCcccc
Q 027833 169 IPLLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRWCVP 210 (218)
Q Consensus 169 ~~~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~~~~ 210 (218)
...+++++.+. ..+..+|++|..||...|..++..|+.-+.
T Consensus 14 ~~~la~~i~~~-~~~~~~ivgi~~~G~~~a~~la~~l~~~~~ 54 (125)
T PF00156_consen 14 AERLAEQIKES-GFDFDVIVGIPRGGIPLAAALARALGIPLV 54 (125)
T ss_dssp HHHHHHHHHHH-TTTSSEEEEETTTTHHHHHHHHHHHTHEEE
T ss_pred HHHHHHHHHHh-CCCCCEEEeehhccHHHHHHHHHHhCCCcc
Confidence 45567777653 334455999999999999999999987444
No 112
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=44.05 E-value=87 Score=28.85 Aligned_cols=145 Identities=9% Similarity=0.088 Sum_probs=78.5
Q ss_pred HhhhhhcCCCcEEEEecCCcH-HHHHHHHHHcCCCcee-eeeEeecCCCCCeeE-E-EecCCCCCCeEEEEEecCCc-hh
Q 027833 6 EIKAKKSQKKQVHLFYCVECE-ELARKVAAQSDLITLQ-SINWRNFADGWPNLY-I-NSAHDIRGQHVAFLASFSSP-GV 80 (218)
Q Consensus 6 ~~~~~~~~~~~~~i~~g~~~~-~La~~Ia~~l~~~~~~-~~~~~~FpDG~~E~~-v-~i~~~vrG~dV~Iiqs~~~p-d~ 80 (218)
-+|.+..+..+.+|++--... .=+..+|..| +.... ....++=.+ |+. . -+-.+|+|+.+++|..+.+. -.
T Consensus 154 ~ir~~~~~~~~~vivSPdaGgaKR~~s~ad~l-~~~fali~ker~k~~---~v~~~m~LVGDv~gkvailVDDm~dt~GT 229 (316)
T KOG1448|consen 154 YIRENIPDSENAVIVSPDAGGAKRVTSLADRL-NLDFALIHKERRKAN---EVDIRMVLVGDVKGKVAILVDDMADTCGT 229 (316)
T ss_pred HHHhhCCCccceEEECCCcchhhhhHHHHHhh-cchhhhhhhhhhccc---ccceEEEEEeccCCcEEEEecccccccch
Confidence 345555666777666544432 2345566666 44432 222333333 333 2 23469999999999888544 33
Q ss_pred HHHHHHHHHhcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccccc
Q 027833 81 IFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDH 160 (218)
Q Consensus 81 lmELlll~~alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~ 160 (218)
+ ..-++-|.+.||++|.++.|.-=++ ....-++=+ + -.+++++..----.-...+ ..
T Consensus 230 l---~~aa~~L~~~GA~kV~a~~THgVfs-------------~~a~er~~~-----s-~~~~~vvtnt~p~~~~~~~-~~ 286 (316)
T KOG1448|consen 230 L---IKAADKLLEHGAKKVYAIVTHGVFS-------------GPAIERLNE-----S-ALDRVVVTNTIPIDDSCLE-PK 286 (316)
T ss_pred H---HHHHHHHHhcCCceEEEEEcceecc-------------ccHHHHhhh-----c-ccceEEEEEeecccccccC-Cc
Confidence 3 3345556679999999998875333 333333333 3 4466665442211111222 23
Q ss_pred ccccccccHHHHHHHHhhC
Q 027833 161 VLPLFETGIPLLKQRLHQL 179 (218)
Q Consensus 161 ~~~l~~~~~~~l~~~l~~~ 179 (218)
...+ ...+.+++.++..
T Consensus 287 ~~~I--dvs~~~ae~irr~ 303 (316)
T KOG1448|consen 287 LTTI--DVSPVLAEAIRRT 303 (316)
T ss_pred ccEE--eeccccchheEEe
Confidence 3345 5567788877653
No 113
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=43.40 E-value=26 Score=28.65 Aligned_cols=27 Identities=7% Similarity=-0.206 Sum_probs=24.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHHcCccc
Q 027833 183 NNLLHFRMMEPGSDSTRCWIISLRWCV 209 (218)
Q Consensus 183 ~~~vvvsPD~Ga~~ra~~~a~~l~~~~ 209 (218)
+..+|++|+.|+...|..+|..|+.-+
T Consensus 51 ~~d~Ivgv~~~Gi~~a~~la~~l~~p~ 77 (175)
T PRK02304 51 DIDKIVGIEARGFIFGAALAYKLGIGF 77 (175)
T ss_pred CCCEEEEEccchHHHHHHHHHHhCCCE
Confidence 457999999999999999999999653
No 114
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=42.95 E-value=14 Score=32.33 Aligned_cols=91 Identities=16% Similarity=0.156 Sum_probs=54.1
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCC---CCe----eEEEe-------cCCCCCCeEEEEEecCCc--
Q 027833 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADG---WPN----LYINS-------AHDIRGQHVAFLASFSSP-- 78 (218)
Q Consensus 15 ~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG---~~E----~~v~i-------~~~vrG~dV~Iiqs~~~p-- 78 (218)
..+.++.-+++..+-.+..+.+ .-+-..+...|+|-+ .+| ..-++ ..+ .+=|+++...++..
T Consensus 8 ~riGlIvpssn~t~E~e~~~~~-~p~~v~~h~sRi~~~~~vt~e~L~~m~~~l~~aa~~ll~~-a~~dvi~~~cTsgs~~ 85 (239)
T TIGR02990 8 KRIGLVILATDHTSERDFARMV-ASDRIGVYVNRIPYANPTTPENLRKMQPRLTEAAALILPD-EELDVVAYSCTSASVV 85 (239)
T ss_pred ceEEEEECCCCCchHHHHHHHh-CcCCeEEEEeceeCCCCCCHHHHHHHhhhHHHHHHHhcCC-CCCCEEEEccchhhee
Confidence 3467777788777777777766 322234455556432 000 00011 111 13467777666432
Q ss_pred ---hhHHHHHH--------------HHHhcccCCCCeEEEEeecCC
Q 027833 79 ---GVIFEQIS--------------VIYALPRLFVASFTLVLPFFP 107 (218)
Q Consensus 79 ---d~lmELll--------------l~~alr~~ga~~ItlViPYl~ 107 (218)
+.+.+.+. +++||+..|++||.++-||.+
T Consensus 86 ~G~~~~~~~i~~~~~g~p~tt~~~A~~~AL~alg~~RIalvTPY~~ 131 (239)
T TIGR02990 86 IGDDEVTRAINAAKPGTPVVTPSSAAVDGLAALGVRRISLLTPYTP 131 (239)
T ss_pred cCHHHHHHHHHhcCCCCCeeCHHHHHHHHHHHcCCCEEEEECCCcH
Confidence 55555553 578899999999999999975
No 115
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=42.39 E-value=1.2e+02 Score=22.81 Aligned_cols=36 Identities=6% Similarity=0.013 Sum_probs=23.1
Q ss_pred CCCCCeEEEEEecCCc-hhHHHHHHHHHhcccCCCCeEEE
Q 027833 63 DIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFVASFTL 101 (218)
Q Consensus 63 ~vrG~dV~Iiqs~~~p-d~lmELlll~~alr~~ga~~Itl 101 (218)
....+|++|+-|.+.. .++++ .++.+|+.|++-|.+
T Consensus 40 ~~~~~dl~I~iS~SG~t~e~i~---~~~~a~~~g~~iI~I 76 (119)
T cd05017 40 FVDRKTLVIAVSYSGNTEETLS---AVEQAKERGAKIVAI 76 (119)
T ss_pred CCCCCCEEEEEECCCCCHHHHH---HHHHHHHCCCEEEEE
Confidence 4555789998887654 45555 455667788755443
No 116
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=42.17 E-value=1.5e+02 Score=23.98 Aligned_cols=75 Identities=11% Similarity=0.062 Sum_probs=45.5
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcc
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALP 92 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~alr 92 (218)
.+++.+++.-+|..+|+.++..| . .++ ....-.+|. . ......+|++|+-|.... .++. .++..++
T Consensus 33 a~~I~i~G~G~S~~~A~~~~~~l-~-~~g-~~~~~~~~~--~-----~~~~~~~D~vI~iS~sG~t~~~i---~~~~~ak 99 (179)
T cd05005 33 AKRIFVYGAGRSGLVAKAFAMRL-M-HLG-LNVYVVGET--T-----TPAIGPGDLLIAISGSGETSSVV---NAAEKAK 99 (179)
T ss_pred CCeEEEEecChhHHHHHHHHHHH-H-hCC-CeEEEeCCC--C-----CCCCCCCCEEEEEcCCCCcHHHH---HHHHHHH
Confidence 36677877777777888888776 2 111 112222332 1 234556789998888655 4444 4556677
Q ss_pred cCCCCeEEE
Q 027833 93 RLFVASFTL 101 (218)
Q Consensus 93 ~~ga~~Itl 101 (218)
+.|++-|.+
T Consensus 100 ~~g~~iI~I 108 (179)
T cd05005 100 KAGAKVVLI 108 (179)
T ss_pred HCCCeEEEE
Confidence 888866554
No 117
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=42.14 E-value=53 Score=29.89 Aligned_cols=82 Identities=7% Similarity=-0.074 Sum_probs=42.1
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCchhHHHHHHHHHhccc
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPR 93 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~pd~lmELlll~~alr~ 93 (218)
-+.+.++ |.++...+...++.+ -.++..+...-+++. |....-...+..++++|.-|.+.. --|++.++..+|+
T Consensus 44 ~~~I~~~-g~GsS~~aa~~~~~~-~~k~~~i~v~~~~~~--~~~~~~~~~~~~~~lvI~iS~SGe--T~e~i~al~~ak~ 117 (340)
T PRK11382 44 IDRIYFV-ACGSPLNAAQTAKHL-ADRFSDLQVYAISGW--EFCDNTPYRLDDRCAVIGVSDYGK--TEEVIKALELGRA 117 (340)
T ss_pred CCEEEEE-EechHHHHHHHHHHH-HHHHcCCCeEEeccH--HHHhcCCcCCCCCCEEEEEcCCCC--CHHHHHHHHHHHH
Confidence 3445554 455445444444322 122223334557777 665444434555678887776543 2244555566677
Q ss_pred CCCCeEEE
Q 027833 94 LFVASFTL 101 (218)
Q Consensus 94 ~ga~~Itl 101 (218)
.|++.|.+
T Consensus 118 ~Ga~~I~I 125 (340)
T PRK11382 118 CGALTAAF 125 (340)
T ss_pred cCCeEEEE
Confidence 78754433
No 118
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=41.35 E-value=30 Score=28.24 Aligned_cols=36 Identities=22% Similarity=0.028 Sum_probs=27.9
Q ss_pred HHHHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCc
Q 027833 169 IPLLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRW 207 (218)
Q Consensus 169 ~~~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~ 207 (218)
...+++.+.. .+..+|++|+.||...|..+|..|+.
T Consensus 35 ~~~la~~i~~---~~~d~ivgi~~~G~~~A~~la~~L~~ 70 (169)
T TIGR01090 35 IDLLVERYKD---ANIDYIVGPEARGFIFGAALAYKLGV 70 (169)
T ss_pred HHHHHHHhcc---CCCCEEEeehhccHHHHHHHHHHHCC
Confidence 3445555543 34579999999999999999999986
No 119
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=41.17 E-value=31 Score=28.15 Aligned_cols=70 Identities=9% Similarity=0.048 Sum_probs=49.3
Q ss_pred CcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHHHHHHh-hCCCCCCEEEEeCC------
Q 027833 119 DVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLH-QLPDANNLLHFRMM------ 191 (218)
Q Consensus 119 e~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~~l~-~~~~~~~~vvvsPD------ 191 (218)
.-.|..--.++|+ ..|+|.++.+| |+..+.++ ++...+-++|. ++ .-..+||..|
T Consensus 60 ~l~s~~ek~~~l~-----~~Gvd~~~~~~---------F~~~~~~l--s~~~Fi~~iL~~~l--~~~~ivvG~DfrFG~~ 121 (157)
T PF06574_consen 60 LLTSLEEKLELLE-----SLGVDYVIVIP---------FTEEFANL--SPEDFIEKILKEKL--NVKHIVVGEDFRFGKN 121 (157)
T ss_dssp BSS-HHHHHHHHH-----HTTESEEEEE----------CCCHHCCS---HHHHHHHHCCCHC--TEEEEEEETT-EESGG
T ss_pred CCCCHHHHHHHHH-----HcCCCEEEEec---------chHHHHcC--CHHHHHHHHHHhcC--CccEEEEccCccCCCC
Confidence 3677888899999 89999999997 55556677 77777777776 33 3346899999
Q ss_pred -cccHHHHHHHHHHcC
Q 027833 192 -EPGSDSTRCWIISLR 206 (218)
Q Consensus 192 -~Ga~~ra~~~a~~l~ 206 (218)
.|..+.-+.++...|
T Consensus 122 ~~G~~~~L~~~~~~~g 137 (157)
T PF06574_consen 122 RSGDVELLKELGKEYG 137 (157)
T ss_dssp GEEEHHHHHHCTTTT-
T ss_pred CCCCHHHHHHhcccCc
Confidence 667776666666554
No 120
>PRK02259 aspartoacylase; Provisional
Probab=41.16 E-value=1.5e+02 Score=26.47 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=16.1
Q ss_pred CeEEEEEecCCc-----hhHHHHHHHHHhccc
Q 027833 67 QHVAFLASFSSP-----GVIFEQISVIYALPR 93 (218)
Q Consensus 67 ~dV~Iiqs~~~p-----d~lmELlll~~alr~ 93 (218)
++|+|+..++.+ ..+.+++--.+....
T Consensus 3 ~~v~i~aGvHGnE~~Gv~~v~~l~~~~~~~~~ 34 (288)
T PRK02259 3 NRVAIVGGTHGNEITGIYLVKKWQQQPNLINR 34 (288)
T ss_pred cEEEEEcCccCChhHHHHHHHHHHhccccccc
Confidence 578888888776 444444444444433
No 121
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=40.48 E-value=80 Score=27.98 Aligned_cols=78 Identities=15% Similarity=0.078 Sum_probs=44.6
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCchhHHHHHHHHHhcccC
Q 027833 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRL 94 (218)
Q Consensus 15 ~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~pd~lmELlll~~alr~~ 94 (218)
+.+.+++.-+|...|+.++.+| ..++.... -+.|. +....-......+|++|+-|.+.. --+++.++..+|+.
