Query 027833
Match_columns 218
No_of_seqs 106 out of 1132
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 18:08:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027833.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2201-2205//hhsearch_pdb/027833hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s5j_B Ribose-phosphate pyroph 1.0 1 1 377.2 19.5 184 15-208 2-188 (326)
2 3dah_A Ribose-phosphate pyroph 1.0 1 1 372.0 21.1 183 15-208 6-191 (319)
3 3lrt_A Ribose-phosphate pyroph 1.0 1 1 352.3 20.1 176 17-208 1-178 (286)
4 2ji4_A Phosphoribosyl pyrophos 1.0 1 1 351.5 17.8 189 8-208 22-216 (379)
5 1u9y_A RPPK;, ribose-phosphate 1.0 1 1 336.6 20.3 179 17-208 1-180 (284)
6 1dku_A Protein (phosphoribosyl 1.0 1 1 324.0 21.6 184 14-208 7-192 (317)
7 1dqn_A Guanine phosphoribosylt 1.0 1 1 64.7 -1.3 81 120-209 4-87 (230)
8 2aee_A OPRT, oprtase, orotate 1.0 1 1 47.6 5.1 70 23-99 77-148 (211)
9 3s5j_B Ribose-phosphate pyroph 1.0 1 1 39.6 11.8 137 15-179 164-303 (326)
10 3dah_A Ribose-phosphate pyroph 1.0 1 1 39.2 9.5 134 15-179 167-306 (319)
No 1
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=1.00 E-value=1 Score=377.17 Aligned_cols=184 Identities=18% Similarity=0.237 Sum_probs=176.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCC--HHHHHHHHHHHHCC
Q ss_conf 9679995389499999999771997032016755199997268983588899849999732894--43999999997433
Q 027833 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALP 92 (218)
Q Consensus 15 ~~~~i~~g~s~~~la~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~v~G~dV~Iv~s~~~~--d~imELlll~~alr 92 (218)
++++||+|+++++||++||+.| |++++++++++|||| |.++++.++|||+||||+||+++| |++||||+|++|+|
T Consensus 2 ~~~~if~g~~~~~La~~ia~~l-g~~l~~~~~~~F~dG--E~~v~i~esvrg~dV~iiqs~~~p~nd~lmeLl~~idA~k 78 (326)
T 3s5j_B 2 PNIKIFSGSSHQDLSQKIADRL-GLELGKVVTKKFSNQ--ETCVEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACK 78 (326)
T ss_dssp -CEEEEECSSCCHHHHHHHHHT-TCCCCCEEEEECTTS--CEEEEECSCCTTCEEEEECCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHH-CCCEEEEEEEECCCC--CEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 9639997899899999999974-996141588687999--7789978876898489995389982579999999999997
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 17997699995058886542357899720199999987069999899997999837803210113544344444517999
Q 027833 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLL 172 (218)
Q Consensus 93 ~~ga~~ItlViPYl~YsRQDR~~~~ge~isak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l 172 (218)
+++|+|||+|+||||||||||++++|||+|+|++|+||+ ++|+|+|+|+|+|++++++||++|++|+ ++.|.+
T Consensus 79 ~asA~rIt~ViPY~~YaRQDr~~~~repisak~vA~lL~-----~~G~drvit~DlH~~qiqgfF~ipvd~l--~a~p~l 151 (326)
T 3s5j_B 79 IASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLS-----VAGADHIITMDLHASQIQGFFDIPVDNL--YAEPAV 151 (326)
T ss_dssp HTTCSEEEEEESSCTTTTCCSCTTSSCCCHHHHHHHHHH-----HHTCSEEEEESCSSGGGGGGCSSCEEEE--CSHHHH
T ss_pred HCCCCEEEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHH-----HCCCCEEEEEECCCHHHHHHCCCCEECE--ECHHHH
T ss_conf 668967999546765343677679998871999999998-----7599989999699768874358962020--738999
Q ss_pred HHHHHHC-CCCCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 9998409-99997899908964477999999981963
