Query 027834
Match_columns 218
No_of_seqs 114 out of 1152
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 18:14:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027834.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2201-2205//hhsearch_pdb/027834hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yby_A Translation elongation 1.0 1 1 402.2 20.2 164 50-213 23-186 (215)
2 3tre_A EF-P, elongation factor 1.0 1 1 379.7 18.0 158 56-213 4-161 (191)
3 3a5z_B EF-P, elongation factor 1.0 1 1 378.8 13.7 157 58-214 6-162 (191)
4 1ueb_A EF-P, TT0860, elongatio 1.0 1 1 376.6 22.0 155 58-213 1-155 (184)
5 3oyy_A EF-P, elongation factor 1.0 1 1 374.7 20.8 156 57-213 3-160 (191)
6 1bkb_A Translation initiation 1.0 1 1 255.0 17.9 127 54-180 4-132 (136)
7 1iz6_A Initiation factor 5A; S 1.0 1 1 247.4 17.5 122 57-178 5-129 (138)
8 3cpf_A Eukaryotic translation 1.0 1 1 244.2 15.0 119 56-174 4-126 (138)
9 2eif_A IF-5A, protein (eukaryo 1.0 1 1 238.7 17.5 119 57-178 9-128 (136)
10 3er0_A Eukaryotic translation 1.0 1 1 237.9 10.0 126 56-181 28-161 (167)
No 1
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=1.00 E-value=1 Score=402.22 Aligned_cols=164 Identities=26% Similarity=0.444 Sum_probs=162.2
Q ss_pred CEEEEEEEEEECCCCCCCCEEEECCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEEEEEEEEE
Q ss_conf 20352023376487789649999991899999477407998706778996479998798986698717843577667899
Q 027834 50 SATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTC 129 (218)
Q Consensus 50 ~~~~~R~vmi~asdiRkG~~I~~~G~py~Vl~~~~~kpGkG~A~vr~klknL~TG~~~e~~f~s~dkvE~v~ie~k~~qy 129 (218)
|++|.|++|+++++||+|++|+++|+||+|++++|+|||||+|++|+|+|||.||+++|++|+++|++|.|+++++++||
T Consensus 23 ~~~~~rg~Mi~a~dlKkG~~I~idG~p~~Vve~~hvKPGKG~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~~Qy 102 (215)
T 1yby_A 23 SLYKKAGLMISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQY 102 (215)
T ss_dssp --------CEEGGGCCTTCEEEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEEE
T ss_pred HHHHHCCEEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCEEECCEEEEEEEEE
T ss_conf 56631777988644568899999999999999998708999659999999988999899997799987615598878999
Q ss_pred EEEECCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCE
Q ss_conf 99739969994179952000680123213310579989999998998989948984999999817987786688995038
Q 027834 130 LYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYGPT 209 (218)
Q Consensus 130 lY~Dgd~~vFMD~ETyEQi~i~~~~lg~~~~fL~Eg~~v~V~~~eg~~i~v~LP~~V~l~V~etep~vKGdTat~~~KpA 209 (218)
||.|||.|+|||+|||||+++|++.+|++.+||+|||+|+|++|+|+||+|+||++|+|+|+||+||+|||||++++|||
T Consensus 103 lY~Dgd~y~FMD~ETyEQi~l~~~~lgd~~~fLkEg~~v~v~~~~g~~i~velP~~V~l~V~eteP~vkGdTa~~~~KpA 182 (215)
T 1yby_A 103 LYNDGDLYYFMDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEVTDTEPGFKGDTATGATKPA 182 (215)
T ss_dssp EEEETTEEEEECTTTCCEEEEEHHHHTTTTTTCCTTCEEEEEEETTEEEEEECCSEEEEEEEEC-------CCSCCEEEE
T ss_pred EEECCCEEEECCCCCCEEEEECHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCE
T ss_conf 99679989994499873589257895368833889999999999999999989987999999859986663567997608
Q ss_pred EEEE
Q ss_conf 9984
Q 027834 210 ISKH 213 (218)
Q Consensus 210 tLe~ 213 (218)
+|||
T Consensus 183 ~leT 186 (215)
T 1yby_A 183 IVET 186 (215)
T ss_dssp EETT
T ss_pred EEEC