T Consensus 43 ~~I~i~G~G~S~~~A~~~~~~l--~~~g~~~~-~~~~~--~~~~~~~~~~~~~d~~i~iS~sG~--t~~~~~~~~~ak~~ 115 (321)
T PRK11543 43 GKVVVSGIGKSGHIGKKIAATL--ASTGTPAF-FVHPA--EALHGDLGMIESRDVMLFISYSGG--AKELDLIIPRLEDK 115 (321)
T ss_pred CcEEEEecChhHHHHHHHHHHH--HcCCCcee-ecChH--HHhhCCcCccCCCCEEEEEeCCCC--cHHHHHHHHHHHHc
Confidence 4677777777777888888887 22322211 11222 222222234455689999888644 22345556677788
Q ss_pred CCCeE
Q 027833 95 FVASF 99 (218)
Q Consensus 95 ga~~I 99 (218)
|++-|
T Consensus 116 g~~vI 120 (321)
T PRK11543 116 SIALL 120 (321)
T ss_pred CCeEE
Confidence 86544
No 122
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=40.44 E-value=1.6e+02 Score=23.74 Aligned_cols=76 Identities=11% Similarity=0.031 Sum_probs=44.7
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhc
Q 027833 13 QKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYAL 91 (218)
Q Consensus 13 ~~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~al 91 (218)
+.+++.+++.-.+..+|+.++..|. .++ ....-.+|. . ...+..+|++|+-|.+.. .++++ ++..+
T Consensus 29 ~a~~I~i~G~G~S~~~A~~~~~~l~--~~g-~~~~~~~~~--~-----~~~~~~~Dv~I~iS~sG~t~~~i~---~~~~a 95 (179)
T TIGR03127 29 KAKRIFVAGAGRSGLVGKAFAMRLM--HLG-FNVYVVGET--T-----TPSIKKGDLLIAISGSGETESLVT---VAKKA 95 (179)
T ss_pred hCCEEEEEecCHHHHHHHHHHHHHH--hCC-CeEEEeCCc--c-----cCCCCCCCEEEEEeCCCCcHHHHH---HHHHH
Confidence 3456777776667777888877762 221 112222332 1 234555799999898654 44444 45557
Q ss_pred ccCCCCeEEE
Q 027833 92 PRLFVASFTL 101 (218)
Q Consensus 92 r~~ga~~Itl 101 (218)
++.|++-|.+
T Consensus 96 k~~g~~ii~I 105 (179)
T TIGR03127 96 KEIGATVAAI 105 (179)
T ss_pred HHCCCeEEEE
Confidence 8888766554
No 123
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=40.04 E-value=20 Score=31.99 Aligned_cols=76 Identities=22% Similarity=0.205 Sum_probs=45.8
Q ss_pred CCcEEEEecCCc---HHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEE--Eec---CCchhHHHHH
Q 027833 14 KKQVHLFYCVEC---EELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFL--ASF---SSPGVIFEQI 85 (218)
Q Consensus 14 ~~~~~i~~g~~~---~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Ii--qs~---~~pd~lmELl 85 (218)
+..+.|+.|++- ..|++.+-... .+++++ |.| ++.+- .+.|++|+++ |.- ..|..+- .-
T Consensus 7 ~~~igiIgGSGl~~~~~l~~~~~~~~-~tpyg~------p~~--~l~~g---~l~g~~v~~l~RhGr~H~y~~~~i~-~~ 73 (267)
T PRK08564 7 KASIGIIGGSGLYDPGIFENSKEVKV-YTPYGE------PSD--NIIIG---EIEGVEVAFLPRHGRGHRIPPHKIN-YR 73 (267)
T ss_pred CceEEEEecCCCCCCcccccceeeeE-EcCCCC------Ccc--CEEEE---EECCEEEEEEeCCCCCcccCCccCc-ch
Confidence 356889999986 44544443333 344543 456 54442 3457899998 432 2333332 34
Q ss_pred HHHHhcccCCCCeEEEE
Q 027833 86 SVIYALPRLFVASFTLV 102 (218)
Q Consensus 86 ll~~alr~~ga~~ItlV 102 (218)
.-+.+|+..|++.|...
T Consensus 74 a~i~aLk~LGvk~iI~t 90 (267)
T PRK08564 74 ANIWALKELGVEWVIAV 90 (267)
T ss_pred HHHHHHHHCCCcEEEEe
Confidence 56788999999987653
No 124
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=39.78 E-value=64 Score=22.21 Aligned_cols=77 Identities=16% Similarity=0.104 Sum_probs=41.1
Q ss_pred EEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEe-cCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcccCCC
Q 027833 19 LFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINS-AHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFV 96 (218)
Q Consensus 19 i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i-~~~vrG~dV~Iiqs~~~p-d~lmELlll~~alr~~ga 96 (218)
+++.-++..+|......+ . +.......-.++. +..... ......+|++|+-|.... .++.+ +++.+|+.|+
T Consensus 3 i~g~G~s~~~a~~~~~~l-~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~---~~~~a~~~g~ 75 (87)
T cd04795 3 VIGIGGSGAIAAYFALEL-L-ELTGIEVVALIAT--ELEHASLLSLLRKGDVVIALSYSGRTEELLA---ALEIAKELGI 75 (87)
T ss_pred EEEcCHHHHHHHHHHHHH-h-cccCCceEEeCCc--HHHHHHHHhcCCCCCEEEEEECCCCCHHHHH---HHHHHHHcCC
Confidence 444445667777777776 2 2212333333444 322111 223444688888787654 44444 5567788888
Q ss_pred CeEEEE
Q 027833 97 ASFTLV 102 (218)
Q Consensus 97 ~~ItlV 102 (218)
+-|.+.
T Consensus 76 ~ii~it 81 (87)
T cd04795 76 PVIAIT 81 (87)
T ss_pred eEEEEe
Confidence 655443
No 125
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=39.77 E-value=41 Score=28.21 Aligned_cols=40 Identities=3% Similarity=-0.115 Sum_probs=30.6
Q ss_pred HHHHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCcc
Q 027833 169 IPLLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRWC 208 (218)
Q Consensus 169 ~~~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~~ 208 (218)
...+++.|.+.....+++|+++..||.-.|..+++.|+.+
T Consensus 21 i~~lA~~I~~~~~~~~~vivgi~~Gg~~fa~~L~~~L~~~ 60 (189)
T PLN02238 21 VAELAAQIASDYAGKSPVVLGVATGAFMFLADLVRAIQPL 60 (189)
T ss_pred HHHHHHHHHHHcCCCCcEEEEEccCCHHHHHHHHHHhCcc
Confidence 3346666655323356899999999999999999999863
No 126
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=39.54 E-value=87 Score=25.60 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=0.0
Q ss_pred eEEEEEecCCc-hhHHHHHHHHHhcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEE
Q 027833 68 HVAFLASFSSP-GVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVI 145 (218)
Q Consensus 68 dV~Iiqs~~~p-d~lmELlll~~alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vit 145 (218)
+|+.++|+ . ...-..--++++||+.|+..|.+++ |-.++-..+-++-+ +|++++++
T Consensus 65 ~vIgvSsl--~g~h~~l~~~lve~lre~G~~~i~v~~--------------GGvip~~d~~~l~~------~G~~~if~ 121 (143)
T COG2185 65 DVIGVSSL--DGGHLTLVPGLVEALREAGVEDILVVV--------------GGVIPPGDYQELKE------MGVDRIFG 121 (143)
T ss_pred CEEEEEec--cchHHHHHHHHHHHHHHhCCcceEEee--------------cCccCchhHHHHHH------hCcceeeC
No 127
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=39.34 E-value=82 Score=26.98 Aligned_cols=68 Identities=25% Similarity=0.256 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHhcccCCCCeEEEEeecCCCccccccC-CCCC-cchHHHHHHHHh----cCCCCCCCCCEEEEEeCCch
Q 027833 79 GVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERME-EEGD-VATAFTMARILS----NIPTSRGGPTSLVIYDIHAL 151 (218)
Q Consensus 79 d~lmELlll~~alr~~ga~~ItlViPYl~YsRQDR~~-~~Ge-~vsak~va~lL~----~~~~~~~G~d~vitvDlHs~ 151 (218)
|.++--.+...++++.|. .+|+|=++|.-..-.. .||. .++..++.++|. |+- ..|+.+++.+.-|-.
T Consensus 38 D~~ia~~~a~~~a~~~~~---~lv~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~--~~Gf~~ivivngHgG 111 (237)
T PF02633_consen 38 DTLIAEAVAERAAERLGE---ALVLPPIPYGCSPHHMGFPGTISLSPETLIALLRDILRSLA--RHGFRRIVIVNGHGG 111 (237)
T ss_dssp HHHHHHHHHHHHHHHHTH---EEE---B--BB-GCCTTSTT-BBB-HHHHHHHHHHHHHHHH--HHT--EEEEEESSTT
T ss_pred HHHHHHHHHHHHHHHCCc---EEEeCCCccccCcccCCCCCeEEeCHHHHHHHHHHHHHHHH--HcCCCEEEEEECCHh
Confidence 888888888899998886 8999988887643332 3443 344444443332 111 489999999999964
No 128
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=38.73 E-value=2.5e+02 Score=24.13 Aligned_cols=76 Identities=17% Similarity=0.112 Sum_probs=49.7
Q ss_pred cEEEEecCC--cHHHHHHHHHHcCCCcee-eeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhc
Q 027833 16 QVHLFYCVE--CEELARKVAAQSDLITLQ-SINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYAL 91 (218)
Q Consensus 16 ~~~i~~g~~--~~~La~~Ia~~l~~~~~~-~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~al 91 (218)
+.-++.|+. .-++|..+|..| + ... ....++++.+.-+..........|+.|+||-.+.+- ..++|- ++++
T Consensus 61 ~~d~v~G~a~ggiP~A~~~a~~l-~-~~~~~~~~Rke~K~hG~~~~ieG~~~~G~kVvvVEDViTTG~Si~ea---i~~l 135 (201)
T COG0461 61 EFDVVAGPALGGIPLAAATALAL-A-HLPPMAYVRKEAKDHGTGGLIEGGEVKGEKVVVVEDVITTGGSILEA---VEAL 135 (201)
T ss_pred CCcEEEeccccchHHHHHHHHHh-c-cCCcEEEEeceeccCCCcceeEecCCCCCEEEEEEecccCCHhHHHH---HHHH
Confidence 455666766 447899999988 4 221 445667766422533333334499999999887665 777764 5667
Q ss_pred ccCCC
Q 027833 92 PRLFV 96 (218)
Q Consensus 92 r~~ga 96 (218)
+++|+
T Consensus 136 ~~~G~ 140 (201)
T COG0461 136 REAGA 140 (201)
T ss_pred HHcCC
Confidence 78887
No 129
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=38.61 E-value=48 Score=27.75 Aligned_cols=26 Identities=8% Similarity=-0.140 Sum_probs=22.9
Q ss_pred CCCCEEEEeCCcccHHHHHHHHHHcC
Q 027833 181 DANNLLHFRMMEPGSDSTRCWIISLR 206 (218)
Q Consensus 181 ~~~~~vvvsPD~Ga~~ra~~~a~~l~ 206 (218)
+.+-.+|++||.|+...|..+|..++
T Consensus 49 ~~~~D~Ivg~e~~Gi~lA~~vA~~l~ 74 (187)
T PRK12560 49 DKDIDKIVTEEDKGAPLATPVSLLSG 74 (187)
T ss_pred CCCCCEEEEEccccHHHHHHHHHhhC
Confidence 34556999999999999999999988
No 130
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=38.46 E-value=3e+02 Score=24.86 Aligned_cols=78 Identities=8% Similarity=-0.044 Sum_probs=39.5
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCCcee-eeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhc
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDLITLQ-SINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYAL 91 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~~~~~-~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~al 91 (218)
.+++.+++.-+|...++.+...+ . ..+ .....-+.|- .++..+..+|++|+-|.+.. .++++ .+..+
T Consensus 21 ~~~I~i~G~G~S~~~a~~l~~~l-~-~~~~~~~v~~~~d~------~l~~~~~~~dlvI~iS~SG~t~e~~~---a~~~A 89 (308)
T TIGR02128 21 YDEIVICGMGGSGIAGRIISILL-L-EKSFQGPVFVVKDY------RLPRFVDGKTLLIAVSYSGNTEETLS---AVEEA 89 (308)
T ss_pred CCEEEEEEecHHHHHHHHHHHHH-H-HhCCCccEEEEcCc------cccccCCCCeEEEEEcCCCCCHHHHH---HHHHH
Confidence 35555555334444555555555 2 222 1222223332 23344555788888887654 44444 45555
Q ss_pred ccCCCCeEEEEe
Q 027833 92 PRLFVASFTLVL 103 (218)
Q Consensus 92 r~~ga~~ItlVi 103 (218)
++.|++ ++++-
T Consensus 90 ~~~g~~-ii~iT 100 (308)
T TIGR02128 90 KKKGAK-VIAIT 100 (308)
T ss_pred HHcCCE-EEEEC
Confidence 677774 44444
No 131
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=37.24 E-value=41 Score=29.81 Aligned_cols=80 Identities=13% Similarity=0.031 Sum_probs=51.1
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcc
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALP 92 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~alr 92 (218)
-+.+.++++.+|..+|...+.+|. . ......-.+|. .............||+|+-|..+- .++ +-.+..+|
T Consensus 130 A~rI~~~G~g~S~~vA~~~~~~l~--~-ig~~~~~~~d~--~~~~~~~~~~~~~Dv~i~iS~sG~t~e~---i~~a~~ak 201 (281)
T COG1737 130 ARRIYFFGLGSSGLVASDLAYKLM--R-IGLNVVALSDT--HGQLMQLALLTPGDVVIAISFSGYTREI---VEAAELAK 201 (281)
T ss_pred CCeEEEEEechhHHHHHHHHHHHH--H-cCCceeEecch--HHHHHHHHhCCCCCEEEEEeCCCCcHHH---HHHHHHHH
Confidence 355788888888888998888872 2 22333444554 222222345566799999888654 444 44566788
Q ss_pred cCCCCeEEE
Q 027833 93 RLFVASFTL 101 (218)
Q Consensus 93 ~~ga~~Itl 101 (218)
+.|++-|.+
T Consensus 202 ~~ga~vIai 210 (281)
T COG1737 202 ERGAKVIAI 210 (281)
T ss_pred HCCCcEEEE
Confidence 899876655
No 132
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=35.44 E-value=2.7e+02 Score=23.46 Aligned_cols=84 Identities=14% Similarity=0.095 Sum_probs=55.8
Q ss_pred cEEEE-ecCCcHHHHHHHHHHcCCCceeeeeEeecC-CCCCe-eEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhc
Q 027833 16 QVHLF-YCVECEELARKVAAQSDLITLQSINWRNFA-DGWPN-LYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYAL 91 (218)
Q Consensus 16 ~~~i~-~g~~~~~La~~Ia~~l~~~~~~~~~~~~Fp-DG~~E-~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~al 91 (218)
++.++ -..+...|.+.+.+.+-+.+++.+-..+=+ .++++ .|.++++++.++.|+++.++... ..++.. ++.|
T Consensus 68 ~i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s~~~a---i~~L 144 (207)
T PF14681_consen 68 KICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGSAIAA---IEIL 144 (207)
T ss_dssp CEEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHHHHHH---HHHH
T ss_pred cEEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhhHHHH---HHHH
Confidence 44444 356777899999988867888888887755 35333 45668888999999999887554 444433 3444
Q ss_pred ccCCC--CeEEEE
Q 027833 92 PRLFV--ASFTLV 102 (218)
Q Consensus 92 r~~ga--~~ItlV 102 (218)
++.|+ ++|+++
T Consensus 145 ~~~G~~~~~I~~v 157 (207)
T PF14681_consen 145 KEHGVPEENIIIV 157 (207)
T ss_dssp HHTTG-GGEEEEE
T ss_pred HHcCCCcceEEEE
Confidence 56665 677664
No 133
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=35.38 E-value=1.2e+02 Score=21.43 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=22.1
Q ss_pred ecCCchhHHHHHHHHHhcccCCCCeEEEEeec
Q 027833 74 SFSSPGVIFEQISVIYALPRLFVASFTLVLPF 105 (218)
Q Consensus 74 s~~~pd~lmELlll~~alr~~ga~~ItlViPY 105 (218)
.+...|.+-++.-.++.....+....+++-||
T Consensus 20 ~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~ 51 (80)
T smart00166 20 RFPSSDTLRTVYEFVSAALTDGNDPFTLNSPF 51 (80)
T ss_pred EeCCCCcHHHHHHHHHHcccCCCCCEEEEeCC
Confidence 44455777777777777766666778887765
No 134
>PF06300 Tsp45I: Tsp45I type II restriction enzyme; InterPro: IPR010443 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction endonucleases such as Tsp45I, which recognises the DNA sequence 5' GTSAC, cleaving prior to G-1 [].