Q 027833 173 KQRLHQL-PDANNLLHFRMMEPGSDSTRCWIISLRWC 208 (218)
Q Consensus 173 ~~~l~~~-~~~~~~vivaPD~Ga~~ra~~~a~~l~~~ 208 (218)
++|+.+. .+.++++||+||.||.+||+.+|+.|+.-
T Consensus 152 ~~~i~~~~~~~~~~vVVspd~Ggv~~A~~lA~~L~~~ 188 (326)
T 3s5j_B 152 LKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVD 188 (326)
T ss_dssp HHHHHHHCTTGGGCEEEESSGGGHHHHHHHHHHHTCE
T ss_pred HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 9999975586788199998877459999999981999
No 2
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=1.00 E-value=1 Score=371.97 Aligned_cols=183 Identities=22% Similarity=0.274 Sum_probs=176.6
Q ss_pred CCEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCC--HHHHHHHHHHHHCC
Q ss_conf 9679995389499999999771997032016755199997268983588899849999732894--43999999997433
Q 027833 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALP 92 (218)
Q Consensus 15 ~~~~i~~g~s~~~la~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~v~G~dV~Iv~s~~~~--d~imELlll~~alr 92 (218)
++++||+|+++++||++||++| |.+++++++++|||| |.++++.++|||+||||+||+++| |++||||+|++|||
T Consensus 6 ~~~~i~~g~~~~~La~~ia~~l-g~~l~~~~~~~F~dG--E~~v~i~esvrg~dV~iiqs~~~p~nd~lmeLl~~idA~k 82 (319)
T 3dah_A 6 DGLMVFTGNANPALAQEVVKIL-GIPLGKAMVSRFSDG--EIQVEIQENVRGKDVFVLQSTCAPTNDNLMELMIMVDALK 82 (319)
T ss_dssp CCEEEEECSSCHHHHHHHHHHH-TSCCCCEEEEECTTS--CEEEEECSCCBTCEEEEECCCCSSHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHH-CCCEEEEEEEECCCC--CEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 7649998899899999999975-996131388788999--8799978876898699993489997479999999999998
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCC-CCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 1799769999505888654235789-972019999998706999989999799983780321011354434444451799
Q 027833 93 RLFVASFTLVLPFFPTGSFERMEEE-GDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPL 171 (218)
Q Consensus 93 ~~ga~~ItlViPYl~YsRQDR~~~~-ge~isak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~ 171 (218)
+++|+|||+|+||||||||||++++ |||+|+|++|+||+ ++|+|+|+|+|+|++++++||++|++|+ ++.|.
T Consensus 83 ~asA~rIt~ViPY~~YaRQDr~~~~~r~pisak~vA~ll~-----~~G~d~vit~DlH~~qiqgfF~ipvd~l--~a~p~ 155 (319)
T 3dah_A 83 RASAGRITAAIPYFGYARQDRRPRSARVAISAKVVANMLE-----IAGVERIITMDLHADQIQGFFDIPVDNI--YATPI 155 (319)
T ss_dssp HTTBSEEEEEESSCTTTTCCSCCTTCCCCCHHHHHHHHHH-----HHTCCEEEEESCSCGGGGGGCSSCEEEE--CCHHH
T ss_pred HCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-----HCCCCEEEEEECCCHHHHHHCCCCEEEC--CCHHH
T ss_conf 7588679997457653323332478999850999999998-----6499989999799858862258964754--43899
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 9999840999997899908964477999999981963
Q 027833 172 LKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRWC 208 (218)
Q Consensus 172 l~~~l~~~~~~~~~vivaPD~Ga~~ra~~~a~~l~~~ 208 (218)
+++|+++. ..++++||+||.||.+||+.+++.|+.-
T Consensus 156 l~~~i~~~-~~~~~vVVspd~Ggv~~A~~lA~~L~~p 191 (319)
T 3dah_A 156 LLGDLRKQ-NYPDLLVVSPDVGGVVRARALAKQLNCD 191 (319)
T ss_dssp HHHHHHTT-CCTTEEEECCSSTTHHHHHHHHHHTTCE
T ss_pred HHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999971-7898589996787508999999986999