T ss_conf 9908
No 2
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=1.00 E-value=1 Score=379.68 Aligned_cols=158 Identities=22% Similarity=0.327 Sum_probs=156.1
Q ss_pred EEEEECCCCCCCCEEEECCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEEEEEEEEEEEEECC
Q ss_conf 23376487789649999991899999477407998706778996479998798986698717843577667899997399
Q 027834 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (218)
Q Consensus 56 ~vmi~asdiRkG~~I~~~G~py~Vl~~~~~kpGkG~A~vr~klknL~TG~~~e~~f~s~dkvE~v~ie~k~~qylY~Dgd 135 (218)
.+|+++++||+|++|+++|+||+|++++|+|||||+|++|+++|||.||++++++|+++|++|.++++++++||||.||+
T Consensus 4 m~m~~a~dlkkG~~I~~dG~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd 83 (191)
T 3tre_A 4 MATHSTNEFRGGLKVMVDGDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYNDGE 83 (191)
T ss_dssp --CEEGGGCCTTCEEEETTEEEEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEETTCEECBCCEEEEEEEEEEECSS
T ss_pred EEEEEHHHCCCCCEEEECCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCEEEECEEEEEEEEEEEECCC
T ss_conf 27878887779889999999999999887528899439999999988999899995799989753188878899997699
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCEEEEE
Q ss_conf 699941799520006801232133105799899999989989899489849999998179877866889950389984
Q 027834 136 TAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYGPTISKH 213 (218)
Q Consensus 136 ~~vFMD~ETyEQi~i~~~~lg~~~~fL~Eg~~v~V~~~eg~~i~v~LP~~V~l~V~etep~vKGdTat~~~KpAtLe~ 213 (218)
.|+|||+|||||+++|++.+|++.+||+|||+|+|.+|+|+||+|+||++|+|+|+||+|++|||||++++|||+|||
T Consensus 84 ~~~FMD~etyEq~~l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~let 161 (191)
T 3tre_A 84 FWHFMTSENYEQHAASKEAVAEAKQWLKEEALCMVTMWNGVPLSVEPPNFVELKITETEPGVRGDTATGGTKRAKLET 161 (191)
T ss_dssp CEEEEESSSCCEEEECHHHHGGGGGGCCTTCEEEEEEETTEEEEEECCSCC---------------------------
T ss_pred CEEECCCCCHHHEECCHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCEEEEEC
T ss_conf 489925896673356555755588358899999999999999999899989999999589875645689867699938
No 3
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=1.00 E-value=1 Score=378.81 Aligned_cols=157 Identities=25% Similarity=0.380 Sum_probs=154.5
Q ss_pred EEECCCCCCCCEEEECCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEEEEEEEEEEEEECCEE
Q ss_conf 37648778964999999189999947740799870677899647999879898669871784357766789999739969
Q 027834 58 KVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTA 137 (218)
Q Consensus 58 mi~asdiRkG~~I~~~G~py~Vl~~~~~kpGkG~A~vr~klknL~TG~~~e~~f~s~dkvE~v~ie~k~~qylY~Dgd~~ 137 (218)
.+++|+||+|++|+++|+||+|++++|+|||||+|++|+++|||.||+++|++|+++|++|.|+++++++||||.||+.|
T Consensus 6 ~~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~~ 85 (191)
T 3a5z_B 6 TYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFW 85 (191)
T ss_dssp CEESTTCCTTCEEEETTEEEEEEEEEEECCTTCCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEECSSCE
T ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEECCCEE
T ss_conf 53689777888999999999999999883888867999999998899989999789998976479988999999479989
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEE
Q ss_conf 99417995200068012321331057998999999899898994898499999981798778668899503899840
Q 027834 138 FVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYGPTISKHI 214 (218)