Probab=34.85 E-value=3.5 Score=36.40 Aligned_cols=53 Identities=9% Similarity=0.045 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHhcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEE
Q 027833 79 GVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLV 144 (218)
Q Consensus 79 d~lmELlll~~alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vi 144 (218)
-.+++.||-.+ ..-+==||+||-+.|+...++-|-|.+.+|..|. .+|+|.|+
T Consensus 54 ~~li~~lL~~~--------lfPikdsYvayLkrdksAlernP~Ti~ri~g~l~-----emGl~~i~ 106 (261)
T PF06300_consen 54 TKLIKSLLNLD--------LFPIKDSYVAYLKRDKSALERNPETINRICGRLY-----EMGLDKIY 106 (261)
T ss_pred HHHHHHHHhcc--------cCccCcchHHHHHhhHHHHhcCcHHHHHHHHHHH-----HHhHHHHH
Confidence 45666666422 2222248999999999999999999999999998 79976653
No 135
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=34.56 E-value=1.3e+02 Score=26.40 Aligned_cols=77 Identities=10% Similarity=0.041 Sum_probs=50.7
Q ss_pred EEEEecCCcHHHHHHHHHHcCCCceeeeeEeecC-------CCCCeeEEEecCCCCCCeEEEEEec---CCchhHHHHHH
Q 027833 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFA-------DGWPNLYINSAHDIRGQHVAFLASF---SSPGVIFEQIS 86 (218)
Q Consensus 17 ~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~Fp-------DG~~E~~v~i~~~vrG~dV~Iiqs~---~~pd~lmELll 86 (218)
+.|+.|+.=..+++.+.... .+++.+ .-.|| .| ++.+ ..+.|+.|++++.- +.+..+-+.-.
T Consensus 2 i~iI~GSGl~~~~~~~~~~~-~ipY~~--ip~fp~~tv~gH~g--~l~~---G~l~g~~V~~l~Gr~H~yeg~~~~~v~~ 73 (237)
T TIGR01698 2 MAIVLGSGWGGAVEALGEPV-ELPYAE--IPGFPAPTVSGHAG--ELIR---VRIGDGPVLVLGGRTHAYEGGDARAVVH 73 (237)
T ss_pred EEEEEeCCHHHHHHhhcCce-Eeeccc--CCCCCCCcccCccc--eEEE---EEECCEEEEEEcCCCcccCCCcHHHhHH
Confidence 56788888777777775554 455543 34555 34 3322 24567899988832 23366667788
Q ss_pred HHHhcccCCCCeEEE
Q 027833 87 VIYALPRLFVASFTL 101 (218)
Q Consensus 87 l~~alr~~ga~~Itl 101 (218)
-+.+++..|++++.+
T Consensus 74 ~i~al~~lGv~~ii~ 88 (237)
T TIGR01698 74 PVRTARATGAETLIL 88 (237)
T ss_pred HHHHHHHcCCCEEEE
Confidence 899999999998765
No 136
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=33.43 E-value=1.1e+02 Score=23.53 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=36.6
Q ss_pred cHHHhhhhhcCCCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCC
Q 027833 3 DKREIKAKKSQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADG 52 (218)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG 52 (218)
++|-+|..+.++.+++|++.+--.++-++|-.+- .+..+.+..|+..
T Consensus 24 ~k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyYA---kLs~ipV~~y~Gt 70 (100)
T COG1911 24 SKRTIKSLKLGKAKLIIIASNCPKELKEDIEYYA---KLSDIPVYVYEGT 70 (100)
T ss_pred hHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHH---HHcCCcEEEecCC
Confidence 6899999999999999999888888888885553 2345556677776
No 137
>cd06909 M14_ASPA Aspartoacylase (ASPA) belongs to the Succinylglutamate desuccinylase/aspartoacylase subfamily of the M14 family of metallocarboxypeptidases. ASPA (also known as aminoacylase 2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=33.34 E-value=3.1e+02 Score=24.56 Aligned_cols=45 Identities=9% Similarity=-0.186 Sum_probs=21.1
Q ss_pred EEEeCCchh-hhccccccccccccccHHHHHHHHhhCCCCCCEEEEeCC
Q 027833 144 VIYDIHALQ-ERFYFSDHVLPLFETGIPLLKQRLHQLPDANNLLHFRMM 191 (218)
Q Consensus 144 itvDlHs~~-~~~~F~~~~~~l~~~~~~~l~~~l~~~~~~~~~vvvsPD 191 (218)
+.+|+|+.. ..+.+-+-...- .....++.|+.... ....++...+
T Consensus 97 ~~iDLHstts~~g~~liv~~~~--~~~~~la~~l~~~~-~~~~il~~~~ 142 (282)
T cd06909 97 FVIDLHNTTSNMGLTLILYGSR--PFDLQLAAYLQSKL-GLPVYLIEHD 142 (282)
T ss_pred EEEECCCCCCcCCCeEEEeCCC--cHHHHHHHHHHhcc-CCcEEEEeCC
Confidence 889999952 222211111111 22345778876631 2223445444
No 138
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.07 E-value=4.1e+02 Score=24.80 Aligned_cols=137 Identities=12% Similarity=0.028 Sum_probs=69.5
Q ss_pred HHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCC--chhHHHHHHHHHhcccCCCCeEEEEeecC
Q 027833 29 ARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSS--PGVIFEQISVIYALPRLFVASFTLVLPFF 106 (218)
Q Consensus 29 a~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~--pd~lmELlll~~alr~~ga~~ItlViPYl 106 (218)
|-.++..+ |.+...-.+..|..- +.+.++-... ..+.+|....+ |++.+ .|++....++|++|+=
T Consensus 240 A~a~a~~~-G~~~~~~~L~~f~~~--~~R~e~~~~~--~gv~~idDs~~tn~~a~~------~al~~~~~~~ii~IlG-- 306 (401)
T PRK03815 240 ALAVYKIL-FDELDYERLNAFKIG--KHKLEEFRDK--QGRLWVDDSKATNVDATL------QALKRYKDKKIHLILG-- 306 (401)
T ss_pred HHHHHHHh-CcHHHHHHHHhCCCC--CceEEEEEEE--CCEEEEECCCCCCHHHHH------HHHHhCCCCCEEEEEC--
Confidence 34456666 522222235677665 5555544332 34777766533 24333 3333333357778776
Q ss_pred CCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccc---cccccccccccHHHHHHHHhhCCCCC
Q 027833 107 PTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYF---SDHVLPLFETGIPLLKQRLHQLPDAN 183 (218)
Q Consensus 107 ~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F---~~~~~~l~~~~~~~l~~~l~~~~~~~ 183 (218)
| .|+ ++... -+++.+. ..+. .|+++--+...+...+ +.++... .-...+.+++.+....+
T Consensus 307 G---~~k----~~~~~--~l~~~~~-----~~~~-~v~~~G~~~~~~~~~~~~~~~~~~~~--~~~e~av~~~~~~~~~g 369 (401)
T PRK03815 307 G---DDK----GVDLT--PLFEFMK-----NLNI-ELYAIGSNTEKIQALAKEFNIKAFVC--EFLEKAVEEIKKVLKQN 369 (401)
T ss_pred C---CCC----CCCHH--HHHHHHH-----hhCc-EEEEECCCHHHHHHHHhcCCCeEEEe--CCHHHHHHHHHHhCCCC
Confidence 2 111 23332 5666665 4554 5889887765444332 1122111 12333444444433467
Q ss_pred CEEEEeCCcccH
Q 027833 184 NLLHFRMMEPGS 195 (218)
Q Consensus 184 ~~vvvsPD~Ga~ 195 (218)
+.|++||-.-..
T Consensus 370 dvVLlSPa~aSf 381 (401)
T PRK03815 370 EVALLSPAAASL 381 (401)
T ss_pred CEEEeChhhhcc
Confidence 799999976553
No 139
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=32.21 E-value=87 Score=27.76 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=46.3
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecC-------CCCCeeEEEecCCCCCCeEEEEEecCC---chhHH
Q 027833 13 QKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFA-------DGWPNLYINSAHDIRGQHVAFLASFSS---PGVIF 82 (218)
Q Consensus 13 ~~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~Fp-------DG~~E~~v~i~~~vrG~dV~Iiqs~~~---pd~lm 82 (218)
-+.++.|+.|+.=-.+++.+.... .+++.+ +-.|| .| .++.- .+.|++|+++++-.+ +...-
T Consensus 20 ~~~~i~iI~GsGl~~~~~~~~~~~-~~~y~~--ip~f~~~~v~gh~~--~~~~G---~l~g~~Vv~~~g~~H~yeG~~~~ 91 (272)
T PRK08202 20 FKPEIGLILGSGLGALADEIENAV-VIPYAD--IPGFPVSTVEGHAG--ELVLG---RLGGKPVLAMQGRFHYYEGYSME 91 (272)
T ss_pred CCCCEEEEeCCchhHHHHHhcCcE-EEeccc--CCCCCCCCCcCCCc--eEEEE---EECCEEEEEEccCCcccCCCCHH
Confidence 346899999999777765553333 233332 23344 35 44432 345899999986542 11111
Q ss_pred HHHHHHHhcccCCCCeEEE
Q 027833 83 EQISVIYALPRLFVASFTL 101 (218)
Q Consensus 83 ELlll~~alr~~ga~~Itl 101 (218)
+.-.-+.+++..|++.|..
T Consensus 92 ~~~a~i~~l~~lGv~~II~ 110 (272)
T PRK08202 92 AVTFPVRVMKALGVETLIV 110 (272)
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 2234456777888877654
No 140
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=32.16 E-value=54 Score=27.16 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=27.1
Q ss_pred CCCCCeEEEEEecCCchhHHHHHHHHHhcccCCCCeEEEE
Q 027833 63 DIRGQHVAFLASFSSPGVIFEQISVIYALPRLFVASFTLV 102 (218)
Q Consensus 63 ~vrG~dV~Iiqs~~~pd~lmELlll~~alr~~ga~~ItlV 102 (218)
.+.|++|+||.++....+-+ --++.+|+++||++|.++
T Consensus 149 ~~~~~~vllvDDV~TTGaTl--~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 149 SFQGRNIVLVDDVVTTGATL--HEIARLLLELGAASVQVW 186 (190)
T ss_pred CCCCCEEEEEeeeeccHHHH--HHHHHHHHHcCCCEEEEE
Confidence 47899999998876663222 224566778999998765
No 141
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=31.14 E-value=2.5e+02 Score=22.51 Aligned_cols=63 Identities=11% Similarity=-0.024 Sum_probs=42.5
Q ss_pred CCCCCEEEEEeCCchhhhccccccccccccccHHHHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCcccc
Q 027833 137 RGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRWCVP 210 (218)
Q Consensus 137 ~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~~~~ 210 (218)
..|+|+++.+|-.. ... ++ .+ .....+++.+++. ..+.++++-..-+.+-+-.+|..||+-+-
T Consensus 49 ~~Gad~v~~~~~~~--~~~-~~--~~----~~a~al~~~i~~~--~p~~Vl~~~t~~g~~la~rlAa~L~~~~v 111 (168)
T cd01715 49 AYGADKVLVAEDPA--LAH-YL--AE----PYAPALVALAKKE--KPSHILAGATSFGKDLAPRVAAKLDVGLI 111 (168)
T ss_pred hcCCCEEEEecChh--hcc-cC--hH----HHHHHHHHHHHhc--CCCEEEECCCccccchHHHHHHHhCCCce
Confidence 58999999997332 222 21 12 2245677777663 35677777777788999999999998654
No 142
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=30.96 E-value=95 Score=25.99 Aligned_cols=36 Identities=8% Similarity=-0.048 Sum_probs=26.2
Q ss_pred HHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCc
Q 027833 171 LLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRW 207 (218)
Q Consensus 171 ~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~ 207 (218)
.+++.+... ..+-.+|++|+.||...|..+|..|+.