No 3
>3lrt_A Ribose-phosphate pyrophosphokinase; phosphoribosyl transferase, ATP analog binding, ATP-binding, metal-binding, nucleotide biosynthesis; HET: ADP; 1.53A {Thermoplasma volcanium} PDB: 3lpn_A* 3nag_A* 3mbi_A*
Probab=1.00 E-value=1 Score=352.28 Aligned_cols=176 Identities=15% Similarity=0.130 Sum_probs=169.6
Q ss_pred EEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCC--HHHHHHHHHHHHCCCC
Q ss_conf 79995389499999999771997032016755199997268983588899849999732894--4399999999743317
Q 027833 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALPRL 94 (218)
Q Consensus 17 ~~i~~g~s~~~la~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~v~G~dV~Iv~s~~~~--d~imELlll~~alr~~ 94 (218)
|+||+|+++++||++||++| |.+++++++++|||| |.++++.++ |+||||+||+++| |++||||+|++|+|++
T Consensus 1 ~~i~~g~~~~~la~~ia~~l-g~~l~~~~~~~F~dG--E~~v~i~e~--g~dV~iiqs~~~p~nd~lmeLl~~ida~k~~ 75 (286)
T 3lrt_A 1 MKIIALRSSLKLAARIAEEL-KTEPVMPDERRFPDG--ELYLRYDED--LTGHNIFIIGNTHSDAEVMEMILTLSAIQDY 75 (286)
T ss_dssp CEEEECGGGHHHHHHHHHHT-TSCEECCEEEECTTS--CEEEECCSC--CTTSEEEEECCCCSHHHHHHHHHHHHHGGGS
T ss_pred CEEEECCCCHHHHHHHHHHH-CCCEEEEEEEECCCC--CEEEEECCC--CCCEEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 98997899989999999985-997252488887999--889997579--9829999707999727999999999999874
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99769999505888654235789972019999998706999989999799983780321011354434444451799999
Q 027833 95 FVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQ 174 (218)
Q Consensus 95 ga~~ItlViPYl~YsRQDR~~~~ge~isak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~ 174 (218)
+|+|||+|+||||||||||++++|||+|+|++|+||+ .+ +|+|+|+|+|++++++||++|++|+ ++.+.+++
T Consensus 76 ~A~~it~ViPY~~YaRQDr~~~~~e~isak~vA~ll~-----~~-~d~vit~DlH~~~iq~ff~~pvd~l--~~~~~la~ 147 (286)
T 3lrt_A 76 RTKSVNIIAPYYGYARQHQRYKNGEPISSQILTEIYS-----SY-SNSIATVDIHDEKTLSYSKVKFSDL--HANDAIVR 147 (286)
T ss_dssp CCSEEEEEESSCTTTTCCSCSSTTCCCHHHHHHHHHH-----HT-CSEEEEESCSCGGGGGGCSSEEEEE--CCHHHHHH
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH-----HH-HCEEEEECCCHHHHHHHCCCCEEEE--ECHHHHHH
T ss_conf 9887999904761025766679998660999999999-----97-4959996498678841268967896--63999999
Q ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 9840999997899908964477999999981963
Q 027833 175 RLHQLPDANNLLHFRMMEPGSDSTRCWIISLRWC 208 (218)
Q Consensus 175 ~l~~~~~~~~~vivaPD~Ga~~ra~~~a~~l~~~ 208 (218)
|+++ .++++||+||.||..|+..+++.|+.-
T Consensus 148 ~i~~---~~~~vVV~pd~Gg~~~A~~lA~~L~~p 178 (286)
T 3lrt_A 148 YYKN---VDVDYVVSPDDGGLARVADISAKLGKK 178 (286)
T ss_dssp HHTT---SCCSEEEESSSSSHHHHHHHHHHHTCE
T ss_pred HHHH---CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9986---499799997898668999999983998
No 4
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A*
Probab=1.00 E-value=1 Score=351.46 Aligned_cols=189 Identities=19% Similarity=0.266 Sum_probs=177.9
Q ss_pred HHHHCCCCCEEEEECCCCHHHHHH---HHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCC--HHHH
Q ss_conf 300147996799953894999999---99771997032016755199997268983588899849999732894--4399
Q 027833 8 KAKKSQKKQVHLFYCVECEELARK---VAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIF 82 (218)