Q Consensus 138 vFMD~ETyEQi~i~~~~lg~~~~fL~Eg~~v~V~~~eg~~i~v~LP~~V~l~V~etep~vKGdTat~~~KpAtLe~~ 214 (218)
+|||+|||||+++|++.+|++.+||+|||+|++++|+|+||+|+||++|+|+|+||+||+|||||++++|||+|||-
T Consensus 86 ~FMD~etyeQ~~l~~~~lgd~~~~l~e~~~v~v~~~~g~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG 162 (191)
T 3a5z_B 86 HFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTG 162 (191)
T ss_dssp EEECTTTCCEEEECHHHHCTTTTTCCSSEECEEEEETTEEEEEECCSCCCCCCC-----------------------
T ss_pred EEEECCCCEEEECCHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEECC
T ss_conf 99508987378816899656885468999999999999989998998799999995998766256799761899089
No 4
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=1.00 E-value=1 Score=376.64 Aligned_cols=155 Identities=25% Similarity=0.541 Sum_probs=153.7
Q ss_pred EEECCCCCCCCEEEECCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEEEEEEEEEEEEECCEE
Q ss_conf 37648778964999999189999947740799870677899647999879898669871784357766789999739969
Q 027834 58 KVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTA 137 (218)
Q Consensus 58 mi~asdiRkG~~I~~~G~py~Vl~~~~~kpGkG~A~vr~klknL~TG~~~e~~f~s~dkvE~v~ie~k~~qylY~Dgd~~ 137 (218)
|+++|+||+|++|+++|+||+|++++|+|||||+|++|+++|||.||+++|++|+++|++|.|+++++++||||.||+.|
T Consensus 1 mi~a~dlkkG~~i~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~~ 80 (184)
T 1ueb_A 1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGEEM 80 (184)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEEEETTSCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEETTEE
T ss_pred CCCHHHCCCCCEEEECCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEECCCEE
T ss_conf 95166357889999999999999988744898954999999998999989999779998873459988899999479979
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCEEEEE
Q ss_conf 9941799520006801232133105799899999989989899489849999998179877866889950389984
Q 027834 138 FVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYGPTISKH 213 (218)
Q Consensus 138 vFMD~ETyEQi~i~~~~lg~~~~fL~Eg~~v~V~~~eg~~i~v~LP~~V~l~V~etep~vKGdTat~~~KpAtLe~ 213 (218)
+|||+|||||+++|++.+|++ +||+|||+|+|++|+|+||+|+||++|+|+|+||+||+|||||++++|||+|||
T Consensus 81 ~FMD~etyeq~~l~~~~lgd~-~~L~eg~~v~v~~~~g~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~let 155 (184)
T 1ueb_A 81 VFMDLETYEQFAVPRSRVVGA-EFFKEGMTALGDMYEGQPIKVTPPTVVELKVVDTPPGVRGDTVSGGSKPATLET 155 (184)
T ss_dssp EEEETTTCCEEEEEGGGBTTG-GGCCTTCEEEEEEETTEEEEEECCSEEEEEEEECCSSSCCSSSSCSEEEEEETT
T ss_pred EEEECCCCEEEECCHHHCCHH-HHCCCCCEEEEEEECCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEECC
T ss_conf 992189862688377992813-324799999999999999999899979999998289876645678876389848
No 5
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=1.00 E-value=1 Score=374.66 Aligned_cols=156 Identities=20% Similarity=0.358 Sum_probs=154.5
Q ss_pred EEEECCCCCCCCEEEECCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEEEEEEEEEEEEECCE
Q ss_conf 33764877896499999918999994774079987067789964799987989866987178435776678999973996
Q 027834 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDT 136 (218)
Q Consensus 57 vmi~asdiRkG~~I~~~G~py~Vl~~~~~kpGkG~A~vr~klknL~TG~~~e~~f~s~dkvE~v~ie~k~~qylY~Dgd~ 136 (218)
.|+++|+||+|++|+++|+||+|++++|+|||||+|++|+++|||.||++++++|+++|++|.++++++++||||.||+.