T Consensus 53 ~la~~i~~~-~~~~d~Ivgi~~gG~~~A~~la~~L~~ 88 (202)
T PRK00455 53 FLAEAIKDS-GIEFDVVAGPATGGIPLAAAVARALDL 88 (202)
T ss_pred HHHHHHHhc-CCCCCEEEecccCcHHHHHHHHHHhCC
Confidence 344444432 113458999999999999999999984
No 143
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=30.88 E-value=2.3e+02 Score=26.43 Aligned_cols=65 Identities=9% Similarity=-0.068 Sum_probs=42.9
Q ss_pred CCeEEEEEecCCchhHHHHHHHHHhcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEE
Q 027833 66 GQHVAFLASFSSPGVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVI 145 (218)
Q Consensus 66 G~dV~Iiqs~~~pd~lmELlll~~alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vit 145 (218)
+.++.||.....-....|. ++.|+..|. ++.++=+-+. -|+..+.+.++++ ++++|+|
T Consensus 273 ~ad~~iv~~Gs~~~~a~eA---v~~Lr~~G~-~v~~l~~~~l-----------~Pfp~~~i~~~~~-------~~k~Viv 330 (376)
T PRK08659 273 DAEVVVVAYGSVARSARRA---VKEAREEGI-KVGLFRLITV-----------WPFPEEAIRELAK-------KVKAIVV 330 (376)
T ss_pred CCCEEEEEeCccHHHHHHH---HHHHHhcCC-ceEEEEeCee-----------cCCCHHHHHHHHh-------cCCEEEE
Confidence 4678888655433554444 344566665 5766643222 2788888999997 6789999
Q ss_pred EeCCchh
Q 027833 146 YDIHALQ 152 (218)
Q Consensus 146 vDlHs~~ 152 (218)
+|-|..+
T Consensus 331 vEe~~g~ 337 (376)
T PRK08659 331 PEMNLGQ 337 (376)
T ss_pred EeCCHHH
Confidence 9999533
No 144
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=30.18 E-value=2e+02 Score=22.49 Aligned_cols=63 Identities=10% Similarity=0.151 Sum_probs=40.5
Q ss_pred CEEEEEeCCchhhhccccccccccccccHHHHHHHHhhCCCCCC-EEEEeCCcccHHHHHHHHHHcCc-ccceeeeeccC
Q 027833 141 TSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQLPDANN-LLHFRMMEPGSDSTRCWIISLRW-CVPRFVKVIRG 218 (218)
Q Consensus 141 d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~~l~~~~~~~~-~vvvsPD~Ga~~ra~~~a~~l~~-~~~~~~~~~~~ 218 (218)
++++++|.+...- .||..+ .|.|.+.-.+ ..+ .++.-=|-. ....+++..+. ++|.|+-|.+|
T Consensus 14 ~klVVVdF~a~WC-----~pCk~m----dp~l~ela~~---~~~~~~f~kVDVD---ev~dva~~y~I~amPtfvffkng 78 (114)
T cd02986 14 EKVLVLRFGRDED-----AVCLQL----DDILSKTSHD---LSKMASIYLVDVD---KVPVYTQYFDISYIPSTIFFFNG 78 (114)
T ss_pred CCEEEEEEeCCCC-----hhHHHH----HHHHHHHHHH---ccCceEEEEEecc---ccHHHHHhcCceeCcEEEEEECC
Confidence 8999999887433 577655 4555554443 344 444433432 55678999996 69999966555
No 145
>PRK10628 LigB family dioxygenase; Provisional
Probab=29.86 E-value=24 Score=31.22 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=13.8
Q ss_pred ecCCcHHHHHHHHHHc
Q 027833 21 YCVECEELARKVAAQS 36 (218)
Q Consensus 21 ~g~~~~~La~~Ia~~l 36 (218)
..+++++||++|++.|
T Consensus 65 pa~G~p~LA~~i~~ll 80 (246)
T PRK10628 65 PAPGSPALAQRLVELL 80 (246)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 4567889999999998
No 146
>COG3608 Predicted deacylase [General function prediction only]
Probab=29.53 E-value=1.7e+02 Score=27.22 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=27.0
Q ss_pred CCCeEEEEEecCCc--hhHHHHHHHHHhcccCCCCeEEEEeecCCC
Q 027833 65 RGQHVAFLASFSSP--GVIFEQISVIYALPRLFVASFTLVLPFFPT 108 (218)
Q Consensus 65 rG~dV~Iiqs~~~p--d~lmELlll~~alr~~ga~~ItlViPYl~Y 108 (218)
.|+.++|....+.+ .-..-+..++++|..+..+--+.++|...|
T Consensus 47 ~gp~~~l~ag~HGdEl~G~~al~~Li~~L~~a~i~GtV~iVP~aN~ 92 (331)
T COG3608 47 PGPSVLLQAGVHGDELPGVIALRRLIPALDPADISGTVIIVPIANP 92 (331)
T ss_pred CCCEEEEEecccccccchHHHHHHHHHhcCHhhcCceEEEEeccCH
Confidence 36788888888766 344445555555555555444666777654
No 147
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=28.91 E-value=2.1e+02 Score=24.61 Aligned_cols=88 Identities=10% Similarity=0.184 Sum_probs=48.4
Q ss_pred hhhcCCCcEEEEec-C-CcHHHHHHHHHHcCC--------CceeeeeEeecCCCCC--eeEEEe---cCCCCCCeEEEEE
Q 027833 9 AKKSQKKQVHLFYC-V-ECEELARKVAAQSDL--------ITLQSINWRNFADGWP--NLYINS---AHDIRGQHVAFLA 73 (218)
Q Consensus 9 ~~~~~~~~~~i~~g-~-~~~~La~~Ia~~l~~--------~~~~~~~~~~FpDG~~--E~~v~i---~~~vrG~dV~Iiq 73 (218)
|+..+.++++++.- . +...+|+ +.++|.+ ..+..+..+.|-|+.- ++.+-- ..++.||+|+|+.
T Consensus 54 ~~~~g~~~i~~lcVlkG~ykF~ad-Lve~l~n~~s~~~~pmtvDFIR~kSY~n~~stg~iqiig~d~l~~ltgK~VliVe 132 (216)
T KOG3367|consen 54 MKEIGNKPIIFLCVLKGGYKFFAD-LVERLKNRNSDRPLPMTVDFIRAKSYCNDQSTGDIQIIGGDDLSTLTGKNVLIVE 132 (216)
T ss_pred hhccCCCceEEEEEecchhHHHHH-HHHHHhhcccCCCcceeeeeeehhhhcCCcccCCceeecCCCHHHhcCCcEEEEE
Confidence 44455666554332 2 2334444 4444323 2245667777777511 333322 3578899999999
Q ss_pred ecCCchhHHHHHHHHHhcccCCCCeE
Q 027833 74 SFSSPGVIFEQISVIYALPRLFVASF 99 (218)
Q Consensus 74 s~~~pd~lmELlll~~alr~~ga~~I 99 (218)
.+.+-...|.-| ++.++..+++.+
T Consensus 133 DIvdTGrTl~~L--ls~~~~~k~~~v 156 (216)
T KOG3367|consen 133 DIVDTGRTLSTL--LSHMKAYKPSMV 156 (216)
T ss_pred eeccccchHHHH--HHHHHhcCccce
Confidence 987765555433 345556666554
No 148
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=28.90 E-value=88 Score=24.95 Aligned_cols=66 Identities=12% Similarity=0.028 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHhcccCCCCeEEEEee-------cCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCch
Q 027833 79 GVIFEQISVIYALPRLFVASFTLVLP-------FFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHAL 151 (218)
Q Consensus 79 d~lmELlll~~alr~~ga~~ItlViP-------Yl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~ 151 (218)
...=+|-++++.|++.|++-..+++| |.+++++.|. . .-+-+..+++ +.|+ + ++|+.+.
T Consensus 33 pEy~Dl~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~-----~-~y~kI~~~~~-----~~gf-~--v~D~s~~ 98 (130)
T PF04914_consen 33 PEYDDLQLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQ-----E-YYKKIKYQLK-----SQGF-N--VADFSDD 98 (130)
T ss_dssp THHHHHHHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHH-----H-HHHHHHHHHH-----TTT-----EEE-TTG
T ss_pred ccHHHHHHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHH-----H-HHHHHHHHHH-----HCCC-E--EEecccC
Confidence 44556778889999999988888888 4556666554 2 3455667777 7887 3 5788887
Q ss_pred hhhcccc
Q 027833 152 QERFYFS 158 (218)
Q Consensus 152 ~~~~~F~ 158 (218)
+-..||=
T Consensus 99 ~y~~yfm 105 (130)
T PF04914_consen 99 EYEPYFM 105 (130)
T ss_dssp TTSTTSB
T ss_pred CCCCcee
Confidence 7766664
No 149
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=28.71 E-value=2.3e+02 Score=20.98 Aligned_cols=78 Identities=8% Similarity=0.034 Sum_probs=45.5
Q ss_pred cchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHHHHHHhhCCCCCCEEEEeCCcccHHHHH
Q 027833 120 VATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQLPDANNLLHFRMMEPGSDSTR 199 (218)
Q Consensus 120 ~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~ 199 (218)
.++.+.+.+.+. ..+-+..++++.+++.- .+|..+ .|.+.+...+. .+..++.=|....
T Consensus 8 ~i~~~~f~~~i~-----~~~~~~~vvv~F~a~~c-----~~C~~l----~~~l~~la~~~---~~v~f~~vd~~~~---- 66 (113)
T cd02957 8 EISSKEFLEEVT-----KASKGTRVVVHFYEPGF-----PRCKIL----DSHLEELAAKY---PETKFVKINAEKA---- 66 (113)
T ss_pred EEcHHHHHHHHH-----ccCCCCEEEEEEeCCCC-----CcHHHH----HHHHHHHHHHC---CCcEEEEEEchhh----
Confidence 456666777765 33335788888887654 455555 44555444432 2333444443322
Q ss_pred HHHHHcCc-ccceeeeeccC
Q 027833 200 CWIISLRW-CVPRFVKVIRG 218 (218)
Q Consensus 200 ~~a~~l~~-~~~~~~~~~~~ 218 (218)
.++..++. .+|.++.|-.|
T Consensus 67 ~l~~~~~i~~~Pt~~~f~~G 86 (113)
T cd02957 67 FLVNYLDIKVLPTLLVYKNG 86 (113)
T ss_pred HHHHhcCCCcCCEEEEEECC
Confidence 66777776 89988777655
No 150
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.08 E-value=4.5e+02 Score=24.27 Aligned_cols=135 Identities=11% Similarity=0.018 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCCceeeee--EeecCCCCCeeEEEecCCCCCCeEEEEEecC-CchhHHHHHHHHHhcccCCCCeEEEEe
Q 027833 27 ELARKVAAQSDLITLQSIN--WRNFADGWPNLYINSAHDIRGQHVAFLASFS-SPGVIFEQISVIYALPRLFVASFTLVL 103 (218)
Q Consensus 27 ~La~~Ia~~l~~~~~~~~~--~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~-~pd~lmELlll~~alr~~ga~~ItlVi 103 (218)
-.|-.++..+ +++...+. +..|..- +-+.++-....| ..+|..+.. .|+.+.+ |++.. .+++++|+
T Consensus 281 ~aAia~~~~l-gi~~~~i~~~L~~f~~~--~~R~e~~~~~~g-~~vi~D~~a~N~~s~~~------al~~~-~~~ii~I~ 349 (447)
T PRK02472 281 LAAIAAAKLL-GVSNEAIREVLSTFSGV--KHRLQYVGTIDG-RKFYNDSKATNILATQK------ALSGF-NQPVVLLA 349 (447)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHhCCCC--CCcceEEEEECC-eEEEECCCCCCHHHHHH------HHHhC-CCCEEEEE
Confidence 3455567777 67654443 4566432 223332222222 234444422 2355443 33332 24677775
Q ss_pred ecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccc---ccccccccccHHHHHHHHhhCC
Q 027833 104 PFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFS---DHVLPLFETGIPLLKQRLHQLP 180 (218)
Q Consensus 104 PYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~---~~~~~l~~~~~~~l~~~l~~~~ 180 (218)
= ++.|. + .-.-+++.|. . ++.|+++-.+...+...+. .++... .......+.+.+..
T Consensus 350 g--~~~~~-~--------~~~~l~~~l~-----~--~~~v~~~G~~~~~l~~~~~~~~~~~~~~--~~~~~a~~~~~~~~ 409 (447)
T PRK02472 350 G--GLDRG-N--------EFDELVPYLK-----N--VKAMVVFGETAEKLARAAEKAGITVVEA--DNVEDAVPKAYELS 409 (447)
T ss_pred C--CCCCC-C--------CHHHHHHHHh-----c--cCEEEEECCCHHHHHHHHHhCCCceEEc--CCHHHHHHHHHHhC
Confidence 4 22221 1 2245666676 3 7999999877655544331 122111 12333344443322
Q ss_pred CCCCEEEEeCCc
Q 027833 181 DANNLLHFRMME 192 (218)
Q Consensus 181 ~~~~~vvvsPD~ 192 (218)
..++.|+++|-.
T Consensus 410 ~~~d~VLls~a~ 421 (447)
T PRK02472 410 EPGDVILLSPAC 421 (447)
T ss_pred CCCCEEEeCccc
Confidence 456789999953
No 151
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=28.06 E-value=5e+02 Score=24.24 Aligned_cols=117 Identities=10% Similarity=-0.021 Sum_probs=68.2
Q ss_pred CCCCeEEEEEecCCc---hhHHHHHHHHHhcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCC--C
Q 027833 64 IRGQHVAFLASFSSP---GVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSR--G 138 (218)
Q Consensus 64 vrG~dV~Iiqs~~~p---d~lmELlll~~alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~--~ 138 (218)
.|+-.++++.-.... +.-.|||-.+..|...+ ..+++++. |...+..-.+..|. . .