Q Consensus 8 ~~~~~~~~~~~i~~g~s~~~la~~---Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~v~G~dV~Iv~s~~~~--d~im 82 (218)
+|+ ..+++++||+|+++++||++ ||++| |++++++++++|||| |.++++.++|||+||||+||+++| |++|
T Consensus 22 ~~~-~~~~~~~if~g~~~~~la~~~~~ia~~l-g~~l~~~~~~~F~dG--E~~v~i~esvrg~dV~iiqs~~~~~nd~lm 97 (379)
T 2ji4_A 22 SMN-ITKGGLVLFSANSNSSCMELSKKIAERL-GVEMGKVQVYQEPNR--ETRVQIQESVRGKDVFIIQTVSKDVNTTIM 97 (379)
T ss_dssp --------CCEEEECCCSGGGGHHHHHHHHHH-TCCCCCEEEEECTTS--CEEEEECSCCTTCEEEEECCCCSCHHHHHH
T ss_pred HCC-CCCCCEEEEECCCCHHHHHHHHHHHHHH-CCCEEEEEEEECCCC--CEEEEECCCCCCCEEEEEECCCCCCCHHHH
T ss_conf 115-6668779998999989997699999974-994373588887999--889986787678879999078999517999
Q ss_pred HHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHCCCCCCCC
Q ss_conf 99999974331799769999505888654235789972019999998706999989999799983780321011354434
Q 027833 83 EQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVL 162 (218)
Q Consensus 83 ELlll~~alr~~ga~~ItlViPYl~YsRQDR~~~~ge~isak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~ 162 (218)
|||+|++|||+++|++||+|+||||||||||++. ++|+|+|++|+||+ .+|+|+|+|+|+|++++++||++|++
T Consensus 98 eLl~~idA~k~asA~rit~ViPY~~YaRQdr~~~-r~~i~ak~vA~lL~-----~aGad~vit~DlHs~q~qgfF~ipvD 171 (379)
T 2ji4_A 98 ELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRK-RGSIVSKLLASMMC-----KAGLTHLITMDLHQKEIQGFFNIPVD 171 (379)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSSCSSCCC--------CCHHHHHHHHHH-----HTTCCEEEEESCSSGGGGGGSSSCEE
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC-CCCHHHHHHHHHHH-----HCCCCEEEEECCCCHHHCCCCCCCEE
T ss_conf 9999999987618855799995257100455457-87278999999998-----75998899956798566143699602
Q ss_pred CCCCCCHHHHHHHHHHC-CCCCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 44445179999998409-99997899908964477999999981963
Q 027833 163 PLFETGIPLLKQRLHQL-PDANNLLHFRMMEPGSDSTRCWIISLRWC 208 (218)
Q Consensus 163 ~l~~~~~~~l~~~l~~~-~~~~~~vivaPD~Ga~~ra~~~a~~l~~~ 208 (218)
|+ .+.|.+++|+.+. .+.++++||+||.||+.+|..+|+.|+.-
T Consensus 172 ~l--~A~p~La~~I~~~~~~~~~~vVV~pd~GGv~~A~~lA~~L~~p 216 (379)
T 2ji4_A 172 NL--RASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLG 216 (379)
T ss_dssp EE--CCHHHHHHHHHHHSTTGGGEEEEESSGGGHHHHHHHHHHTTCE
T ss_pred EE--CCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 00--0589999999986166788689997665699999999985899
No 5
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Probab=1.00 E-value=1 Score=336.62 Aligned_cols=179 Identities=17% Similarity=0.221 Sum_probs=171.9
Q ss_pred EEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCC-HHHHHHHHHHHHCCCCC
Q ss_conf 79995389499999999771997032016755199997268983588899849999732894-43999999997433179
Q 027833 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLF 95 (218)
Q Consensus 17 ~~i~~g~s~~~la~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~v~G~dV~Iv~s~~~~-d~imELlll~~alr~~g 95 (218)
++||+|+++++||++||++| |.+++++++++|||| |.++++.+++||+||||+||+++| |++||||+|++|+|+++
T Consensus 1 ~~i~~~~~~~~la~~ia~~l-~~~l~~~~~~~F~dG--E~~v~i~~~vrg~dv~iiqs~~~pn~~lmell~~~~a~~~~~ 77 (284)
T 1u9y_A 1 MIVVSGSQSQNLAFKVAKLL-NTKLTRVEYKRFPDN--EIYVRIVDEINDDEAVIINTQKNQNDAIVETILLCDALRDEG 77 (284)