T Consensus 3 ~m~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd~ 82 (191)
T 3oyy_A 3 SMKTAQEFRAGQVANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPL 82 (191)
T ss_dssp CCEEGGGCCTTCEEEETTEEEEEEEEEEECCTTSCCEEEEEEEETTTCCEEEEEEETTCEEEECCCEEEEEEEEEECSSS
T ss_pred CCCCHHHCCCCCEEEECCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEECCCE
T ss_conf 45668767788999999999999998960188895799999999889998999967999898521888788999946999
Q ss_pred EEEECCCCCCCCCCCCHHHHHHHHHCCCCCE--EEEEEECCEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCEEEEE
Q ss_conf 9994179952000680123213310579989--9999989989899489849999998179877866889950389984
Q 027834 137 AFVIESETFEQLEVPLDVFGKAGAYLQEGMK--VWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYGPTISKH 213 (218)
Q Consensus 137 ~vFMD~ETyEQi~i~~~~lg~~~~fL~Eg~~--v~V~~~eg~~i~v~LP~~V~l~V~etep~vKGdTat~~~KpAtLe~ 213 (218)
|+||| |||||+++|++.+|++.+||+|||+ |+|.+|+|+||+|+||++|+|+|+||+|++|||||++++|||+|||
T Consensus 83 ~~FMD-etyEq~~l~~~~lgd~~~~L~eg~~~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~let 160 (191)
T 3oyy_A 83 YVFMD-SEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNN 160 (191)
T ss_dssp EEEEE-TTCCEEEECGGGCTTTGGGCCTTCCCCEEEEEETTEEEEEECCSEEEEEEEEECCCCSCCCC--CEEEEEETT
T ss_pred EEEEE-CCHHHEECCHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCEEEEEC
T ss_conf 99972-6844300776786568855838997699999999999999899989999999689865545679876499948
No 6
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=1.00 E-value=1 Score=255.02 Aligned_cols=127 Identities=19% Similarity=0.241 Sum_probs=121.6
Q ss_pred EEEEEEECCCCCCCCEEEECCEEEEEEEEEEEECCCC-CEEEEEEEEECCCCCEEEEEECCCCCEEEEEEEEEEEEEEEE
Q ss_conf 2023376487789649999991899999477407998-706778996479998798986698717843577667899997
Q 027834 54 QRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRG-GAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYT 132 (218)
Q Consensus 54 ~R~vmi~asdiRkG~~I~~~G~py~Vl~~~~~kpGkG-~A~vr~klknL~TG~~~e~~f~s~dkvE~v~ie~k~~qylY~ 132 (218)
++...+++++||+|++|+++|+||+|++++|+||||| +|++|+++|||.||+++|.+|++++++|.|+++++++||||.
T Consensus 4 ~~t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~~qylY~ 83 (136)
T 1bkb_A 4 MSTKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSV 83 (136)
T ss_dssp CCCEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEE
T ss_pred EEEEEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEECEEEEEEEEEEEE
T ss_conf 28999899996588999999999999999976599887559999999978998699997699876403199878999994
Q ss_pred ECCEEEEECCCCCCCCCCCCHH-HHHHHHHCCCCCEEEEEEECCEEEEE
Q ss_conf 3996999417995200068012-32133105799899999989989899
Q 027834 133 ENDTAFVIESETFEQLEVPLDV-FGKAGAYLQEGMKVWLQLYDGRALSG 180 (218)
Q Consensus 133 Dgd~~vFMD~ETyEQi~i~~~~-lg~~~~fL~Eg~~v~V~~~eg~~i~v 180 (218)
||+.|+|||+|||||++++.+. +|++.+||+||++|+|++|+|++.-+
T Consensus 84 dg~~~~fMD~etyeq~~l~~~~~~gd~~~~l~e~~~v~v~~~~g~~~~~ 132 (136)
T 1bkb_A 84 SGDVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEVWQILDRYKII 132 (136)
T ss_dssp CSSEEEEEETTTCCEEEEEGGGBCHHHHTTCCTTCEEEEEEETTEEEEE
T ss_pred CCCEEEEEECCCCEEEEECCCCCHHHHHHHCCCCCEEEEEEECCEEEEE
T ss_conf 6999999868997088813544654899647899999999999999989
No 7
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=1.00 E-value=1 Score=247.37 Aligned_cols=122 Identities=25% Similarity=0.318 Sum_probs=118.2
Q ss_pred EEEECCCCCCCCEEEECCEEEEEEEEEEEECCC-CCEEEEEEEEECCCCCEEEEEECCCCCEEEEEEEEEEEEEEEEECC
Q ss_conf 337648778964999999189999947740799-8706778996479998798986698717843577667899997399
Q 027834 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (218)
Q Consensus 57 vmi~asdiRkG~~I~~~G~py~Vl~~~~~kpGk-G~A~vr~klknL~TG~~~e~~f~s~dkvE~v~ie~k~~qylY~Dgd 135 (218)
..+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||.||++++.+|++++++|.|+++++++||||.||+
T Consensus 5 ~~i~a~~lkkG~~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qylY~dg~ 84 (138)
T 1iz6_A 5 TKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAITPD 84 (138)
T ss_dssp EEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEECSS
T ss_pred EEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEECEEEEEEEEEEEECCC
T ss_conf 99899996689999999999999997852698777559999999978998899995699788403498779999994799
Q ss_pred EEEEECCCCCCCCCC--CCHHHHHHHHHCCCCCEEEEEEECCEEE
Q ss_conf 699941799520006--8012321331057998999999899898
Q 027834 136 TAFVIESETFEQLEV--PLDVFGKAGAYLQEGMKVWLQLYDGRAL 178 (218)
Q Consensus 136 ~~vFMD~ETyEQi~i--~~~~lg~~~~fL~Eg~~v~V~~~eg~~i 178 (218)
.|+|||+|||||+++ |.+.+|++.+||+||++|+|+++.|+..
