Query 027835
Match_columns 218
No_of_seqs 163 out of 1321
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 15:56:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1718 Dual specificity phosp 100.0 6E-33 1.3E-37 215.8 13.7 146 44-190 13-164 (198)
2 smart00195 DSPc Dual specifici 100.0 2.8E-32 6E-37 210.4 16.2 131 48-179 1-137 (138)
3 KOG1717 Dual specificity phosp 100.0 3.1E-31 6.6E-36 219.6 12.9 140 44-184 168-315 (343)
4 PF00782 DSPc: Dual specificit 100.0 2.9E-30 6.3E-35 197.7 13.7 124 56-180 1-133 (133)
5 KOG1716 Dual specificity phosp 100.0 3.6E-29 7.7E-34 215.5 18.9 182 6-188 25-223 (285)
6 cd00127 DSPc Dual specificity 100.0 5.1E-29 1.1E-33 191.7 15.4 130 48-178 2-139 (139)
7 PRK12361 hypothetical protein; 99.9 1.9E-25 4.2E-30 207.8 16.9 152 47-201 94-255 (547)
8 PTZ00242 protein tyrosine phos 99.9 8.7E-22 1.9E-26 157.0 15.1 135 49-185 12-162 (166)
9 KOG1719 Dual specificity phosp 99.9 7.5E-22 1.6E-26 151.9 11.8 137 50-187 27-176 (183)
10 PTZ00393 protein tyrosine phos 99.9 3.2E-21 7E-26 159.8 13.6 120 66-187 108-235 (241)
11 KOG1720 Protein tyrosine phosp 99.8 1.3E-18 2.8E-23 140.4 13.6 111 68-179 88-206 (225)
12 COG2453 CDC14 Predicted protei 99.6 3.8E-15 8.2E-20 120.3 11.8 90 89-178 69-164 (180)
13 PF03162 Y_phosphatase2: Tyros 99.5 4.3E-14 9.2E-19 112.5 10.3 135 46-185 5-154 (164)
14 TIGR01244 conserved hypothetic 99.5 1.8E-12 3.9E-17 100.0 12.8 114 49-165 3-129 (135)
15 KOG2836 Protein tyrosine phosp 99.4 4.2E-12 9.2E-17 96.1 11.6 113 67-181 34-156 (173)
16 PF05706 CDKN3: Cyclin-depende 99.4 2.4E-12 5.3E-17 101.4 7.6 90 65-154 62-168 (168)
17 smart00012 PTPc_DSPc Protein t 99.3 1.2E-11 2.7E-16 89.6 9.6 85 92-176 4-101 (105)
18 smart00404 PTPc_motif Protein 99.3 1.2E-11 2.7E-16 89.6 9.6 85 92-176 4-101 (105)
19 cd00047 PTPc Protein tyrosine 99.2 1.2E-10 2.7E-15 96.9 8.6 86 91-176 131-227 (231)
20 PF04273 DUF442: Putative phos 99.1 1.8E-10 4E-15 85.7 8.1 89 49-139 3-104 (110)
21 smart00194 PTPc Protein tyrosi 99.1 2.1E-10 4.6E-15 97.2 9.0 87 90-176 158-254 (258)
22 PLN02727 NAD kinase 99.0 1E-09 2.2E-14 105.5 10.2 95 55-149 262-370 (986)
23 KOG2283 Clathrin coat dissocia 98.9 6.1E-09 1.3E-13 94.2 7.7 140 40-180 20-173 (434)
24 COG5350 Predicted protein tyro 98.8 2.2E-08 4.8E-13 77.5 9.2 105 66-171 24-145 (172)
25 PRK15375 pathogenicity island 98.8 3.3E-08 7.1E-13 90.1 10.2 92 92-183 425-531 (535)
26 PF13350 Y_phosphatase3: Tyros 98.8 4.1E-08 8.9E-13 77.9 9.2 105 50-155 15-158 (164)
27 PF00102 Y_phosphatase: Protei 98.8 3.4E-08 7.5E-13 81.5 9.1 83 95-177 140-232 (235)
28 PHA02742 protein tyrosine phos 98.8 5.4E-08 1.2E-12 84.7 10.1 83 93-175 186-289 (303)
29 PHA02740 protein tyrosine phos 98.8 6.3E-08 1.4E-12 84.1 10.3 85 91-175 179-281 (298)
30 COG3453 Uncharacterized protei 98.7 1.4E-07 3.1E-12 70.2 10.4 110 49-161 4-126 (130)
31 PHA02746 protein tyrosine phos 98.7 6.8E-08 1.5E-12 84.8 8.7 83 93-175 205-307 (323)
32 PHA02747 protein tyrosine phos 98.6 1.6E-07 3.5E-12 82.1 9.0 54 121-174 230-288 (312)
33 KOG2386 mRNA capping enzyme, g 98.6 6.3E-08 1.4E-12 86.0 6.1 123 72-195 61-198 (393)
34 PHA02738 hypothetical protein; 98.5 4.5E-07 9.7E-12 79.6 9.3 84 92-175 181-287 (320)
35 KOG1572 Predicted protein tyro 98.5 1.2E-06 2.6E-11 72.6 11.1 114 43-160 55-187 (249)
36 KOG0792 Protein tyrosine phosp 98.3 2.1E-06 4.6E-11 83.4 8.7 85 93-177 1031-1125(1144)
37 COG2365 Protein tyrosine/serin 98.3 3.2E-06 7E-11 71.6 7.6 120 49-168 48-184 (249)
38 COG5599 PTP2 Protein tyrosine 98.2 1.9E-06 4.2E-11 72.5 5.2 91 92-182 187-294 (302)
39 PF04179 Init_tRNA_PT: Initiat 98.1 6.6E-05 1.4E-09 68.6 13.2 125 53-177 293-449 (451)
40 PF14566 PTPlike_phytase: Inos 98.0 1E-05 2.2E-10 63.4 4.9 54 90-144 90-148 (149)
41 KOG0790 Protein tyrosine phosp 98.0 3E-05 6.5E-10 69.6 7.8 82 93-174 417-513 (600)
42 KOG0789 Protein tyrosine phosp 97.9 3.5E-05 7.6E-10 69.3 7.6 86 92-177 266-362 (415)
43 PF14671 DSPn: Dual specificit 97.5 0.00045 9.7E-09 53.5 7.6 57 108-164 51-114 (141)
44 KOG0791 Protein tyrosine phosp 97.4 0.0011 2.5E-08 58.3 9.5 96 88-183 250-355 (374)
45 KOG4228 Protein tyrosine phosp 97.4 0.00046 1E-08 68.0 7.5 95 93-187 698-804 (1087)
46 KOG0793 Protein tyrosine phosp 97.0 0.0024 5.2E-08 60.5 7.5 83 93-175 895-988 (1004)
47 KOG4228 Protein tyrosine phosp 95.7 0.022 4.8E-07 56.6 6.3 57 120-176 1018-1079(1087)
48 KOG4471 Phosphatidylinositol 3 93.9 0.1 2.2E-06 49.0 5.1 36 108-143 362-398 (717)
49 cd01518 RHOD_YceA Member of th 93.1 0.37 7.9E-06 34.4 6.1 28 118-148 59-86 (101)
50 PF06602 Myotub-related: Myotu 89.8 0.76 1.6E-05 41.0 5.7 25 114-138 225-249 (353)
51 COG0607 PspE Rhodanese-related 88.2 1.2 2.5E-05 31.8 4.8 68 70-144 15-83 (110)
52 KOG1089 Myotubularin-related p 86.6 1.4 3.1E-05 41.5 5.4 29 110-138 333-362 (573)
53 PRK01415 hypothetical protein; 86.2 1 2.2E-05 38.2 4.1 28 118-148 169-196 (247)
54 cd01520 RHOD_YbbB Member of th 84.5 4.7 0.0001 30.1 6.7 30 117-148 83-112 (128)
55 cd01533 4RHOD_Repeat_2 Member 83.9 3.5 7.5E-05 29.7 5.5 64 76-148 27-91 (109)
56 cd01522 RHOD_1 Member of the R 82.0 6.1 0.00013 29.0 6.3 29 117-148 61-89 (117)
57 PRK05320 rhodanese superfamily 79.7 3.6 7.9E-05 35.0 4.9 27 119-148 174-200 (257)
58 PLN02160 thiosulfate sulfurtra 77.9 4.8 0.0001 30.6 4.7 30 117-149 78-107 (136)
59 PRK00142 putative rhodanese-re 77.3 3.1 6.8E-05 36.5 3.9 27 119-148 170-196 (314)
60 cd01528 RHOD_2 Member of the R 75.1 10 0.00022 26.7 5.6 28 119-149 57-84 (101)
61 PF03861 ANTAR: ANTAR domain; 74.3 6.4 0.00014 25.2 3.8 26 135-160 15-40 (56)
62 cd01523 RHOD_Lact_B Member of 73.7 12 0.00026 26.2 5.6 28 118-148 59-86 (100)
63 cd01448 TST_Repeat_1 Thiosulfa 71.4 9 0.00019 27.9 4.6 41 107-149 65-106 (122)
64 TIGR03865 PQQ_CXXCW PQQ-depend 69.5 12 0.00025 29.5 5.1 29 118-148 114-142 (162)
65 cd01529 4RHOD_Repeats Member o 69.4 7.4 0.00016 27.2 3.6 28 118-148 54-81 (96)
66 smart00400 ZnF_CHCC zinc finge 68.0 5.7 0.00012 25.2 2.5 32 124-157 23-54 (55)
67 PF11023 DUF2614: Protein of u 66.8 2.6 5.6E-05 31.2 0.8 41 7-47 69-110 (114)
68 cd01526 RHOD_ThiF Member of th 65.3 13 0.00028 27.3 4.4 28 118-148 70-97 (122)
69 PF02673 BacA: Bacitracin resi 61.7 9 0.00019 32.7 3.3 27 128-156 159-185 (259)
70 PRK10886 DnaA initiator-associ 60.7 24 0.00052 28.8 5.5 38 104-144 25-62 (196)
71 cd00729 rubredoxin_SM Rubredox 59.9 5.7 0.00012 22.9 1.2 23 9-31 4-27 (34)
72 PF04364 DNA_pol3_chi: DNA pol 59.3 20 0.00043 27.4 4.5 24 106-129 15-38 (137)
73 KOG4080 Mitochondrial ribosoma 59.2 3.6 7.8E-05 32.6 0.4 25 7-33 93-117 (176)
74 PRK12554 undecaprenyl pyrophos 58.2 9.5 0.00021 32.9 2.8 26 129-156 166-191 (276)
75 TIGR00753 undec_PP_bacA undeca 57.2 10 0.00022 32.3 2.8 26 129-156 160-185 (255)
76 PRK02935 hypothetical protein; 57.2 8.8 0.00019 28.1 2.1 36 9-44 72-108 (110)
77 PRK00281 undecaprenyl pyrophos 56.3 11 0.00024 32.3 2.9 26 129-156 164-189 (268)
78 cd01444 GlpE_ST GlpE sulfurtra 55.5 37 0.0008 23.2 5.1 29 117-148 53-81 (96)
79 PRK06646 DNA polymerase III su 54.6 30 0.00065 27.1 4.9 30 101-130 10-39 (154)
80 cd01532 4RHOD_Repeat_1 Member 54.6 23 0.00049 24.6 3.9 29 119-148 49-77 (92)
81 cd01531 Acr2p Eukaryotic arsen 54.5 40 0.00086 24.2 5.3 20 119-138 61-80 (113)
82 PRK11784 tRNA 2-selenouridine 53.8 52 0.0011 29.3 6.9 28 119-148 87-114 (345)
83 PF01807 zf-CHC2: CHC2 zinc fi 53.7 15 0.00033 26.2 2.9 36 124-161 54-89 (97)
84 TIGR02981 phageshock_pspE phag 53.2 44 0.00096 23.9 5.3 27 119-148 57-83 (101)
85 PF09419 PGP_phosphatase: Mito 53.0 49 0.0011 26.3 5.9 70 46-129 12-86 (168)
86 PRK10287 thiosulfate:cyanide s 52.9 42 0.00091 24.3 5.2 27 119-148 59-85 (104)
87 cd01443 Cdc25_Acr2p Cdc25 enzy 52.9 44 0.00095 24.0 5.3 18 120-137 66-83 (113)
88 TIGR03167 tRNA_sel_U_synt tRNA 52.2 49 0.0011 29.0 6.4 28 119-148 73-100 (311)
89 PF03668 ATP_bind_2: P-loop AT 51.9 27 0.00057 30.3 4.5 17 122-138 244-260 (284)
90 COG2179 Predicted hydrolase of 51.9 84 0.0018 25.2 6.9 60 65-136 18-78 (175)
91 TIGR00853 pts-lac PTS system, 51.6 15 0.00032 26.2 2.5 60 121-183 4-73 (95)
92 PF13344 Hydrolase_6: Haloacid 51.0 88 0.0019 22.3 7.4 71 103-175 13-96 (101)
93 PRK05728 DNA polymerase III su 50.8 25 0.00053 27.0 3.8 27 104-130 13-39 (142)
94 PRK00162 glpE thiosulfate sulf 50.6 63 0.0014 22.8 5.8 63 76-148 21-83 (108)
95 cd01534 4RHOD_Repeat_3 Member 50.4 25 0.00054 24.4 3.6 27 119-148 55-81 (95)
96 PF00581 Rhodanese: Rhodanese- 50.2 43 0.00092 23.3 4.9 33 116-149 63-98 (113)
97 COG2927 HolC DNA polymerase II 49.6 22 0.00047 27.7 3.3 22 108-129 17-38 (144)
98 KOG2017 Molybdopterin synthase 49.4 1.7E+02 0.0037 26.4 9.1 44 119-180 376-419 (427)
99 cd05567 PTS_IIB_mannitol PTS_I 48.9 21 0.00045 24.7 2.9 14 121-134 1-14 (87)
100 PF10302 DUF2407: DUF2407 ubiq 48.9 11 0.00023 27.3 1.4 11 120-130 85-95 (97)
101 PRK13938 phosphoheptose isomer 48.9 45 0.00097 27.1 5.2 40 103-145 28-67 (196)
102 PF13580 SIS_2: SIS domain; PD 48.6 47 0.001 25.0 5.1 34 103-139 18-51 (138)
103 COG1054 Predicted sulfurtransf 47.8 28 0.0006 30.4 4.0 77 51-132 105-184 (308)
104 cd01447 Polysulfide_ST Polysul 47.6 24 0.00053 24.5 3.2 29 117-148 58-86 (103)
105 cd01519 RHOD_HSP67B2 Member of 47.5 30 0.00066 24.2 3.7 28 118-148 64-91 (106)
106 cd01521 RHOD_PspE2 Member of t 46.1 44 0.00095 23.9 4.4 30 117-148 61-91 (110)
107 PRK05772 translation initiatio 46.0 37 0.00081 30.5 4.7 15 116-130 163-177 (363)
108 PRK05600 thiamine biosynthesis 45.6 21 0.00047 32.0 3.2 25 121-148 333-357 (370)
109 PRK05416 glmZ(sRNA)-inactivati 45.2 32 0.0007 29.8 4.1 18 122-139 247-264 (288)
110 cd01525 RHOD_Kc Member of the 44.9 35 0.00077 23.8 3.7 26 120-148 65-90 (105)
111 COG0794 GutQ Predicted sugar p 44.5 56 0.0012 26.9 5.1 37 109-148 28-64 (202)
112 COG1660 Predicted P-loop-conta 43.7 37 0.0008 29.3 4.1 17 122-138 245-261 (286)
113 PRK00414 gmhA phosphoheptose i 43.7 52 0.0011 26.5 4.9 33 103-138 27-59 (192)
114 COG0279 GmhA Phosphoheptose is 43.2 34 0.00073 27.4 3.5 30 104-136 25-54 (176)
115 PRK06036 translation initiatio 42.4 48 0.001 29.5 4.8 18 117-134 145-162 (339)
116 TIGR00512 salvage_mtnA S-methy 41.8 53 0.0012 29.1 5.0 14 117-130 140-157 (331)
117 PF09994 DUF2235: Uncharacteri 41.7 1.5E+02 0.0031 25.4 7.6 95 104-201 75-183 (277)
118 PF02132 RecR: RecR protein; 41.3 7.4 0.00016 23.3 -0.3 24 5-31 15-38 (41)
119 PRK09590 celB cellobiose phosp 40.3 27 0.00059 25.4 2.5 59 121-181 2-71 (104)
120 TIGR01460 HAD-SF-IIA Haloacid 40.0 1.5E+02 0.0033 24.3 7.3 72 105-177 15-99 (236)
121 TIGR01245 trpD anthranilate ph 39.9 71 0.0015 28.1 5.5 80 118-201 97-184 (330)
122 COG1968 BacA Undecaprenyl pyro 39.1 31 0.00067 29.7 3.0 26 129-156 165-190 (270)
123 cd00350 rubredoxin_like Rubred 38.4 22 0.00048 20.1 1.4 23 9-31 3-26 (33)
124 COG3707 AmiR Response regulato 37.3 36 0.00077 27.8 2.9 23 138-160 150-172 (194)
125 PF02302 PTS_IIB: PTS system, 37.0 31 0.00067 23.6 2.3 15 122-136 1-15 (90)
126 PRK11449 putative deoxyribonuc 36.7 47 0.001 28.1 3.8 55 105-159 112-172 (258)
127 COG0369 CysJ Sulfite reductase 36.1 2.9E+02 0.0062 26.6 9.2 56 106-161 520-577 (587)
128 PF13248 zf-ribbon_3: zinc-rib 35.8 27 0.00058 18.6 1.4 24 8-32 3-26 (26)
129 COG1831 Predicted metal-depend 35.2 1.7E+02 0.0037 25.3 6.8 98 49-159 5-108 (285)
130 PRK05720 mtnA methylthioribose 34.7 87 0.0019 27.9 5.2 16 117-132 144-159 (344)
131 cd01530 Cdc25 Cdc25 phosphatas 34.3 49 0.0011 24.4 3.1 26 117-144 65-91 (121)
132 KOG1004 Exosomal 3'-5' exoribo 34.0 95 0.0021 25.8 4.9 40 119-160 184-223 (230)
133 cd05006 SIS_GmhA Phosphoheptos 32.8 1.1E+02 0.0025 23.8 5.2 34 102-138 15-48 (177)
134 cd00158 RHOD Rhodanese Homolog 32.7 91 0.002 20.5 4.1 26 116-143 46-71 (89)
135 PRK09629 bifunctional thiosulf 32.5 70 0.0015 30.8 4.5 39 108-149 210-249 (610)
136 TIGR00615 recR recombination p 32.4 26 0.00057 28.6 1.4 27 4-33 50-76 (195)
137 PF13378 MR_MLE_C: Enolase C-t 32.0 72 0.0016 22.7 3.7 24 105-128 31-54 (111)
138 cd04445 DEP_PLEK1 DEP (Disheve 31.6 49 0.0011 24.0 2.5 35 119-158 23-58 (99)
139 PRK00076 recR recombination pr 31.4 28 0.0006 28.5 1.4 27 4-33 50-76 (196)
140 smart00488 DEXDc2 DEAD-like he 31.1 1.3E+02 0.0027 25.9 5.5 36 107-142 14-49 (289)
141 smart00489 DEXDc3 DEAD-like he 31.1 1.3E+02 0.0027 25.9 5.5 36 107-142 14-49 (289)
142 PRK07411 hypothetical protein; 30.3 66 0.0014 29.0 3.8 28 119-149 341-368 (390)
143 PF12921 ATP13: Mitochondrial 30.3 1.7E+02 0.0036 22.0 5.4 34 150-184 71-104 (126)
144 COG2126 RPL37A Ribosomal prote 30.2 27 0.00058 22.8 0.9 31 1-31 10-40 (61)
145 KOG1158 NADP/FAD dependent oxi 29.3 4E+02 0.0087 26.0 9.0 56 107-162 578-636 (645)
146 KOG1530 Rhodanese-related sulf 28.2 1E+02 0.0022 23.7 3.8 13 121-134 90-102 (136)
147 COG0353 RecR Recombinational D 27.9 34 0.00073 28.0 1.3 25 5-32 52-76 (198)
148 smart00450 RHOD Rhodanese Homo 27.8 1.1E+02 0.0024 20.2 4.0 30 117-149 53-82 (100)
149 cd01720 Sm_D2 The eukaryotic S 27.6 82 0.0018 22.2 3.1 28 110-137 4-31 (87)
150 PF08353 DUF1727: Domain of un 27.3 1.3E+02 0.0028 22.2 4.3 73 44-128 34-109 (113)
151 PF13147 Amidohydro_4: Amidohy 27.3 2.5E+02 0.0054 22.6 6.6 53 106-158 222-279 (304)
152 COG3564 Uncharacterized protei 27.1 88 0.0019 22.7 3.2 27 106-132 10-36 (116)
153 PF10096 DUF2334: Uncharacteri 26.8 2E+02 0.0043 24.0 5.9 56 68-130 23-78 (243)
154 PRK13844 recombination protein 26.8 37 0.00081 27.9 1.4 26 5-33 55-80 (200)
155 PRK08762 molybdopterin biosynt 26.6 1.5E+02 0.0033 26.4 5.4 28 118-148 55-82 (376)
156 COG1228 HutI Imidazolonepropio 26.5 2.1E+02 0.0047 26.0 6.4 47 111-158 297-346 (406)
157 PRK10310 PTS system galactitol 26.2 61 0.0013 22.9 2.3 16 121-136 3-18 (94)
158 PRK10499 PTS system N,N'-diace 26.2 1.5E+02 0.0032 21.5 4.4 61 121-181 4-71 (106)
159 cd01449 TST_Repeat_2 Thiosulfa 26.0 1E+02 0.0022 22.0 3.5 28 118-148 76-103 (118)
160 PRK08334 translation initiatio 25.7 1.2E+02 0.0025 27.3 4.5 12 119-131 160-171 (356)
161 PRK06179 short chain dehydroge 25.2 2.1E+02 0.0045 23.4 5.8 62 68-130 22-83 (270)
162 PF03102 NeuB: NeuB family; I 25.2 1.2E+02 0.0025 25.7 4.1 28 103-131 125-152 (241)
163 PF08271 TF_Zn_Ribbon: TFIIB z 25.0 41 0.0009 20.0 1.1 25 9-33 2-30 (43)
164 cd01527 RHOD_YgaP Member of th 24.9 1.2E+02 0.0026 20.9 3.7 18 117-135 51-68 (99)
165 PRK02947 hypothetical protein; 24.7 1.3E+02 0.0028 25.2 4.4 33 103-138 23-55 (246)
166 cd05565 PTS_IIB_lactose PTS_II 24.6 59 0.0013 23.5 2.0 60 122-184 2-71 (99)
167 PLN00206 DEAD-box ATP-dependen 24.6 1.1E+02 0.0024 28.6 4.3 61 119-182 157-220 (518)
168 KOG0870 DNA polymerase epsilon 24.5 1.5E+02 0.0033 23.5 4.4 77 109-187 16-104 (172)
169 cd01535 4RHOD_Repeat_4 Member 24.5 2E+02 0.0044 21.8 5.1 31 111-144 41-71 (145)
170 PRK04136 rpl40e 50S ribosomal 24.4 39 0.00085 21.1 0.9 14 2-15 23-36 (48)
171 COG0084 TatD Mg-dependent DNas 24.3 1E+02 0.0023 26.2 3.8 55 105-159 110-170 (256)
172 TIGR01502 B_methylAsp_ase meth 24.0 4.3E+02 0.0094 24.1 7.9 61 98-158 326-395 (408)
173 PRK13936 phosphoheptose isomer 23.9 2.2E+02 0.0048 22.8 5.5 33 104-139 27-59 (197)
174 TIGR03573 WbuX N-acetyl sugar 23.7 1.5E+02 0.0033 26.2 4.8 32 127-159 283-314 (343)
175 PF09855 DUF2082: Nucleic-acid 23.5 38 0.00083 22.5 0.8 16 9-25 2-17 (64)
176 PF01904 DUF72: Protein of unk 23.3 4.2E+02 0.0092 21.8 8.4 64 66-129 134-213 (230)
177 TIGR01550 DOC_P1 death-on-curi 23.3 2.6E+02 0.0057 20.6 5.4 52 104-161 49-105 (121)
178 PF00641 zf-RanBP: Zn-finger i 23.0 46 0.00099 18.1 0.9 25 8-33 5-29 (30)
179 PRK13130 H/ACA RNA-protein com 22.9 62 0.0013 20.9 1.6 27 5-34 3-29 (56)
180 COG2089 SpsE Sialic acid synth 22.6 3.4E+02 0.0074 24.2 6.6 28 105-132 158-187 (347)
181 cd00308 enolase_like Enolase-s 22.5 3.7E+02 0.0079 21.8 6.7 30 103-132 179-208 (229)
182 PF03853 YjeF_N: YjeF-related 22.4 1.8E+02 0.0039 22.7 4.6 68 108-180 11-80 (169)
183 cd05564 PTS_IIB_chitobiose_lic 21.8 74 0.0016 22.5 2.1 57 122-181 1-67 (96)
184 PRK05569 flavodoxin; Provision 21.8 1.4E+02 0.0031 22.1 3.8 70 106-181 69-139 (141)
185 PF12643 MazG-like: MazG-like 21.6 3.2E+02 0.0069 19.7 5.9 51 133-183 41-96 (98)
186 PF05763 DUF835: Protein of un 21.5 2.3E+02 0.0051 21.5 4.9 41 107-162 65-105 (136)
187 PRK06371 translation initiatio 21.3 99 0.0022 27.4 3.1 21 111-131 128-148 (329)
188 TIGR01391 dnaG DNA primase, ca 21.3 96 0.0021 28.2 3.1 36 124-161 55-90 (415)
189 PRK11493 sseA 3-mercaptopyruva 21.2 73 0.0016 27.1 2.2 35 112-149 223-257 (281)
190 TIGR02094 more_P_ylases alpha- 21.1 95 0.0021 29.8 3.2 36 121-159 161-199 (601)
191 PF02571 CbiJ: Precorrin-6x re 21.0 1.6E+02 0.0034 24.9 4.2 29 55-83 46-75 (249)
192 COG4738 Predicted transcriptio 20.9 67 0.0015 24.0 1.6 32 129-161 23-54 (124)
193 cd04765 HTH_MlrA-like_sg2 Heli 20.7 3.2E+02 0.0069 19.4 5.5 40 142-181 53-92 (99)
194 PRK15043 transcriptional regul 20.6 1.9E+02 0.0041 24.5 4.5 63 119-181 161-235 (243)
195 cd01906 proteasome_protease_Hs 20.4 1.4E+02 0.003 23.1 3.6 35 126-160 128-162 (182)
196 cd07212 Pat_PNPLA9 Patatin-lik 20.2 1.5E+02 0.0032 25.8 4.0 39 120-161 26-66 (312)
197 smart00547 ZnF_RBZ Zinc finger 20.2 62 0.0013 16.8 1.0 22 9-31 4-25 (26)
198 PF14698 ASL_C2: Argininosucci 20.2 2E+02 0.0043 19.1 3.8 25 135-160 4-28 (70)
No 1
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=100.00 E-value=6e-33 Score=215.85 Aligned_cols=146 Identities=29% Similarity=0.403 Sum_probs=136.6
Q ss_pred cCCCCceEeCCcEEEcChhhcCCHHHHHhCCCcEEEecCCCCccccCCCcEEEeccCCCc------ccHHHHHHHHHHHH
Q 027835 44 VSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCLEDDKI------LQFDDAIQFLEQCE 117 (218)
Q Consensus 44 ~~~~p~~I~~~~lylG~~~~~~~~~~l~~~gI~~IInl~~~~~~~~~~~~~~~~ip~~~~------~~~~~~~~fI~~~~ 117 (218)
+....++|.+ .||+++-..+.+..++++.+|++|||.+.+.++..-.++.|..++..|. ++|+.+.+.|+...