T Consensus 24 ~~~m~i~V~~E~~~g~l~~~slEll~~Ar~La~~~-~~v~avv~-------------g~~~~~~~~a~~l~-----~~~~ 84 (356)
T PLN00022 24 SRQISTLVVAEHEGGSVKPQSLSAVAAAKSLLGES-SPISLLLA-------------GSGPSLQQAASHAA-----SSHP 84 (356)
T ss_pred hcCCeEEEEEeCcCCEeCHHHHHHHHHHHHhcCCC-CceEEEEE-------------cCCcchhhHHHHHh-----hccC
Confidence 344455555443322 66778888666653322 24666542 22222233444444 4 4
Q ss_pred CCCEEEEEeCCchhhhccccccccccccccHHHHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCcccc
Q 027833 139 GPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRWCVP 210 (218)
Q Consensus 139 G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~~~~ 210 (218)
|+|+|+++|- +....| . .+.+ ...+++.+.+. ..+.++++...-+.+-|-.+|-.|++.+-
T Consensus 85 Gad~V~~~~~--~~l~~y-~--~e~~----a~al~~li~~~--~P~~vL~~~T~~GrdlApRlAarL~~gl~ 145 (356)
T PLN00022 85 SVSEVLVADS--DKLTHP-L--AEPW----AKLVVLAQQKG--GYSHILAASTSFGKNVLPRAAALLDVSPI 145 (356)
T ss_pred CCCEEEEecC--chhccc-C--hHHH----HHHHHHHHHhc--CCCEEEECCCCchhHHHHHHHHHhCCCee
Confidence 9999999863 223222 1 1222 34566666653 35678888888899999999999998654
No 152
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=27.99 E-value=5e+02 Score=24.90 Aligned_cols=95 Identities=16% Similarity=0.101 Sum_probs=50.2
Q ss_pred eEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHHHHHHh
Q 027833 98 SFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLH 177 (218)
Q Consensus 98 ~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~~l~ 177 (218)
||.+|=|-.+-...+.. ..=.|+....+|-.|. ..|+..|-.+|..... + + ...+.+.+.
T Consensus 1 ~illi~P~~~~~~~~~~-~~~pPlgl~~lAa~L~-----~~G~~~V~iiD~~~~~-----------~--~-~~~~~~~l~ 60 (497)
T TIGR02026 1 RILILNPNYHAGGAEIA-GQWPPLWVAYIGGALL-----DAGYHDVTFLDAMTGP-----------L--T-DEKLVERLR 60 (497)
T ss_pred CeEEEcCCCCccccccC-CCcCCHHHHHHHHHHH-----hcCCcceEEecccccC-----------C--C-HHHHHHHHH
Confidence 46777774321111111 1236999999999997 6886567777865321 1 1 122344443
Q ss_pred hCCCCCCEEEEeCCcccHHHHHHHHHHcCcccceeee
Q 027833 178 QLPDANNLLHFRMMEPGSDSTRCWIISLRWCVPRFVK 214 (218)
Q Consensus 178 ~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~~~~~~~~ 214 (218)
. ...+.|.++--.....++..+++.+.--.|.-.+
T Consensus 61 ~--~~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~i 95 (497)
T TIGR02026 61 A--HCPDLVLITAITPAIYIACETLKFARERLPNAII 95 (497)
T ss_pred h--cCcCEEEEecCcccHHHHHHHHHHHHHHCCCCEE
Confidence 3 1344555555555555555555555444444333
No 153
>TIGR01699 XAPA xanthosine phosphorylase. (TIGR01698, TIGR01700).
Probab=27.76 E-value=1.1e+02 Score=26.95 Aligned_cols=105 Identities=13% Similarity=0.127 Sum_probs=65.4
Q ss_pred EEEEecCCcHHHHHHHHHHcCCCceeeeeEeecC-------CCCCeeEEEecCCCCCCeEEEEEecCC---chhHHHHHH
Q 027833 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFA-------DGWPNLYINSAHDIRGQHVAFLASFSS---PGVIFEQIS 86 (218)
Q Consensus 17 ~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~Fp-------DG~~E~~v~i~~~vrG~dV~Iiqs~~~---pd~lmELll 86 (218)
+.|+-|+.=..+++.+.... -+++ .++..|| .| +++.- .+.|++|++++.... +-..-++..
T Consensus 2 ~~ii~Gsgl~~~~~~~~~~~-~i~y--~~ip~~p~~~v~gh~g--~l~~G---~l~g~~Vv~~~Gr~h~y~g~~~~~~~~ 73 (248)
T TIGR01699 2 VAFILGSGLGALADQIENAV-AISY--EKLPGFPVSTVHGHAG--ELVLG---HLQGVPVVCMKGRGHFYEGRGMTIMTD 73 (248)
T ss_pred EEEEeeCcHHHHHHhccCCE-EEEC--CCCCCCCCCcccCCcc--eEEEE---EECCEEEEEEeCCCcccCCcchhhhcc
Confidence 46777888777777774443 2333 3456777 46 55443 456889988654322 244445555
Q ss_pred HHHhcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhc
Q 027833 87 VIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSN 132 (218)
Q Consensus 87 l~~alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~ 132 (218)
-+.+++..|++.|...= .-.--+..+++|+.+-.+...++...
T Consensus 74 ~i~~l~~lGv~~iI~t~---aaG~l~~~l~~Gdlvi~~d~i~~t~~ 116 (248)
T TIGR01699 74 AIRTFKLLGCELLFCTN---AAGSLRPEVGAGSLVALKDHINTMPG 116 (248)
T ss_pred hHHHHHHcCCCEEEEec---ceeccCCCCCCCCEECHHHHhhcCCC
Confidence 79999999999876531 11223345678888888877777553
No 154
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=27.75 E-value=3.6e+02 Score=22.54 Aligned_cols=74 Identities=14% Similarity=0.166 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHcCCCceeeeeE--eecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcccCCCCeEEE
Q 027833 25 CEELARKVAAQSDLITLQSINW--RNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFVASFTL 101 (218)
Q Consensus 25 ~~~La~~Ia~~l~~~~~~~~~~--~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~alr~~ga~~Itl 101 (218)
.-.||..+|..+ |+++..+.- +.+..+ .. ....-.+|++|+||..+-.. ..+.+.+ +.++++|+ .|+.
T Consensus 84 GiplA~~vA~~l-~~p~v~vRK~~k~~g~~--~~--~~g~~~~g~rVlIVDDVitTGgS~~~~i---~~l~~~Ga-~V~~ 154 (187)
T PRK13810 84 GVPLATAVSLET-GLPLLIVRKSVKDYGTG--SR--FVGDLKPEDRIVMLEDVTTSGGSVREAI---EVVREAGA-YIKY 154 (187)
T ss_pred hHHHHHHHHHHh-CCCEEEEecCCCccCCC--ce--EEccCCCcCEEEEEEeccCCChHHHHHH---HHHHHCCC-EEEE
Confidence 457899999999 888754432 333323 33 22333578999999887655 5555544 45556676 5555
Q ss_pred EeecCC
Q 027833 102 VLPFFP 107 (218)
Q Consensus 102 ViPYl~ 107 (218)
++-.+-
T Consensus 155 v~vlvd 160 (187)
T PRK13810 155 VITVVD 160 (187)
T ss_pred EEEEEE
Confidence 555554
No 155
>PRK09271 flavodoxin; Provisional
Probab=27.33 E-value=3.2e+02 Score=21.75 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=35.5
Q ss_pred EEEEecCC---cHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEe-cC----CchhHHHHHHHH
Q 027833 17 VHLFYCVE---CEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLAS-FS----SPGVIFEQISVI 88 (218)
Q Consensus 17 ~~i~~g~~---~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs-~~----~pd~lmELlll~ 88 (218)
+.|+.+|. .+.+|+.|++.| .-.-..+++...++. ++. .+..++...+++++.+ +. .|+.+..++--+
T Consensus 3 v~IvY~S~tGnTe~~A~~ia~~l-~~~g~~v~~~~~~~~--~~~-~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l 78 (160)
T PRK09271 3 ILLAYASLSGNTREVAREIEERC-EEAGHEVDWVETDVQ--TLA-EYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAEL 78 (160)
T ss_pred EEEEEEcCCchHHHHHHHHHHHH-HhCCCeeEEEecccc--ccc-ccccCcccCCEEEEECcccCCCcCCHHHHHHHHHH
Confidence 44555544 356899998888 433334445555544 311 1122333457777777 42 234555554333
Q ss_pred H
Q 027833 89 Y 89 (218)
Q Consensus 89 ~ 89 (218)
.
T Consensus 79 ~ 79 (160)
T PRK09271 79 A 79 (160)
T ss_pred H
Confidence 3
No 156
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=26.51 E-value=1.8e+02 Score=23.39 Aligned_cols=84 Identities=11% Similarity=-0.062 Sum_probs=44.4
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCCce----eeeeEeecCCCCCeeEEE-------------ecCCCCCCeEEEEEecC
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDLITL----QSINWRNFADGWPNLYIN-------------SAHDIRGQHVAFLASFS 76 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~~~~----~~~~~~~FpDG~~E~~v~-------------i~~~vrG~dV~Iiqs~~ 76 (218)
.+.+.+++.-+|..+|..++..| .... ......-+.++..+..-. ....++-.|++|+-|.+
T Consensus 33 ~~~I~i~G~G~S~~~A~~~~~~l-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~I~iS~S 111 (177)
T cd05006 33 GGKILICGNGGSAADAQHFAAEL-VKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEALGQPGDVLIGISTS 111 (177)
T ss_pred CCEEEEEeCcHHHHHHHHHHHHH-hchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 45577766666777787777766 2211 112222233110010000 01235557999988886
Q ss_pred Cc-hhHHHHHHHHHhcccCCCCeEEE
Q 027833 77 SP-GVIFEQISVIYALPRLFVASFTL 101 (218)
Q Consensus 77 ~p-d~lmELlll~~alr~~ga~~Itl 101 (218)
.. .++++ ++..+|+.|++.|.+
T Consensus 112 G~t~~~i~---~~~~ak~~Ga~vI~I 134 (177)
T cd05006 112 GNSPNVLK---ALEAAKERGMKTIAL 134 (177)
T ss_pred CCCHHHHH---HHHHHHHCCCEEEEE
Confidence 55 55544 555667888766554
No 157
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=26.12 E-value=91 Score=26.65 Aligned_cols=27 Identities=7% Similarity=-0.137 Sum_probs=23.8
Q ss_pred CCCEEEEeCCcccHHHHHHHHHHcCcc
Q 027833 182 ANNLLHFRMMEPGSDSTRCWIISLRWC 208 (218)
Q Consensus 182 ~~~~vvvsPD~Ga~~ra~~~a~~l~~~ 208 (218)
.+..+|++|+.||..+|..+|..+|.=
T Consensus 66 ~~~d~IvG~~~~Gi~~A~~vA~~l~~p 92 (206)
T PRK13809 66 FNSSLLCGVPYTALTLATSISLKYNIP 92 (206)
T ss_pred CCCCEEEEecCccHHHHHHHHHHhCCC
Confidence 456899999999999999999999853
No 158
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=25.78 E-value=1.7e+02 Score=28.30 Aligned_cols=68 Identities=18% Similarity=0.348 Sum_probs=46.9
Q ss_pred EEEEecCCcHHHHHHHHHHcCCCceeeeeEeec--CCCCCe-------eEEEecCCCCCCeEEEEEecCCc---hhHHHH
Q 027833 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNF--ADGWPN-------LYINSAHDIRGQHVAFLASFSSP---GVIFEQ 84 (218)
Q Consensus 17 ~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~F--pDG~~E-------~~v~i~~~vrG~dV~Iiqs~~~p---d~lmEL 84 (218)
++=+||+.+.+.+++|...+...+-..+....| .|| | +|.+-|.|--|+||+=+|.-..+ +.++++
T Consensus 21 IvRiSGp~a~~ia~~i~~~~~~~~~r~a~y~~i~d~~~--~~iDe~lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~ 98 (454)
T COG0486 21 IVRISGPDALEIAQKLFGGLKLPKPRTAHYGHIKDENG--EIIDEVLVLYFKAPNSFTGEDVVEIQCHGGPVVVNLILEL 98 (454)
T ss_pred EEEecCHhHHHHHHHHhCCCCCCCCcEEEEEEEEcCCC--cEeeeeeEEEEeCCCCcccccEEEEEcCCCHHHHHHHHHH
Confidence 334678888888888887541133344444444 457 7 45556899999999999888777 777777
Q ss_pred HH
Q 027833 85 IS 86 (218)
Q Consensus 85 ll 86 (218)
++
T Consensus 99 ~l 100 (454)
T COG0486 99 LL 100 (454)
T ss_pred HH
Confidence 66
No 159
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.12 E-value=44 Score=29.41 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.3
Q ss_pred HHHHhcccCCCCeEEEEeecCC
Q 027833 86 SVIYALPRLFVASFTLVLPFFP 107 (218)
Q Consensus 86 ll~~alr~~ga~~ItlViPYl~ 107 (218)
-.+++|+..|++||.++-||.-
T Consensus 108 Avv~aL~al~a~ri~vlTPY~~ 129 (238)
T COG3473 108 AVVEALNALGAQRISVLTPYID 129 (238)
T ss_pred HHHHHHHhhCcceEEEeccchh
Confidence 4678999999999999999974
No 160
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=24.99 E-value=4.5e+02 Score=24.22 Aligned_cols=136 Identities=11% Similarity=0.059 Sum_probs=65.6
Q ss_pred HHHHHHHHcCCCceeeee--EeecCCCCCeeEEEecCCCCCCeEEEEEe-cCC-chhHHHHHHHHHhcccCCCCeEEEEe
Q 027833 28 LARKVAAQSDLITLQSIN--WRNFADGWPNLYINSAHDIRGQHVAFLAS-FSS-PGVIFEQISVIYALPRLFVASFTLVL 103 (218)
Q Consensus 28 La~~Ia~~l~~~~~~~~~--~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs-~~~-pd~lmELlll~~alr~~ga~~ItlVi 103 (218)
.|-.++..+ |++...+. +..|..- +-+.++-.... .+.++.. ... |+...+. +++++ +++++|+
T Consensus 271 aAia~a~~l-gi~~~~i~~~L~~f~g~--~~R~e~v~~~~--g~~~idD~~atn~~a~~~a---l~~~~----~~ii~I~ 338 (433)
T TIGR01087 271 AAIALAKSL-GLNLEAILEALRSFKGL--PHRLEYVGQKN--GVHFYNDSKATNVHATLAA---LSAFD----NPVILIV 338 (433)
T ss_pred HHHHHHHHc-CCCHHHHHHHHHhCCCC--CCceEEEEEEC--CEEEEEcCCCCCHHHHHHH---HHhCC----CCEEEEE
Confidence 455567777 66654333 5677533 33333222222 3444444 332 3554443 34442 3577776
Q ss_pred ecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccc---ccccccccccHHHHHHHHhhCC
Q 027833 104 PFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFS---DHVLPLFETGIPLLKQRLHQLP 180 (218)
Q Consensus 104 PYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~---~~~~~l~~~~~~~l~~~l~~~~ 180 (218)
- + +||. ++ + .-+++.|. . ..+.++++..+...+...+. .++... .......+++.+..