T Consensus 85 ~~~fMD~etyeq~~l~~~~~~lgd~~~~l~e~~~V~v~~~~G~~~ 129 (138)
T 1iz6_A 85 TVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGRIK 129 (138)
T ss_dssp EEEEECTTTCCEEEEEHHHHBCGGGTTTCCTTCEEEEEEETTEEE
T ss_pred EEEEEECCCCCEEEEECCHHHHHHHHHHCCCCCEEEEEEECCCEE
T ss_conf 999996999806784089889889997577999999999999297
No 8
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=244.24 Aligned_cols=119 Identities=13% Similarity=0.190 Sum_probs=114.6
Q ss_pred EEEEECCCCCCCCEEEECCEEEEEEEEEEEECCCC-CEEEEEEEEECCCCCEEEEEECCCCCEEEEEEEEEEEEEEEEEC
Q ss_conf 23376487789649999991899999477407998-70677899647999879898669871784357766789999739
Q 027834 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRG-GAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEN 134 (218)
Q Consensus 56 ~vmi~asdiRkG~~I~~~G~py~Vl~~~~~kpGkG-~A~vr~klknL~TG~~~e~~f~s~dkvE~v~ie~k~~qylY~Dg 134 (218)
...+++++||+|++|+++|+||.|++++|+||||| +|++|+++|||.||+++|++|++++++|.|+++++++||||.||
T Consensus 4 t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~kve~~~v~~~~~qyly~dg 83 (138)
T 3cpf_A 4 TFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQD 83 (138)
T ss_dssp EEEEEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEET
T ss_pred CEEEEHHHCCCCCEEEECCEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEEEECC
T ss_conf 28989999758889999999999999774169988647999999998899879999679998986579988999999669
Q ss_pred CEEEEECCCCCCCCC--CCCHHHHHHH-HHCCCCCEEEEEEEC
Q ss_conf 969994179952000--6801232133-105799899999989
Q 027834 135 DTAFVIESETFEQLE--VPLDVFGKAG-AYLQEGMKVWLQLYD 174 (218)
Q Consensus 135 d~~vFMD~ETyEQi~--i~~~~lg~~~-~fL~Eg~~v~V~~~e 174 (218)
+.|+|||+|||||++ +|.+.+|++. +||+||++|.|.+|+
T Consensus 84 ~~~~fMD~etyeq~~l~l~~~~lgd~~~~~l~eg~~v~V~~~~ 126 (138)
T 3cpf_A 84 GYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLS 126 (138)
T ss_dssp TEEEEECTTSCEECCSBCCSHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred CEEEEECCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEH
T ss_conf 9789984999727660389899999999885089999999991
No 9
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=1.00 E-value=1 Score=238.68 Aligned_cols=119 Identities=21% Similarity=0.249 Sum_probs=115.1
Q ss_pred EEEECCCCCCCCEEEECCEEEEEEEEEEEECCC-CCEEEEEEEEECCCCCEEEEEECCCCCEEEEEEEEEEEEEEEEECC
Q ss_conf 337648778964999999189999947740799-8706778996479998798986698717843577667899997399
Q 027834 57 VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEND 135 (218)
Q Consensus 57 vmi~asdiRkG~~I~~~G~py~Vl~~~~~kpGk-G~A~vr~klknL~TG~~~e~~f~s~dkvE~v~ie~k~~qylY~Dgd 135 (218)
.-+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||.||+++|.+|++++++|.|.++++++||||.||+
T Consensus 9 ~~i~~~~lr~G~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qyly~dg~ 88 (136)
T 2eif_A 9 KQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLAIMGD 88 (136)
T ss_dssp EEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEEEETT
T ss_pred EEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEECCCCEEEEEEEEEEECCC
T ss_conf 99898987699999999999999998865699778659999999968998689996399774224083058999996699
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCEEE
Q ss_conf 6999417995200068012321331057998999999899898
Q 027834 136 TAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL 178 (218)
Q Consensus 136 ~~vFMD~ETyEQi~i~~~~lg~~~~fL~Eg~~v~V~~~eg~~i 178 (218)
.|+|||+|||||++++.+ |++.+ |+||++|+|++|.|++.