T Consensus 13 ~~~~~SqIt~-sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~ 91 (198)
T KOG1718|consen 13 SIGGMSQITP-SLFLSNGVAANDKLLLKKRKITCIINATTEVPNTSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVI 91 (198)
T ss_pred CccchhhcCc-ceeEeccccccCHHHHHhcCceEEEEcccCCCCccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHH
Confidence 4557799999 9999988889999999999999999999999998888999999988764 57999999999999
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCC
Q 027835 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGSVDGSNP 190 (218)
Q Consensus 118 ~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~~l~~~~~~~~~ 190 (218)
..||++||||.+|+|||+++++||||++.+|++.||+.++|++||.+.||.+|++||..||++|+++.+|..-
T Consensus 92 ~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~sV~MV 164 (198)
T KOG1718|consen 92 MRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNASVRMV 164 (198)
T ss_pred hcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCCeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987543
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=100.00 E-value=2.8e-32 Score=210.43 Aligned_cols=131 Identities=44% Similarity=0.674 Sum_probs=121.5
Q ss_pred CceEeCCcEEEcChhhcCCHHHHHhCCCcEEEecCCCCccccCCCcEEEeccCCCc------ccHHHHHHHHHHHHhcCC
Q 027835 48 PSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCLEDDKI------LQFDDAIQFLEQCERDKA 121 (218)
Q Consensus 48 p~~I~~~~lylG~~~~~~~~~~l~~~gI~~IInl~~~~~~~~~~~~~~~~ip~~~~------~~~~~~~~fI~~~~~~~~ 121 (218)
|++|.| +||+|+.+++.+.+.|++.||++|||++.+.......++.|+++|..|. ..++.+++||+..+.+++
T Consensus 1 ~~~I~~-~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (138)
T smart00195 1 PSEILP-HLYLGSYSSALNLALLKKLGITHVINVTNEVPNLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGG 79 (138)
T ss_pred CcEEeC-CeEECChhHcCCHHHHHHcCCCEEEEccCCCCCCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCC
Confidence 689999 9999999999999999999999999998876655567889999886652 467899999999999999
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHH
Q 027835 122 CVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQ 179 (218)
Q Consensus 122 ~VLVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~ 179 (218)
+|||||.+|+|||+++++||||+..+|++++|+++|+++||.+.||++|++||+.||+
T Consensus 80 ~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~ 137 (138)
T smart00195 80 KVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYER 137 (138)
T ss_pred eEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999986
No 3
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=3.1e-31 Score=219.58 Aligned_cols=140 Identities=31% Similarity=0.543 Sum_probs=131.9
Q ss_pred cCCCCceEeCCcEEEcChhhcCCHHHHHhCCCcEEEecCCCCccccCC--CcEEEeccCCCc------ccHHHHHHHHHH
Q 027835 44 VSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKN--SFTYHCLEDDKI------LQFDDAIQFLEQ 115 (218)
Q Consensus 44 ~~~~p~~I~~~~lylG~~~~~~~~~~l~~~gI~~IInl~~~~~~~~~~--~~~~~~ip~~~~------~~~~~~~~fI~~ 115 (218)
...||.+|+| +||+|+..++.+.+.|+++||++|||+++..++.++. .+.|..||+.|. ..|++|+.||++
T Consensus 168 ra~FPV~ilp-~LYLg~a~ds~NldvLkk~gI~yviNVTpnlpn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIde 246 (343)
T KOG1717|consen 168 RASFPVEILP-NLYLGCAKDSTNLDVLKKYGIKYVINVTPNLPNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDE 246 (343)
T ss_pred ccCcchhhcc-chhcccccccccHHHHHhcCceEEEecCCCCcchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHH
Confidence 6789999999 9999999999999999999999999999999887765 589999998863 579999999999
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhCC
Q 027835 116 CERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGS 184 (218)
Q Consensus 116 ~~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~~l~~~ 184 (218)
++.++..|||||-+|++||+|+++||||++..+++++|+++|+.++..|.||-+|+-||..||+.|...
T Consensus 247 Arsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl~ 315 (343)
T KOG1717|consen 247 ARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGLE 315 (343)
T ss_pred hhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999998544
No 4
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.97 E-value=2.9e-30 Score=197.70 Aligned_cols=124 Identities=40% Similarity=0.650 Sum_probs=114.8
Q ss_pred EEEcChhhcCCHHHHHhCCCcEEEecCCCCcc---ccCCCcEEEeccCCC------cccHHHHHHHHHHHHhcCCeEEEE
Q 027835 56 LYLGSYDNASRSGLLKTQGISRVLNTVPSCQN---LYKNSFTYHCLEDDK------ILQFDDAIQFLEQCERDKACVLVH 126 (218)
Q Consensus 56 lylG~~~~~~~~~~l~~~gI~~IInl~~~~~~---~~~~~~~~~~ip~~~------~~~~~~~~~fI~~~~~~~~~VLVH 126 (218)
||+|+.+.+. ...++++||++|||+..+.+. ....++.|+.+|..| ...++.+++||+++..++++||||
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVH 79 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVH 79 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEE
Confidence 7999999999 999999999999999987765 455678888887654 367999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHH
Q 027835 127 CMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQK 180 (218)
Q Consensus 127 C~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~~ 180 (218)
|.+|+|||+++++||||...+|++++|+++|+++||.+.||++|+++|.+||++
T Consensus 80 C~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 80 CKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp ESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred eCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999974
No 5
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=3.6e-29 Score=215.49 Aligned_cols=182 Identities=34% Similarity=0.501 Sum_probs=146.9
Q ss_pred ccCCCccccCccccc--cCccccccC--C-CCCCCccc-c--cccccCCCCceEeCCcEEEcChhhcCCHHHHHhCCCcE
Q 027835 6 RENPCSVCGHYHKYE--EGEVCGICG--H-RSASSAEK-T--TTLQVSAFPSEILPDFLYLGSYDNASRSGLLKTQGISR 77 (218)
Q Consensus 6 ~~~~~~~~~~~~~~~--~~~~~~~~~--~-~~~~~~~~-~--~~~~~~~~p~~I~~~~lylG~~~~~~~~~~l~~~gI~~ 77 (218)
..+++..+|.++.+. ....|...+ . ..+..... . .+.....-+++|.| +||+|+..++.+.+.+++.||++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p-~l~lg~~~~~~~~~~l~~~~it~ 103 (285)
T KOG1716|consen 25 LRSPAALKGGSESFSSEYPSLCEKSGSFGGLLPMSASQRCLPSPSETGNPIVEILP-NLYLGSQGVASDPDLLKKLGITH 103 (285)
T ss_pred CCcccccCCccccccCCCCcccccccccccccCcccccccccccccccCCceeecC-CceecCcccccchhhHHHcCCCE
Confidence 556777788888877 333343333 1 01111111 1 01122346788888 99999999999999999999999
Q ss_pred EEecCCCCccc--cCC-CcEEEeccCCCc------ccHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 78 VLNTVPSCQNL--YKN-SFTYHCLEDDKI------LQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 78 IInl~~~~~~~--~~~-~~~~~~ip~~~~------~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
|+|+....+.. ... .++|+.++..|. .+|+++++||+.++.++++|||||.+|+|||+++++||||++.+|
T Consensus 104 vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~ 183 (285)
T KOG1716|consen 104 VLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYEGL 183 (285)
T ss_pred EEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHcCC
Confidence 99999887763 333 789999986653 579999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCC
Q 027835 149 RLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGSVDGS 188 (218)
Q Consensus 149 sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~~l~~~~~~~ 188 (218)
++++|+++|+.+||.+.||.+|+.||++||+.+.......
T Consensus 184 ~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~~~ 223 (285)
T KOG1716|consen 184 SLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSPSQ 223 (285)
T ss_pred CHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCccc
Confidence 9999999999999999999999999999999998876554
No 6
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.96 E-value=5.1e-29 Score=191.72 Aligned_cols=130 Identities=43% Similarity=0.677 Sum_probs=117.5
Q ss_pred CceEeCCcEEEcChhhcCCHHHHHhCCCcEEEecCCCCcc--ccCCCcEEEeccCCCc------ccHHHHHHHHHHHHhc
Q 027835 48 PSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQN--LYKNSFTYHCLEDDKI------LQFDDAIQFLEQCERD 119 (218)
Q Consensus 48 p~~I~~~~lylG~~~~~~~~~~l~~~gI~~IInl~~~~~~--~~~~~~~~~~ip~~~~------~~~~~~~~fI~~~~~~ 119 (218)
+++|.+ +||+|+.+++.+.+.|++.||++|||++.+.+. ....++.|.++|..|. ..++.+++||+....+
T Consensus 2 ~~~i~~-~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~ 80 (139)
T cd00127 2 LSEITP-GLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREK 80 (139)
T ss_pred cCEEcC-CeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhc
Confidence 578999 999999999999999999999999999887653 4456788888875542 3577889999999999
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHH
Q 027835 120 KACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYE 178 (218)
Q Consensus 120 ~~~VLVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e 178 (218)
+++|||||.+|+|||++++++|||...+|++++|+++||++||.+.||++|++||.+||
T Consensus 81 ~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 81 GGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999996
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.93 E-value=1.9e-25 Score=207.83 Aligned_cols=152 Identities=21% Similarity=0.253 Sum_probs=127.6
Q ss_pred CCceEeCCcEEEcChhhcCCHHHHHhCCCcEEEecCCCCcc----ccCCCcEEEeccCCCc-----ccHHHHHHHHHHHH
Q 027835 47 FPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQN----LYKNSFTYHCLEDDKI-----LQFDDAIQFLEQCE 117 (218)
Q Consensus 47 ~p~~I~~~~lylG~~~~~~~~~~l~~~gI~~IInl~~~~~~----~~~~~~~~~~ip~~~~-----~~~~~~~~fI~~~~ 117 (218)
-+++|.| +||+|+.+.+.+.+.|++.||++|||++.+.+. ....++.|+++|..|. .+++++++||++.+
T Consensus 94 ~~~~I~~-~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~ 172 (547)
T PRK12361 94 AIQKIDE-NLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTLAQLNQAINWIHRQV 172 (547)
T ss_pred cceEEcC-cEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcHHHHHHHHHHHHHHH
Confidence 4588999 999999999999999999999999999876542 3345689999887653 57899999999999
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHh-cCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 027835 118 RDKACVLVHCMFGKNRSAAIVIAYLMKC-KGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGSVDGSNPTPLPAL 196 (218)
Q Consensus 118 ~~~~~VLVHC~~G~sRS~~vv~ayLm~~-~~~sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~~l~~~~~~~~~~~~~~~ 196 (218)
+++++|||||.+|+|||+++++||||.+ .++++++|+++||++||.+.||++|+++|++|++...-.. ........|
T Consensus 173 ~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~~~~~--~~~~~iI~N 250 (547)
T PRK12361 173 RANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQGKLNI--HKRAWLIAN 250 (547)
T ss_pred HCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCccc--CCceEEEEC
Confidence 9999999999999999999999999976 5899999999999999999999999999999987743322 233333456
Q ss_pred CCCCC
Q 027835 197 SAGMP 201 (218)
Q Consensus 197 ~~~~~ 201 (218)
|.+..
T Consensus 251 P~SG~ 255 (547)
T PRK12361 251 PVSGG 255 (547)
T ss_pred CCCCC
Confidence 65543
No 8
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.88 E-value=8.7e-22 Score=156.99 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=107.5
Q ss_pred ceEeCCcEEEcChhhcC----CHHHHHhCCCcEEEecCCCCc---cccCCCcEEEeccCCC--cc---cHHHHHHHHHHH
Q 027835 49 SEILPDFLYLGSYDNAS----RSGLLKTQGISRVLNTVPSCQ---NLYKNSFTYHCLEDDK--IL---QFDDAIQFLEQC 116 (218)
Q Consensus 49 ~~I~~~~lylG~~~~~~----~~~~l~~~gI~~IInl~~~~~---~~~~~~~~~~~ip~~~--~~---~~~~~~~fI~~~ 116 (218)
+.+.. ++..-..|... ....|++.||++||+++.... .....++.|+++|..| .+ .++.+++++++.
T Consensus 12 ~~~~~-r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i~~~ 90 (166)
T PTZ00242 12 EYVLF-KFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLLDQE 90 (166)
T ss_pred eeece-EEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHHHHHH
Confidence 45555 66665555443 347889999999999976432 2333578999988654 23 356778888887
Q ss_pred Hhc----CCeEEEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Q 027835 117 ERD----KACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGSV 185 (218)
Q Consensus 117 ~~~----~~~VLVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~~l~~~~ 185 (218)
+.. |++|+|||.+|+||||+++++|||..+++++++|+++|+.+||.+ +++.|+.+|..|++.++...
T Consensus 91 ~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~-i~~~Q~~~l~~~~~~~~~~~ 162 (166)
T PTZ00242 91 FAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGA-INQTQLQFLKKYKPRKKAAG 162 (166)
T ss_pred HHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHhccCC
Confidence 754 999999999999999999999999999999999999999999976 48999999999999876654
No 9
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.87 E-value=7.5e-22 Score=151.93 Aligned_cols=137 Identities=23% Similarity=0.393 Sum_probs=114.2
Q ss_pred eEeCCcEEEcChhhc-CCHHHHHhCCCcEEEecCCCCccc------cCCCcEEEeccCCCc------ccHHHHHHHHHHH
Q 027835 50 EILPDFLYLGSYDNA-SRSGLLKTQGISRVLNTVPSCQNL------YKNSFTYHCLEDDKI------LQFDDAIQFLEQC 116 (218)
Q Consensus 50 ~I~~~~lylG~~~~~-~~~~~l~~~gI~~IInl~~~~~~~------~~~~~~~~~ip~~~~------~~~~~~~~fI~~~ 116 (218)
+|.. .+.+|-.+-. .+.+.++++|+..|+.+.++.+-. -..+++++.+|..|. ..+.++++||.+.
T Consensus 27 ~~~~-~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~ 105 (183)
T KOG1719|consen 27 RIDE-FVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKN 105 (183)
T ss_pred eecc-eEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhc
Confidence 3444 6666655433 466889999999999988765432 224678888887653 4577889999999
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Q 027835 117 ERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGSVDG 187 (218)
Q Consensus 117 ~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~~l~~~~~~ 187 (218)
...|+.|||||++|.+||+|++++|||+..+|++++|+++|+.+||.+.+.+++++.|.+|...+..+.+.
T Consensus 106 asLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~~~~ss 176 (183)
T KOG1719|consen 106 ASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIVANASS 176 (183)
T ss_pred cccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988766643
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.86 E-value=3.2e-21 Score=159.85 Aligned_cols=120 Identities=15% Similarity=0.209 Sum_probs=99.7
Q ss_pred CHHHHHhCCCcEEEecCCCCc---cccCCCcEEEeccCCC--cc---cHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHH
Q 027835 66 RSGLLKTQGISRVLNTVPSCQ---NLYKNSFTYHCLEDDK--IL---QFDDAIQFLEQCERDKACVLVHCMFGKNRSAAI 137 (218)
Q Consensus 66 ~~~~l~~~gI~~IInl~~~~~---~~~~~~~~~~~ip~~~--~~---~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~v 137 (218)
.++.|++.||++||+++.... .+...++.++++|..| .| .++++++++++.+..|++|+|||.+|+|||+++
T Consensus 108 yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl 187 (241)
T PTZ00393 108 YIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVL 187 (241)
T ss_pred HHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 347889999999999876432 2345578777776544 33 456788888888889999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Q 027835 138 VIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGSVDG 187 (218)
Q Consensus 138 v~ayLm~~~~~sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~~l~~~~~~ 187 (218)
+++|||. .||++++|+++||++||.+ ++..|+.+|++|+++..++..+
T Consensus 188 ~AayLI~-~GmspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~k~~~~ 235 (241)
T PTZ00393 188 ASIVLIE-FGMDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKKKKKNCL 235 (241)
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhccccchh
Confidence 9999998 7999999999999999977 5899999999999998665543
No 11
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.80 E-value=1.3e-18 Score=140.38 Aligned_cols=111 Identities=17% Similarity=0.316 Sum_probs=92.1
Q ss_pred HHHHhCCCcEEEecCCCC---ccccCCCcEEEeccCC--CcccHH---HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHH
Q 027835 68 GLLKTQGISRVLNTVPSC---QNLYKNSFTYHCLEDD--KILQFD---DAIQFLEQCERDKACVLVHCMFGKNRSAAIVI 139 (218)
Q Consensus 68 ~~l~~~gI~~IInl~~~~---~~~~~~~~~~~~ip~~--~~~~~~---~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ 139 (218)
..+++.+++.++.+.... ..+...++.+++++.. ..+... ++++.++.+.+ +++|.|||++|+|||++|++
T Consensus 88 ~~~~~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~liA 166 (225)
T KOG1720|consen 88 QYFKNNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPTDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLIA 166 (225)
T ss_pred HHhhhcccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCCHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHHH
Confidence 566789999999886644 4566677888776644 355544 44555556666 89999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHH
Q 027835 140 AYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQ 179 (218)
Q Consensus 140 ayLm~~~~~sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~ 179 (218)
||||+.++|++.||++.||..||.+...++|...|.++..
T Consensus 167 c~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 167 CYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988877
No 12
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.63 E-value=3.8e-15 Score=120.26 Aligned_cols=90 Identities=26% Similarity=0.281 Sum_probs=68.0
Q ss_pred cCCCcEEEeccCCC-----cccHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHhc-CCCHHHHHHHHHHhCC
Q 027835 89 YKNSFTYHCLEDDK-----ILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCK-GWRLAQSHQWVKERRP 162 (218)
Q Consensus 89 ~~~~~~~~~ip~~~-----~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~-~~sl~~A~~~vr~~RP 162 (218)
...+..+..+|..| ...++++++||+.+..+|++|+|||.+|+||||++++||||.++ .+..++|+.+++.+||
T Consensus 69 ~~~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~ 148 (180)
T COG2453 69 ENDGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRP 148 (180)
T ss_pred ccCCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 34456666665443 35789999999999999999999999999999999999999995 5577888888888887
Q ss_pred CccCCHHHHHHHHHHH
Q 027835 163 SVNLTEDVHQQLQEYE 178 (218)
Q Consensus 163 ~i~pn~~f~~~L~~~e 178 (218)
.......|...+.+.+
T Consensus 149 ~~v~~~~q~~~~~e~~ 164 (180)
T COG2453 149 GAVVTEIQHLFELEQE 164 (180)
T ss_pred cccccHHHHHHHHHHH
Confidence 5444444444433333
No 13
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.54 E-value=4.3e-14 Score=112.47 Aligned_cols=135 Identities=16% Similarity=0.226 Sum_probs=81.4
Q ss_pred CCCceEeCCcEEEcChhhcCCHHHHHhCCCcEEEecCCCCcc------ccCCCcEEEeccCCCcc---------cHHHHH
Q 027835 46 AFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQN------LYKNSFTYHCLEDDKIL---------QFDDAI 110 (218)
Q Consensus 46 ~~p~~I~~~~lylG~~~~~~~~~~l~~~gI~~IInl~~~~~~------~~~~~~~~~~ip~~~~~---------~~~~~~ 110 (218)
..-..|.+ +||.|+++...+..+|+++|+++||++..+... ....++.+++++..... .+.+++
T Consensus 5 ~nF~~V~~-~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL 83 (164)
T PF03162_consen 5 LNFGMVEP-GVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEAL 83 (164)
T ss_dssp TT-EEEET-TEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHH
T ss_pred ccccCCCC-CccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHH
Confidence 34577888 999999999999999999999999999886432 23467888888765321 233444
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Q 027835 111 QFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGSV 185 (218)
Q Consensus 111 ~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~~l~~~~ 185 (218)
++|.+ ..+.+|||||..|..|||+|+++|= +.+||++..|++..+.--. ...+..-...++.|+..+....
T Consensus 84 ~~ild--~~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~-~~~~~~~~~fIe~f~~~~~~~~ 154 (164)
T PF03162_consen 84 EIILD--PRNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFAG-PKIRYLDEQFIELFDVELVVPP 154 (164)
T ss_dssp HHHH---GGG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHHG-GG--HHHHHHHHT---------
T ss_pred HHHhC--CCCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhcC-CCCcHHHHHHHHhcCcceeccc
Confidence 44322 2457999999999999999999998 7799999999998887542 2445556677777776664433
No 14
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.45 E-value=1.8e-12 Score=99.97 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=85.4
Q ss_pred ceEeCCcEEEcChhhcCCHHHHHhCCCcEEEecCCCCcc-----c-------cCCCcEEEeccCCCc-ccHHHHHHHHHH
Q 027835 49 SEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQN-----L-------YKNSFTYHCLEDDKI-LQFDDAIQFLEQ 115 (218)
Q Consensus 49 ~~I~~~~lylG~~~~~~~~~~l~~~gI~~IInl~~~~~~-----~-------~~~~~~~~~ip~~~~-~~~~~~~~fI~~ 115 (218)
.+|.+ .+|+++.....+.+.|+++||++|||+....+. . ...++.|+++|.... ..-+.+..|.+-
T Consensus 3 ~~i~~-~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~~~~v~~f~~~ 81 (135)
T TIGR01244 3 RKLTE-HLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDITPDDVETFRAA 81 (135)
T ss_pred eEcCC-CeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCCCHHHHHHHHHH
Confidence 46777 999999999999999999999999999764321 1 125889999986532 222333333333
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCcc
Q 027835 116 CERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVN 165 (218)
Q Consensus 116 ~~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~RP~i~ 165 (218)
.....++||+||++|. ||+++.+.++.. .|++.+++++..+.....+.
T Consensus 82 ~~~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 82 IGAAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDLS 129 (135)
T ss_pred HHhCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCcc
Confidence 3345689999999999 998888777666 78999999999988765443
No 15
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.41 E-value=4.2e-12 Score=96.08 Aligned_cols=113 Identities=22% Similarity=0.359 Sum_probs=87.1
Q ss_pred HHHHHhCCCcEEEecCC---CCccccCCCcEEEeccCCC-ccc----HHHHHHHHHH--HHhcCCeEEEEcCCCCcHHHH
Q 027835 67 SGLLKTQGISRVLNTVP---SCQNLYKNSFTYHCLEDDK-ILQ----FDDAIQFLEQ--CERDKACVLVHCMFGKNRSAA 136 (218)
Q Consensus 67 ~~~l~~~gI~~IInl~~---~~~~~~~~~~~~~~ip~~~-~~~----~~~~~~fI~~--~~~~~~~VLVHC~~G~sRS~~ 136 (218)
.+.|+++|+++|+.+++ +.......++..++++-+| .+. .++-...+.. ....+..|.|||.+|+||++.