T ss_dssp CEEEECTTCHHHHHHHHHHT-TCCEECEEEEECTTC--CEEEEECSCCCSSEEEEECCCSSHHHHHHHHHHHHHHHHTTT
T ss_pred CEEEECCCCHHHHHHHHHHH-CCEEEEEEEEECCCC--CEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 98997899889999999976-990464578887999--889985787779989999179999179999999999999709
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 97699995058886542357899720199999987069999899997999837803210113544344444517999999
Q 027833 96 VASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQR 175 (218)
Q Consensus 96 a~~ItlViPYl~YsRQDR~~~~ge~isak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~l~~~ 175 (218)
|++||+|+||||||||||++++|||+|+|++|+||+ .+ +|+++|+|+|+++.++||+.|++++ ++.+.++++
T Consensus 78 a~~i~~v~Py~~yaRqdr~~~~~~~i~ak~vA~ll~-----~~-~d~vit~dlH~~~~~~~f~~p~d~l--~a~~~La~~ 149 (284)
T 1u9y_A 78 VKKITLVAPYLAYARQDKKFNPGEAISIRALAKIYS-----NI-VDKLITINPHETHIKDFFTIPFIYG--DAVPKLAEY 149 (284)
T ss_dssp CCEEEEECSSCTTCSCSSCSSTTBCCHHHHHHHHHH-----HH-CSEEEEESCSCGGGGGGCSSCEEEE--CCHHHHHHH
T ss_pred CCEEEEEECCCCCCEEECCCCCCCCHHHHHHHHHHH-----HC-CCEEEEECCCCHHHHHHHCCCHHHH--HHHHHHHHH
T ss_conf 864899841452211311126897358999999986-----41-6899996489869987767951576--599999999
Q ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 840999997899908964477999999981963
Q 027833 176 LHQLPDANNLLHFRMMEPGSDSTRCWIISLRWC 208 (218)
Q Consensus 176 l~~~~~~~~~vivaPD~Ga~~ra~~~a~~l~~~ 208 (218)
+.+ +.+++++++||.|+..+++.+++.++.-
T Consensus 150 i~~--~~~~~vVv~pd~Gg~~~a~~la~~l~~p 180 (284)
T 1u9y_A 150 VKD--KLNDPIVLAPDKGALEFAKTASKILNAE 180 (284)
T ss_dssp HTT--TCSSCEEEESSGGGHHHHHHHHHHHTCC
T ss_pred HHH--CCCCCEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 984--5898699997677699999999981999
No 6
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Probab=1.00 E-value=1 Score=324.05 Aligned_cols=184 Identities=24% Similarity=0.343 Sum_probs=176.5
Q ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCC--HHHHHHHHHHHHC
Q ss_conf 99679995389499999999771997032016755199997268983588899849999732894--4399999999743
Q 027833 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYAL 91 (218)
Q Consensus 14 ~~~~~i~~g~s~~~la~~Ia~~l~~~~~~~~~~~~FpDG~~E~~v~i~~~v~G~dV~Iv~s~~~~--d~imELlll~~al 91 (218)
.++++||+|+++++||++||++| |++++++++++|||| |.++++.+++||+||||+||+++| |++||||+++++|
T Consensus 7 ~~~~~i~~~~~~~~la~~ia~~l-g~~l~~~~~~~F~dG--E~~v~i~e~vrg~dv~iiqs~~~~~nd~lmell~~~~a~ 83 (317)
T 1dku_A 7 DKNLKIFSLNSNPELAKEIADIV-GVQLGKCSVTRFSDG--EVQINIEESIRGCDCYIIQSTSDPVNEHIMELLIMVDAL 83 (317)
T ss_dssp --CEEEEECSSCHHHHHHHHHHH-TCCCCCEEEEECTTS--CEEEEECSCCTTCEEEEECCCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHH-CCEEEEEEEEECCCC--CEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 79759998899889999999975-991475688888999--889971687779889998679999727899999999985
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 31799769999505888654235789972019999998706999989999799983780321011354434444451799
Q 027833 92 PRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPL 171 (218)
Q Consensus 92 r~~ga~~ItlViPYl~YsRQDR~~~~ge~isak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l~~~~~~~ 171 (218)
++++++++++|+||+||+||||++.+|++++++.+|++|+ .+|+|+++|+|+|++++++||+.|++++ .+.|.