T Consensus 339 G--g---~~~~---~d-~--~~~~~~l~-----~-~~~~v~~~G~~~~~l~~~~~~~~~~~~~~--~~~~~a~~~~~~~~ 399 (433)
T TIGR01087 339 G--G---DDKG---AD-F--SPLAPAAA-----G-KVKAVLAIGEDAAKIAPLLKEAGLSVYLV--ESLEEAVQAAREVA 399 (433)
T ss_pred c--C---CCCC---CC-H--HHHHHHHH-----h-hCCEEEEECCCHHHHHHHHHhCCCcEEEe--CCHHHHHHHHHHhc
Confidence 3 1 1221 11 1 22455665 2 25789988877665544442 112111 22334444444322
Q ss_pred CCCCEEEEeCCccc
Q 027833 181 DANNLLHFRMMEPG 194 (218)
Q Consensus 181 ~~~~~vvvsPD~Ga 194 (218)
..++.|+++|-.-.
T Consensus 400 ~~gdiVLlspa~as 413 (433)
T TIGR01087 400 SPGDVVLLSPACAS 413 (433)
T ss_pred CCCCEEEECccchh
Confidence 45678999997643
No 161
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=24.96 E-value=2.8e+02 Score=20.39 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=23.2
Q ss_pred CCCCCCeEEEEEecCCc--h----hHHHHHHHHHhccc
Q 027833 62 HDIRGQHVAFLASFSSP--G----VIFEQISVIYALPR 93 (218)
Q Consensus 62 ~~vrG~dV~Iiqs~~~p--d----~lmELlll~~alr~ 93 (218)
+.-+|+.++++..+... + ...+++.+++...-
T Consensus 45 ~gY~~q~vvi~DD~~~~~~~~~~~~~~~l~~l~s~~~~ 82 (107)
T PF00910_consen 45 DGYQGQPVVIIDDFGQDNDGYNYSDESELIRLISSNPF 82 (107)
T ss_pred hccCCCcEEEEeecCccccccchHHHHHHHHHHhcCCc
Confidence 55668999999998654 2 57788888776543
No 162
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=24.75 E-value=96 Score=29.62 Aligned_cols=27 Identities=0% Similarity=-0.244 Sum_probs=23.0
Q ss_pred CCCEEEEeCCcccHHHHHHHHHHcCccc
Q 027833 182 ANNLLHFRMMEPGSDSTRCWIISLRWCV 209 (218)
Q Consensus 182 ~~~~vvvsPD~Ga~~ra~~~a~~l~~~~ 209 (218)
..++||..||.| ..+|+.+|+.||.-+
T Consensus 275 ~~d~Vv~vPd~g-~~~A~~~A~~lgip~ 301 (445)
T PRK08525 275 KADFVVPVPDSG-VPAAIGYAQESGIPF 301 (445)
T ss_pred cCCeEEECCchH-HHHHHHHHHHhCCCc
Confidence 457999999976 899999999999744
No 163
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=24.56 E-value=5.5e+02 Score=23.49 Aligned_cols=102 Identities=10% Similarity=0.046 Sum_probs=64.7
Q ss_pred eEEEEEecCCchhHHHHHHHHHhcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEe
Q 027833 68 HVAFLASFSSPGVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYD 147 (218)
Q Consensus 68 dV~Iiqs~~~pd~lmELlll~~alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvD 147 (218)
.++++.- .++.+.||+-- +++.+. .+++++. + + .. +.-|. ..|+|+|+++|
T Consensus 6 ~i~V~~e--~~~~~~Ell~~---A~~l~~-~v~~vv~--g-----------~----~~-~~~l~-----~~Gad~V~~~~ 56 (312)
T PRK11916 6 SVWVFSD--NPERYAELFGG---AQQWGQ-QVYAIVQ--N-----------T----DQ-AQAVM-----PYGPKCIYVLE 56 (312)
T ss_pred eEEEEEe--cCCcHHHHHHH---HHHcCC-cEEEEEE--C-----------h----hH-HHHHH-----hcCCCEEEEeC
Confidence 4666655 45667788875 444443 3666542 1 1 11 33344 58999999986
Q ss_pred CCchhhhccccccccccccccHHHHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCcccc
Q 027833 148 IHALQERFYFSDHVLPLFETGIPLLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRWCVP 210 (218)
Q Consensus 148 lHs~~~~~~F~~~~~~l~~~~~~~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~~~~ 210 (218)
-- . .. ++ .+.+ ...+++.+++. ..+.++++...-+.+-|-.+|-.|++-+-
T Consensus 57 ~~-~--~~-~~--~e~~----~~al~~~i~~~--~P~~vL~~~T~~Grdla~rlAarL~~gl~ 107 (312)
T PRK11916 57 QN-D--AL-QR--TENY----AESIAALLKDK--HPAMLLLAATKRGKALAARLSVQLNAALV 107 (312)
T ss_pred Cc-c--cc-cC--hHHH----HHHHHHHHHhc--CCCEEEECCCcchHHHHHHHHHHhCCCcc
Confidence 43 1 11 22 2333 45677776653 36678888888899999999999988664
No 164
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=24.30 E-value=3.4e+02 Score=26.41 Aligned_cols=72 Identities=11% Similarity=-0.023 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcccCCCCeEEEEe
Q 027833 25 CEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFVASFTLVL 103 (218)
Q Consensus 25 ~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~p-d~lmELlll~~alr~~ga~~ItlVi 103 (218)
.-.+|-.+|..+ +.++..+.=..=..| +..+.-..-..|++|+||..+-.. ..++|.+ +.+++.|+ .|..++
T Consensus 355 GiPlAt~lA~~l-g~p~v~vRKe~K~~G--~~~~ieG~~~~G~rVlIVDDViTTGgSi~eai---e~l~~aG~-~V~~v~ 427 (477)
T PRK05500 355 SLPTATGLALHL-HHPMIFPRKEVKAHG--TRRLIEGNFHPGETVVVVDDILITGKSVMEGA---EKLKSAGL-NVRDIV 427 (477)
T ss_pred hHHHHHHHHHHh-CCCEEEEecCcCccC--CCceEecCCCCcCEEEEEEeccccCHHHHHHH---HHHHHCCC-EEEEEE
Confidence 457899999999 888743322211246 443333333578999999887655 6776665 55556675 333333
No 165
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=24.24 E-value=2.2e+02 Score=24.59 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEeCCchhhh
Q 027833 124 FTMARILSNIPTSRGGPTSLVIYDIHALQER 154 (218)
Q Consensus 124 k~va~lL~~~~~~~~G~d~vitvDlHs~~~~ 154 (218)
.-+.+.+. .+|+|-++..|+|-++..
T Consensus 94 ~~fi~~~~-----~aG~~giiipDl~~ee~~ 119 (242)
T cd04724 94 ERFLRDAK-----EAGVDGLIIPDLPPEEAE 119 (242)
T ss_pred HHHHHHHH-----HCCCcEEEECCCCHHHHH
Confidence 34566666 699999999999965443
No 166
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=23.50 E-value=4.8e+02 Score=23.77 Aligned_cols=42 Identities=14% Similarity=0.335 Sum_probs=25.0
Q ss_pred EeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCCchh
Q 027833 102 VLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQ 152 (218)
Q Consensus 102 ViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~ 152 (218)
++||++ .+...+|....--=+.++.+ .-|+|++|+.+..-..
T Consensus 193 ~~p~~~----g~~~~DGgv~~~iPv~~l~~-----~~nvn~~Ivsq~np~~ 234 (298)
T cd07206 193 IVPYLP----GRKWVDGSVSDDLPAKRLAR-----LYNVNHFIVSQTNPHV 234 (298)
T ss_pred cccCCC----CCcccCCCcCcchHHHHHHH-----HcCCCeEEEEcccCcc
Confidence 467665 35666675543333444444 4458999998876433
No 167
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=23.44 E-value=4.7e+02 Score=22.54 Aligned_cols=80 Identities=16% Similarity=0.010 Sum_probs=48.0
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEecCCchhHHHHHHHHHhccc
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPR 93 (218)
Q Consensus 14 ~~~~~i~~g~~~~~La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~pd~lmELlll~~alr~ 93 (218)
+.++.|.+--.|-..++++|..|. .++...+.-=|. |-.--....+...||+|.-|-+ -+-=|++.++..+|+
T Consensus 39 ~gkv~V~G~GkSG~Igkk~Aa~L~--s~G~~a~fv~p~---ea~hgdlg~i~~~DvviaiS~S--GeT~el~~~~~~aK~ 111 (202)
T COG0794 39 KGKVFVTGVGKSGLIGKKFAARLA--STGTPAFFVGPA---EALHGDLGMITPGDVVIAISGS--GETKELLNLAPKAKR 111 (202)
T ss_pred CCcEEEEcCChhHHHHHHHHHHHH--ccCCceEEecCc---hhccCCccCCCCCCEEEEEeCC--CcHHHHHHHHHHHHH
Confidence 345555554456677999988872 222222222222 2222223355567999987765 455578889999999
Q ss_pred CCCCeEE
Q 027833 94 LFVASFT 100 (218)
Q Consensus 94 ~ga~~It 100 (218)
.|++=|.
T Consensus 112 ~g~~lia 118 (202)
T COG0794 112 LGAKLIA 118 (202)
T ss_pred cCCcEEE
Confidence 9975443
No 168
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=23.18 E-value=1.5e+02 Score=25.97 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=0.0
Q ss_pred CCCCCeEEEEEecCCchhHHHHHHHHHhcccCCCCeEEEEeecCC
Q 027833 63 DIRGQHVAFLASFSSPGVIFEQISVIYALPRLFVASFTLVLPFFP 107 (218)
Q Consensus 63 ~vrG~dV~Iiqs~~~pd~lmELlll~~alr~~ga~~ItlViPYl~ 107 (218)
+.+|++|+|+.....-..-|-..+ .++|..++++|.+-.|-.|
T Consensus 121 ~~~g~~VIlVDDGiATGatm~aAi--~~~r~~~~~~IviAVPV~p 163 (220)
T COG1926 121 SLKGRTVILVDDGIATGATMKAAV--RALRAKGPKEIVIAVPVAP 163 (220)
T ss_pred CCCCCEEEEEeCCcchhHHHHHHH--HHHHhcCCceEEEEcccCC
No 169
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=23.14 E-value=4.5e+02 Score=22.01 Aligned_cols=71 Identities=8% Similarity=-0.028 Sum_probs=40.6
Q ss_pred CCcHHHHHHHHHHcCCCceeeeeEe-ecCC-CC------------CeeEEEecC--CCCCCeEEEEEecCCc-hhHHHHH
Q 027833 23 VECEELARKVAAQSDLITLQSINWR-NFAD-GW------------PNLYINSAH--DIRGQHVAFLASFSSP-GVIFEQI 85 (218)
Q Consensus 23 ~~~~~La~~Ia~~l~~~~~~~~~~~-~FpD-G~------------~E~~v~i~~--~vrG~dV~Iiqs~~~p-d~lmELl 85 (218)
...-.+|-.+|..| +.++..+.-. +.+. |+ .|..+.+.. --+|++|+||..+-.. ..+.+
T Consensus 59 ~~GiplA~~lA~~L-g~p~v~vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~G~rVlIVDDviaTGgT~~a-- 135 (189)
T PRK09219 59 ASGIAPAVMAALAL-GVPVVFAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEGDRVLIIDDFLANGQAALG-- 135 (189)
T ss_pred cccHHHHHHHHHHH-CCCEEEEEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCCCCEEEEEeehhhcChHHHH--
Confidence 44568999999999 8886444321 1221 20 022333332 2378999999776444 34333
Q ss_pred HHHHhcccCCCC
Q 027833 86 SVIYALPRLFVA 97 (218)
Q Consensus 86 ll~~alr~~ga~ 97 (218)
+++.++++|++
T Consensus 136 -~~~lv~~aGa~ 146 (189)
T PRK09219 136 -LIDIIEQAGAK 146 (189)
T ss_pred -HHHHHHHCCCE
Confidence 44556678873
No 170
>PLN03034 phosphoglycerate kinase; Provisional
Probab=23.02 E-value=7.2e+02 Score=24.38 Aligned_cols=123 Identities=16% Similarity=0.070 Sum_probs=70.1
Q ss_pred CCCCCeEEEEEecCCc----------hhHHHHHHHHHhcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhc
Q 027833 63 DIRGQHVAFLASFSSP----------GVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSN 132 (218)
Q Consensus 63 ~vrG~dV~Iiqs~~~p----------d~lmELlll~~alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~ 132 (218)
+++||.|++-..+..| ..|-..+-.+.-|-+.|++ |++ + |-|.|.-.+-+-+|.+-+|+.|+.
T Consensus 89 dl~GK~VlvRvD~NvPi~~~g~I~Dd~RI~a~lpTI~~L~~~gak-vVl-~-----SHlGRPkg~~~~~SL~pva~~Ls~ 161 (481)
T PLN03034 89 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLISNGAK-VIL-S-----SHLGRPKGVTPKFSLAPLVPRLSE 161 (481)
T ss_pred hcCCCEEEEEeccCCCcCCCCcccChHhHHHHHHHHHHHHHCCCe-EEE-E-----EecCCCCCCCcccCHHHHHHHHHH
Confidence 6889999987776544 3566777778888788886 333 3 444444222346899999998873
Q ss_pred CCCCCCCCCEEEEEeCCchhhh----cccccc---cccc-----ccccHHHHHHHHhhCCCCCCEEEEeCCcccHHHHHH
Q 027833 133 IPTSRGGPTSLVIYDIHALQER----FYFSDH---VLPL-----FETGIPLLKQRLHQLPDANNLLHFRMMEPGSDSTRC 200 (218)
Q Consensus 133 ~~~~~~G~d~vitvDlHs~~~~----~~F~~~---~~~l-----~~~~~~~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~ 200 (218)
-.|.+-.++=|...+... +.=++. ++|+ +...-+.+++.+.++. | +.|-=-.|+.+|+..