T Consensus 34 ieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapv 113 (173)
T KOG2836|consen 34 IEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPV 113 (173)
T ss_pred HHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchH
Confidence 47899999999998865 3345667889999988654 332 2222332222 223477899999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHH
Q 027835 137 IVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKI 181 (218)
Q Consensus 137 vv~ayLm~~~~~sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~~l 181 (218)
+++.-|+. .||..++|+++||.+| ...+|..++..|++|..+.
T Consensus 114 lvalalie-~gmkyedave~ir~kr-rga~n~kql~~lekyrpk~ 156 (173)
T KOG2836|consen 114 LVALALIE-AGMKYEDAVEMIRQKR-RGAINSKQLLYLEKYRPKM 156 (173)
T ss_pred HHHHHHHH-ccccHHHHHHHHHHHh-hccccHHHHHHHHHhCccc
Confidence 99888887 6999999999999999 5778999999999996543
No 16
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.35 E-value=2.4e-12 Score=101.45 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=55.7
Q ss_pred CCHHHHHhCCCcEEEecCCCCc-----------cccCCCcEEEeccCCC--cccHH---HHHHHHHHHHhcCCeEEEEcC
Q 027835 65 SRSGLLKTQGISRVLNTVPSCQ-----------NLYKNSFTYHCLEDDK--ILQFD---DAIQFLEQCERDKACVLVHCM 128 (218)
Q Consensus 65 ~~~~~l~~~gI~~IInl~~~~~-----------~~~~~~~~~~~ip~~~--~~~~~---~~~~fI~~~~~~~~~VLVHC~ 128 (218)
.+++.|+..|++.|+.++...+ .....++.++++|+.| .+.++ ++++-|...+++|++|+|||+
T Consensus 62 ~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~ 141 (168)
T PF05706_consen 62 ADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCR 141 (168)
T ss_dssp HHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-S
T ss_pred HHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 4557899999999998765321 1233568888877654 45544 445556677789999999999
Q ss_pred CCCcHHHHHHHHHHHHhc-CCCHHHHH
Q 027835 129 FGKNRSAAIVIAYLMKCK-GWRLAQSH 154 (218)
Q Consensus 129 ~G~sRS~~vv~ayLm~~~-~~sl~~A~ 154 (218)
+|+|||+++++++|+... .+++++|+
T Consensus 142 GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 142 GGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp SSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 999999999999998865 57999986
No 17
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.33 E-value=1.2e-11 Score=89.55 Aligned_cols=85 Identities=20% Similarity=0.322 Sum_probs=65.2
Q ss_pred CcEEEeccCCCcccH-HHHHHHHHHHHh------cCCeEEEEcCCCCcHHHHHHHHHHHHhc------CCCHHHHHHHHH
Q 027835 92 SFTYHCLEDDKILQF-DDAIQFLEQCER------DKACVLVHCMFGKNRSAAIVIAYLMKCK------GWRLAQSHQWVK 158 (218)
Q Consensus 92 ~~~~~~ip~~~~~~~-~~~~~fI~~~~~------~~~~VLVHC~~G~sRS~~vv~ayLm~~~------~~sl~~A~~~vr 158 (218)
.+.|..+|+...+.- +..++|++...+ .+++|+|||.+|.|||++++++|++... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 355667777665432 555555554433 2689999999999999999999999764 368999999999
Q ss_pred HhCCCccCCHHHHHHHHH
Q 027835 159 ERRPSVNLTEDVHQQLQE 176 (218)
Q Consensus 159 ~~RP~i~pn~~f~~~L~~ 176 (218)
..||....+..++..+..
T Consensus 84 ~~r~~~~~~~~q~~~~~~ 101 (105)
T smart00012 84 KQRPGMVQTFEQYLFLYR 101 (105)
T ss_pred hhhhhhCCcHHHHHHHHH
Confidence 999999998888777654
No 18
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.33 E-value=1.2e-11 Score=89.55 Aligned_cols=85 Identities=20% Similarity=0.322 Sum_probs=65.2
Q ss_pred CcEEEeccCCCcccH-HHHHHHHHHHHh------cCCeEEEEcCCCCcHHHHHHHHHHHHhc------CCCHHHHHHHHH
Q 027835 92 SFTYHCLEDDKILQF-DDAIQFLEQCER------DKACVLVHCMFGKNRSAAIVIAYLMKCK------GWRLAQSHQWVK 158 (218)
Q Consensus 92 ~~~~~~ip~~~~~~~-~~~~~fI~~~~~------~~~~VLVHC~~G~sRS~~vv~ayLm~~~------~~sl~~A~~~vr 158 (218)
.+.|..+|+...+.- +..++|++...+ .+++|+|||.+|.|||++++++|++... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 355667777665432 555555554433 2689999999999999999999999764 368999999999
Q ss_pred HhCCCccCCHHHHHHHHH
Q 027835 159 ERRPSVNLTEDVHQQLQE 176 (218)
Q Consensus 159 ~~RP~i~pn~~f~~~L~~ 176 (218)
..||....+..++..+..
T Consensus 84 ~~r~~~~~~~~q~~~~~~ 101 (105)
T smart00404 84 KQRPGMVQTFEQYLFLYR 101 (105)
T ss_pred hhhhhhCCcHHHHHHHHH
Confidence 999999998888777654
No 19
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.16 E-value=1.2e-10 Score=96.93 Aligned_cols=86 Identities=19% Similarity=0.323 Sum_probs=67.1
Q ss_pred CCcEEEeccCCCccc-HHHHHHHHHHHHhc-----CCeEEEEcCCCCcHHHHHHHHHHHHhc-----CCCHHHHHHHHHH
Q 027835 91 NSFTYHCLEDDKILQ-FDDAIQFLEQCERD-----KACVLVHCMFGKNRSAAIVIAYLMKCK-----GWRLAQSHQWVKE 159 (218)
Q Consensus 91 ~~~~~~~ip~~~~~~-~~~~~~fI~~~~~~-----~~~VLVHC~~G~sRS~~vv~ayLm~~~-----~~sl~~A~~~vr~ 159 (218)
..+.|..+++...+. .+++++|+...... +++|+|||.+|+||||++++++++... .+++.+++..+|+
T Consensus 131 ~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~ 210 (231)
T cd00047 131 THFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRS 210 (231)
T ss_pred EEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHh
Confidence 345566667766543 35666666655433 689999999999999999999876543 6899999999999
Q ss_pred hCCCccCCHHHHHHHHH
Q 027835 160 RRPSVNLTEDVHQQLQE 176 (218)
Q Consensus 160 ~RP~i~pn~~f~~~L~~ 176 (218)
.||.+..+..++..+..
T Consensus 211 ~R~~~v~~~~Qy~f~~~ 227 (231)
T cd00047 211 QRPGMVQTEEQYIFLYR 227 (231)
T ss_pred ccccccCCHHHHHHHHH
Confidence 99999999988887764
No 20
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.15 E-value=1.8e-10 Score=85.66 Aligned_cols=89 Identities=22% Similarity=0.256 Sum_probs=56.6
Q ss_pred ceEeCCcEEEcChhhcCCHHHHHhCCCcEEEecCCCCcc------------ccCCCcEEEeccCCCc-ccHHHHHHHHHH
Q 027835 49 SEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQN------------LYKNSFTYHCLEDDKI-LQFDDAIQFLEQ 115 (218)
Q Consensus 49 ~~I~~~~lylG~~~~~~~~~~l~~~gI~~IInl~~~~~~------------~~~~~~~~~~ip~~~~-~~~~~~~~fI~~ 115 (218)
.+|.+ .+++++++...+...|++.|+++|||+.++.+. ....++.|+++|.... ...+.+..|.+-
T Consensus 3 ~~i~~-~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~ 81 (110)
T PF04273_consen 3 RQISD-DLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADA 81 (110)
T ss_dssp EEEET-TEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHH
T ss_pred EecCC-CeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHH
Confidence 46778 999999999999999999999999999875432 1235799999998743 344555555554
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHH
Q 027835 116 CERDKACVLVHCMFGKNRSAAIVI 139 (218)
Q Consensus 116 ~~~~~~~VLVHC~~G~sRS~~vv~ 139 (218)
.....++||+||+.|. ||+++.+
T Consensus 82 l~~~~~Pvl~hC~sG~-Ra~~l~~ 104 (110)
T PF04273_consen 82 LESLPKPVLAHCRSGT-RASALWA 104 (110)
T ss_dssp HHTTTTSEEEE-SCSH-HHHHHHH
T ss_pred HHhCCCCEEEECCCCh-hHHHHHH
Confidence 4445789999999995 8877654
No 21
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.14 E-value=2.1e-10 Score=97.21 Aligned_cols=87 Identities=15% Similarity=0.265 Sum_probs=69.5
Q ss_pred CCCcEEEeccCCCcc-cHHHHHHHHHHHHhc----CCeEEEEcCCCCcHHHHHHHHHHHHh-----cCCCHHHHHHHHHH
Q 027835 90 KNSFTYHCLEDDKIL-QFDDAIQFLEQCERD----KACVLVHCMFGKNRSAAIVIAYLMKC-----KGWRLAQSHQWVKE 159 (218)
Q Consensus 90 ~~~~~~~~ip~~~~~-~~~~~~~fI~~~~~~----~~~VLVHC~~G~sRS~~vv~ayLm~~-----~~~sl~~A~~~vr~ 159 (218)
-..+.|..+|+...+ ....+++|+...... +++|+|||.+|+||||++++++++.. ..+++.+++..+|.
T Consensus 158 v~~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~ 237 (258)
T smart00194 158 VTHYHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRS 237 (258)
T ss_pred EEEEeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 345667777877766 456666776665543 68999999999999999999987743 46799999999999
Q ss_pred hCCCccCCHHHHHHHHH
Q 027835 160 RRPSVNLTEDVHQQLQE 176 (218)
Q Consensus 160 ~RP~i~pn~~f~~~L~~ 176 (218)
.||.+..+..|+..+..
T Consensus 238 ~R~~~v~~~~Qy~f~~~ 254 (258)
T smart00194 238 QRPGMVQTEEQYIFLYR 254 (258)
T ss_pred ccccccCCHHHHHHHHH
Confidence 99999999998887754
No 22
>PLN02727 NAD kinase
Probab=99.04 E-value=1e-09 Score=105.51 Aligned_cols=95 Identities=11% Similarity=0.103 Sum_probs=76.5
Q ss_pred cEEEcChhhcCCHHHHHhCCCcEEEecCCCCcc--c---------cCCCcEEEeccCC--CcccHHHHHHHHHHH-HhcC
Q 027835 55 FLYLGSYDNASRSGLLKTQGISRVLNTVPSCQN--L---------YKNSFTYHCLEDD--KILQFDDAIQFLEQC-ERDK 120 (218)
Q Consensus 55 ~lylG~~~~~~~~~~l~~~gI~~IInl~~~~~~--~---------~~~~~~~~~ip~~--~~~~~~~~~~fI~~~-~~~~ 120 (218)
.+|+++++...+.+.+.+.||++|||+.++.+. . ...++.|+++|.. ..+.-+++.+|.+.. ....
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slp 341 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSK 341 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcC
Confidence 689999999999999999999999999775542 1 1247999999874 344556666666655 3457
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 027835 121 ACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (218)
Q Consensus 121 ~~VLVHC~~G~sRS~~vv~ayLm~~~~~s 149 (218)
++||+||++|..|+++|+++|+.+.-+..
T Consensus 342 kPVLvHCKSGarRAGamvA~yl~~~~~~~ 370 (986)
T PLN02727 342 KPIYLHSKEGVWRTSAMVSRWKQYMTRSA 370 (986)
T ss_pred CCEEEECCCCCchHHHHHHHHHHHHcccc
Confidence 89999999999999999999999877654
No 23
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.86 E-value=6.1e-09 Score=94.21 Aligned_cols=140 Identities=16% Similarity=0.217 Sum_probs=107.9
Q ss_pred cccccCCCCceEeCCcEEEcChhhcCCHHHHHhCCCcEEEecCCCCc---cccCCCcEEEeccCCCcccHHHHHHHHH--
Q 027835 40 TTLQVSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQ---NLYKNSFTYHCLEDDKILQFDDAIQFLE-- 114 (218)
Q Consensus 40 ~~~~~~~~p~~I~~~~lylG~~~~~~~~~~l~~~gI~~IInl~~~~~---~~~~~~~~~~~ip~~~~~~~~~~~~fI~-- 114 (218)
.....+++|.+..+ .+|..+..+....-.-+..+--.|.|++.+.. ..+.+.+....+++...+.++.+..|.+
T Consensus 20 ~rIIamsfPa~~~e-s~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f~g~V~~~~~~Dh~~P~L~~l~~~c~~~ 98 (434)
T KOG2283|consen 20 SRIIAMSFPAEGIE-SLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDPSRFHGRVARFGFDDHNPPPLELLCPFCKSM 98 (434)
T ss_pred eeEEEEeCCCCcch-hhhcCCHHHHHHHHhhccCCceEEEecCccccCCccccccceeecCCCCCCCCcHHHHHHHHHCH
Confidence 35677889999999 79999987766555555667778899996321 2333445556778888888887776655
Q ss_pred -HHHh--cCCeEEEEcCCCCcHHHHHHHHHHHHhcCC-CHHHHHHHHHHhC---C--CccCCHHHHHHHHHHHHH
Q 027835 115 -QCER--DKACVLVHCMFGKNRSAAIVIAYLMKCKGW-RLAQSHQWVKERR---P--SVNLTEDVHQQLQEYEQK 180 (218)
Q Consensus 115 -~~~~--~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~-sl~~A~~~vr~~R---P--~i~pn~~f~~~L~~~e~~ 180 (218)
.++. ....|.|||++|.+|||+|++||||+..-. ++++|+++.-.+| . .....|.+++.+.-|+..
T Consensus 99 ~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y~~~~ 173 (434)
T KOG2283|consen 99 DNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYVGYFSRV 173 (434)
T ss_pred HHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHHHHHHHH
Confidence 4443 357899999999999999999999997766 5999999999999 3 345678899999999984
No 24
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.85 E-value=2.2e-08 Score=77.51 Aligned_cols=105 Identities=18% Similarity=0.245 Sum_probs=75.2
Q ss_pred CHHHHHhCCCcEEEecCCCCccccCC-------Cc--EEEec--cCCC-----cccHHHHHHHHHHHHhcCCeEEEEcCC
Q 027835 66 RSGLLKTQGISRVLNTVPSCQNLYKN-------SF--TYHCL--EDDK-----ILQFDDAIQFLEQCERDKACVLVHCMF 129 (218)
Q Consensus 66 ~~~~l~~~gI~~IInl~~~~~~~~~~-------~~--~~~~i--p~~~-----~~~~~~~~~fI~~~~~~~~~VLVHC~~ 129 (218)
..+...+.|-+++|++......+... ++ ...++ +++. ..+++.+++|++++-+. .++||||.+
T Consensus 24 ~ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC~a 102 (172)
T COG5350 24 IAETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHCYA 102 (172)
T ss_pred HHHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceeeeecc
Confidence 34566778899999987643222111 11 11122 2221 24788999999988776 899999999
Q ss_pred CCcHHHHHH-HHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHH
Q 027835 130 GKNRSAAIV-IAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVH 171 (218)
Q Consensus 130 G~sRS~~vv-~ayLm~~~~~sl~~A~~~vr~~RP~i~pn~~f~ 171 (218)
|+|||.+++ ++-|.-...|+..+..+.++..+|.+.||+..+
T Consensus 103 GISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~Rli 145 (172)
T COG5350 103 GISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLI 145 (172)
T ss_pred ccccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHH
Confidence 999997755 344556678999999999999999999999754
No 25
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.80 E-value=3.3e-08 Score=90.07 Aligned_cols=92 Identities=15% Similarity=0.219 Sum_probs=68.1
Q ss_pred CcEEEeccCCCcc-cHHHHHHHHHHHHh---cC---------CeEEEEcCCCCcHHHHHHHHHHHHhcC-CCHHHHHHHH
Q 027835 92 SFTYHCLEDDKIL-QFDDAIQFLEQCER---DK---------ACVLVHCMFGKNRSAAIVIAYLMKCKG-WRLAQSHQWV 157 (218)
Q Consensus 92 ~~~~~~ip~~~~~-~~~~~~~fI~~~~~---~~---------~~VLVHC~~G~sRS~~vv~ayLm~~~~-~sl~~A~~~v 157 (218)
+++|..+||...+ .-+.+.+|++.... .+ ...+|||.+|+||||+++++++|...+ .++++.+..+
T Consensus 425 QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dl 504 (535)
T PRK15375 425 VLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADF 504 (535)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHH
Confidence 4556667776543 22334444433322 11 234799999999999999999998655 4999999999
Q ss_pred HHhCCC-ccCCHHHHHHHHHHHHHHhC
Q 027835 158 KERRPS-VNLTEDVHQQLQEYEQKIFG 183 (218)
Q Consensus 158 r~~RP~-i~pn~~f~~~L~~~e~~l~~ 183 (218)
|..|+. +.-+++|+..|.+...+|.-
T Consensus 505 R~qRng~MVQt~eQy~~l~~~~~~~~~ 531 (535)
T PRK15375 505 RNSRNNRMLEDASQFVQLKAMQAQLLM 531 (535)
T ss_pred HhcCCccccccHHHHHHHHHHHHHHhh
Confidence 999997 88899999999998877753
No 26
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.78 E-value=4.1e-08 Score=77.86 Aligned_cols=105 Identities=17% Similarity=0.162 Sum_probs=55.3
Q ss_pred eEeCCcEEEcChhhcC---CHHHHHhCCCcEEEecCCCCc-----cccCCCcEEEeccCCCcc-----------------
Q 027835 50 EILPDFLYLGSYDNAS---RSGLLKTQGISRVLNTVPSCQ-----NLYKNSFTYHCLEDDKIL----------------- 104 (218)
Q Consensus 50 ~I~~~~lylG~~~~~~---~~~~l~~~gI~~IInl~~~~~-----~~~~~~~~~~~ip~~~~~----------------- 104 (218)
.|-++.||.++..... +...|.++||++|||+....+ .....++.++++|.....
T Consensus 15 ~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 94 (164)
T PF13350_consen 15 RIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADA 94 (164)
T ss_dssp TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHH
T ss_pred eecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccch
Confidence 4666789998765533 456889999999999965332 234457888888753110
Q ss_pred --------------cHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 027835 105 --------------QFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQ 155 (218)
Q Consensus 105 --------------~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~ 155 (218)
.-+..-++++-.....++||+||++|..|||.+++..| ...|++.++.++
T Consensus 95 ~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll-~~lGV~~~~I~~ 158 (164)
T PF13350_consen 95 PRGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLL-SLLGVPDEDIIA 158 (164)
T ss_dssp HHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHH-HHTT--HHHHHH
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHH-HHcCCCHHHHHH
Confidence 01122233333344557999999999999988776655 557998777664
No 27
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.78 E-value=3.4e-08 Score=81.54 Aligned_cols=83 Identities=14% Similarity=0.241 Sum_probs=64.5
Q ss_pred EEeccCCCcc-cHHHHHHHHHHHHhc----CCeEEEEcCCCCcHHHHHHHHHHHHhc-----CCCHHHHHHHHHHhCCCc
Q 027835 95 YHCLEDDKIL-QFDDAIQFLEQCERD----KACVLVHCMFGKNRSAAIVIAYLMKCK-----GWRLAQSHQWVKERRPSV 164 (218)
Q Consensus 95 ~~~ip~~~~~-~~~~~~~fI~~~~~~----~~~VLVHC~~G~sRS~~vv~ayLm~~~-----~~sl~~A~~~vr~~RP~i 164 (218)
|..+++...+ ....+++|++..... .++|+|||.+|.|||++++++.++... ..++.+++..+|..||.+
T Consensus 140 ~~~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~ 219 (235)
T PF00102_consen 140 YTNWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGA 219 (235)
T ss_dssp EESSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTS
T ss_pred eeeccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCc
Confidence 3344544443 467777777766554 489999999999999999988877532 469999999999999999
Q ss_pred cCCHHHHHHHHHH
Q 027835 165 NLTEDVHQQLQEY 177 (218)
Q Consensus 165 ~pn~~f~~~L~~~ 177 (218)
..+..++..+...
T Consensus 220 i~~~~qy~f~~~~ 232 (235)
T PF00102_consen 220 IQSPEQYRFCYMA 232 (235)
T ss_dssp SSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 9999988877643
No 28
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.76 E-value=5.4e-08 Score=84.71 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=60.3
Q ss_pred cEEEeccCCCcc-cHHHHHHHHHHHHh---------------cCCeEEEEcCCCCcHHHHHHHHHHHH-----hcCCCHH
Q 027835 93 FTYHCLEDDKIL-QFDDAIQFLEQCER---------------DKACVLVHCMFGKNRSAAIVIAYLMK-----CKGWRLA 151 (218)
Q Consensus 93 ~~~~~ip~~~~~-~~~~~~~fI~~~~~---------------~~~~VLVHC~~G~sRS~~vv~ayLm~-----~~~~sl~ 151 (218)
+.|..+|+.+.+ ....+++|+..... ..++|+|||.+|+||||++++...+. ....++.
T Consensus 186 ~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~ 265 (303)
T PHA02742 186 FAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLL 265 (303)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHH
Confidence 445556666654 35566666665432 13799999999999999987665554 3355899
Q ss_pred HHHHHHHHhCCCccCCHHHHHHHH
Q 027835 152 QSHQWVKERRPSVNLTEDVHQQLQ 175 (218)
Q Consensus 152 ~A~~~vr~~RP~i~pn~~f~~~L~ 175 (218)
+++..+|..|+....+..++..+.
T Consensus 266 ~~V~~lR~qR~~~Vqt~~QY~F~y 289 (303)
T PHA02742 266 SIVRDLRKQRHNCLSLPQQYIFCY 289 (303)
T ss_pred HHHHHHHhhcccccCCHHHHHHHH
Confidence 999999999999999988665443
No 29
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.76 E-value=6.3e-08 Score=84.10 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=63.2
Q ss_pred CCcEEEeccCCCcc-cHHHHHHHHHHHHh------------cCCeEEEEcCCCCcHHHHHHHHHHHH-----hcCCCHHH
Q 027835 91 NSFTYHCLEDDKIL-QFDDAIQFLEQCER------------DKACVLVHCMFGKNRSAAIVIAYLMK-----CKGWRLAQ 152 (218)
Q Consensus 91 ~~~~~~~ip~~~~~-~~~~~~~fI~~~~~------------~~~~VLVHC~~G~sRS~~vv~ayLm~-----~~~~sl~~ 152 (218)
.++.|..+|+.+.| .....++|+..... ..++|+|||.+|+||||+.++.-.+. ....++.+
T Consensus 179 ~Hfqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~ 258 (298)
T PHA02740 179 SHFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIAN 258 (298)
T ss_pred EEEeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHH
Confidence 35667778888765 45566666643321 24799999999999999987665543 44669999
Q ss_pred HHHHHHHhCCCccCCHHHHHHHH
Q 027835 153 SHQWVKERRPSVNLTEDVHQQLQ 175 (218)
Q Consensus 153 A~~~vr~~RP~i~pn~~f~~~L~ 175 (218)
++..+|..|+....+..++..+.
T Consensus 259 ~V~~lR~qR~~~Vqt~~QY~F~y 281 (298)
T PHA02740 259 ALKKVRQKKYGCMNCLDDYVFCY 281 (298)
T ss_pred HHHHHHhhCccccCCHHHHHHHH
Confidence 99999999999999988665544
No 30
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.75 E-value=1.4e-07 Score=70.18 Aligned_cols=110 Identities=12% Similarity=0.076 Sum_probs=78.5
Q ss_pred ceEeCCcEEEcChhhcCCHHHHHhCCCcEEEecCCCCccc------------cCCCcEEEeccCCCcccHHHHHHHHHHH
Q 027835 49 SEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNL------------YKNSFTYHCLEDDKILQFDDAIQFLEQC 116 (218)
Q Consensus 49 ~~I~~~~lylG~~~~~~~~~~l~~~gI~~IInl~~~~~~~------------~~~~~~~~~ip~~~~~~~~~~~~fI~~~ 116 (218)
.+|-+ .++++++....+...++.+|++.|||..++.+.. ...++.|..+|.....--+..++.+.++
T Consensus 4 ~~I~d-~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~A 82 (130)
T COG3453 4 RRIND-RLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRA 82 (130)
T ss_pred eeccc-ceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHH
Confidence 35666 9999999999999999999999999987755431 2235789999876543333333333333
Q ss_pred -HhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhC
Q 027835 117 -ERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERR 161 (218)
Q Consensus 117 -~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~R 161 (218)
-..+++||.||+.| .||.++=..-. ...||+-++...+-+..-
T Consensus 83 l~eaegPVlayCrsG-tRs~~ly~~~~-~~~gm~~de~~a~g~a~G 126 (130)
T COG3453 83 LDEAEGPVLAYCRSG-TRSLNLYGLGE-LDGGMSRDEIEALGQAAG 126 (130)
T ss_pred HHHhCCCEEeeecCC-chHHHHHHHHH-HhcCCCHHHHHHHHHhhC
Confidence 34579999999999 68755443333 567999999888766553
No 31
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.70 E-value=6.8e-08 Score=84.82 Aligned_cols=83 Identities=14% Similarity=0.173 Sum_probs=60.5
Q ss_pred cEEEeccCCCcc-cHHHHHHHHHHHHh----------c----CCeEEEEcCCCCcHHHHHHHHHHHH-----hcCCCHHH
Q 027835 93 FTYHCLEDDKIL-QFDDAIQFLEQCER----------D----KACVLVHCMFGKNRSAAIVIAYLMK-----CKGWRLAQ 152 (218)
Q Consensus 93 ~~~~~ip~~~~~-~~~~~~~fI~~~~~----------~----~~~VLVHC~~G~sRS~~vv~ayLm~-----~~~~sl~~ 152 (218)
+.|..+|+...+ ....+++|+..... . .++|+|||.+|+||||++++.-.+. ...+++.+
T Consensus 205 ~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~ 284 (323)
T PHA02746 205 FWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGE 284 (323)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHH
Confidence 445556766654 35566666654332 1 2799999999999999988754432 34569999
Q ss_pred HHHHHHHhCCCccCCHHHHHHHH
Q 027835 153 SHQWVKERRPSVNLTEDVHQQLQ 175 (218)
Q Consensus 153 A~~~vr~~RP~i~pn~~f~~~L~ 175 (218)
++..+|..|+....+..++..+.