T Consensus 84 ~~~~a~~i~av~pY~~yaRqd~K~~~r~~i~a~~~a~ll~-----~~g~~~vit~dlH~~q~~~~f~~p~d~l--~a~p~ 156 (317)
T 1dku_A 84 KRASAKTINIVIPYYGYARQDRKARSREPITAKLFANLLE-----TAGATRVIALDLHAPQIQGFFDIPIDHL--MGVPI 156 (317)
T ss_dssp HHTTCSEEEEEESSCTTTTCCSCSSTTCCCHHHHHHHHHH-----HHTCCEEEEESCSSGGGGGGCSSCEEEE--CSHHH
T ss_pred HCCCCCEEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHH-----HCCCCEEEEECCCCHHHHCCCCCCCEEE--EEHHH
T ss_conf 1158465999997526765664436997017999999999-----7077789996367466634037982289--86499
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 9999840999997899908964477999999981963
Q 027833 172 LKQRLHQLPDANNLLHFRMMEPGSDSTRCWIISLRWC 208 (218)
Q Consensus 172 l~~~l~~~~~~~~~vivaPD~Ga~~ra~~~a~~l~~~ 208 (218)
+++++++. +.++.++|+||.||+.+|+.+++.|+.-
T Consensus 157 l~~~l~~r-~~~~~vVv~pd~Gg~~~A~~la~~L~~p 192 (317)
T 1dku_A 157 LGEYFEGK-NLEDIVIVSPDHGGVTRARKLADRLKAP 192 (317)
T ss_dssp HHHHHHTT-TCCSEEEEESSGGGHHHHHHHHHHTTCC
T ss_pred HHHHHHHH-CCCCCEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 99999961-4798399985764699999999984998
No 7
>1dqn_A Guanine phosphoribosyltransferase; protein-inhibitor complex, Mg IONS, pyrophosphate, transition state analogue; HET: IMU; 1.75A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1dqp_A*
Probab=1.00 E-value=1 Score=64.71 Aligned_cols=81 Identities=9% Similarity=-0.059 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHCCCCCCCCCC-CCCCHHHHHHHHHHCCCC--CCEEEEECCCCCHH
Q ss_conf 201999999870699998999979998378032101135443444-445179999998409999--97899908964477
Q 027833 120 VATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPL-FETGIPLLKQRLHQLPDA--NNLLHFRMMEPGSD 196 (218)
Q Consensus 120 ~isak~va~lL~~~~~~~~G~d~vitvDlHs~~~~~~F~~~~~~l-~~~~~~~l~~~l~~~~~~--~~~vivaPD~Ga~~ 196 (218)
++|+|++|++|+ .+|.||++++| +++++|+..+..- .+.+...+++++.+.... +++++++|+.||..