T Consensus 162 ----lL~~~V~fv~d~~G~~~~~~i~~l~~GeVlLLENvRF~~eE~~nd~~fa~~LA~l~---D-iyVNDAFgtaHR~ha 233 (481)
T PLN03034 162 ----LLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNEPEFAKKLASLA---D-LYVNDAFGTAHRAHA 233 (481)
T ss_pred ----HhCCCeEECCCCCCHHHHHHHhcCCCCcEEEEeccCcCcccccCcHHHHHHHHhhC---C-EEEecchhhhHhccc
Confidence 455333333345544332 111111 1122 1122346777776642 2 566666777777665
No 171
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=22.96 E-value=1.1e+02 Score=25.98 Aligned_cols=84 Identities=14% Similarity=0.097 Sum_probs=48.6
Q ss_pred HHHhcccCCCCeEEEE-------eecCCCccccccCCCCCcchHH---------HHHHHHhcCCCCCCCCCEEEEEeCCc
Q 027833 87 VIYALPRLFVASFTLV-------LPFFPTGSFERMEEEGDVATAF---------TMARILSNIPTSRGGPTSLVIYDIHA 150 (218)
Q Consensus 87 l~~alr~~ga~~ItlV-------iPYl~YsRQDR~~~~Ge~vsak---------~va~lL~~~~~~~~G~d~vitvDlHs 150 (218)
+.+-|++.||+.|--+ +|=+.-.|- ...+..-.+|. .-+..|. .+| ..||++|+.-
T Consensus 49 I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~~R~--~v~~~GIy~ADVVLVPLEDGDR~EAL~-----~mG-K~VIaIDLNP 120 (178)
T PF02006_consen 49 IAELLREHGAEEVLGVNPDASERIPGLDHERA--KVSKEGIYSADVVLVPLEDGDRTEALV-----KMG-KTVIAIDLNP 120 (178)
T ss_pred HHHHHHHcCCCEeeccCCcccccCCCCCCccc--eECcccceeccEEEeccCCCcHHHHHH-----HcC-CeEEEEeCCC
Confidence 3445568888777555 555554443 22222223332 2467777 788 9999999994
Q ss_pred h-hhhcccccc-ccccccccHHHHHHHHhhC
Q 027833 151 L-QERFYFSDH-VLPLFETGIPLLKQRLHQL 179 (218)
Q Consensus 151 ~-~~~~~F~~~-~~~l~~~~~~~l~~~l~~~ 179 (218)
. ++...-.++ ++|+ -.+.|.+.++.+++
T Consensus 121 LSRTar~AtitIVDni-~RA~p~~~~~~~~l 150 (178)
T PF02006_consen 121 LSRTARTATITIVDNI-TRAIPNMIEFAREL 150 (178)
T ss_pred cccccccCceeeehhH-HHHHHHHHHHHHHH
Confidence 2 222222333 4444 46788888887653
No 172
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=22.89 E-value=2.7e+02 Score=25.03 Aligned_cols=72 Identities=14% Similarity=0.101 Sum_probs=52.0
Q ss_pred cchHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHHHHHHhhCCCCCCEEEEeCCc-------
Q 027833 120 VATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQLPDANNLLHFRMME------- 192 (218)
Q Consensus 120 ~vsak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~~l~~~~~~~~~vvvsPD~------- 192 (218)
-.+.+.-.++|+ ..|+|.++.++ |+..+.++ ++...+-+.+.+.. .-..+||..|.
T Consensus 53 l~~~~~k~~~l~-----~~Gvd~~~~~~---------F~~~~a~l--s~e~Fi~~~l~~~l-~~~~ivvG~Df~FG~~~~ 115 (288)
T TIGR00083 53 LTPLEDKARQLQ-----IKGVEQLLVVV---------FDEEFANL--SALQFIDQLIVKHL-HVKFLVVGDDFRFGHDRQ 115 (288)
T ss_pred CCCHHHHHHHHH-----HcCCCEEEEeC---------CCHHHHcC--CHHHHHHHHHHhcc-CCcEEEECCCccCCCCCC
Confidence 456688889999 89999999998 55456677 77777777765421 23468899886
Q ss_pred ccHHHHHHHHHHcCcc
Q 027833 193 PGSDSTRCWIISLRWC 208 (218)
Q Consensus 193 Ga~~ra~~~a~~l~~~ 208 (218)
|..+.-+.+++..|.+
T Consensus 116 G~~~~L~~~~~~~g~~ 131 (288)
T TIGR00083 116 GDFLLLQLFGNTTIFC 131 (288)
T ss_pred CCHHHHHHhccccCcE
Confidence 6777777777776644
No 173
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=22.66 E-value=1.9e+02 Score=24.24 Aligned_cols=27 Identities=7% Similarity=-0.123 Sum_probs=23.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHHcCccc
Q 027833 183 NNLLHFRMMEPGSDSTRCWIISLRWCV 209 (218)
Q Consensus 183 ~~~vvvsPD~Ga~~ra~~~a~~l~~~~ 209 (218)
+-.+|++|+.||...|..+|..|+.-+
T Consensus 85 ~~D~Ivgi~~gG~~~A~~lA~~L~~~~ 111 (200)
T PRK02277 85 EVDVVVGIAKSGVPLATLVADELGKDL 111 (200)
T ss_pred CCCEEEeeccCCHHHHHHHHHHhCCCc
Confidence 446899999999999999999999654
No 174
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=22.40 E-value=3.3e+02 Score=25.94 Aligned_cols=132 Identities=18% Similarity=0.154 Sum_probs=80.8
Q ss_pred CCCCCCeEEEEEecCCc---------hhHHHHHHHHHhcccCCCCeEEEEeecCCCccccccCCCCCcchHHHHHHHHhc
Q 027833 62 HDIRGQHVAFLASFSSP---------GVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSN 132 (218)
Q Consensus 62 ~~vrG~dV~Iiqs~~~p---------d~lmELlll~~alr~~ga~~ItlViPYl~YsRQDR~~~~Ge~vsak~va~lL~~ 132 (218)
.+++||.|++-..+..| ..|-.-+=.+..|.+.||+ |++ + |.|-|.-..-+-.|.+-+|+.|+
T Consensus 10 ~~~~gK~VlvRvD~NvP~~dG~I~dd~RI~a~lpTIk~l~~~ga~-Vvl-~-----SHlGRPk~~~~~~SL~pva~~Ls- 81 (395)
T COG0126 10 LDLAGKRVLVRVDFNVPVDDGKITDDTRIRAALPTIKYLLEKGAK-VVL-L-----SHLGRPKEYSDKTSLEPVAKRLS- 81 (395)
T ss_pred hcccCCEEEEEeccCCcccCCeeCCcHHHHHhhHHHHHHHhCCCe-EEE-E-----ecCCCCCCCCCcccHHHHHHHHH-
Confidence 45899999998888665 4677788888888899988 444 3 44545422346788888898887
Q ss_pred CCCCCCCCCEEEEEe-CCchhh----h-------------ccccccccccccccHHHHHHHHhhCCCCCCEEEEeCCccc
Q 027833 133 IPTSRGGPTSLVIYD-IHALQE----R-------------FYFSDHVLPLFETGIPLLKQRLHQLPDANNLLHFRMMEPG 194 (218)
Q Consensus 133 ~~~~~~G~d~vitvD-lHs~~~----~-------------~~F~~~~~~l~~~~~~~l~~~l~~~~~~~~~vvvsPD~Ga 194 (218)
...=..|..+| ...+.. . .|...+..+- ..+.+.|++++..+.| +.|---.|+
T Consensus 82 ----~ll~~~V~f~~d~~g~~a~~~v~~l~~GevlLLEN~RF~~~E~~~d-~~~~~~l~k~la~l~D----vfVnDAFgt 152 (395)
T COG0126 82 ----ELLGKEVKFVDDCVGPEARQAVAELKDGEVLLLENVRFYSEEEKND-EEARTELVKKLASLGD----VFVNDAFGT 152 (395)
T ss_pred ----HhcCCceEecccccCHHHHHHHhccCCCcEEEEeeccccccccCcc-hhhHHHHHHHHHhhcC----EEEechhHH
Confidence 33324455554 222211 1 2233232111 2334568888877532 677767888
Q ss_pred HHHHHHHHHHcCcccc
Q 027833 195 SDSTRCWIISLRWCVP 210 (218)
Q Consensus 195 ~~ra~~~a~~l~~~~~ 210 (218)
.+|+.+=-......+|
T Consensus 153 AHRahaS~~g~~~~lp 168 (395)
T COG0126 153 AHRAHASTVGFAKFLP 168 (395)
T ss_pred HHhhccchhhhhhhch
Confidence 9988764444444444
No 175
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=22.35 E-value=1.3e+02 Score=25.55 Aligned_cols=31 Identities=6% Similarity=0.052 Sum_probs=25.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHHcCcccceee
Q 027833 183 NNLLHFRMMEPGSDSTRCWIISLRWCVPRFV 213 (218)
Q Consensus 183 ~~~vvvsPD~Ga~~ra~~~a~~l~~~~~~~~ 213 (218)
+++++|+++.||...++.+++.++.+---|+
T Consensus 70 ~~~vvV~IlrgG~~~~~~l~~~l~~~~~~~i 100 (209)
T PRK00129 70 KKLVIVPILRAGLGMVDGVLKLIPSARVGHI 100 (209)
T ss_pred CeEEEEEEeCCCHHHHHHHHHhCCcCeeeeE
Confidence 5699999999999999999999987433333
No 176
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=22.32 E-value=2e+02 Score=26.38 Aligned_cols=42 Identities=19% Similarity=0.126 Sum_probs=32.2
Q ss_pred ccHHHHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCcccc
Q 027833 167 TGIPLLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRWCVP 210 (218)
Q Consensus 167 ~~~~~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~~~~ 210 (218)
.++|.+.+.++. +....+=.||=.+.+.|+-.++.++|||=-
T Consensus 190 ~AiPha~~~lk~--~g~r~csFSPCIEQvqrtce~l~~~gf~~i 231 (314)
T KOG2915|consen 190 EAIPHAAKILKD--EGGRLCSFSPCIEQVQRTCEALRSLGFIEI 231 (314)
T ss_pred hhhhhhHHHhhh--cCceEEeccHHHHHHHHHHHHHHhCCCceE
Confidence 356677775554 344677789999999999999999999843
No 177
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=22.28 E-value=2e+02 Score=24.32 Aligned_cols=35 Identities=11% Similarity=-0.064 Sum_probs=24.1
Q ss_pred CCCCeEEEEEecCCc-hhHHHHHHHHHhcccCCCCeEEE
Q 027833 64 IRGQHVAFLASFSSP-GVIFEQISVIYALPRLFVASFTL 101 (218)
Q Consensus 64 vrG~dV~Iiqs~~~p-d~lmELlll~~alr~~ga~~Itl 101 (218)
.+-.||+|+-|.+.. .+ ++.++..+|+.|++-|.+
T Consensus 107 ~~~gDvli~iS~SG~s~~---v~~a~~~Ak~~G~~vI~I 142 (196)
T PRK10886 107 GHAGDVLLAISTRGNSRD---IVKAVEAAVTRDMTIVAL 142 (196)
T ss_pred CCCCCEEEEEeCCCCCHH---HHHHHHHHHHCCCEEEEE
Confidence 344688888777544 44 455677888999877665
No 178
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=22.01 E-value=3e+02 Score=19.53 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=15.8
Q ss_pred CcEEEEecCCcHHHHHHHHHHc
Q 027833 15 KQVHLFYCVECEELARKVAAQS 36 (218)
Q Consensus 15 ~~~~i~~g~~~~~La~~Ia~~l 36 (218)
....|+.++.+..-|+.|++.|
T Consensus 43 ~~t~I~y~~~~~~~A~~la~~l 64 (90)
T PF13399_consen 43 ETTTIYYGPGDEAAARELAAAL 64 (90)
T ss_pred CCEEEEECCCCHHHHHHHHHHC
Confidence 4455666777777788888887
No 179
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=21.78 E-value=2.8e+02 Score=24.31 Aligned_cols=60 Identities=5% Similarity=-0.047 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccccccccccccccHHHHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHH
Q 027833 124 FTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQLPDANNLLHFRMMEPGSDSTRCWII 203 (218)
Q Consensus 124 k~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~ 203 (218)
.-+.+.+. .+|+|.+|..|+=.++ . ..+.+++++. ..+-..+++|.. ..+|.+.+++
T Consensus 105 e~f~~~~~-----~aGvdgviipDlp~ee-----------~-----~~~~~~~~~~-gl~~i~lv~P~T-~~eri~~i~~ 161 (256)
T TIGR00262 105 EEFYAKCK-----EVGVDGVLVADLPLEE-----------S-----GDLVEAAKKH-GVKPIFLVAPNA-DDERLKQIAE 161 (256)
T ss_pred HHHHHHHH-----HcCCCEEEECCCChHH-----------H-----HHHHHHHHHC-CCcEEEEECCCC-CHHHHHHHHH
Confidence 44566666 6999999999873221 1 2234444443 334344666665 3455555555
Q ss_pred HcC
Q 027833 204 SLR 206 (218)
Q Consensus 204 ~l~ 206 (218)
...
T Consensus 162 ~~~ 164 (256)
T TIGR00262 162 KSQ 164 (256)
T ss_pred hCC
Confidence 544
No 180
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=21.44 E-value=8.8e+02 Score=24.79 Aligned_cols=157 Identities=12% Similarity=0.030 Sum_probs=77.3
Q ss_pred HHHHHHHcCCCceeeee--EeecCCCCCeeEEEecCCCCCCeEEEEEec-CCchhHHHHHHHHHhcccCCCCeEEEEeec
Q 027833 29 ARKVAAQSDLITLQSIN--WRNFADGWPNLYINSAHDIRGQHVAFLASF-SSPGVIFEQISVIYALPRLFVASFTLVLPF 105 (218)
Q Consensus 29 a~~Ia~~l~~~~~~~~~--~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~-~~pd~lmELlll~~alr~~ga~~ItlViPY 105 (218)
|-.++..+ |++...+. +..|..= +-+.++-... +.-.+|..|. ++|+.+...|-.+..... .+++++|+.=
T Consensus 294 Aia~a~~l-Gi~~~~i~~~L~~f~~~--~gR~e~~~~~-~g~~vIdDSyn~nP~s~~aaL~~l~~~~~--~~~~ilIlG~ 367 (822)
T PRK11930 294 CIAVLLYL-GYSADQIQERMARLEPV--AMRLEVKEGI-NNCTLINDSYNSDLQSLDIALDFLNRRSQ--SKKKTLILSD 367 (822)
T ss_pred HHHHHHHc-CCCHHHHHHHHHhCCCC--CCeeEEEEcC-CCcEEEECCCCCCHHHHHHHHHHHHhccc--CCCEEEEECC
Confidence 44566777 77765443 4555432 2222222221 1223444444 345777776665544322 1356777652
Q ss_pred CCCccccccCCCCCcc--hHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccc-ccccccccccHHHHHHHHhhCCCC
Q 027833 106 FPTGSFERMEEEGDVA--TAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFS-DHVLPLFETGIPLLKQRLHQLPDA 182 (218)
Q Consensus 106 l~YsRQDR~~~~Ge~v--sak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~-~~~~~l~~~~~~~l~~~l~~~~~~ 182 (218)
+. ..|+-. --..+++.|. ..++++|+++.-+.......+. .++..+ .-...+.+++.+....