T Consensus 285 ~V~~lR~qR~~~Vqt~~QY~F~y 307 (323)
T PHA02746 285 IVLKIRKQRHSSVFLPEQYAFCY 307 (323)
T ss_pred HHHHHHhcccccCCCHHHHHHHH
Confidence 99999999999999998666654
No 32
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.62 E-value=1.6e-07 Score=82.06 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=46.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH-----hcCCCHHHHHHHHHHhCCCccCCHHHHHHH
Q 027835 121 ACVLVHCMFGKNRSAAIVIAYLMK-----CKGWRLAQSHQWVKERRPSVNLTEDVHQQL 174 (218)
Q Consensus 121 ~~VLVHC~~G~sRS~~vv~ayLm~-----~~~~sl~~A~~~vr~~RP~i~pn~~f~~~L 174 (218)
++|+|||.+|+||||+.++.-++. ....++.+++..+|..|+....+..++..+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 699999999999999988775432 346699999999999999999999877666
No 33
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=98.62 E-value=6.3e-08 Score=86.00 Aligned_cols=123 Identities=19% Similarity=0.258 Sum_probs=91.5
Q ss_pred hCCCcEEEecCCCC-----ccccCCCcEEEeccCC--------C-cccHHHHH-HHHHHHHhcCCeEEEEcCCCCcHHHH
Q 027835 72 TQGISRVLNTVPSC-----QNLYKNSFTYHCLEDD--------K-ILQFDDAI-QFLEQCERDKACVLVHCMFGKNRSAA 136 (218)
Q Consensus 72 ~~gI~~IInl~~~~-----~~~~~~~~~~~~ip~~--------~-~~~~~~~~-~fI~~~~~~~~~VLVHC~~G~sRS~~ 136 (218)
...|.-+|+++... +.....++.|+.+... . ...|..++ .|.++....++-|+|||++|++|++-
T Consensus 61 ~~~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~Nrtgy 140 (393)
T KOG2386|consen 61 NYKVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGY 140 (393)
T ss_pred CceEEEEEeccceeeeeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccce
Confidence 34577788887642 3345567777765432 1 22333333 45665666788999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCCCCCCC
Q 027835 137 IVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGSVDGSNPTPLPA 195 (218)
Q Consensus 137 vv~ayLm~~~~~sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~~l~~~~~~~~~~~~~~ 195 (218)
++++|||...+|+..+|++.+...||...-....+..|...+....... ++.+..+.+
T Consensus 141 LI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~~p~~-vs~p~~~~~ 198 (393)
T KOG2386|consen 141 LICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDIFPFK-VSCPSMPDW 198 (393)
T ss_pred eeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhccccccccc-ccCCCCcch
Confidence 9999999999999999999999999999989999999998877765444 455555543
No 34
>PHA02738 hypothetical protein; Provisional
Probab=98.54 E-value=4.5e-07 Score=79.56 Aligned_cols=84 Identities=12% Similarity=0.214 Sum_probs=59.6
Q ss_pred CcEEEeccCCCcc-cHHHHHHHHHHHHh-----------------cCCeEEEEcCCCCcHHHHHHHHHHH-----HhcCC
Q 027835 92 SFTYHCLEDDKIL-QFDDAIQFLEQCER-----------------DKACVLVHCMFGKNRSAAIVIAYLM-----KCKGW 148 (218)
Q Consensus 92 ~~~~~~ip~~~~~-~~~~~~~fI~~~~~-----------------~~~~VLVHC~~G~sRS~~vv~ayLm-----~~~~~ 148 (218)
++.|..+|+.+.| .-...++||....+ ..++|+|||.+|+||||+.++.-++ .....
T Consensus 181 h~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~v 260 (320)
T PHA02738 181 HFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDACATV 260 (320)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCc
Confidence 3455567776654 34455666544321 1368999999999999986655433 23456
Q ss_pred CHHHHHHHHHHhCCCccCCHHHHHHHH
Q 027835 149 RLAQSHQWVKERRPSVNLTEDVHQQLQ 175 (218)
Q Consensus 149 sl~~A~~~vr~~RP~i~pn~~f~~~L~ 175 (218)
++.+++..+|.+|+....+..++..+.
T Consensus 261 dv~~~V~~lR~qR~~~vqt~~QY~F~y 287 (320)
T PHA02738 261 SIPSIVSSIRNQRYYSLFIPFQYFFCY 287 (320)
T ss_pred CHHHHHHHHHhhhhhccCCHHHHHHHH
Confidence 999999999999999999998765544
No 35
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=98.53 E-value=1.2e-06 Score=72.57 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=84.9
Q ss_pred ccCCCCceEeCCcEEEcChhhcCCHHHHHhCCCcEEEecCCCCcc------ccCCCcEEEeccCCCc-------------
Q 027835 43 QVSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQN------LYKNSFTYHCLEDDKI------------- 103 (218)
Q Consensus 43 ~~~~~p~~I~~~~lylG~~~~~~~~~~l~~~gI~~IInl~~~~~~------~~~~~~~~~~ip~~~~------------- 103 (218)
..+..-+.+.+ .||.++++...+..+|+.++.++||.++++..+ +..++++++++.++..
T Consensus 55 ipPlnFs~V~~-~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~ 133 (249)
T KOG1572|consen 55 IPPLNFSMVDN-GLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPD 133 (249)
T ss_pred cCCcccccccc-ceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChH
Confidence 34444566777 999999999999999999999999999987432 2345678887755421
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 027835 104 LQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKER 160 (218)
Q Consensus 104 ~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~ 160 (218)
..+..+++++ ..+.+.++||||..|..|+++++.+.- +.++|++...++..+..
T Consensus 134 ~~i~~~l~~l--ld~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~f 187 (249)
T KOG1572|consen 134 HSIRKALKVL--LDKRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRF 187 (249)
T ss_pred HHHHHHHHHH--hcccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHh
Confidence 1344555542 334568999999999999999987755 77899988888765544
No 36
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=98.32 E-value=2.1e-06 Score=83.41 Aligned_cols=85 Identities=19% Similarity=0.334 Sum_probs=60.3
Q ss_pred cEEEeccCCCcc-cHHHHHHHH---HHHHhc-CCeEEEEcCCCCcHHHHHHHH----HHHH-hcCCCHHHHHHHHHHhCC
Q 027835 93 FTYHCLEDDKIL-QFDDAIQFL---EQCERD-KACVLVHCMFGKNRSAAIVIA----YLMK-CKGWRLAQSHQWVKERRP 162 (218)
Q Consensus 93 ~~~~~ip~~~~~-~~~~~~~fI---~~~~~~-~~~VLVHC~~G~sRS~~vv~a----yLm~-~~~~sl~~A~~~vr~~RP 162 (218)
+.|..+||.+.+ +....++|+ +..++. +.+|+|||.+|+||||+++++ ||+. ...+.+-+.+..+|.+|-
T Consensus 1031 LQYtaWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~ 1110 (1144)
T KOG0792|consen 1031 LQYTAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRA 1110 (1144)
T ss_pred eeecccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 345556776533 344455555 444554 569999999999999997643 3333 336689999999999999
Q ss_pred CccCCHHHHHHHHHH
Q 027835 163 SVNLTEDVHQQLQEY 177 (218)
Q Consensus 163 ~i~pn~~f~~~L~~~ 177 (218)
.+..+..++.++.+-
T Consensus 1111 ~mVQT~~QYkFVyev 1125 (1144)
T KOG0792|consen 1111 MMVQTLSQYKFVYEV 1125 (1144)
T ss_pred hhccchHHhhHHHHH
Confidence 999999977666543
No 37
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.25 E-value=3.2e-06 Score=71.63 Aligned_cols=120 Identities=16% Similarity=0.232 Sum_probs=77.0
Q ss_pred ceEeCCcEEEcChhhcCCHH--HHHhCCCcEEEecCC--CCcc-ccCCC---------cEEEeccCC--CcccHHHHHHH
Q 027835 49 SEILPDFLYLGSYDNASRSG--LLKTQGISRVLNTVP--SCQN-LYKNS---------FTYHCLEDD--KILQFDDAIQF 112 (218)
Q Consensus 49 ~~I~~~~lylG~~~~~~~~~--~l~~~gI~~IInl~~--~~~~-~~~~~---------~~~~~ip~~--~~~~~~~~~~f 112 (218)
..|.+...|.++.+...+.. .....++..++++.. +... ....+ +.....+.. +....+....+
T Consensus 48 ~~i~~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 127 (249)
T COG2365 48 LGIIPIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPTREDAAERLVEL 127 (249)
T ss_pred ccccceeEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCccchhhHHHHHHH
Confidence 33444467777777777665 677778888887765 1110 11111 111111111 12234555566
Q ss_pred HHHHHhcC-CeEEEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCH
Q 027835 113 LEQCERDK-ACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTE 168 (218)
Q Consensus 113 I~~~~~~~-~~VLVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~RP~i~pn~ 168 (218)
+.-.+.++ ++||+||.+|..|+|.+++.|++...+.....+-++++..++......
T Consensus 128 ~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 128 LQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred HHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 66555555 999999999999999999999999888877788888888886555444
No 38
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.22 E-value=1.9e-06 Score=72.52 Aligned_cols=91 Identities=12% Similarity=0.147 Sum_probs=66.4
Q ss_pred CcEEEeccCCCcccHHHHHHHHHHHHh---cCCeEEEEcCCCCcHHHHHHHHHHHHhc-CCC-------------HHHHH
Q 027835 92 SFTYHCLEDDKILQFDDAIQFLEQCER---DKACVLVHCMFGKNRSAAIVIAYLMKCK-GWR-------------LAQSH 154 (218)
Q Consensus 92 ~~~~~~ip~~~~~~~~~~~~fI~~~~~---~~~~VLVHC~~G~sRS~~vv~ayLm~~~-~~s-------------l~~A~ 154 (218)
++.|..+.|-..+.+....++++.... +.++++|||.||+||+|+.++.-.+... .-+ ..+.+
T Consensus 187 hf~y~nW~D~~~p~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV 266 (302)
T COG5599 187 HFQYINWVDFNVPDIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIV 266 (302)
T ss_pred EEEecCccccCCcCHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHH
Confidence 445555566666778888888887663 5689999999999999997765444322 211 45667
Q ss_pred HHHHHhCCCccCCHHHHHHHHHHHHHHh
Q 027835 155 QWVKERRPSVNLTEDVHQQLQEYEQKIF 182 (218)
Q Consensus 155 ~~vr~~RP~i~pn~~f~~~L~~~e~~l~ 182 (218)
..+|++|-.+.-|..|+..|..--..|.
T Consensus 267 ~~LRsQRmkmVQn~~Qf~flY~~~~~l~ 294 (302)
T COG5599 267 LSLRSQRMKMVQNKTQFKFLYDAFLELN 294 (302)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 7889999888888888888887766665
No 39
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.10 E-value=6.6e-05 Score=68.59 Aligned_cols=125 Identities=19% Similarity=0.214 Sum_probs=91.2
Q ss_pred CCcEEEcChhhcCCH----HHHHhCCCcEEEecCCCCc--cccCCCcEEEeccCCC--------cccHHHHHHHHHHHHh
Q 027835 53 PDFLYLGSYDNASRS----GLLKTQGISRVLNTVPSCQ--NLYKNSFTYHCLEDDK--------ILQFDDAIQFLEQCER 118 (218)
Q Consensus 53 ~~~lylG~~~~~~~~----~~l~~~gI~~IInl~~~~~--~~~~~~~~~~~ip~~~--------~~~~~~~~~fI~~~~~ 118 (218)
+.+||+|........ ..-....+..||++..... ........+++++... ...+.+++.|+...+.
T Consensus 293 ~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~ 372 (451)
T PF04179_consen 293 TTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLS 372 (451)
T ss_pred CCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 339999987752211 1123456788999876543 2344566777776653 2468899999999888
Q ss_pred c--CCeEEEEcCCCCcHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHhCCCccCCHHHHHHHHHH
Q 027835 119 D--KACVLVHCMFGKNRSAAIVIAYLMKCKGWR----------------LAQSHQWVKERRPSVNLTEDVHQQLQEY 177 (218)
Q Consensus 119 ~--~~~VLVHC~~G~sRS~~vv~ayLm~~~~~s----------------l~~A~~~vr~~RP~i~pn~~f~~~L~~~ 177 (218)
+ +.+|||+|..|...|+.+++|.|+..++.. ..+-+.+|-..+|.+.|+...++++-.|
T Consensus 373 ~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 373 SDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred ccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 7 899999999999999999999999977541 3455667777788888888888777655
No 40
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.98 E-value=1e-05 Score=63.38 Aligned_cols=54 Identities=19% Similarity=0.370 Sum_probs=40.3
Q ss_pred CCCcEEEeccCCC-----cccHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHH
Q 027835 90 KNSFTYHCLEDDK-----ILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMK 144 (218)
Q Consensus 90 ~~~~~~~~ip~~~-----~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayLm~ 144 (218)
..++.|+.+|+.+ ...|+..++|+..+ .++..+.+||.+|.|||.+.++.|.|.
T Consensus 90 ~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPDPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HTT-EEEEEEE-TTS---HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999998765 24688888888877 667899999999999999888877764
No 41
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=97.95 E-value=3e-05 Score=69.58 Aligned_cols=82 Identities=24% Similarity=0.447 Sum_probs=57.1
Q ss_pred cEEEeccCCCccc-HHHHHHHHHHHHh------cCCeEEEEcCCCCcHHHHHH-HHHHH---HhcC----CCHHHHHHHH
Q 027835 93 FTYHCLEDDKILQ-FDDAIQFLEQCER------DKACVLVHCMFGKNRSAAIV-IAYLM---KCKG----WRLAQSHQWV 157 (218)
Q Consensus 93 ~~~~~ip~~~~~~-~~~~~~fI~~~~~------~~~~VLVHC~~G~sRS~~vv-~ayLm---~~~~----~sl~~A~~~v 157 (218)
++|..+|+...|. ---++.|+++.-. ..++|.|||.+|+||+++++ +-.|| ...| +++...+++|
T Consensus 417 yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmV 496 (600)
T KOG0790|consen 417 YHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMV 496 (600)
T ss_pred hheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHH
Confidence 4566677776543 2344566665432 35799999999999999954 33333 2334 4899999999
Q ss_pred HHhCCCccCCHHHHHHH
Q 027835 158 KERRPSVNLTEDVHQQL 174 (218)
Q Consensus 158 r~~RP~i~pn~~f~~~L 174 (218)
|+.|....-++.+++.+
T Consensus 497 RsqRSGmVQTEaQYkFi 513 (600)
T KOG0790|consen 497 RSQRSGMVQTEAQYKFI 513 (600)
T ss_pred HHHhcchhhhHHhHHHH
Confidence 99999888888755543
No 42
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.90 E-value=3.5e-05 Score=69.32 Aligned_cols=86 Identities=14% Similarity=0.166 Sum_probs=60.2
Q ss_pred CcEEEeccCCCccc-HHHHHHHHHH----HHhcCCeEEEEcCCCCcHHHHHHHHH-HHHh--c---CCCHHHHHHHHHHh
Q 027835 92 SFTYHCLEDDKILQ-FDDAIQFLEQ----CERDKACVLVHCMFGKNRSAAIVIAY-LMKC--K---GWRLAQSHQWVKER 160 (218)
Q Consensus 92 ~~~~~~ip~~~~~~-~~~~~~fI~~----~~~~~~~VLVHC~~G~sRS~~vv~ay-Lm~~--~---~~sl~~A~~~vr~~ 160 (218)
+++|..+|+...+. ...++.++.. .....+++.|||.+|+||||++++.- .+.. . .....+.+..+|..
T Consensus 266 ~~~~~~WPd~~~p~~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~q 345 (415)
T KOG0789|consen 266 HYHYINWPDHGAPDSVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQ 345 (415)
T ss_pred EEeeCCCccccCCcchHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 34555667775543 6777777752 22345899999999999999988544 2222 2 23588889999999
Q ss_pred CCCccCCHHHHHHHHHH
Q 027835 161 RPSVNLTEDVHQQLQEY 177 (218)
Q Consensus 161 RP~i~pn~~f~~~L~~~ 177 (218)
|+.+..+..|+..+..-
T Consensus 346 R~~~vqt~~Qy~f~~~~ 362 (415)
T KOG0789|consen 346 RPGAVQSPLQYLFIYAA 362 (415)
T ss_pred hhhcccchhHHHHHHHH
Confidence 99888888876555543
No 43
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=97.54 E-value=0.00045 Score=53.51 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhc---CCeEEEEcCCCCc--H--HHHHHHHHHHHhcCCCHHHHHHHHHHhCCCc
Q 027835 108 DAIQFLEQCERD---KACVLVHCMFGKN--R--SAAIVIAYLMKCKGWRLAQSHQWVKERRPSV 164 (218)
Q Consensus 108 ~~~~fI~~~~~~---~~~VLVHC~~G~s--R--S~~vv~ayLm~~~~~sl~~A~~~vr~~RP~i 164 (218)
..+..+++.++. .++.+|||++.-. | ++.++.+|+|..++||+++|++-+...-|..
T Consensus 51 rfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p~~ 114 (141)
T PF14671_consen 51 RFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQPPF 114 (141)
T ss_dssp HHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT---
T ss_pred HHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCC
Confidence 333444444443 5788888887655 3 3678999999999999999999998876433
No 44
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=97.42 E-value=0.0011 Score=58.28 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=65.8
Q ss_pred ccCCCcEEEeccCCCcc----cHHHHHHHHHHHHhc-CCeEEEEcCCCCcHHHHHHHHH-HHHhcC----CCHHHHHHHH
Q 027835 88 LYKNSFTYHCLEDDKIL----QFDDAIQFLEQCERD-KACVLVHCMFGKNRSAAIVIAY-LMKCKG----WRLAQSHQWV 157 (218)
Q Consensus 88 ~~~~~~~~~~ip~~~~~----~~~~~~~fI~~~~~~-~~~VLVHC~~G~sRS~~vv~ay-Lm~~~~----~sl~~A~~~v 157 (218)
....+++|..+|+...+ .+-+.+....+.... .++++|||.+|+||+|+.++.- |++..+ .+.-..+-.+
T Consensus 250 r~ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~l 329 (374)
T KOG0791|consen 250 RKIRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLEL 329 (374)
T ss_pred ceeEEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHh
Confidence 34456788888887654 233334444444433 5799999999999999977654 333332 3566777788
Q ss_pred HHhCCCccCCHHHHHHHHHHHHHHhC
Q 027835 158 KERRPSVNLTEDVHQQLQEYEQKIFG 183 (218)
Q Consensus 158 r~~RP~i~pn~~f~~~L~~~e~~l~~ 183 (218)
|..|+....|..|+-.|..--....+
T Consensus 330 R~~R~~mVqte~Qyvfl~~c~~~~l~ 355 (374)
T KOG0791|consen 330 RSARMLMVQTEDQYVFLHQCVLESLQ 355 (374)
T ss_pred hhccccccchHHHHHHHHHHHHHHHh
Confidence 89999999999999888865444433
No 45
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.40 E-value=0.00046 Score=68.01 Aligned_cols=95 Identities=16% Similarity=0.243 Sum_probs=68.1
Q ss_pred cEEEeccCCCccc-HHHHHHHHHHHHhcC----CeEEEEcCCCCcHHHHH-----HHHHHHHhcCCCHHHHHHHHHHhCC
Q 027835 93 FTYHCLEDDKILQ-FDDAIQFLEQCERDK----ACVLVHCMFGKNRSAAI-----VIAYLMKCKGWRLAQSHQWVKERRP 162 (218)
Q Consensus 93 ~~~~~ip~~~~~~-~~~~~~fI~~~~~~~----~~VLVHC~~G~sRS~~v-----v~ayLm~~~~~sl~~A~~~vr~~RP 162 (218)
+++..+|+...+. -...++|+++...-. |+++|||.+|+||||+. ++-.++.....+.-.-+..+|.+|+
T Consensus 698 fhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~ 777 (1087)
T KOG4228|consen 698 FHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRN 777 (1087)
T ss_pred eeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccc
Confidence 3344456666553 367788888877643 99999999999999983 4555666667788999999999999
Q ss_pred CccCCHHHHHHHHH--HHHHHhCCCCC
Q 027835 163 SVNLTEDVHQQLQE--YEQKIFGSVDG 187 (218)
Q Consensus 163 ~i~pn~~f~~~L~~--~e~~l~~~~~~ 187 (218)
...-+..++-.+.+ .|..+.+.+.+
T Consensus 778 ~mVQt~eQYiFi~~AllE~~~~G~T~i 804 (1087)
T KOG4228|consen 778 NMVQTEEQYIFIHEALLEACLCGDTEV 804 (1087)
T ss_pred cccccHHHHHHHHHHHHHHHhcCCccc
Confidence 88888887666553 24444444443
No 46
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.00 E-value=0.0024 Score=60.46 Aligned_cols=83 Identities=18% Similarity=0.388 Sum_probs=54.6
Q ss_pred cEEEeccCCCcc-cHHHHHHHHHHHHh----cCCeEEEEcCCCCcHHHHHHH-----HHHHH-hcCCCHHHHHHHHHHhC
Q 027835 93 FTYHCLEDDKIL-QFDDAIQFLEQCER----DKACVLVHCMFGKNRSAAIVI-----AYLMK-CKGWRLAQSHQWVKERR 161 (218)
Q Consensus 93 ~~~~~ip~~~~~-~~~~~~~fI~~~~~----~~~~VLVHC~~G~sRS~~vv~-----ayLm~-~~~~sl~~A~~~vr~~R 161 (218)
|+|+.+|....+ .-..+++|=++.-+ ...+|+|||..|-|||++-++ .-|.+ ...++....++++|.+|
T Consensus 895 FHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR 974 (1004)
T KOG0793|consen 895 FHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQR 974 (1004)
T ss_pred eeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcC
Confidence 555556666554 33445566544332 357899999999999998432 22222 11347888999999999
Q ss_pred CCccCCHHHHHHHH
Q 027835 162 PSVNLTEDVHQQLQ 175 (218)
Q Consensus 162 P~i~pn~~f~~~L~ 175 (218)
|.+.-+..+++...
T Consensus 975 ~GmVaTkdQFef~l 988 (1004)
T KOG0793|consen 975 PGMVATKDQFEFAL 988 (1004)
T ss_pred CcceeehhhhHHHH
Confidence 98877776665544
No 47
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.74 E-value=0.022 Score=56.59 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=44.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH----hc-CCCHHHHHHHHHHhCCCccCCHHHHHHHHH
Q 027835 120 KACVLVHCMFGKNRSAAIVIAYLMK----CK-GWRLAQSHQWVKERRPSVNLTEDVHQQLQE 176 (218)
Q Consensus 120 ~~~VLVHC~~G~sRS~~vv~ayLm~----~~-~~sl~~A~~~vr~~RP~i~pn~~f~~~L~~ 176 (218)
.+++.|||.+|.+||++.+++-++. .. -++.-++++.+|..||.+.-..++++.+.+
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t~~QY~fcYd 1079 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVDTSDQYQFCYD 1079 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccCcHHHHHHHHH
Confidence 5899999999999998866544433 22 348899999999999988888877766654
No 48
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.90 E-value=0.1 Score=48.97 Aligned_cols=36 Identities=36% Similarity=0.614 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHH-HHHH
Q 027835 108 DAIQFLEQCERDKACVLVHCMFGKNRSAAIVI-AYLM 143 (218)
Q Consensus 108 ~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~-ayLm 143 (218)
.++...++....+.+|||||..|..|++-+++ |-||
T Consensus 362 ga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~Ll 398 (717)
T KOG4471|consen 362 GAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLL 398 (717)
T ss_pred HHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHH
Confidence 44555666666788999999999999988664 4444
No 49
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=93.14 E-value=0.37 Score=34.39 Aligned_cols=28 Identities=36% Similarity=0.470 Sum_probs=19.0
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 118 ~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
.++.+|+|+|..| .||... +.+| ...|.