T Consensus 4 ~i~~k~va~~l~-----~~~~dr~~~~d----qi~~~~~vlis~~~I~~~i~~LA~~I~~~~~~~~~~~vvVgi~~Gg~~ 74 (230)
T 1dqn_A 4 SVTGKPVKDVLS-----TFFKDRNDVLE----SEVKKFHLLATFEECKALAADTARRMNEYYKDVAEPVTLVALLTGAYL 74 (230)
T ss_dssp TTTCCBHHHHHH-----HHTTTCSSSCG----GGGGGCEEEECHHHHHHHHHHHHHHHHHHHTTCSSCEEEEEETTTHHH
T ss_pred EEEHHHHHHHHH-----HHCCCHHHHHH----HHHCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHH
T ss_conf 787999999999-----96875776788----751655284379999999999999999873677788499998988799
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 9999999819632
Q 027833 197 STRCWIISLRWCV 209 (218)
Q Consensus 197 ra~~~a~~l~~~~ 209 (218)
+|+.+++.|+.-+
T Consensus 75 ~a~~La~~L~~p~ 87 (230)
T 1dqn_A 75 YASLLTVHLTFPY 87 (230)
T ss_dssp HHHHHHTTCCSCE
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999739994
No 8
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1
Probab=1.00 E-value=1 Score=47.64 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCEE-EEEECCCCCCCEEEEEEECCCC-HHHHHHHHHHHHCCCCCCCEE
Q ss_conf 8949999999977199703201675519999726-8983588899849999732894-439999999974331799769
Q 027833 23 VECEELARKVAAQSDLITLQSINWRNFADGWPNL-YINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFVASF 99 (218)
Q Consensus 23 ~s~~~la~~Ia~~l~~~~~~~~~~~~FpDG~~E~-~v~i~~~v~G~dV~Iv~s~~~~-d~imELlll~~alr~~ga~~I 99 (218)
.+.-.+|..+|+.| +.++..+.-.+.+.| +. .++ ...+.|++|+||-.+.+. ..+.+ .+..+++.|++.+
T Consensus 77 ~~g~~~a~~la~~l-~~p~~~~rk~~~~~g--~~~~i~-g~~~~gk~VliVDDvitTG~Tl~~---a~~~L~~~Ga~~v 148 (211)
T 2aee_A 77 TAGIPHGAIIADKM-TLPFAYIRSKPKDHG--AGNQIE-GRVLKGQKMVIIEDLISTGGSVLD---AAAAASREGADVL 148 (211)
T ss_dssp TTTHHHHHHHHHHH-TCCEEEECSSCC------CCSEE-SCCCTTCEEEEEEEEESSCHHHHH---HHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHH-CCCEEEEEEECCCCC--CCCEEC-CCCCCCCEEEEEEECCCCHHHHHH---HHHHHHHCCCCEE
T ss_conf 67699999999982-989899996047767--745005-777895999999611245099999---9999997799399
No 9
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=1.00 E-value=1 Score=39.63 Aligned_cols=137 Identities=7% Similarity=0.000 Sum_probs=91.6
Q ss_pred CCEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEE-EEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 9679995389499999999771997032016755199997268-983588899849999732894439999999974331
Q 027833 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLY-INSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPR 93 (218)
Q Consensus 15 ~~~~i~~g~s~~~la~~Ia~~l~~~~~~~~~~~~FpDG~~E~~-v~i~~~v~G~dV~Iv~s~~~~d~imELlll~~alr~ 93 (218)
..+++-.-.++..+|..+|+.| +.++..+.-.+-..| +.. ..+..++.|++|+|+-.+.+... -+...+.++++
T Consensus 164 ~~vVVspd~Ggv~~A~~lA~~L-~~~~~~i~K~r~~~~--~v~~~~l~g~v~gk~viIVDDii~TG~--Tl~~a~~~L~~ 238 (326)
T 3s5j_B 164 NCTIVSPDAGGAKRVTSIADRL-NVDFALIHKERKKAN--EVDRMVLVGDVKDRVAILVDDMADTCG--TICHAADKLLS 238 (326)
T ss_dssp GCEEEESSGGGHHHHHHHHHHH-TCEEEEEEEC---------CCEEEESCCTTSEEEEEEEEESSCH--HHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHC-CCCEEEEEEEECCCC--EEEEEECCCCCCCCEEEEECCCCCCCH--HHHHHHHHHHH
T ss_conf 8199998877459999999981-999899999824888--044775145679999999815458757--99999999997
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCC--HHHHCCCCCCCCCCCCCCHHH
Q ss_conf 799769999505888654235789972019999998706999989999799983780--321011354434444451799
Q 027833 94 LFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHA--LQERFYFSDHVLPLFETGIPL 171 (218)
Q Consensus 94 ~ga~~ItlViPYl~YsRQDR~~~~ge~isak~va~lL~~~~~~~~G~d~vitvDlHs--~~~~~~F~~~~~~l~~~~~~~ 171 (218)
.||++|.++...= .++...+.++-+ .+++.+++.|-.- +..... ..+..+ +..++
T Consensus 239 ~Ga~~v~~~~tH~-------------v~~~~a~e~l~~------~~i~~vv~t~tip~~~~~~~~--~k~~~l--sva~l 295 (326)
T 3s5j_B 239 AGATRVYAILTHG-------------IFSGPAISRINN------ACFEAVVVTNTIPQEDKMKHC--SKIQVI--DISMI 295 (326)
T ss_dssp TTCSEEEEEEEEE-------------CCCTTHHHHHHH------SCCSEEEEETTSCCHHHHHTC--TTEEEE--CCHHH
T ss_pred CCCCEEEEEEEEC-------------CCCCHHHHHHHH------CCCCEEEEECCCCCHHHHCCC--CCEEEE--ECHHH
T ss_conf 4998799999932-------------568449999863------799999992687783561447--983999--81899
Q ss_pred HHHHHHHC
Q ss_conf 99998409
Q 027833 172 LKQRLHQL 179 (218)
Q Consensus 172 l~~~l~~~ 179 (218)
+++.+++.