T Consensus 368 m~--------elG~~~~~~~~~l~~~l~-----~~~i~~vi~~G~~~~~~~~~~~~~~~~~~--~~~e~a~~~l~~~~~~ 432 (822)
T PRK11930 368 IL--------QSGQSPEELYRKVAQLIS-----KRGIDRLIGIGEEISSEASKFEGTEKEFF--KTTEAFLKSFAFLKFR 432 (822)
T ss_pred hH--------hcCchHHHHHHHHHHHHH-----HcCCCEEEEECHHHHHHHHhcCccccEEE--CCHHHHHHHHHHhcCC
Confidence 21 223211 1244666676 5678999999776544433333 122222 2344566666654455
Q ss_pred CCEEEEeC--CcccHHHHHHHHHHcC
Q 027833 183 NNLLHFRM--MEPGSDSTRCWIISLR 206 (218)
Q Consensus 183 ~~~vvvsP--D~Ga~~ra~~~a~~l~ 206 (218)
++.|++-- +.+=.+-++.+-.+.|
T Consensus 433 gDvVLlKGSr~~~le~i~~~~~~~~~ 458 (822)
T PRK11930 433 NELILVKGARKFEFEQITELLEQKVH 458 (822)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhhh
Confidence 66676633 3333333444444433
No 181
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.13 E-value=2.1e+02 Score=21.71 Aligned_cols=42 Identities=12% Similarity=0.042 Sum_probs=31.1
Q ss_pred eeEEEecCCCCCCeEEEEEecCCchhHHHHHHHHHhcccCCC
Q 027833 55 NLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRLFV 96 (218)
Q Consensus 55 E~~v~i~~~vrG~dV~Iiqs~~~pd~lmELlll~~alr~~ga 96 (218)
|+.++++.-+...+|+|+....+++..-+.+-++..||..|.
T Consensus 15 ~~~~~~P~~lap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi 56 (121)
T cd00858 15 RIVLRLPPALAPIKVAVLPLVKRDELVEIAKEISEELRELGF 56 (121)
T ss_pred cEEEEcCCCcCCcEEEEEecCCcHHHHHHHHHHHHHHHHCCC
Confidence 999999998888899988654223444466677888888764
No 182
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=20.85 E-value=2.6e+02 Score=20.57 Aligned_cols=42 Identities=12% Similarity=0.213 Sum_probs=27.3
Q ss_pred eecCCCCCeeEEEecCCCCCCeEEEEEecCCchhHHHHHHHHHhcccCCCCeEEEEeec
Q 027833 47 RNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRLFVASFTLVLPF 105 (218)
Q Consensus 47 ~~FpDG~~E~~v~i~~~vrG~dV~Iiqs~~~pd~lmELlll~~alr~~ga~~ItlViPY 105 (218)
-+|||| +... +.+...+.+.+++..+.+ ...+.....++-+|
T Consensus 10 vRlP~G--~r~~--------------rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~F 51 (82)
T cd01773 10 LRYPDG--KREQ--------------IALPEQAKLLALVRHVQS-KGYPNERFELLTNF 51 (82)
T ss_pred EECCCC--CEEE--------------EEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCC
Confidence 578888 5432 345555778888888888 34455777776443
No 183
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=20.80 E-value=3.2e+02 Score=19.46 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=17.7
Q ss_pred chHHHHHHHHhcCCCCCCCCCEEEEEeCCchh
Q 027833 121 ATAFTMARILSNIPTSRGGPTSLVIYDIHALQ 152 (218)
Q Consensus 121 vsak~va~lL~~~~~~~~G~d~vitvDlHs~~ 152 (218)
+|..-+.++++ . +-..++++|+-+..
T Consensus 2 i~~~~l~~~~~-----~-~~~~~~iiDvR~~~ 27 (101)
T cd01528 2 ISVAELAEWLA-----D-EREEPVLIDVREPE 27 (101)
T ss_pred CCHHHHHHHHh-----c-CCCCCEEEECCCHH
Confidence 56777788887 3 22357889998754
No 184
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=20.65 E-value=3.6e+02 Score=22.89 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=51.0
Q ss_pred CCCcEEEEecCC-cHHHHHHHHHHcC-----CCceeeeeEeecCCCCCeeEEE----------ecCCCCCCeEEEEEec-
Q 027833 13 QKKQVHLFYCVE-CEELARKVAAQSD-----LITLQSINWRNFADGWPNLYIN----------SAHDIRGQHVAFLASF- 75 (218)
Q Consensus 13 ~~~~~~i~~g~~-~~~La~~Ia~~l~-----~~~~~~~~~~~FpDG~~E~~v~----------i~~~vrG~dV~Iiqs~- 75 (218)
+-.++.+++-.+ .-+||++|++.+. .++++.+.+.-|-|- =.+.. ++.++.||.|++|...
T Consensus 29 ~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~yRDD--l~~~~~~~p~~~~t~~~~di~~k~VILVDDVL 106 (179)
T COG2065 29 GLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDD--LTQKGPLRPQAKTTILPFDITGKRVILVDDVL 106 (179)
T ss_pred CCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEeEEeech--hhhcCccCCcccCccCcccccCCEEEEEeeec
Confidence 334666655444 6689999998873 356788888888774 11111 2467889999999774
Q ss_pred CCchhHHHHHHHHHhcccCC-CCeEEEEe
Q 027833 76 SSPGVIFEQISVIYALPRLF-VASFTLVL 103 (218)
Q Consensus 76 ~~pd~lmELlll~~alr~~g-a~~ItlVi 103 (218)
++--.+= -.++|+...| +.+|.|.+
T Consensus 107 ytGRTIR---AAldal~d~GRPa~I~Lav 132 (179)
T COG2065 107 YTGRTIR---AALDALVDYGRPAKIQLAV 132 (179)
T ss_pred ccCccHH---HHHHHHHhcCCcceEEEEE
Confidence 2220000 1234444555 46676543
No 185
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=20.58 E-value=9.7e+02 Score=24.91 Aligned_cols=96 Identities=18% Similarity=0.172 Sum_probs=52.0
Q ss_pred HHHHHHHcCCCceeeee--EeecC------CCCCeeEEEecCCCCCCeEEEEEecCCchhHHHHHHHHHhcccCCCCeEE
Q 027833 29 ARKVAAQSDLITLQSIN--WRNFA------DGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRLFVASFT 100 (218)
Q Consensus 29 a~~Ia~~l~~~~~~~~~--~~~Fp------DG~~E~~v~i~~~vrG~dV~Iiqs~~~pd~lmELlll~~alr~~ga~~It 100 (218)
|-.++..+ +++...+. +..|. .|-.|+. ...|.. +|+..-++|+.+-.++-.+..+ ..++.+
T Consensus 691 Aiaaa~~l-gi~~e~I~~gL~~F~~~~~~~pGR~e~~-----~~~g~~-vI~DyAHNP~a~~all~~l~~~---~~~r~i 760 (864)
T TIGR02068 691 AVAAAWAL-GVPIELIRAGIRTFDADAAQAPGRFNLF-----NLGGAH-VLVDYGHNPAAIEAVGAAIRNW---PARRRI 760 (864)
T ss_pred HHHHHHHc-CCCHHHHHHHHHhccccccCCCCceEEE-----EeCCcE-EEEEcCCCHHHHHHHHHHHHhc---CCCCEE
Confidence 44456667 67654443 56663 4522332 122333 4554445667777666655544 335667
Q ss_pred EEeecCCCccccccCCCCCcchHHHHHHHHhcCCCCCCCCCEEEEEeCC
Q 027833 101 LVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIH 149 (218)
Q Consensus 101 lViPYl~YsRQDR~~~~Ge~vsak~va~lL~~~~~~~~G~d~vitvDlH 149 (218)
+|+.=++ ||.. -....+++++. ..+|+||+.+..
T Consensus 761 ~Vig~~g----dr~~-----~~~~~lg~~l~------~~~d~vil~~~~ 794 (864)
T TIGR02068 761 GVIGGPG----DRRD-----EDLVEQGELLG------GAFDQIILKEDD 794 (864)
T ss_pred EEECCCC----CCCh-----hHHHHHHHHHH------HhCCEEEEEeCC
Confidence 7766553 4432 12345566665 236999988765
No 186
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=20.34 E-value=6.3e+02 Score=22.62 Aligned_cols=71 Identities=20% Similarity=0.185 Sum_probs=39.0
Q ss_pred cCCcHHHHHHHHHHcCCCceeeeeEe-e----------cCCCCC--eeEEEec-CC-CCCCeEEEEEecCCc-hhHHHHH
Q 027833 22 CVECEELARKVAAQSDLITLQSINWR-N----------FADGWP--NLYINSA-HD-IRGQHVAFLASFSSP-GVIFEQI 85 (218)
Q Consensus 22 g~~~~~La~~Ia~~l~~~~~~~~~~~-~----------FpDG~~--E~~v~i~-~~-vrG~dV~Iiqs~~~p-d~lmELl 85 (218)
-...-.||..+|..| |.++.-+.-. + |..|.. .....+. .. .+|++|+||..+-.. ..+.++
T Consensus 136 etkGIpLA~avA~~L-~vp~vivRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~TGgTi~a~- 213 (268)
T TIGR01743 136 ATKGIPLAYAVASVL-NVPLVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAGGTINGM- 213 (268)
T ss_pred ccchHHHHHHHHHHH-CCCEEEEEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecccCHHHHHH-
Confidence 344668999999999 8886544322 1 111200 0011121 12 478999999776544 444443
Q ss_pred HHHHhcccCCC
Q 027833 86 SVIYALPRLFV 96 (218)
Q Consensus 86 ll~~alr~~ga 96 (218)
++.+++.|+
T Consensus 214 --i~Ll~e~Ga 222 (268)
T TIGR01743 214 --INLLDEFDA 222 (268)
T ss_pred --HHHHHHCCC
Confidence 344455666
No 187
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=20.28 E-value=1.9e+02 Score=26.07 Aligned_cols=45 Identities=18% Similarity=0.048 Sum_probs=27.3
Q ss_pred CCeEEEEEecCCchhHHHHHHHHHhcccCCCCeEEEEeecCCCccc
Q 027833 66 GQHVAFLASFSSPGVIFEQISVIYALPRLFVASFTLVLPFFPTGSF 111 (218)
Q Consensus 66 G~dV~Iiqs~~~pd~lmELlll~~alr~~ga~~ItlViPYl~YsRQ 111 (218)
|-.|.+..++.+.++.-|+.-+++-+++.|++.+. +.|.++|.|.
T Consensus 162 G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~-i~p~~~~~~a 206 (318)
T TIGR03470 162 GFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMT-ISPGYAYEKA 206 (318)
T ss_pred CCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEE-EecCcccccc
Confidence 44454443333334444555555556778998765 5799999864
No 188
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=20.20 E-value=1.1e+02 Score=27.72 Aligned_cols=74 Identities=18% Similarity=0.099 Sum_probs=41.7
Q ss_pred CcEEEEecCCcHH---HHHHHHHHcCCCceeeeeEeecCCCCCeeEEEecCCCCCCeEEEEEe-----cCCchhHHHHHH
Q 027833 15 KQVHLFYCVECEE---LARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLAS-----FSSPGVIFEQIS 86 (218)
Q Consensus 15 ~~~~i~~g~~~~~---La~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~vrG~dV~Iiqs-----~~~pd~lmELll 86 (218)
..+.|+.|++-.. |++.+-... .+++++ |.| ++.+- .+.|++|++++- ..+|..+ -.--
T Consensus 4 p~igIIgGSGl~~~~~l~~~~~~~~-~tpyg~------psg--~l~~G---~l~G~~V~~l~RhGr~H~y~p~~i-~~rA 70 (289)
T PRK08931 4 AVLGIIGGSGVYDIDGLEDARWERV-ESPWGE------PSD--ALLFG---RLGGVPMVFLPRHGRGHRLSPSDI-NYRA 70 (289)
T ss_pred ceEEEEecCCcCCccccccceeeee-EcCCCC------CcC--cEEEE---EECCEEEEEEeCCCCCCccChHHc-ccHH
Confidence 4678898888552 444443333 344444 466 54442 355789999962 1222221 1112
Q ss_pred HHHhcccCCCCeEEE
Q 027833 87 VIYALPRLFVASFTL 101 (218)
Q Consensus 87 l~~alr~~ga~~Itl 101 (218)
-+.++|..|+++|.+
T Consensus 71 ni~alk~lGv~~ii~ 85 (289)
T PRK08931 71 NIDALKRAGVTDIVS 85 (289)
T ss_pred HHHHHHHcCCCEEEE
Confidence 566888889888764
No 189
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=20.18 E-value=56 Score=23.93 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=13.3
Q ss_pred HhcccCCCCeEEEEeecCCC
Q 027833 89 YALPRLFVASFTLVLPFFPT 108 (218)
Q Consensus 89 ~alr~~ga~~ItlViPYl~Y 108 (218)
+.|...|+++| +|+|||=.
T Consensus 44 ~~l~~~g~~~i-vvvP~fL~ 62 (105)
T PF01903_consen 44 ERLVAQGARRI-VVVPYFLF 62 (105)
T ss_dssp HHHHCCTCSEE-EEEEESSS
T ss_pred HHHHHcCCCeE-EEEeeeec
Confidence 44446688885 67799864
No 190
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=20.14 E-value=2.2e+02 Score=21.79 Aligned_cols=60 Identities=8% Similarity=0.035 Sum_probs=41.5
Q ss_pred CEEEEEeCCchhhhccccccccccccccHHHHHHHHhhCCCCCCEEEEeCCcccHHHHHHHHHHcCccc
Q 027833 141 TSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRWCV 209 (218)
Q Consensus 141 d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~~l~~~~~~~~~vvvsPD~Ga~~ra~~~a~~l~~~~ 209 (218)
.+.+.|++|++.-..- ...+.++ ...|.+.+++.+ +.++.+=|...-+ +..+|..|+..-
T Consensus 17 ~K~llVylhs~~~~~~-~~fc~~~--l~~~~v~~~ln~-----~fv~w~~dv~~~e-g~~la~~l~~~~ 76 (116)
T cd02991 17 LRFLLVYLHGDDHQDT-DEFCRNT--LCAPEVIEYINT-----RMLFWACSVAKPE-GYRVSQALRERT 76 (116)
T ss_pred CCEEEEEEeCCCCccH-HHHHHHH--cCCHHHHHHHHc-----CEEEEEEecCChH-HHHHHHHhCCCC
Confidence 4899999999853211 1124666 677899999953 6788888876544 577888887753
Done!