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L-~~~G~ 86 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYL-KERGF 86 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHH-HHhCC
Confidence 4568999999988 677543 3344 44555
No 50
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=89.85 E-value=0.76 Score=40.99 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=18.1
Q ss_pred HHHHhcCCeEEEEcCCCCcHHHHHH
Q 027835 114 EQCERDKACVLVHCMFGKNRSAAIV 138 (218)
Q Consensus 114 ~~~~~~~~~VLVHC~~G~sRS~~vv 138 (218)
+....+|..|||||..|..|++-++
T Consensus 225 ~~l~~~~~~Vlvh~~dGwDrt~q~~ 249 (353)
T PF06602_consen 225 DLLHDEGSSVLVHCSDGWDRTSQLS 249 (353)
T ss_dssp HHHHTT--EEEEECTTSSSHHHHHH
T ss_pred HHhhccCceEEEEcCCCCcccHHHH
Confidence 3333578999999999999996655
No 51
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=88.16 E-value=1.2 Score=31.80 Aligned_cols=68 Identities=16% Similarity=0.070 Sum_probs=36.9
Q ss_pred HHhCCCcEEEecCCCCccccCCCcE-EEeccCCCcccHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHH
Q 027835 70 LKTQGISRVLNTVPSCQNLYKNSFT-YHCLEDDKILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMK 144 (218)
Q Consensus 70 l~~~gI~~IInl~~~~~~~~~~~~~-~~~ip~~~~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayLm~ 144 (218)
+...+-..||++....+-....... ..++|............ ....++++|+|.+|. || ..++.+|..
T Consensus 15 ~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~~-----~~~~~~ivv~C~~G~-rS-~~aa~~L~~ 83 (110)
T COG0607 15 LLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLE-----LPDDDPIVVYCASGV-RS-AAAAAALKL 83 (110)
T ss_pred hhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhcccc-----cCCCCeEEEEeCCCC-Ch-HHHHHHHHH
Confidence 3444556788887653211112222 44555554433222211 666799999999994 66 444455555
No 52
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=86.58 E-value=1.4 Score=41.51 Aligned_cols=29 Identities=31% Similarity=0.556 Sum_probs=21.9
Q ss_pred HHHHHHHHh-cCCeEEEEcCCCCcHHHHHH
Q 027835 110 IQFLEQCER-DKACVLVHCMFGKNRSAAIV 138 (218)
Q Consensus 110 ~~fI~~~~~-~~~~VLVHC~~G~sRS~~vv 138 (218)
..+|.+++. +|-.|||||..|..|+.-|+
T Consensus 333 a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~ 362 (573)
T KOG1089|consen 333 AAEIAKCLSSEGASVLVHCSDGWDRTCQVS 362 (573)
T ss_pred HHHHHHHHHhCCCeEEEEccCCcchhHHHH
Confidence 344555555 56899999999999997665
No 53
>PRK01415 hypothetical protein; Validated
Probab=86.25 E-value=1 Score=38.17 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=19.3
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 118 ~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
.++++|+++|++| .|| ..++++|.. .|.
T Consensus 169 ~k~k~Iv~yCtgG-iRs-~kAa~~L~~-~Gf 196 (247)
T PRK01415 169 LKGKKIAMVCTGG-IRC-EKSTSLLKS-IGY 196 (247)
T ss_pred cCCCeEEEECCCC-hHH-HHHHHHHHH-cCC
Confidence 4678999999999 566 444555544 455
No 54
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=84.55 E-value=4.7 Score=30.09 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=20.8
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 117 ERDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 117 ~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
+.++.+|+|+|..|-.||...+ +++...|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA--WLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH--HHHHHcCC
Confidence 4567899999985545665333 77776666
No 55
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=83.90 E-value=3.5 Score=29.68 Aligned_cols=64 Identities=14% Similarity=0.062 Sum_probs=32.8
Q ss_pred cEEEecCCCCccccCCCcEEEeccCCCcccHHHHHHHHHHHH-hcCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 76 SRVLNTVPSCQNLYKNSFTYHCLEDDKILQFDDAIQFLEQCE-RDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 76 ~~IInl~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~fI~~~~-~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
..|||+.+..+ +.. -++|....-.+.+..+.+.... ..+.+|+|||..|. ||. .++. +++..|.
T Consensus 27 ~~liDvR~~~e-~~~-----ghIpgainip~~~l~~~~~~l~~~~~~~ivv~C~~G~-rs~-~a~~-~L~~~G~ 91 (109)
T cd01533 27 LVVLDGRRFDE-YRK-----MTIPGSVSCPGAELVLRVGELAPDPRTPIVVNCAGRT-RSI-IGAQ-SLINAGL 91 (109)
T ss_pred cEEEeCCCHHH-Hhc-----CcCCCceeCCHHHHHHHHHhcCCCCCCeEEEECCCCc-hHH-HHHH-HHHHCCC
Confidence 35888876433 111 1333322222333334444432 24579999999995 763 3333 3444565
No 56
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=81.99 E-value=6.1 Score=28.98 Aligned_cols=29 Identities=31% Similarity=0.358 Sum_probs=18.5
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 117 ERDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 117 ~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
.....+|+|+|..| .||...+ .+ ++..|.
T Consensus 61 ~~~~~~ivv~C~~G-~rs~~aa-~~-L~~~G~ 89 (117)
T cd01522 61 VGKDRPVLLLCRSG-NRSIAAA-EA-AAQAGF 89 (117)
T ss_pred CCCCCeEEEEcCCC-ccHHHHH-HH-HHHCCC
Confidence 34678999999998 5665433 33 344454
No 57
>PRK05320 rhodanese superfamily protein; Provisional
Probab=79.70 E-value=3.6 Score=35.00 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=18.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 119 ~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
++++|+++|++| .|| ..++++|.. .|.
T Consensus 174 kdk~IvvyC~~G-~Rs-~~Aa~~L~~-~Gf 200 (257)
T PRK05320 174 AGKTVVSFCTGG-IRC-EKAAIHMQE-VGI 200 (257)
T ss_pred CCCeEEEECCCC-HHH-HHHHHHHHH-cCC
Confidence 568999999999 466 345556654 454
No 58
>PLN02160 thiosulfate sulfurtransferase
Probab=77.95 E-value=4.8 Score=30.62 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=19.9
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 027835 117 ERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (218)
Q Consensus 117 ~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~s 149 (218)
+..+.+|+|||..| .||...+ .++...|.+
T Consensus 78 ~~~~~~IivyC~sG-~RS~~Aa--~~L~~~G~~ 107 (136)
T PLN02160 78 LNPADDILVGCQSG-ARSLKAT--TELVAAGYK 107 (136)
T ss_pred cCCCCcEEEECCCc-HHHHHHH--HHHHHcCCC
Confidence 35678999999999 6776443 333445553
No 59
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=77.28 E-value=3.1 Score=36.45 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=18.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 119 ~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
++++|+|+|.+| .||. .+++||.. .|.
T Consensus 170 kdk~IvvyC~~G-~Rs~-~aa~~L~~-~Gf 196 (314)
T PRK00142 170 KDKKVVMYCTGG-IRCE-KASAWMKH-EGF 196 (314)
T ss_pred CcCeEEEECCCC-cHHH-HHHHHHHH-cCC
Confidence 568999999998 5673 44556654 454
No 60
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=75.12 E-value=10 Score=26.67 Aligned_cols=28 Identities=25% Similarity=0.637 Sum_probs=18.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 027835 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (218)
Q Consensus 119 ~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~s 149 (218)
++.+|+|+|..| .||... +.+|.+ .|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~~~-~~~l~~-~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV-AQWLLR-QGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHHH-HHHHHH-cCCc
Confidence 468999999998 576443 344444 5553
No 61
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=74.34 E-value=6.4 Score=25.16 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHh
Q 027835 135 AAIVIAYLMKCKGWRLAQSHQWVKER 160 (218)
Q Consensus 135 ~~vv~ayLm~~~~~sl~~A~~~vr~~ 160 (218)
..-+.+.||..+|++.++|++.++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 45678899999999999999999876
No 62
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=73.74 E-value=12 Score=26.21 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=18.1
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 118 ~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
..+.+|+|+|..|. ||.. ++..| ...|.
T Consensus 59 ~~~~~ivv~C~~G~-rs~~-aa~~L-~~~G~ 86 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQF-VAELL-AERGY 86 (100)
T ss_pred CCCCeEEEEcCCCC-cHHH-HHHHH-HHcCc
Confidence 45689999999994 7643 33333 44555
No 63
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=71.41 E-value=9 Score=27.94 Aligned_cols=41 Identities=20% Similarity=0.057 Sum_probs=24.4
Q ss_pred HHHHHHHHH-HHhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 027835 107 DDAIQFLEQ-CERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (218)
Q Consensus 107 ~~~~~fI~~-~~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~s 149 (218)
+++.+++.. .+..+.+|+|+|..| +++++.++..| +..|++
T Consensus 65 ~~~~~~~~~~~~~~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 65 EEFAELLGSLGISNDDTVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 444444433 234578999999998 55555554444 445653
No 64
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=69.53 E-value=12 Score=29.48 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=21.2
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 118 ~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
.++.+|+|+|..|..||.. +++++...|.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~ 142 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGY 142 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCC
Confidence 3668999999998877765 4555565665
No 65
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=69.44 E-value=7.4 Score=27.16 Aligned_cols=28 Identities=11% Similarity=-0.058 Sum_probs=18.4
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 118 ~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
..+.+|+|+|..| .||.. ++.+| ...|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~-~~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARF-AAQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHH-HHHHH-HHcCC
Confidence 4567899999877 57744 34445 44554
No 66
>smart00400 ZnF_CHCC zinc finger.
Probab=68.00 E-value=5.7 Score=25.21 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=24.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHH
Q 027835 124 LVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWV 157 (218)
Q Consensus 124 LVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~v 157 (218)
..||.+ -+..+- ++.++|+..++++.+|++.+
T Consensus 23 ~~~Cf~-cg~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 478874 345554 46788888999999999875
No 67
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=66.81 E-value=2.6 Score=31.25 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=32.9
Q ss_pred cCCCccccCccccc-cCccccccCCCCCCCcccccccccCCC
Q 027835 7 ENPCSVCGHYHKYE-EGEVCGICGHRSASSAEKTTTLQVSAF 47 (218)
Q Consensus 7 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (218)
.-.|..||..++.- +-+.|+-|++++-.|.......+|..|
T Consensus 69 ~V~CP~C~K~TKmLGr~D~CM~C~~pLTLd~~legkef~~~y 110 (114)
T PF11023_consen 69 QVECPNCGKQTKMLGRVDACMHCKEPLTLDPSLEGKEFDEKY 110 (114)
T ss_pred eeECCCCCChHhhhchhhccCcCCCcCccCchhhcchhhHhh
Confidence 34699999999977 788999999999888776666665544
No 68
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=65.34 E-value=13 Score=27.30 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=18.3
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 118 ~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
..+++|+|+|..|. ||...+ . .+...|.
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa-~-~L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAV-R-KLKELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHH-H-HHHHcCC
Confidence 45789999999994 765333 2 3444555
No 69
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=61.72 E-value=9 Score=32.71 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=22.6
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 027835 128 MFGKNRSAAIVIAYLMKCKGWRLAQSHQW 156 (218)
Q Consensus 128 ~~G~sRS~~vv~ayLm~~~~~sl~~A~~~ 156 (218)
-=|+|||++.+.+-++. |++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~~--G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLLL--GLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHHC--CCCHHHHHHH
Confidence 46999999999887766 8988888875
No 70
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=60.73 E-value=24 Score=28.75 Aligned_cols=38 Identities=21% Similarity=0.104 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHH
Q 027835 104 LQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMK 144 (218)
Q Consensus 104 ~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayLm~ 144 (218)
+.++++++.+.+.+.++++|++. |.|+|++++..+-+.
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~~ 62 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAAS 62 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHHH
Confidence 56788889999999999999998 888998877554443
No 71
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=59.93 E-value=5.7 Score=22.89 Aligned_cols=23 Identities=48% Similarity=0.957 Sum_probs=17.1
Q ss_pred CCccccCccccc-cCccccccCCC
Q 027835 9 PCSVCGHYHKYE-EGEVCGICGHR 31 (218)
Q Consensus 9 ~~~~~~~~~~~~-~~~~~~~~~~~ 31 (218)
.|.+||+..+-+ .-+.|-+|++.
T Consensus 4 ~C~~CG~i~~g~~~p~~CP~Cg~~ 27 (34)
T cd00729 4 VCPVCGYIHEGEEAPEKCPICGAP 27 (34)
T ss_pred ECCCCCCEeECCcCCCcCcCCCCc
Confidence 699999886543 45688888875
No 72
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=59.27 E-value=20 Score=27.35 Aligned_cols=24 Identities=29% Similarity=0.188 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCC
Q 027835 106 FDDAIQFLEQCERDKACVLVHCMF 129 (218)
Q Consensus 106 ~~~~~~fI~~~~~~~~~VLVHC~~ 129 (218)
..-+++.++++.++|.+|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 577789999999999999999965
No 73
>KOG4080 consensus Mitochondrial ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=59.21 E-value=3.6 Score=32.60 Aligned_cols=25 Identities=28% Similarity=0.737 Sum_probs=21.3
Q ss_pred cCCCccccCccccccCccccccCCCCC
Q 027835 7 ENPCSVCGHYHKYEEGEVCGICGHRSA 33 (218)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (218)
-+.|..||||+. .+.+|+.|-...-
T Consensus 93 l~~CP~CGh~k~--a~~LC~~Cy~kV~ 117 (176)
T KOG4080|consen 93 LNTCPACGHIKP--AHTLCDYCYAKVH 117 (176)
T ss_pred cccCcccCcccc--ccccHHHHHHHHH
Confidence 589999999999 9999999877543
No 74
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=58.18 E-value=9.5 Score=32.88 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=21.8
Q ss_pred CCCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 027835 129 FGKNRSAAIVIAYLMKCKGWRLAQSHQW 156 (218)
Q Consensus 129 ~G~sRS~~vv~ayLm~~~~~sl~~A~~~ 156 (218)
=|+|||++.+.+-|+. |++-++|.++
T Consensus 166 PGiSRSG~TI~a~l~~--G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLLL--GLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 4999999988887766 8998888875
No 75
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=57.20 E-value=10 Score=32.30 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=21.7
Q ss_pred CCCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 027835 129 FGKNRSAAIVIAYLMKCKGWRLAQSHQW 156 (218)
Q Consensus 129 ~G~sRS~~vv~ayLm~~~~~sl~~A~~~ 156 (218)
=|+|||++.+.+-|+. |++-++|.++
T Consensus 160 PGiSRSG~TI~a~l~~--G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLFI--GLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 4999999988887766 8888888775
No 76
>PRK02935 hypothetical protein; Provisional
Probab=57.15 E-value=8.8 Score=28.15 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=29.6
Q ss_pred CCccccCccccc-cCccccccCCCCCCCccccccccc
Q 027835 9 PCSVCGHYHKYE-EGEVCGICGHRSASSAEKTTTLQV 44 (218)
Q Consensus 9 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 44 (218)
-|..|+...|.- +-+.|+-|++++-.|.....+.++
T Consensus 72 ~CP~C~K~TKmLGrvD~CM~C~~PLTLd~~legkefd 108 (110)
T PRK02935 72 ICPSCEKPTKMLGRVDACMHCNQPLTLDRSLEGKEFD 108 (110)
T ss_pred ECCCCCchhhhccceeecCcCCCcCCcCccccccCcC
Confidence 599999999987 889999999998887776655443
No 77
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=56.31 E-value=11 Score=32.35 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=21.8
Q ss_pred CCCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 027835 129 FGKNRSAAIVIAYLMKCKGWRLAQSHQW 156 (218)
Q Consensus 129 ~G~sRS~~vv~ayLm~~~~~sl~~A~~~ 156 (218)
=|+|||++.+.+-|+. |++-++|.++
T Consensus 164 PGiSRSG~TI~~~l~~--G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLLL--GLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHHc--CCCHHHHHHH
Confidence 5999999988887665 8998888875
No 78
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=55.55 E-value=37 Score=23.21 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=17.5
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 117 ERDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 117 ~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
+..+.+|+|+|..|. ||. .+ +..++..|.
T Consensus 53 ~~~~~~ivv~c~~g~-~s~-~a-~~~l~~~G~ 81 (96)
T cd01444 53 LDRDRPVVVYCYHGN-SSA-QL-AQALREAGF 81 (96)
T ss_pred cCCCCCEEEEeCCCC-hHH-HH-HHHHHHcCC
Confidence 446789999999663 432 23 344444554
No 79
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=54.58 E-value=30 Score=27.11 Aligned_cols=30 Identities=10% Similarity=0.166 Sum_probs=25.3
Q ss_pred CCcccHHHHHHHHHHHHhcCCeEEEEcCCC
Q 027835 101 DKILQFDDAIQFLEQCERDKACVLVHCMFG 130 (218)
Q Consensus 101 ~~~~~~~~~~~fI~~~~~~~~~VLVHC~~G 130 (218)
...+.+.-++++++++.++|.+|+|+|...
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 445667788999999999999999999654
No 80
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=54.56 E-value=23 Score=24.55 Aligned_cols=29 Identities=17% Similarity=0.065 Sum_probs=18.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 119 ~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
+..+|+|+|..|...++..++..| ...|.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L-~~~G~ 77 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRL-SELGY 77 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHH-HHcCc
Confidence 367999999998544444444444 44444
No 81
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=54.46 E-value=40 Score=24.19 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=13.6
Q ss_pred cCCeEEEEcCCCCcHHHHHH
Q 027835 119 DKACVLVHCMFGKNRSAAIV 138 (218)
Q Consensus 119 ~~~~VLVHC~~G~sRS~~vv 138 (218)
...+|+|||..+-.||...+
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa 80 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAA 80 (113)
T ss_pred CCCeEEEEeecCCcchHHHH
Confidence 35789999984445665543
No 82
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=53.78 E-value=52 Score=29.25 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=19.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 119 ~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
++.+|+|+|..|-.||..++ +++...|+
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa--~~L~~~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ--QWLKEAGI 114 (345)
T ss_pred CCCeEEEEECCCChHHHHHH--HHHHHcCC
Confidence 56899999976657886653 34444554
No 83
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=53.70 E-value=15 Score=26.21 Aligned_cols=36 Identities=19% Similarity=0.509 Sum_probs=24.7
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhC
Q 027835 124 LVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERR 161 (218)
Q Consensus 124 LVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~R 161 (218)
..||.+ -+.++-+ +.++|...++++.+|++.+.+.-
T Consensus 54 ~~~Cf~-Cg~~Gd~-i~~v~~~~~~~f~eAv~~l~~~~ 89 (97)
T PF01807_consen 54 RFKCFG-CGKGGDV-IDFVMKYEGCSFKEAVKWLAEEF 89 (97)
T ss_dssp EEEETT-T--EE-H-HHHHHHHHT--HHHHHHHHHHHH
T ss_pred eEEECC-CCCCCcH-HhHHHHHhCCCHHHHHHHHHHHh
Confidence 688884 5666644 67789999999999999987754
No 84
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=53.17 E-value=44 Score=23.95 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=16.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 119 ~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
.+.+|+|+|..|. ||... +..| ...|.
T Consensus 57 ~~~~vvlyC~~G~-rS~~a-a~~L-~~~G~ 83 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMA-KDIL-LDMGY 83 (101)
T ss_pred CCCeEEEEeCCCH-HHHHH-HHHH-HHcCC
Confidence 4568999999984 66444 3333 33454
No 85
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=53.04 E-value=49 Score=26.33 Aligned_cols=70 Identities=20% Similarity=0.223 Sum_probs=44.8
Q ss_pred CCCceEeCCcEEEcChhhcCCHHH--HHhCCCcEEE-ecCCCCccccCCCcEEEeccCCCcccHHHHHHHHHHHHhcCC-
Q 027835 46 AFPSEILPDFLYLGSYDNASRSGL--LKTQGISRVL-NTVPSCQNLYKNSFTYHCLEDDKILQFDDAIQFLEQCERDKA- 121 (218)
Q Consensus 46 ~~p~~I~~~~lylG~~~~~~~~~~--l~~~gI~~II-nl~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~fI~~~~~~~~- 121 (218)
.-|+-..| ++|+-+..+. +.+. |++.||+.|| |..+.... ......-++..+++++..+.++
T Consensus 12 ~~p~l~~P-~l~V~si~~I-~~~~~~Lk~~Gik~li~DkDNTL~~------------~~~~~i~~~~~~~~~~l~~~~~~ 77 (168)
T PF09419_consen 12 RNPSLLLP-HLYVPSIRDI-DFEANHLKKKGIKALIFDKDNTLTP------------PYEDEIPPEYAEWLNELKKQFGK 77 (168)
T ss_pred cCccccCC-CEEcCChhhC-CcchhhhhhcCceEEEEcCCCCCCC------------CCcCcCCHHHHHHHHHHHHHCCC
Confidence 45788889 9999887654 5556 9999999998 22222110 0112223456667777777665
Q ss_pred -eEEEEcCC
Q 027835 122 -CVLVHCMF 129 (218)
Q Consensus 122 -~VLVHC~~ 129 (218)
+|+|-...
T Consensus 78 ~~v~IvSNs 86 (168)
T PF09419_consen 78 DRVLIVSNS 86 (168)
T ss_pred CeEEEEECC
Confidence 58888875
No 86
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=52.90 E-value=42 Score=24.26 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=16.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 119 ~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
.+.+|+|+|..| .||... +..|. ..|.
T Consensus 59 ~~~~IVlyC~~G-~rS~~a-a~~L~-~~G~ 85 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQA-KEILS-EMGY 85 (104)
T ss_pred CCCeEEEEeCCC-hHHHHH-HHHHH-HcCC
Confidence 456899999988 455444 33343 3444
No 87
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=52.87 E-value=44 Score=23.99 Aligned_cols=18 Identities=11% Similarity=0.163 Sum_probs=13.2
Q ss_pred CCeEEEEcCCCCcHHHHH
Q 027835 120 KACVLVHCMFGKNRSAAI 137 (218)
Q Consensus 120 ~~~VLVHC~~G~sRS~~v 137 (218)
..+|++||..|-.||+..
T Consensus 66 ~~~iv~~C~~~g~rs~~a 83 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRA 83 (113)
T ss_pred CCEEEEECCCCCcccHHH
Confidence 468999999865676543
No 88
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=52.19 E-value=49 Score=28.97 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=17.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 119 ~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
.+..|+|+|..|-.||..++ +++...|+
T Consensus 73 ~~~~vvvyC~~gG~RS~~aa--~~L~~~G~ 100 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLA--WLLAQIGF 100 (311)
T ss_pred CCCcEEEEECCCChHHHHHH--HHHHHcCC
Confidence 33459999975546776543 44454555
No 89
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=51.91 E-value=27 Score=30.33 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=15.5
Q ss_pred eEEEEcCCCCcHHHHHH
Q 027835 122 CVLVHCMFGKNRSAAIV 138 (218)
Q Consensus 122 ~VLVHC~~G~sRS~~vv 138 (218)
.|-|=|++|..||++++
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 58899999999999887
No 90
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=51.88 E-value=84 Score=25.21 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=44.2
Q ss_pred CCHHHHHhCCCcEEE-ecCCCCccccCCCcEEEeccCCCcccHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHH
Q 027835 65 SRSGLLKTQGISRVL-NTVPSCQNLYKNSFTYHCLEDDKILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAA 136 (218)
Q Consensus 65 ~~~~~l~~~gI~~II-nl~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~ 136 (218)
-..+.|++.||+.|| |+.++. ++.+....-+++.+++.++...|-+|+|-...--.|-+.
T Consensus 18 i~~~~L~~~Gikgvi~DlDNTL------------v~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~ 78 (175)
T COG2179 18 ITPDILKAHGIKGVILDLDNTL------------VPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVAR 78 (175)
T ss_pred CCHHHHHHcCCcEEEEeccCce------------ecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHh
Confidence 356889999999988 444432 344445556788889999999999999999866666543
No 91
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=51.56 E-value=15 Score=26.24 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=35.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH---HhcCC-------CHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhC
Q 027835 121 ACVLVHCMFGKNRSAAIVIAYLM---KCKGW-------RLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFG 183 (218)
Q Consensus 121 ~~VLVHC~~G~sRS~~vv~ayLm---~~~~~-------sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~~l~~ 183 (218)
.+||+-|.+|++ |+.++ --+- ...|+ +..++-..+.. --.+...|.+...+.+.++....