T Consensus 296 la~aI~~i 303 (326)
T 3s5j_B 296 LAEAIRRT 303 (326)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999998
No 10
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=1.00 E-value=1 Score=39.25 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=89.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEE-EEECCCCCCCEEEEEEECCCC-HHHHHHHHHHHHCC
Q ss_conf 9679995389499999999771997032016755199997268-983588899849999732894-43999999997433
Q 027833 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLY-INSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALP 92 (218)
Q Consensus 15 ~~~~i~~g~s~~~la~~Ia~~l~~~~~~~~~~~~FpDG~~E~~-v~i~~~v~G~dV~Iv~s~~~~-d~imELlll~~alr 92 (218)
..+++-.-.+...+|..+|+.| +.++..+.-.+-..| +.. ..+..++.|++|+|+-.+.+. ..+ ...+.+++
T Consensus 167 ~~vVVspd~Ggv~~A~~lA~~L-~~p~~~i~K~r~~~~--~v~~~~i~g~v~gk~viiVDDii~TG~Tl---~~a~~~L~ 240 (319)
T 3dah_A 167 DLLVVSPDVGGVVRARALAKQL-NCDLAIIDKRRPKAN--VAEVMNIIGEVEGRTCVIMDDMVDTAGTL---CKAAQVLK 240 (319)
T ss_dssp TEEEECCSSTTHHHHHHHHHHT-TCEEEC----------------------CCSEEEEEEEEESSCHHH---HHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHH-CCCEEEEEEEECCCC--CEEEEECCCCCCCCEEEEEECCCCCHHHH---HHHHHHHH
T ss_conf 8589996787508999999986-999899999822677--06789754467899999990314855999---99999999
Q ss_pred CCCCCEEEEEE--ECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEC--CCHHHHCCCCCCCCCCCCCC
Q ss_conf 17997699995--058886542357899720199999987069999899997999837--80321011354434444451
Q 027833 93 RLFVASFTLVL--PFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDI--HALQERFYFSDHVLPLFETG 168 (218)
Q Consensus 93 ~~ga~~ItlVi--PYl~YsRQDR~~~~ge~isak~va~lL~~~~~~~~G~d~vitvDl--Hs~~~~~~F~~~~~~l~~~~ 168 (218)
+.||++|.++. |-|. ...+.++ + ..+++.+++.|- |.++.... .++..+ +.
T Consensus 241 ~~Ga~~v~~~~tH~v~s---------------~~a~~~l-~-----~~~i~~vv~t~tip~~~~~~~~--~k~~~l--sv 295 (319)
T 3dah_A 241 ERGAKQVFAYATHPVLS---------------GGAADRI-A-----ASALDELVVTDTIPLSAESLAC--PKIRAL--SS 295 (319)
T ss_dssp HTTCSCEEEEEEEECCC---------------TTHHHHH-H-----TSSCSEEEEESSSCCCHHHHHC--TTEEEE--CC
T ss_pred HCCCCEEEEEEEEECCC---------------HHHHHHH-H-----HCCCCEEEEECCCCCCHHHCCC--CCEEEE--EC
T ss_conf 75998799999940479---------------2799999-7-----5799989994466581454247--873999--81
Q ss_pred HHHHHHHHHHC
Q ss_conf 79999998409
Q 027833 169 IPLLKQRLHQL 179 (218)
Q Consensus 169 ~~~l~~~l~~~ 179 (218)
.+++++.+++.
T Consensus 296 a~lla~aI~~i 306 (319)
T 3dah_A 296 AGLLAETFSRI 306 (319)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 89999999998
Done!