T Consensus 89 ~~~fMD~etyeq~~l~~~--gd~~~-l~e~~~v~v~~~~G~~~ 128 (136)
T 2eif_A 89 MVQIMDLQTYETLELPIP--EGIEG-LEPGGEVEYIEAVGQYK 128 (136)
T ss_dssp EEEEEETTTCCEEEEECC--SCCTT-CSTTCEEEEEEETTEEE
T ss_pred EEEEEECCCCEEEEECCC--CCHHH-CCCCCEEEEEEECCEEE
T ss_conf 999986899628885488--74651-79999999999999897
No 10
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=237.93 Aligned_cols=126 Identities=17% Similarity=0.279 Sum_probs=117.9
Q ss_pred EEEEECCCCCCCCEEEECCEEEEEEEEEEEECCC-CCEEEEEEEEECCCCCEEEEEECCCCCEEEEEEEEEEEEEEEEEC
Q ss_conf 2337648778964999999189999947740799-870677899647999879898669871784357766789999739
Q 027834 56 AVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGR-GGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTEN 134 (218)
Q Consensus 56 ~vmi~asdiRkG~~I~~~G~py~Vl~~~~~kpGk-G~A~vr~klknL~TG~~~e~~f~s~dkvE~v~ie~k~~qylY~Dg 134 (218)
..-+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||.||+++|++|++++++|.|.++++++||||.||
T Consensus 28 t~pi~a~dlrkG~~I~idG~p~~Vve~~~~KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~kve~~~ver~~~QyLY~dg 107 (167)
T 3er0_A 28 TYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDIDD 107 (167)
T ss_dssp CEEEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSEEEECCCCEEEEECCCCTT
T ss_pred EEEEEHHHCCCCCEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEEEEEEECC
T ss_conf 27889999659889999998899999887379986746999999996789889999738873120348886689999729
Q ss_pred CEEEEEC--CCCCCCCCCCCHHHHHHH-HHCCCCCEEEEEEEC--C--EEEEEE
Q ss_conf 9699941--799520006801232133-105799899999989--9--898994
Q 027834 135 DTAFVIE--SETFEQLEVPLDVFGKAG-AYLQEGMKVWLQLYD--G--RALSGS 181 (218)
Q Consensus 135 d~~vFMD--~ETyEQi~i~~~~lg~~~-~fL~Eg~~v~V~~~e--g--~~i~v~ 181 (218)
+.|+||| .+||||+.||++.+|++. .||+||++|.|.+|+ | +++++.
T Consensus 108 ~~~~FMD~~~etyeqi~l~~~~lgd~i~~~l~eg~~v~V~~~~~mg~e~i~~~k 161 (167)
T 3er0_A 108 GFLSLMNMDGDTKDDVKAPEGELGDSLQTAFDEGKDLMVTIISAMGEEAAISFK 161 (167)
T ss_dssp TTCCCCCSSSCCCSCCCCCCSSHHHHHHHTTSSCCCCEEEEEEETTEEEEEEEC
T ss_pred CEEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEHHCCCEEEEEEE
T ss_conf 999998289980478885989999999988518999999999138918999999
Done!