T Consensus 4 ~~ILl~C~~G~s-SS~l~-~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~-~Dvill~pqi~~~~~~i~~~~~~ 73 (95)
T TIGR00853 4 TNILLLCAAGMS-TSLLV-NKMNKAAEEYGVPVKIAAGSYGAAGEKLDD-ADVVLLAPQVAYMLPDLKKETDK 73 (95)
T ss_pred cEEEEECCCchh-HHHHH-HHHHHHHHHCCCcEEEEEecHHHHHhhcCC-CCEEEECchHHHHHHHHHHHhhh
Confidence 689999999998 44433 2222 23455 34443333322 22455677777777777777643
No 92
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=51.02 E-value=88 Score=22.27 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=44.9
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCCC---------HHHHHHHHHHhCCCcc----CCHH
Q 027835 103 ILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR---------LAQSHQWVKERRPSVN----LTED 169 (218)
Q Consensus 103 ~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~s---------l~~A~~~vr~~RP~i~----pn~~ 169 (218)
...++.+.++|+.++++|.++++.-..+ +||..-.+..| ...|++ ...+..++++..+... -+++
T Consensus 13 ~~~ipga~e~l~~L~~~g~~~~~lTNns-~~s~~~~~~~L-~~~Gi~~~~~~i~ts~~~~~~~l~~~~~~~~v~vlG~~~ 90 (101)
T PF13344_consen 13 NEPIPGAVEALDALRERGKPVVFLTNNS-SRSREEYAKKL-KKLGIPVDEDEIITSGMAAAEYLKEHKGGKKVYVLGSDG 90 (101)
T ss_dssp TEE-TTHHHHHHHHHHTTSEEEEEES-S-SS-HHHHHHHH-HHTTTT--GGGEEEHHHHHHHHHHHHTTSSEEEEES-HH
T ss_pred CCcCcCHHHHHHHHHHcCCCEEEEeCCC-CCCHHHHHHHH-HhcCcCCCcCEEEChHHHHHHHHHhcCCCCEEEEEcCHH
Confidence 3567889999999999988888886554 67877777777 556774 4456667776543222 2555
Q ss_pred HHHHHH
Q 027835 170 VHQQLQ 175 (218)
Q Consensus 170 f~~~L~ 175 (218)
....|.
T Consensus 91 l~~~l~ 96 (101)
T PF13344_consen 91 LREELR 96 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 93
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=50.81 E-value=25 Score=27.05 Aligned_cols=27 Identities=22% Similarity=0.073 Sum_probs=22.7
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEEcCCC
Q 027835 104 LQFDDAIQFLEQCERDKACVLVHCMFG 130 (218)
Q Consensus 104 ~~~~~~~~fI~~~~~~~~~VLVHC~~G 130 (218)
....-++++++++.++|.+|+|+|..-
T Consensus 13 ~~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 13 ALEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 345668899999999999999999654
No 94
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=50.56 E-value=63 Score=22.85 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=31.5
Q ss_pred cEEEecCCCCccccCCCcEEEeccCCCcccHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 76 SRVLNTVPSCQNLYKNSFTYHCLEDDKILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 76 ~~IInl~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
..|||+....+ +.. -++|....-.+..+.+++.. +..+.+++|+|..|. ||.. ++ -.++..|.
T Consensus 21 ~~ivDvR~~~e-~~~-----ghi~gA~~ip~~~l~~~~~~-~~~~~~ivv~c~~g~-~s~~-a~-~~L~~~G~ 83 (108)
T PRK00162 21 AVLVDIRDPQS-FAM-----GHAPGAFHLTNDSLGAFMRQ-ADFDTPVMVMCYHGN-SSQG-AA-QYLLQQGF 83 (108)
T ss_pred CEEEEcCCHHH-Hhc-----CCCCCCeECCHHHHHHHHHh-cCCCCCEEEEeCCCC-CHHH-HH-HHHHHCCc
Confidence 46888876432 111 12232211122333344443 345688999999885 5533 22 23444554
No 95
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=50.41 E-value=25 Score=24.37 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=17.4
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 119 ~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
.+.+|+++|..|. ||.. ++.+| ...|.
T Consensus 55 ~~~~iv~~c~~G~-rs~~-aa~~L-~~~G~ 81 (95)
T cd01534 55 RGARIVLADDDGV-RADM-TASWL-AQMGW 81 (95)
T ss_pred CCCeEEEECCCCC-hHHH-HHHHH-HHcCC
Confidence 3578999999984 6643 33444 44555
No 96
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=50.15 E-value=43 Score=23.33 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=19.7
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHH---HHHHHHhcCCC
Q 027835 116 CERDKACVLVHCMFGKNRSAAIV---IAYLMKCKGWR 149 (218)
Q Consensus 116 ~~~~~~~VLVHC~~G~sRS~~vv---~ayLm~~~~~s 149 (218)
....+..|+++|..|.. +...+ ++|.+...|.+
T Consensus 63 ~~~~~~~iv~yc~~~~~-~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 63 KIDKDKDIVFYCSSGWR-SGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp GSTTTSEEEEEESSSCH-HHHHHHHHHHHHHHHTTTS
T ss_pred cccccccceeeeecccc-cchhHHHHHHHHHHHcCCC
Confidence 34567789999976654 43332 34546655653
No 97
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=49.60 E-value=22 Score=27.68 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCeEEEEcCC
Q 027835 108 DAIQFLEQCERDKACVLVHCMF 129 (218)
Q Consensus 108 ~~~~fI~~~~~~~~~VLVHC~~ 129 (218)
-++.+++++...|.+|||+|..
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCC
Confidence 7789999999999999999954
No 98
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=49.42 E-value=1.7e+02 Score=26.41 Aligned_cols=44 Identities=18% Similarity=0.391 Sum_probs=26.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHH
Q 027835 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQK 180 (218)
Q Consensus 119 ~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~~ 180 (218)
..++|+|-|+.|.. -+.|..++|+.-|....+. .+.-|..|..+
T Consensus 376 ~~~~I~ViCrrGNd-----------------SQ~Av~~Lre~~~~~~vrD-vigGl~~w~~~ 419 (427)
T KOG2017|consen 376 ESKDIFVICRRGND-----------------SQRAVRILREKFPDSSVRD-VIGGLKAWAAK 419 (427)
T ss_pred cCCCEEEEeCCCCc-----------------hHHHHHHHHhhCCchhhhh-hhhHHHHHHHh
Confidence 46789999999865 3556666665555444322 33444444444
No 99
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=48.93 E-value=21 Score=24.75 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=11.8
Q ss_pred CeEEEEcCCCCcHH
Q 027835 121 ACVLVHCMFGKNRS 134 (218)
Q Consensus 121 ~~VLVHC~~G~sRS 134 (218)
++|+|.|.+|+|=|
T Consensus 1 ~kilvvCg~G~gtS 14 (87)
T cd05567 1 KKIVFACDAGMGSS 14 (87)
T ss_pred CEEEEECCCCccHH
Confidence 47999999999954
No 100
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=48.92 E-value=11 Score=27.28 Aligned_cols=11 Identities=27% Similarity=0.836 Sum_probs=9.2
Q ss_pred CCeEEEEcCCC
Q 027835 120 KACVLVHCMFG 130 (218)
Q Consensus 120 ~~~VLVHC~~G 130 (218)
..+|||||.-|
T Consensus 85 ~~~~yIhCsIG 95 (97)
T PF10302_consen 85 APRIYIHCSIG 95 (97)
T ss_pred CCeEEEEEecc
Confidence 36899999877
No 101
>PRK13938 phosphoheptose isomerase; Provisional
Probab=48.85 E-value=45 Score=27.13 Aligned_cols=40 Identities=20% Similarity=0.046 Sum_probs=30.6
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHh
Q 027835 103 ILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKC 145 (218)
Q Consensus 103 ~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayLm~~ 145 (218)
.+.+.++.+.+.+.++++++|+|. |.|.|+.++..+-++.
T Consensus 28 ~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~L 67 (196)
T PRK13938 28 LEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAEL 67 (196)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHHc
Confidence 356777888888889999999987 8888887776555543
No 102
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=48.57 E-value=47 Score=25.05 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=24.0
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHH
Q 027835 103 ILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVI 139 (218)
Q Consensus 103 ~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ 139 (218)
.+.++++.+.+.+.+.+|++|++. |.|-|++++.
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~---G~G~S~~~a~ 51 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVC---GNGHSAAIAS 51 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEE---ESTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCchhhhHHH
Confidence 457888999999999998888876 5555655543
No 103
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=47.81 E-value=28 Score=30.43 Aligned_cols=77 Identities=17% Similarity=0.213 Sum_probs=42.2
Q ss_pred EeCCcEEEcChhhcCCHHH-HHhCCCcEEEecCCCCccccCCCcEEEeccCCCcccHHHHHHHHHHHHh--cCCeEEEEc
Q 027835 51 ILPDFLYLGSYDNASRSGL-LKTQGISRVLNTVPSCQNLYKNSFTYHCLEDDKILQFDDAIQFLEQCER--DKACVLVHC 127 (218)
Q Consensus 51 I~~~~lylG~~~~~~~~~~-l~~~gI~~IInl~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~fI~~~~~--~~~~VLVHC 127 (218)
|.| .-.+|-+-.+.+... +.+.+ +.||+..++.+... ++|. .--+.++..|.+..+++.+..+ ++++|...|
T Consensus 105 v~p-~~~vG~yl~p~~wn~~l~D~~-~vviDtRN~YE~~i-G~F~--gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyC 179 (308)
T COG1054 105 VDP-LENVGTYLSPKDWNELLSDPD-VVVIDTRNDYEVAI-GHFE--GAVEPDIETFREFPAWVEENLDLLKDKKVVMYC 179 (308)
T ss_pred cCc-cccccCccCHHHHHHHhcCCC-eEEEEcCcceeEee-eeec--CccCCChhhhhhhHHHHHHHHHhccCCcEEEEc
Confidence 444 334455444444433 34444 67888877654211 1111 1112234566666666665543 467999999
Q ss_pred CCCCc
Q 027835 128 MFGKN 132 (218)
Q Consensus 128 ~~G~s 132 (218)
++|+-
T Consensus 180 TGGIR 184 (308)
T COG1054 180 TGGIR 184 (308)
T ss_pred CCcee
Confidence 99983
No 104
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=47.62 E-value=24 Score=24.47 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=18.9
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 117 ERDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 117 ~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
+....+|+|+|..| .||.. +++++...|.
T Consensus 58 ~~~~~~ivv~c~~g-~~s~~--~~~~l~~~G~ 86 (103)
T cd01447 58 FAEDKPFVFYCASG-WRSAL--AGKTLQDMGL 86 (103)
T ss_pred CCCCCeEEEEcCCC-CcHHH--HHHHHHHcCh
Confidence 35678999999987 56643 3345555554
No 105
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=47.54 E-value=30 Score=24.19 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=18.7
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 118 ~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
.++.+|+|+|..|. ||.. +++++...|.
T Consensus 64 ~~~~~ivv~c~~g~-~s~~--~~~~l~~~G~ 91 (106)
T cd01519 64 SKDKELIFYCKAGV-RSKA--AAELARSLGY 91 (106)
T ss_pred CCCCeEEEECCCcH-HHHH--HHHHHHHcCC
Confidence 34679999999985 6533 3455565665
No 106
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=46.06 E-value=44 Score=23.87 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=18.6
Q ss_pred HhcCCeEEEEcCCCCc-HHHHHHHHHHHHhcCC
Q 027835 117 ERDKACVLVHCMFGKN-RSAAIVIAYLMKCKGW 148 (218)
Q Consensus 117 ~~~~~~VLVHC~~G~s-RS~~vv~ayLm~~~~~ 148 (218)
+..+.+|+|+|..|.. ||.. ++ ..++..|.
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~-~a-~~l~~~G~ 91 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATK-AA-LKLAELGF 91 (110)
T ss_pred CCCCCeEEEEECCCCCchHHH-HH-HHHHHcCC
Confidence 4567899999998863 4433 33 33444554
No 107
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=46.00 E-value=37 Score=30.49 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=11.8
Q ss_pred HHhcCCeEEEEcCCC
Q 027835 116 CERDKACVLVHCMFG 130 (218)
Q Consensus 116 ~~~~~~~VLVHC~~G 130 (218)
.+..|..||.||.+|
T Consensus 163 ~I~dg~~ILThcnsg 177 (363)
T PRK05772 163 KLNDGDTVLTQCNAG 177 (363)
T ss_pred hcCCCCEEEEecCCc
Confidence 334678899999887
No 108
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=45.64 E-value=21 Score=31.97 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=16.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 121 ACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 121 ~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
.+|+|||..| .||.. ++.+|.. .|.
T Consensus 333 ~~Ivv~C~sG-~RS~~-Aa~~L~~-~G~ 357 (370)
T PRK05600 333 DNVVVYCASG-IRSAD-FIEKYSH-LGH 357 (370)
T ss_pred CcEEEECCCC-hhHHH-HHHHHHH-cCC
Confidence 3899999999 57754 4455543 444
No 109
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=45.19 E-value=32 Score=29.77 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=15.6
Q ss_pred eEEEEcCCCCcHHHHHHH
Q 027835 122 CVLVHCMFGKNRSAAIVI 139 (218)
Q Consensus 122 ~VLVHC~~G~sRS~~vv~ 139 (218)
.|-|=|++|..||++++=
T Consensus 247 ~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 247 TIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred EEEEecCCCcccHHHHHH
Confidence 388999999999998863
No 110
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=44.88 E-value=35 Score=23.84 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=16.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 120 KACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 120 ~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
+.+|+|+|..|. ||..++ +.+...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~a--~~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFA--AFLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHHH--HHHHHcCC
Confidence 578999999986 664433 33444554
No 111
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=44.54 E-value=56 Score=26.89 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 109 AIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 109 ~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
+.+.++......++|+|- |+|||+-++=++-|+....
T Consensus 28 ~~~a~~~i~~~~gkv~V~---G~GkSG~Igkk~Aa~L~s~ 64 (202)
T COG0794 28 FVRAVELILECKGKVFVT---GVGKSGLIGKKFAARLAST 64 (202)
T ss_pred HHHHHHHHHhcCCcEEEE---cCChhHHHHHHHHHHHHcc
Confidence 333344444457889986 9999999987777775433
No 112
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=43.75 E-value=37 Score=29.27 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=15.1
Q ss_pred eEEEEcCCCCcHHHHHH
Q 027835 122 CVLVHCMFGKNRSAAIV 138 (218)
Q Consensus 122 ~VLVHC~~G~sRS~~vv 138 (218)
.|-|=|++|..||++++
T Consensus 245 TIaIGCTGGqHRSV~ia 261 (286)
T COG1660 245 TIAIGCTGGQHRSVYIA 261 (286)
T ss_pred EEEEccCCCccchHHHH
Confidence 37889999999999886
No 113
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=43.73 E-value=52 Score=26.47 Aligned_cols=33 Identities=18% Similarity=0.150 Sum_probs=26.3
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHH
Q 027835 103 ILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIV 138 (218)
Q Consensus 103 ~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv 138 (218)
.+.++++++.|.+++.++++|++. |.|.|+.++
T Consensus 27 ~~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~A 59 (192)
T PRK00414 27 IHAIQRAAVLIADSFKAGGKVLSC---GNGGSHCDA 59 (192)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 357899999999999999999887 666665543
No 114
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=43.19 E-value=34 Score=27.40 Aligned_cols=30 Identities=33% Similarity=0.275 Sum_probs=23.3
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHH
Q 027835 104 LQFDDAIQFLEQCERDKACVLVHCMFGKNRSAA 136 (218)
Q Consensus 104 ~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~ 136 (218)
..++++...|-+...+|++||++ |.|+|++
T Consensus 25 ~~I~~aa~~i~~~l~~G~Kvl~c---GNGgSaa 54 (176)
T COG0279 25 EAIERAAQLLVQSLLNGNKVLAC---GNGGSAA 54 (176)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEE---CCCcchh
Confidence 45677778888888999999987 6666755
No 115
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=42.40 E-value=48 Score=29.49 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=14.1
Q ss_pred HhcCCeEEEEcCCCCcHH
Q 027835 117 ERDKACVLVHCMFGKNRS 134 (218)
Q Consensus 117 ~~~~~~VLVHC~~G~sRS 134 (218)
+..|..||.||.+|..++
T Consensus 145 I~~g~~ILThc~sg~lat 162 (339)
T PRK06036 145 LEDGDTVLTHCNAGRLAC 162 (339)
T ss_pred ccCCCEEEEecCCccccc
Confidence 346788999999997654
No 116
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=41.81 E-value=53 Score=29.11 Aligned_cols=14 Identities=36% Similarity=0.582 Sum_probs=11.2
Q ss_pred HhcCC----eEEEEcCCC
Q 027835 117 ERDKA----CVLVHCMFG 130 (218)
Q Consensus 117 ~~~~~----~VLVHC~~G 130 (218)
+..|. .||.||.+|
T Consensus 140 I~dg~~~~~~ILThcnsg 157 (331)
T TIGR00512 140 IKKGVAAPLRVLTHCNTG 157 (331)
T ss_pred hcCCCCCCceEEeecCCc
Confidence 34667 899999987
No 117
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=41.66 E-value=1.5e+02 Score=25.36 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=55.6
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHH--HHHHHHhcCC-------CHHHHHHHHHHhC---CCccCCH-HH
Q 027835 104 LQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIV--IAYLMKCKGW-------RLAQSHQWVKERR---PSVNLTE-DV 170 (218)
Q Consensus 104 ~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv--~ayLm~~~~~-------sl~~A~~~vr~~R---P~i~pn~-~f 170 (218)
..+..++.++-+..+.+-.|+|. |.||-++.+ .+.++...|+ ....+++..+..+ +...+.. ..
T Consensus 75 ~~I~~ay~~l~~~~~~gd~I~lf---GFSRGA~~AR~~a~~i~~~Gll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (277)
T PF09994_consen 75 ARIRDAYRFLSKNYEPGDRIYLF---GFSRGAYTARAFANMIDKIGLLKPDNEERVPQAYKAYQRYRQRKPPDKPDYKKK 151 (277)
T ss_pred HHHHHHHHHHHhccCCcceEEEE---ecCccHHHHHHHHHHHhhcCCcCcchhHHHHHHHHHHHhhhhccCCCccchhhh
Confidence 46777888887777777788754 999998876 5566666666 3456666655532 2222221 34
Q ss_pred HHHHHHHHHHHh-CCCCCCCCCCCCCCCCCCC
Q 027835 171 HQQLQEYEQKIF-GSVDGSNPTPLPALSAGMP 201 (218)
Q Consensus 171 ~~~L~~~e~~l~-~~~~~~~~~~~~~~~~~~~ 201 (218)
..++..|...+. ....+.+.+.=.+.++...
T Consensus 152 ~~~~~~~~~~~~~~~~~v~I~fvGlfDTV~s~ 183 (277)
T PF09994_consen 152 FNYMKSFKKNFSDPPREVPIRFVGLFDTVGSL 183 (277)
T ss_pred HHHHHHHHHhhcccCCccceEEEEeeeeeccc
Confidence 455555555544 3344444444455555443
No 118
>PF02132 RecR: RecR protein; InterPro: IPR023628 The bacterial protein RecR seems to play a role in a recombinational process of DNA repair []. It may act with RecF and RecO. RecR's structure consists of a N-terminal helix-hairpin-helix (HhH) motif, followed by a Cys4 zinc-finger motif, a Toprim domain and a Walker B motif []. This entry represents the C4-type zinc finger.; PDB: 1VDD_D 2V1C_B.
Probab=41.33 E-value=7.4 Score=23.32 Aligned_cols=24 Identities=33% Similarity=0.854 Sum_probs=13.4
Q ss_pred cccCCCccccCccccccCccccccCCC
Q 027835 5 ERENPCSVCGHYHKYEEGEVCGICGHR 31 (218)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (218)
+.--.|..||++.. +++|.||..+
T Consensus 15 ~~i~~C~~C~nlse---~~~C~IC~d~ 38 (41)
T PF02132_consen 15 ENIKFCSICGNLSE---EDPCEICSDP 38 (41)
T ss_dssp HH-EE-SSS--EES---SSS-HHHH-T
T ss_pred HcCCccCCCCCcCC---CCcCcCCCCC
Confidence 34457999998876 7899998765
No 119
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=40.29 E-value=27 Score=25.42 Aligned_cols=59 Identities=10% Similarity=0.157 Sum_probs=30.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHH---HhcCC-------CHHHHHHHHHHhCC-CccCCHHHHHHHHHHHHHH
Q 027835 121 ACVLVHCMFGKNRSAAIVIAYLM---KCKGW-------RLAQSHQWVKERRP-SVNLTEDVHQQLQEYEQKI 181 (218)
Q Consensus 121 ~~VLVHC~~G~sRS~~vv~ayLm---~~~~~-------sl~~A~~~vr~~RP-~i~pn~~f~~~L~~~e~~l 181 (218)
++||+-|.+|++ .++++--+- ...|+ +..+.-..+..... .+...|+....+.+..+..
T Consensus 2 kkILlvCg~G~S--TSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~ 71 (104)
T PRK09590 2 KKALIICAAGMS--SSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAG 71 (104)
T ss_pred cEEEEECCCchH--HHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHh
Confidence 379999999994 344443332 23344 23332222222122 3445666666666666655
No 120
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=39.97 E-value=1.5e+02 Score=24.33 Aligned_cols=72 Identities=14% Similarity=0.072 Sum_probs=49.5
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCC---------CHHHHHHHHHHhCCC----ccCCHHHH
Q 027835 105 QFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGW---------RLAQSHQWVKERRPS----VNLTEDVH 171 (218)
Q Consensus 105 ~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~---------sl~~A~~~vr~~RP~----i~pn~~f~ 171 (218)
.+..+.++|..+.++|.++.+....+ +|+...++.+|....|. +..-+..++++..|. +.-+++..
T Consensus 15 ~~~~a~e~i~~l~~~g~~~~~~tN~~-~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~~~~~~v~v~G~~~~~ 93 (236)
T TIGR01460 15 PIPGAAEALNRLRAKGKPVVFLTNNS-SRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQRFEGEKVYVIGVGELR 93 (236)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEECCC-CCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHhCCCCEEEEECCHHHH
Confidence 46688899999998888888886554 78888888888886554 345566777765442 22355666
Q ss_pred HHHHHH
Q 027835 172 QQLQEY 177 (218)
Q Consensus 172 ~~L~~~ 177 (218)
..|+.+
T Consensus 94 ~~l~~~ 99 (236)
T TIGR01460 94 ESLEGL 99 (236)
T ss_pred HHHHHc
Confidence 666543
No 121
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=39.86 E-value=71 Score=28.12 Aligned_cols=80 Identities=11% Similarity=-0.035 Sum_probs=49.8
Q ss_pred hcCCeEEEEcCCCCc-HHHHHHHHHHHHhcCC----CHHHHHHHHHHhCCCccCCHHHHHHHHHH---HHHHhCCCCCCC
Q 027835 118 RDKACVLVHCMFGKN-RSAAIVIAYLMKCKGW----RLAQSHQWVKERRPSVNLTEDVHQQLQEY---EQKIFGSVDGSN 189 (218)
Q Consensus 118 ~~~~~VLVHC~~G~s-RS~~vv~ayLm~~~~~----sl~~A~~~vr~~RP~i~pn~~f~~~L~~~---e~~l~~~~~~~~ 189 (218)
..|-+|+.|...|++ ++++ +=++...|+ +++++.+.+.+......+-+.|...+... .+.|.-+ ++..
T Consensus 97 ~~G~~V~kHG~r~~~s~~Gs---~d~le~LGi~~~~s~~~~~~~l~~~g~~f~~~~~~~P~~~~l~~lR~~lg~r-T~~N 172 (330)
T TIGR01245 97 AAGVKVAKHGNRSVSSKSGS---ADVLEALGVNLDLGPEKVARSLEETGIGFLFAPLYHPAMKHVAPVRRELGVR-TVFN 172 (330)
T ss_pred hCCCEEEEeCCCCCCCCccH---HHHHHHcCCCCCCCHHHHHHHHHHhCcEEeechhhCHHHHHHHHHHHHhCCC-CHHH
Confidence 568899999998887 7765 234454554 78899999998876555556655555544 4444322 2333
Q ss_pred CCCCCCCCCCCC
Q 027835 190 PTPLPALSAGMP 201 (218)
Q Consensus 190 ~~~~~~~~~~~~ 201 (218)
.-.++++|...+
T Consensus 173 ~lgpL~NP~~~~ 184 (330)
T TIGR01245 173 LLGPLTNPARPK 184 (330)
T ss_pred HHHHhcCCCCCC
Confidence 333566665443
No 122
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=39.10 E-value=31 Score=29.69 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=19.5
Q ss_pred CCCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 027835 129 FGKNRSAAIVIAYLMKCKGWRLAQSHQW 156 (218)
Q Consensus 129 ~G~sRS~~vv~ayLm~~~~~sl~~A~~~ 156 (218)
=|.|||++.+.+-|.. |.+-+.|.++
T Consensus 165 PG~SRSGaTI~~~lll--G~~r~~Aaef 190 (270)
T COG1968 165 PGTSRSGATISGGLLL--GLSREAAAEF 190 (270)
T ss_pred CCCCccHHHHHHHHHc--CCCHHHHHHH
Confidence 4999999888776654 7777777664
No 123
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=38.39 E-value=22 Score=20.07 Aligned_cols=23 Identities=39% Similarity=0.775 Sum_probs=15.7
Q ss_pred CCccccCcccc-ccCccccccCCC
Q 027835 9 PCSVCGHYHKY-EEGEVCGICGHR 31 (218)
Q Consensus 9 ~~~~~~~~~~~-~~~~~~~~~~~~ 31 (218)
.|.+||+...= +....|-+|++.
T Consensus 3 ~C~~CGy~y~~~~~~~~CP~Cg~~ 26 (33)
T cd00350 3 VCPVCGYIYDGEEAPWVCPVCGAP 26 (33)
T ss_pred ECCCCCCEECCCcCCCcCcCCCCc
Confidence 58999987442 256677778764
No 124
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=37.30 E-value=36 Score=27.83 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Q 027835 138 VIAYLMKCKGWRLAQSHQWVKER 160 (218)
Q Consensus 138 v~ayLm~~~~~sl~~A~~~vr~~ 160 (218)
+=+.||..+|++-++|++++|..
T Consensus 150 AKglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 150 AKGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Confidence 44678999999999999999876
No 125
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=36.97 E-value=31 Score=23.61 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=12.1
Q ss_pred eEEEEcCCCCcHHHH
Q 027835 122 CVLVHCMFGKNRSAA 136 (218)
Q Consensus 122 ~VLVHC~~G~sRS~~ 136 (218)
+||+-|.+|++=|..
T Consensus 1 kIlvvC~~Gi~TS~~ 15 (90)
T PF02302_consen 1 KILVVCGSGIGTSLM 15 (90)
T ss_dssp EEEEEESSSSHHHHH
T ss_pred CEEEECCChHHHHHH
Confidence 689999999985533
No 126
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=36.74 E-value=47 Score=28.08 Aligned_cols=55 Identities=16% Similarity=0.006 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHH------HHhcCCCHHHHHHHHHH
Q 027835 105 QFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYL------MKCKGWRLAQSHQWVKE 159 (218)
Q Consensus 105 ~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayL------m~~~~~sl~~A~~~vr~ 159 (218)
+.+-..++|+-+.+.+.+|.|||.........++-.|- +.-+.=++++|-++++.
T Consensus 112 Q~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~fsG~~~~a~~~l~~ 172 (258)
T PRK11449 112 QQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQL 172 (258)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecCccHHHHHHHHhcCCCCCeEEEcCCCCHHHHHHHHHC
Confidence 33444556777777789999999876665555554431 11123378888888875
No 127
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=36.07 E-value=2.9e+02 Score=26.64 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEc-CCCCcHHHH-HHHHHHHHhcCCCHHHHHHHHHHhC
Q 027835 106 FDDAIQFLEQCERDKACVLVHC-MFGKNRSAA-IVIAYLMKCKGWRLAQSHQWVKERR 161 (218)
Q Consensus 106 ~~~~~~fI~~~~~~~~~VLVHC-~~G~sRS~~-vv~ayLm~~~~~sl~~A~~~vr~~R 161 (218)
+.+-.+-|-+++.+|+.+||+= ..|+.+-+. .....+....+++.++|-++++..+
T Consensus 520 lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk 577 (587)
T COG0369 520 LREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELK 577 (587)
T ss_pred HHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 4454566777888889999987 677777655 3455666777888888888887765
No 128
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=35.78 E-value=27 Score=18.60 Aligned_cols=24 Identities=25% Similarity=0.632 Sum_probs=15.5
Q ss_pred CCCccccCccccccCccccccCCCC
Q 027835 8 NPCSVCGHYHKYEEGEVCGICGHRS 32 (218)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (218)
-.|..||. ..-.+-..|..||+.+
T Consensus 3 ~~Cp~Cg~-~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 3 MFCPNCGA-EIDPDAKFCPNCGAKL 26 (26)
T ss_pred CCCcccCC-cCCcccccChhhCCCC
Confidence 46888888 3334566666677653
No 129
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=35.17 E-value=1.7e+02 Score=25.28 Aligned_cols=98 Identities=7% Similarity=0.064 Sum_probs=57.0
Q ss_pred ceEeCCcEEEcChhh--cCCHHHHHhCCCcEEEecCCCCccccCCCcEEEeccCCCcc----cHHHHHHHHHHHHhcCCe
Q 027835 49 SEILPDFLYLGSYDN--ASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCLEDDKIL----QFDDAIQFLEQCERDKAC 122 (218)
Q Consensus 49 ~~I~~~~lylG~~~~--~~~~~~l~~~gI~~IInl~~~~~~~~~~~~~~~~ip~~~~~----~~~~~~~fI~~~~~~~~~ 122 (218)
..|+|+++.+-+... ..-...+++.|=|+++-+.-..- ...+.-..-. .++..++..+..+.. ..
T Consensus 5 ~~v~DnH~H~np~~gg~~ea~~~F~rAGGt~~il~nlps~--------~~g~~~~~~edy~r~yd~~lr~ve~~r~e-~~ 75 (285)
T COG1831 5 IPVTDNHFHLNPKNGGALEAARRFHRAGGTHLILVNLPSW--------SYGIAPTGGEDYRRLYDIHLRLVEKIREE-GP 75 (285)
T ss_pred cceecceeeecCCcCcHHHHHHHHHHcCCcEEEEeecccc--------cccCCCCcHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 346676777755443 33446788888888874432211 0011111112 344555555555554 55
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 027835 123 VLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKE 159 (218)
Q Consensus 123 VLVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~ 159 (218)
+=++|..|+.-+ =+.+|+... +++++|.+.++.
T Consensus 76 ~~~~~vvGvHPa---E~~~l~e~~-~~peea~e~m~~ 108 (285)
T COG1831 76 VEAYAVVGVHPA---EVSRLAEAG-RSPEEALEEMRH 108 (285)
T ss_pred ceeEEEeccCHH---HHHHHHHhc-cChHHHHHHHHH
Confidence 667999998733 456778865 988888887764
No 130
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=34.75 E-value=87 Score=27.91 Aligned_cols=16 Identities=31% Similarity=0.406 Sum_probs=12.6
Q ss_pred HhcCCeEEEEcCCCCc
Q 027835 117 ERDKACVLVHCMFGKN 132 (218)
Q Consensus 117 ~~~~~~VLVHC~~G~s 132 (218)
+..|..||.||.+|.-
T Consensus 144 I~~g~~ILThc~sg~l 159 (344)
T PRK05720 144 IRKGQGILTHCNAGWL 159 (344)
T ss_pred ccCCCEEEEecCCCcc
Confidence 4467889999999853
No 131
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=34.30 E-value=49 Score=24.36 Aligned_cols=26 Identities=15% Similarity=0.399 Sum_probs=17.0
Q ss_pred HhcCCeEEEEcC-CCCcHHHHHHHHHHHH
Q 027835 117 ERDKACVLVHCM-FGKNRSAAIVIAYLMK 144 (218)
Q Consensus 117 ~~~~~~VLVHC~-~G~sRS~~vv~ayLm~ 144 (218)
+.+..+|+|||. +| .||+. ++.+|..
T Consensus 65 ~~~~~~vv~yC~~sg-~rs~~-aa~~L~~ 91 (121)
T cd01530 65 KKKRRVLIFHCEFSS-KRGPR-MARHLRN 91 (121)
T ss_pred cCCCCEEEEECCCcc-ccHHH-HHHHHHH
Confidence 346789999997 55 66644 4445544
No 132
>KOG1004 consensus Exosomal 3'-5' exoribonuclease complex subunit Rrp40 [Translation, ribosomal structure and biogenesis]
Probab=33.97 E-value=95 Score=25.83 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=32.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 027835 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKER 160 (218)
Q Consensus 119 ~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~ 160 (218)
-+|+|.|||.. .+...+++-+||....|+-++++.+++..
T Consensus 184 lNGriWV~ae~--~~~t~~i~~~l~~~e~~td~~q~~~~k~~ 223 (230)
T KOG1004|consen 184 LNGRIWVKAET--LSDTLIIANILMNCEFMTDTQQRIMVKQL 223 (230)
T ss_pred cCceEEEeccC--cchHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 47999999976 45667788899999999999988777654
No 133
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=32.77 E-value=1.1e+02 Score=23.79 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=25.8
Q ss_pred CcccHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHH
Q 027835 102 KILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIV 138 (218)
Q Consensus 102 ~~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv 138 (218)
+...++++++.|.+.+.++++|++. |.|.|..++
T Consensus 15 ~~~~i~~a~~~i~~~i~~~~~I~i~---G~G~S~~~A 48 (177)
T cd05006 15 LAEAIEQAAQLLAEALLNGGKILIC---GNGGSAADA 48 (177)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 3467889999999988888898887 566565544
No 134
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=32.67 E-value=91 Score=20.45 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=16.3
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHH
Q 027835 116 CERDKACVLVHCMFGKNRSAAIVIAYLM 143 (218)
Q Consensus 116 ~~~~~~~VLVHC~~G~sRS~~vv~ayLm 143 (218)
...++.+|+|+|..| .|+ ..++.+|.
T Consensus 46 ~~~~~~~vv~~c~~~-~~a-~~~~~~l~ 71 (89)
T cd00158 46 ELDKDKPIVVYCRSG-NRS-ARAAKLLR 71 (89)
T ss_pred ccCCCCeEEEEeCCC-chH-HHHHHHHH
Confidence 345678999999996 344 33344443
No 135
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=32.52 E-value=70 Score=30.81 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=23.3
Q ss_pred HHHHHHHHH-HhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 027835 108 DAIQFLEQC-ERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (218)
Q Consensus 108 ~~~~fI~~~-~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~s 149 (218)
++-+++.+. +..+.+|.++|..|. ||+.+ +++++..|.+
T Consensus 210 el~~~~~~~Gi~~~~~VVvYC~sG~-rAa~~--~~~L~~lG~~ 249 (610)
T PRK09629 210 DMPEILRDLGITPDKEVITHCQTHH-RSGFT--YLVAKALGYP 249 (610)
T ss_pred HHHHHHHHcCCCCCCCEEEECCCCh-HHHHH--HHHHHHcCCC
Confidence 333444332 356789999999985 55433 3445666663
No 136
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.42 E-value=26 Score=28.62 Aligned_cols=27 Identities=41% Similarity=0.888 Sum_probs=21.2
Q ss_pred ccccCCCccccCccccccCccccccCCCCC
Q 027835 4 RERENPCSVCGHYHKYEEGEVCGICGHRSA 33 (218)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (218)
++..-.|..||++.+ .++|.||..+-.
T Consensus 50 ~~~i~~C~~C~~lse---~~~C~IC~d~~R 76 (195)
T TIGR00615 50 KENLRTCSVCGAISD---QEVCNICSDERR 76 (195)
T ss_pred HHcCCcCCCCCCCCC---CCcCCCCCCCCC
Confidence 355678999998774 789999988744
No 137
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=32.01 E-value=72 Score=22.73 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEcC
Q 027835 105 QFDDAIQFLEQCERDKACVLVHCM 128 (218)
Q Consensus 105 ~~~~~~~fI~~~~~~~~~VLVHC~ 128 (218)
-+.++.++++.+...|-++.+||.
T Consensus 31 Git~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 31 GITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp SHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CHHHHHHHHHHHHHhCCCEEecCC
Confidence 477888999999999999999996
No 138
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=31.61 E-value=49 Score=23.95 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=27.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHHhcCCC-HHHHHHHHH
Q 027835 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGWR-LAQSHQWVK 158 (218)
Q Consensus 119 ~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~s-l~~A~~~vr 158 (218)
..++|+=||-.| +-++-||+.+...+ -+||+.+-.
T Consensus 23 ~~~tv~~hcftG-----sdVVdWLv~~~~v~~r~EAl~las 58 (99)
T cd04445 23 KDKKVFNHCFTG-----SCVIDWLVSNQSVRNRQEGLMLAS 58 (99)
T ss_pred Hhhccccceecc-----cHHHHHHHHhhcccchHHHHHHHH
Confidence 347899999887 56889999988884 888876643
No 139
>PRK00076 recR recombination protein RecR; Reviewed
Probab=31.39 E-value=28 Score=28.51 Aligned_cols=27 Identities=33% Similarity=0.845 Sum_probs=21.0
Q ss_pred ccccCCCccccCccccccCccccccCCCCC
Q 027835 4 RERENPCSVCGHYHKYEEGEVCGICGHRSA 33 (218)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (218)
++.--+|..||++.. .++|.||...-.
T Consensus 50 ~~~i~~C~~C~~lse---~~~C~IC~d~~R 76 (196)
T PRK00076 50 KEKIKHCSVCGNLTE---QDPCEICSDPRR 76 (196)
T ss_pred HHcCCcCCCCCCcCC---CCcCCCCCCCCC
Confidence 345678999999885 689999987643
No 140
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=31.11 E-value=1.3e+02 Score=25.92 Aligned_cols=36 Identities=8% Similarity=0.108 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHH
Q 027835 107 DDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYL 142 (218)
Q Consensus 107 ~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayL 142 (218)
.+..+.|.+...+|+.++|.-..|.|.|.+++++.|
T Consensus 14 ~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 14 YEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 344556666777889999999999999987776654
No 141
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=31.11 E-value=1.3e+02 Score=25.92 Aligned_cols=36 Identities=8% Similarity=0.108 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHH
Q 027835 107 DDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYL 142 (218)
Q Consensus 107 ~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayL 142 (218)
.+..+.|.+...+|+.++|.-..|.|.|.+++++.|
T Consensus 14 ~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 14 YEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 344556666777889999999999999987776654
No 142
>PRK07411 hypothetical protein; Validated
Probab=30.29 E-value=66 Score=29.01 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=18.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 027835 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (218)
Q Consensus 119 ~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~s 149 (218)
++.+|+|||..|. ||.. + +..++..|++
T Consensus 341 ~d~~IVvyC~~G~-RS~~-a-a~~L~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAK-A-LGILKEAGIE 368 (390)
T ss_pred CCCeEEEECCCCH-HHHH-H-HHHHHHcCCC
Confidence 4689999999885 7744 3 3444556653
No 143
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=30.26 E-value=1.7e+02 Score=21.96 Aligned_cols=34 Identities=9% Similarity=0.267 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhCC
Q 027835 150 LAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGS 184 (218)
Q Consensus 150 l~~A~~~vr~~RP~i~pn~~f~~~L~~~e~~l~~~ 184 (218)
.-..++++.++.| +.+...|...|.+|.-.+...
T Consensus 71 al~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v~s~~ 104 (126)
T PF12921_consen 71 ALKLVDFFSRKYP-IPIPKEFWRRLLEWAYVLSSK 104 (126)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhcCC
Confidence 3444567778888 888899999999998776443
No 144
>COG2126 RPL37A Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]
Probab=30.21 E-value=27 Score=22.84 Aligned_cols=31 Identities=23% Similarity=0.559 Sum_probs=25.3
Q ss_pred CccccccCCCccccCccccccCccccccCCC
Q 027835 1 MRKRERENPCSVCGHYHKYEEGEVCGICGHR 31 (218)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (218)
+|++...-.|.-||.-.+--....|+-||-.
T Consensus 10 Krnk~tH~~CRRCGr~syhv~k~~CaaCGfg 40 (61)
T COG2126 10 KRNKKTHIRCRRCGRRSYHVRKKYCAACGFG 40 (61)
T ss_pred ccCCcceehhhhccchheeeccceecccCCC
Confidence 3667667789999998887788999999865
No 145
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=29.34 E-value=4e+02 Score=26.01 Aligned_cols=56 Identities=9% Similarity=0.071 Sum_probs=38.8
Q ss_pred HHHHHHHHHHH-hcCCeEEEEcCCC-CcHHHHHH-HHHHHHhcCCCHHHHHHHHHHhCC
Q 027835 107 DDAIQFLEQCE-RDKACVLVHCMFG-KNRSAAIV-IAYLMKCKGWRLAQSHQWVKERRP 162 (218)
Q Consensus 107 ~~~~~fI~~~~-~~~~~VLVHC~~G-~sRS~~vv-~ayLm~~~~~sl~~A~~~vr~~RP 162 (218)
.+-.+-|-+.+ .+++.+||+=.++ +.|...=+ .-.+....+++-++|.++++.-|-
T Consensus 578 ~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~ 636 (645)
T KOG1158|consen 578 REYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKK 636 (645)
T ss_pred HHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhh
Confidence 33344444455 3489999988777 88876644 445556668999999999988763
No 146
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=28.18 E-value=1e+02 Score=23.71 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=10.9
Q ss_pred CeEEEEcCCCCcHH
Q 027835 121 ACVLVHCMFGKNRS 134 (218)
Q Consensus 121 ~~VLVHC~~G~sRS 134 (218)
..|+++|+.|. ||
T Consensus 90 ~eiIf~C~SG~-Rs 102 (136)
T KOG1530|consen 90 KEIIFGCASGV-RS 102 (136)
T ss_pred CcEEEEeccCc-ch
Confidence 48999999994 66
No 147
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=27.89 E-value=34 Score=28.02 Aligned_cols=25 Identities=40% Similarity=0.933 Sum_probs=19.1
Q ss_pred cccCCCccccCccccccCccccccCCCC
Q 027835 5 ERENPCSVCGHYHKYEEGEVCGICGHRS 32 (218)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (218)
+.-..|..||++.. .++|.||...-
T Consensus 52 ~~i~~C~~C~~~te---~d~C~ICsd~~ 76 (198)
T COG0353 52 ENIKHCSVCGNLTE---SDPCDICSDES 76 (198)
T ss_pred hcCccccccCCcCC---CCcCcCcCCcc
Confidence 44568999998775 77999998653
No 148
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=27.80 E-value=1.1e+02 Score=20.22 Aligned_cols=30 Identities=33% Similarity=0.507 Sum_probs=18.0
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 027835 117 ERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (218)
Q Consensus 117 ~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~s 149 (218)
...+.+|+|+|..| .|+ ..+++.+...|.+
T Consensus 53 ~~~~~~iv~~c~~g-~~a--~~~~~~l~~~G~~ 82 (100)
T smart00450 53 LDKDKPVVVYCRSG-NRS--AKAAWLLRELGFK 82 (100)
T ss_pred CCCCCeEEEEeCCC-cHH--HHHHHHHHHcCCC
Confidence 34568999999665 355 3334445555553
No 149
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=27.62 E-value=82 Score=22.19 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCcHHHHH
Q 027835 110 IQFLEQCERDKACVLVHCMFGKNRSAAI 137 (218)
Q Consensus 110 ~~fI~~~~~~~~~VLVHC~~G~sRS~~v 137 (218)
++++..+...+++|+|+++.|..=.|++
T Consensus 4 l~~L~~~~~~~~~V~V~lr~~r~~~G~L 31 (87)
T cd01720 4 LSLLTQAVKNNTQVLINCRNNKKLLGRV 31 (87)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCEEEEEE
Confidence 4677888878899999999997755443
No 150
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=27.32 E-value=1.3e+02 Score=22.23 Aligned_cols=73 Identities=12% Similarity=0.044 Sum_probs=45.8
Q ss_pred cCCCCceEeCCcEEEcChhhcCCHHHHHhCCCcEEEecCCCCccccCCCcEEEeccCCC---cccHHHHHHHHHHHHhcC
Q 027835 44 VSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCLEDDK---ILQFDDAIQFLEQCERDK 120 (218)
Q Consensus 44 ~~~~p~~I~~~~lylG~~~~~~~~~~l~~~gI~~IInl~~~~~~~~~~~~~~~~ip~~~---~~~~~~~~~fI~~~~~~~ 120 (218)
|..-.++|.+ -+.+.|.+.+|+.|+- +.....-..-.++|-.++.+. .+.++++++........+
T Consensus 34 DG~DvSWiWD-----------vdFE~L~~~~i~~viv-~G~Ra~DmalRLkyAGv~~~~i~v~~d~~~a~~~~~~~~~~~ 101 (113)
T PF08353_consen 34 DGRDVSWIWD-----------VDFEKLADPNIKQVIV-SGTRAEDMALRLKYAGVDEEKIIVEEDLEEALDAFLIKSDPT 101 (113)
T ss_pred CCccceEEee-----------cCHHHHhcCCCCEEEE-EeeeHHHHHhHeeecCcchHHeEecCCHHHHHHHHHHhcCCC
Confidence 3444566666 5667888888999884 333222233456777777443 467788877644445556
Q ss_pred CeEEEEcC
Q 027835 121 ACVLVHCM 128 (218)
Q Consensus 121 ~~VLVHC~ 128 (218)
++++|-+.
T Consensus 102 ~~~yil~t 109 (113)
T PF08353_consen 102 DKVYILAT 109 (113)
T ss_pred CcEEEEEC
Confidence 77888654
No 151
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=27.26 E-value=2.5e+02 Score=22.64 Aligned_cols=53 Identities=8% Similarity=-0.073 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCC-----CcHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 027835 106 FDDAIQFLEQCERDKACVLVHCMFG-----KNRSAAIVIAYLMKCKGWRLAQSHQWVK 158 (218)
Q Consensus 106 ~~~~~~fI~~~~~~~~~VLVHC~~G-----~sRS~~vv~ayLm~~~~~sl~~A~~~vr 158 (218)
.......+.++++.|.+|++-..++ .+......+..++...|+++++|++.+.
T Consensus 222 ~~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~~~~gl~~~~al~~~T 279 (304)
T PF13147_consen 222 LREDRAALRELLEAGVPVALGSDHAPSSTEGSGDLLHEAMRLAVRAGLSPEEALRAAT 279 (304)
T ss_dssp THHHHHHHHHHHHTTSSEEEEE-BBTTTTTCTTTHHHHHHHHHHHTSSTHHHHHHHHT
T ss_pred chhhhHHHHHHHhCCCeEEEEcCCcccccccccccchhhhhHHhhcCCCHHHHHHHHH
Confidence 4555667788888999999988876 4455566666677779999999998764
No 152
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.05 E-value=88 Score=22.68 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCc
Q 027835 106 FDDAIQFLEQCERDKACVLVHCMFGKN 132 (218)
Q Consensus 106 ~~~~~~fI~~~~~~~~~VLVHC~~G~s 132 (218)
-+.++++|....+..++|+.|-.+|..
T Consensus 10 T~aAl~Li~~l~~~hgpvmFHQSGGCC 36 (116)
T COG3564 10 TPAALDLIAELQAEHGPVMFHQSGGCC 36 (116)
T ss_pred CHHHHHHHHHHHHhcCCEEEeccCCcc
Confidence 357889999999999999999766643
No 153
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=26.84 E-value=2e+02 Score=24.04 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=35.1
Q ss_pred HHHHhCCCcEEEecCCCCccccCCCcEEEeccCCCcccHHHHHHHHHHHHhcCCeEEEEcCCC
Q 027835 68 GLLKTQGISRVLNTVPSCQNLYKNSFTYHCLEDDKILQFDDAIQFLEQCERDKACVLVHCMFG 130 (218)
Q Consensus 68 ~~l~~~gI~~IInl~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~fI~~~~~~~~~VLVHC~~G 130 (218)
+.|.++||.-.|.+.+......... +.....-.+.++.++.+..+|+.|.+|=-.-
T Consensus 23 d~l~~~~ipf~v~vIP~~~d~~~~~-------~~~l~~~~~f~~~L~~~~~~Gg~I~lHGYtH 78 (243)
T PF10096_consen 23 DYLYKYGIPFSVAVIPVYVDPNGGI-------TVNLSDNPEFVEYLRYLQARGGEIVLHGYTH 78 (243)
T ss_pred HHHHHCCCCEEEEEEecccCCCCcc-------cccchhhHHHHHHHHHHHhcCCEEEEEecce
Confidence 5567788888887765432111110 2223345567777888889999999995533
No 154
>PRK13844 recombination protein RecR; Provisional
Probab=26.82 E-value=37 Score=27.87 Aligned_cols=26 Identities=23% Similarity=0.681 Sum_probs=20.5
Q ss_pred cccCCCccccCccccccCccccccCCCCC
Q 027835 5 ERENPCSVCGHYHKYEEGEVCGICGHRSA 33 (218)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (218)
+.--+|..||.+.+ .+.|.||...-.
T Consensus 55 ~~i~~C~~C~~lte---~~~C~IC~d~~R 80 (200)
T PRK13844 55 ANIKKCVYCQALTE---DDVCNICSNTNR 80 (200)
T ss_pred HhCCcCCCCCCCCC---CCCCCCCCCCCC
Confidence 45578999999885 688999987644
No 155
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=26.64 E-value=1.5e+02 Score=26.41 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=18.5
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 118 ~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
.++.+|+|+|..|. ||.. + +.+++..|.
T Consensus 55 ~~~~~IvvyC~~G~-rs~~-a-a~~L~~~G~ 82 (376)
T PRK08762 55 DRDREIVLICASGT-RSAH-A-AATLRELGY 82 (376)
T ss_pred CCCCeEEEEcCCCc-HHHH-H-HHHHHHcCC
Confidence 46789999999884 6643 3 334455555
No 156
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.49 E-value=2.1e+02 Score=25.97 Aligned_cols=47 Identities=11% Similarity=0.019 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHH---HHHHHHHHHHhcCCCHHHHHHHHH
Q 027835 111 QFLEQCERDKACVLVHCMFGKNRS---AAIVIAYLMKCKGWRLAQSHQWVK 158 (218)
Q Consensus 111 ~fI~~~~~~~~~VLVHC~~G~sRS---~~vv~ayLm~~~~~sl~~A~~~vr 158 (218)
+-++.+++.|-+|.+....|.+.+ -.+.+.++++ .+|+++||++-+.
T Consensus 297 ~~~~~l~~~GV~vai~TD~~~~~~~~~l~~~m~l~~~-~gmtp~EaL~a~T 346 (406)
T COG1228 297 KPARKLIDAGVKVAIGTDHNPGTSHGSLALEMALAVR-LGMTPEEALKAAT 346 (406)
T ss_pred hhHHHHHHCCCEEEEEcCCCCCchhhHHHHHHHHHHH-cCCCHHHHHHHHH
Confidence 336777888999999999999984 2344444444 5699999999754
No 157
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=26.21 E-value=61 Score=22.91 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=12.7
Q ss_pred CeEEEEcCCCCcHHHH
Q 027835 121 ACVLVHCMFGKNRSAA 136 (218)
Q Consensus 121 ~~VLVHC~~G~sRS~~ 136 (218)
.+|||-|.+|++=|..
T Consensus 3 ~kILvvCgsG~~TS~m 18 (94)
T PRK10310 3 RKIIVACGGAVATSTM 18 (94)
T ss_pred CeEEEECCCchhHHHH
Confidence 3799999999985543
No 158
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=26.16 E-value=1.5e+02 Score=21.50 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=32.9
Q ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHhcCCCHH-HH--HHHHHHhC---CCccCCHHHHHHHHHHHHHH
Q 027835 121 ACVLVHCMFGKNRSAAI-VIAYLMKCKGWRLA-QS--HQWVKERR---PSVNLTEDVHQQLQEYEQKI 181 (218)
Q Consensus 121 ~~VLVHC~~G~sRS~~v-v~ayLm~~~~~sl~-~A--~~~vr~~R---P~i~pn~~f~~~L~~~e~~l 181 (218)
.+||+-|.+|+|=|-.+ =+--.....|++.+ +| ...+.... -.+...|.+..++.+..+..
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~~~~~~~~DviLl~Pqi~~~~~~i~~~~ 71 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLL 71 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchhhccccCCCEEEECHHHHHHHHHHHhhc
Confidence 58999999999966443 12222255555321 12 22222222 23455777777666665543
No 159
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=25.96 E-value=1e+02 Score=21.96 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=18.3
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 027835 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (218)
Q Consensus 118 ~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~ 148 (218)
..+.+|+|+|..|. ||.. +++.+...|.
T Consensus 76 ~~~~~iv~yc~~g~-~s~~--~~~~l~~~G~ 103 (118)
T cd01449 76 TPDKPVIVYCGSGV-TACV--LLLALELLGY 103 (118)
T ss_pred CCCCCEEEECCcHH-HHHH--HHHHHHHcCC
Confidence 35679999999874 5543 3444555555
No 160
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=25.69 E-value=1.2e+02 Score=27.28 Aligned_cols=12 Identities=42% Similarity=0.789 Sum_probs=9.2
Q ss_pred cCCeEEEEcCCCC
Q 027835 119 DKACVLVHCMFGK 131 (218)
Q Consensus 119 ~~~~VLVHC~~G~ 131 (218)
.|. ||.||.+|-
T Consensus 160 dg~-ILTHcnaG~ 171 (356)
T PRK08334 160 EGN-VLTHCNAGS 171 (356)
T ss_pred CCC-EEEecCcch
Confidence 444 999998764
No 161
>PRK06179 short chain dehydrogenase; Provisional
Probab=25.22 E-value=2.1e+02 Score=23.44 Aligned_cols=62 Identities=11% Similarity=-0.066 Sum_probs=34.7
Q ss_pred HHHHhCCCcEEEecCCCCccccCCCcEEEeccCCCcccHHHHHHHHHHHHhcCCeEEEEcCCC
Q 027835 68 GLLKTQGISRVLNTVPSCQNLYKNSFTYHCLEDDKILQFDDAIQFLEQCERDKACVLVHCMFG 130 (218)
Q Consensus 68 ~~l~~~gI~~IInl~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~fI~~~~~~~~~VLVHC~~G 130 (218)
..|.+.|.+.++............++.+...+..+...++++++-+.+... +-.++|||.+.
T Consensus 22 ~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g-~~d~li~~ag~ 83 (270)
T PRK06179 22 EKLARAGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEVIARAG-RIDVLVNNAGV 83 (270)
T ss_pred HHHHHCCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHHHHhCC-CCCEEEECCCC
Confidence 556677876444322211111223455666666666777777666654332 35799999654
No 162
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=25.18 E-value=1.2e+02 Score=25.66 Aligned_cols=28 Identities=21% Similarity=0.497 Sum_probs=17.6
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q 027835 103 ILQFDDAIQFLEQCERDKACVLVHCMFGK 131 (218)
Q Consensus 103 ~~~~~~~~~fI~~~~~~~~~VLVHC~~G~ 131 (218)
...++.+++++.+... ..-+|.||.++.
T Consensus 125 l~EI~~Av~~~~~~~~-~~l~llHC~s~Y 152 (241)
T PF03102_consen 125 LEEIERAVEVLREAGN-EDLVLLHCVSSY 152 (241)
T ss_dssp HHHHHHHHHHHHHHCT---EEEEEE-SSS
T ss_pred HHHHHHHHHHHHhcCC-CCEEEEecCCCC
Confidence 4567778888744333 367999999874
No 163
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=25.00 E-value=41 Score=20.04 Aligned_cols=25 Identities=40% Similarity=0.793 Sum_probs=16.7
Q ss_pred CCccccCcc---ccccCc-cccccCCCCC
Q 027835 9 PCSVCGHYH---KYEEGE-VCGICGHRSA 33 (218)
Q Consensus 9 ~~~~~~~~~---~~~~~~-~~~~~~~~~~ 33 (218)
.|..||.-. ...+|+ +|..||.++.
T Consensus 2 ~Cp~Cg~~~~~~D~~~g~~vC~~CG~Vl~ 30 (43)
T PF08271_consen 2 KCPNCGSKEIVFDPERGELVCPNCGLVLE 30 (43)
T ss_dssp SBTTTSSSEEEEETTTTEEEETTT-BBEE
T ss_pred CCcCCcCCceEEcCCCCeEECCCCCCEee
Confidence 478888854 334677 7888988755
No 164
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=24.93 E-value=1.2e+02 Score=20.85 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=13.2
Q ss_pred HhcCCeEEEEcCCCCcHHH
Q 027835 117 ERDKACVLVHCMFGKNRSA 135 (218)
Q Consensus 117 ~~~~~~VLVHC~~G~sRS~ 135 (218)
+..+.+|+|+|..|. ||.
T Consensus 51 ~~~~~~iv~~c~~g~-~s~ 68 (99)
T cd01527 51 LVGANAIIFHCRSGM-RTQ 68 (99)
T ss_pred CCCCCcEEEEeCCCc-hHH
Confidence 345689999999984 443
No 165
>PRK02947 hypothetical protein; Provisional
Probab=24.75 E-value=1.3e+02 Score=25.25 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=26.2
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHH
Q 027835 103 ILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIV 138 (218)
Q Consensus 103 ~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv 138 (218)
.+.++++++.|.+.+.++++|+|. |.|-|..++
T Consensus 23 ~e~i~~aa~lla~~i~~a~~I~i~---G~G~S~~vA 55 (246)
T PRK02947 23 AEAIEKAADLIADSIRNGGLIYVF---GTGHSHILA 55 (246)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCcHHHHHH
Confidence 356888999999999999999988 666665554
No 166
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=24.64 E-value=59 Score=23.47 Aligned_cols=60 Identities=18% Similarity=0.193 Sum_probs=35.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH---hcCC-------CHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhCC
Q 027835 122 CVLVHCMFGKNRSAAIVIAYLMK---CKGW-------RLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGS 184 (218)
Q Consensus 122 ~VLVHC~~G~sRS~~vv~ayLm~---~~~~-------sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~~l~~~ 184 (218)
+||+-|.+| -|.++++--+-. ..|+ +..+.-..+...- .+...|.....+.+..+.....
T Consensus 2 ~Ill~C~~G--aSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~D-vill~PQv~~~~~~i~~~~~~~ 71 (99)
T cd05565 2 NVLVLCAGG--GTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYD-LVILAPQMASYYDELKKDTDRL 71 (99)
T ss_pred EEEEECCCC--CCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCC-EEEEcChHHHHHHHHHHHhhhc
Confidence 589999777 556666544433 3455 3344333333322 4556777777777777776443
No 167
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=24.55 E-value=1.1e+02 Score=28.58 Aligned_cols=61 Identities=16% Similarity=0.334 Sum_probs=37.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhCC---CccCCHHHHHHHHHHHHHHh
Q 027835 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRP---SVNLTEDVHQQLQEYEQKIF 182 (218)
Q Consensus 119 ~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~RP---~i~pn~~f~~~L~~~e~~l~ 182 (218)
.|+.+++.-..|-|.|.+.++..|........... -....| .+.|+.+...|+.+.-..+.
T Consensus 157 ~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~---~~~~~~~aLIL~PTreLa~Qi~~~~~~l~ 220 (518)
T PLN00206 157 SGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHP---SEQRNPLAMVLTPTRELCVQVEDQAKVLG 220 (518)
T ss_pred cCCCEEEEecCCCCccHHHHHHHHHHHHhhccccc---cccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 57899999999999998877766654321110000 001122 35688888887776655553
No 168
>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]
Probab=24.52 E-value=1.5e+02 Score=23.54 Aligned_cols=77 Identities=10% Similarity=0.153 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCeEEEEcC--CCCcHHHHHHHHHHHH----------hcCCCHHHHHHHHHHhCCCccCCHHHHHHHHH
Q 027835 109 AIQFLEQCERDKACVLVHCM--FGKNRSAAIVIAYLMK----------CKGWRLAQSHQWVKERRPSVNLTEDVHQQLQE 176 (218)
Q Consensus 109 ~~~fI~~~~~~~~~VLVHC~--~G~sRS~~vv~ayLm~----------~~~~sl~~A~~~vr~~RP~i~pn~~f~~~L~~ 176 (218)
+.+++...+.+ +.|+||=- .-+.|+++|-+.||.- +..++.++.+.-+...- +..+.......|..
T Consensus 16 I~rlvke~l~E-~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~Eie-fs~f~~plk~~Le~ 93 (172)
T KOG0870|consen 16 ITRLVKEVLPE-SNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALDEIE-FSSFVNPLKSALEA 93 (172)
T ss_pred HHHHHHHhCcc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHhc-hHHHhhHHHHHHHH
Confidence 34556666665 37888843 5678999999999864 34678999999888887 44455558888999
Q ss_pred HHHHHhCCCCC
Q 027835 177 YEQKIFGSVDG 187 (218)
Q Consensus 177 ~e~~l~~~~~~ 187 (218)
|.....+++-.
T Consensus 94 yk~~~k~Kk~~ 104 (172)
T KOG0870|consen 94 YKKAVKQKKLA 104 (172)
T ss_pred HHHHHHHHHHh
Confidence 98877666543
No 169
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=24.45 E-value=2e+02 Score=21.84 Aligned_cols=31 Identities=23% Similarity=0.120 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHH
Q 027835 111 QFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMK 144 (218)
Q Consensus 111 ~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayLm~ 144 (218)
+.+.+ +..+.+|+|+|..| ..+..+++.|..
T Consensus 41 ~~l~~-l~~~~~vVv~c~~g--~~a~~aa~~L~~ 71 (145)
T cd01535 41 QALEK-LPAAERYVLTCGSS--LLARFAAADLAA 71 (145)
T ss_pred HHHHh-cCCCCCEEEEeCCC--hHHHHHHHHHHH
Confidence 33443 23467899999986 344555555543
No 170
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=24.38 E-value=39 Score=21.13 Aligned_cols=14 Identities=36% Similarity=0.724 Sum_probs=10.3
Q ss_pred ccccccCCCccccC
Q 027835 2 RKRERENPCSVCGH 15 (218)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (218)
|+.-+.-.|++||+
T Consensus 23 Rnp~~A~~CRKCg~ 36 (48)
T PRK04136 23 RNPWRATKCRKCGY 36 (48)
T ss_pred CCCccccccccCCC
Confidence 55566777888886
No 171
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=24.33 E-value=1e+02 Score=26.18 Aligned_cols=55 Identities=13% Similarity=0.035 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHH------HhcCCCHHHHHHHHHH
Q 027835 105 QFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLM------KCKGWRLAQSHQWVKE 159 (218)
Q Consensus 105 ~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayLm------~~~~~sl~~A~~~vr~ 159 (218)
+.+-...+|+-+.+.+.+|.|||+.-......++-.+.. .-+.=+.+.|-+++..
T Consensus 110 Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~~~~~~~gi~HcFsGs~e~a~~~~d~ 170 (256)
T COG0084 110 QEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKEEGAPVGGVLHCFSGSAEEARKLLDL 170 (256)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccccHHHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHHc
Confidence 344455677778888899999998876666555554432 1122278888888754
No 172
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=23.98 E-value=4.3e+02 Score=24.09 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=37.5
Q ss_pred ccCCCcccHHHHHHHHHHHHhcCCeEEEEcCC-CCcHHHHHHHH--------HHHHhcCCCHHHHHHHHH
Q 027835 98 LEDDKILQFDDAIQFLEQCERDKACVLVHCMF-GKNRSAAIVIA--------YLMKCKGWRLAQSHQWVK 158 (218)
Q Consensus 98 ip~~~~~~~~~~~~fI~~~~~~~~~VLVHC~~-G~sRS~~vv~a--------yLm~~~~~sl~~A~~~vr 158 (218)
+.....--+.++.+..+-+...|-++.+||.. +-+.+.+.++. .++.+-||.++|.+-.|.
T Consensus 326 iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es~I~~aa~~Hlaaa~~~~~~l~kpg~g~d~~~~~~~ 395 (408)
T TIGR01502 326 IKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETNRSAEVTTHVGMATGARQVLAKPGMGVDEGMMIVK 395 (408)
T ss_pred eCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEecCCCCcchhHHHHH
Confidence 33333445778888888888899999999864 44444333222 223345777777765543
No 173
>PRK13936 phosphoheptose isomerase; Provisional
Probab=23.90 E-value=2.2e+02 Score=22.82 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=25.4
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHH
Q 027835 104 LQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVI 139 (218)
Q Consensus 104 ~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ 139 (218)
+.++++++.+-+.+.++++|++. |.|.|+.++.
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~---G~G~S~~~A~ 59 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILAC---GNGGSAADAQ 59 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---eCcHhHHHHH
Confidence 45667888888888999999998 7777766553
No 174
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=23.74 E-value=1.5e+02 Score=26.16 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=26.6
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 027835 127 CMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKE 159 (218)
Q Consensus 127 C~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~ 159 (218)
++-|.+|. +.=++.+++...||-++|++.|+.
T Consensus 283 ~KfG~~~~-~~~~s~~IR~G~itReeal~~v~~ 314 (343)
T TIGR03573 283 LKFGFGRA-TDHASIDIRSGRITREEAIELVKE 314 (343)
T ss_pred hhcCCCcC-chHHHHHHHcCCCCHHHHHHHHHH
Confidence 35788877 444567899999999999999999
No 175
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=23.54 E-value=38 Score=22.49 Aligned_cols=16 Identities=50% Similarity=1.113 Sum_probs=11.6
Q ss_pred CCccccCccccccCccc
Q 027835 9 PCSVCGHYHKYEEGEVC 25 (218)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (218)
-|.+||+ ++|+.+++.
T Consensus 2 ~C~KCg~-~~~e~~~v~ 17 (64)
T PF09855_consen 2 KCPKCGN-EEYESGEVR 17 (64)
T ss_pred CCCCCCC-cceecceEE
Confidence 3888988 666767666
No 176
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=23.30 E-value=4.2e+02 Score=21.77 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=38.1
Q ss_pred CHHHHHhCCCcEEEecCCC---Cccc---cCCCcEEEec---cCC-------CcccHHHHHHHHHHHHhcCCeEEEEcCC
Q 027835 66 RSGLLKTQGISRVLNTVPS---CQNL---YKNSFTYHCL---EDD-------KILQFDDAIQFLEQCERDKACVLVHCMF 129 (218)
Q Consensus 66 ~~~~l~~~gI~~IInl~~~---~~~~---~~~~~~~~~i---p~~-------~~~~~~~~~~fI~~~~~~~~~VLVHC~~ 129 (218)
-.+.|++.||..|+.-... .+.. ....+.|+.+ +.. ..+.+++..+.|.....+++.|+|-...
T Consensus 134 ~~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~~~~~Ys~~eL~~~a~~i~~~~~~~~~v~v~fnN 213 (230)
T PF01904_consen 134 VFELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGWYDYRYSDEELEEWAERIRAWAAQGKEVYVFFNN 213 (230)
T ss_dssp HHHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTTTB----HHHHHHHHHHHHHHHTCSSEEEEEE-S
T ss_pred HHHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCcccccccccCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 3578899999999975544 2221 1236666655 222 1246888888899888888887776654
No 177
>TIGR01550 DOC_P1 death-on-curing family protein. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family.
Probab=23.25 E-value=2.6e+02 Score=20.65 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=37.6
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEEc-CCCCcHHHHHHHHHHHHhcCC----CHHHHHHHHHHhC
Q 027835 104 LQFDDAIQFLEQCERDKACVLVHC-MFGKNRSAAIVIAYLMKCKGW----RLAQSHQWVKERR 161 (218)
Q Consensus 104 ~~~~~~~~fI~~~~~~~~~VLVHC-~~G~sRS~~vv~ayLm~~~~~----sl~~A~~~vr~~R 161 (218)
..++.+...+....++ |+ ..|.-|++.+++..++...|. +.+++.+++...-
T Consensus 49 ~i~~kAa~l~~~l~~~------HpF~DGNKRta~~~~~~fL~~NG~~l~~~~~e~~~~~~~vA 105 (121)
T TIGR01550 49 DIFEVSAVLLYALIRS------HPFNNANKRTALNALLLFLELNGYEFTDSPEELIDFTVGVA 105 (121)
T ss_pred CHHHHHHHHHHHHHHh------CCCccccHHHHHHHHHHHHHHCCcCCCCCHHHHHHHHHHHH
Confidence 3566776666665554 33 378889999999999998886 5777777776664
No 178
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=23.03 E-value=46 Score=18.14 Aligned_cols=25 Identities=20% Similarity=0.537 Sum_probs=16.0
Q ss_pred CCCccccCccccccCccccccCCCCC
Q 027835 8 NPCSVCGHYHKYEEGEVCGICGHRSA 33 (218)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (218)
=.|..|+ |.++.+...|..|+..-|
T Consensus 5 W~C~~C~-~~N~~~~~~C~~C~~~rp 29 (30)
T PF00641_consen 5 WKCPSCT-FMNPASRSKCVACGAPRP 29 (30)
T ss_dssp EEETTTT-EEEESSSSB-TTT--BTT
T ss_pred ccCCCCc-CCchHHhhhhhCcCCCCc
Confidence 3577787 777888888888887643
No 179
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=22.86 E-value=62 Score=20.93 Aligned_cols=27 Identities=30% Similarity=0.883 Sum_probs=20.7
Q ss_pred cccCCCccccCccccccCccccccCCCCCC
Q 027835 5 ERENPCSVCGHYHKYEEGEVCGICGHRSAS 34 (218)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (218)
++-..|..||-|.= .+.|-.||....+
T Consensus 3 s~mr~C~~CgvYTL---k~~CP~CG~~t~~ 29 (56)
T PRK13130 3 SKIRKCPKCGVYTL---KEICPVCGGKTKN 29 (56)
T ss_pred ccceECCCCCCEEc---cccCcCCCCCCCC
Confidence 44557999999987 7888888887543
No 180
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=22.59 E-value=3.4e+02 Score=24.22 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=16.9
Q ss_pred cHHHHHHHHHHHHhcCCe--EEEEcCCCCc
Q 027835 105 QFDDAIQFLEQCERDKAC--VLVHCMFGKN 132 (218)
Q Consensus 105 ~~~~~~~fI~~~~~~~~~--VLVHC~~G~s 132 (218)
.++++-+.++..+++|.+ +|.||..+.-
T Consensus 158 ~~~ei~~av~~~r~~g~~~i~LLhC~s~YP 187 (347)
T COG2089 158 TIEEIEEAVAILRENGNPDIALLHCTSAYP 187 (347)
T ss_pred cHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Confidence 344444445545555555 9999997643
No 181
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=22.46 E-value=3.7e+02 Score=21.83 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=23.9
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEEcCCCCc
Q 027835 103 ILQFDDAIQFLEQCERDKACVLVHCMFGKN 132 (218)
Q Consensus 103 ~~~~~~~~~fI~~~~~~~~~VLVHC~~G~s 132 (218)
.--+..+.+.+..+...|-++.+||..|-+
T Consensus 179 ~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 179 VGGLTESRRAADLAEAFGIRVMVHGTLESS 208 (229)
T ss_pred cCCHHHHHHHHHHHHHcCCEEeecCCCCCH
Confidence 345778888888888999999999975543
No 182
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=22.38 E-value=1.8e+02 Score=22.69 Aligned_cols=68 Identities=22% Similarity=0.314 Sum_probs=42.8
Q ss_pred HHHHHHHHHH--hcCCeEEEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHH
Q 027835 108 DAIQFLEQCE--RDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQK 180 (218)
Q Consensus 108 ~~~~fI~~~~--~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~~ 180 (218)
.+.++|.+.. ..+.+|+|-|-.|.+=.=++++|-.+...|+...- --..|.-..++.+..++..++..
T Consensus 11 ~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v-----~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF03853_consen 11 AIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV-----YLVGPPEKLSEDAKQQLEILKKM 80 (169)
T ss_dssp HHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE-----EEEESSSSTSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE-----EEEeccccCCHHHHHHHHHHHhc
Confidence 3456677777 66799999999998877677777777777775221 11223335566677777666655
No 183
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=21.79 E-value=74 Score=22.51 Aligned_cols=57 Identities=19% Similarity=0.319 Sum_probs=33.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHH---HHhcCC-------CHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHH
Q 027835 122 CVLVHCMFGKNRSAAIVIAYL---MKCKGW-------RLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKI 181 (218)
Q Consensus 122 ~VLVHC~~G~sRS~~vv~ayL---m~~~~~-------sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~~l 181 (218)
+||+-|.+|++=| . ++--+ +...|+ +..++-..... .-.+...|.+...+.++++..
T Consensus 1 kIl~~Cg~G~sTS-~-~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~-~Diil~~Pqv~~~~~~i~~~~ 67 (96)
T cd05564 1 KILLVCSAGMSTS-I-LVKKMKKAAEKRGIDAEIEAVPESELEEYIDD-ADVVLLGPQVRYMLDEVKKKA 67 (96)
T ss_pred CEEEEcCCCchHH-H-HHHHHHHHHHHCCCceEEEEecHHHHHHhcCC-CCEEEEChhHHHHHHHHHHHh
Confidence 4899999999755 2 33222 223344 34443332222 225666888888888887755
No 184
>PRK05569 flavodoxin; Provisional
Probab=21.78 E-value=1.4e+02 Score=22.06 Aligned_cols=70 Identities=9% Similarity=0.093 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCc-HHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHH
Q 027835 106 FDDAIQFLEQCERDKACVLVHCMFGKN-RSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKI 181 (218)
Q Consensus 106 ~~~~~~fI~~~~~~~~~VLVHC~~G~s-RS~~vv~ayLm~~~~~sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~~l 181 (218)
+..+++.+....-++++|.+-+..|.+ ..+.-.+.-++...|+..-..+.. ...|+..-++++.+|-+.|
T Consensus 69 ~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~~~~------~~~p~~~~~~~~~~~g~~l 139 (141)
T PRK05569 69 MAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGDLAV------NESPNKEELNSAKELGKKL 139 (141)
T ss_pred HHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeeeEEE------ccCCCHHHHHHHHHHHHHH
Confidence 444444333223367899999998865 232222333445566654332111 2458888888888887766
No 185
>PF12643 MazG-like: MazG-like family
Probab=21.59 E-value=3.2e+02 Score=19.66 Aligned_cols=51 Identities=18% Similarity=0.140 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHH-hcCCC---HHHHHHHHHHhCCCccCC-HHHHHHHHHHHHHHhC
Q 027835 133 RSAAIVIAYLMK-CKGWR---LAQSHQWVKERRPSVNLT-EDVHQQLQEYEQKIFG 183 (218)
Q Consensus 133 RS~~vv~ayLm~-~~~~s---l~~A~~~vr~~RP~i~pn-~~f~~~L~~~e~~l~~ 183 (218)
-+..++.+|+|. +.|++ +++++..=-.....-.|. .....-|..+.+.|..
T Consensus 41 LAdvii~~ylLa~rLGid~~~lD~~i~~KL~~~~~k~~~~Ek~~gdls~l~~~l~~ 96 (98)
T PF12643_consen 41 LADVIIYCYLLADRLGIDFRELDEIIKEKLKKNIEKYPVLEKWYGDLSKLEQHLKK 96 (98)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcccccchHHHHhccHHHHHHHHhc
Confidence 355788888887 45999 555554321222122222 3455556666666543
No 186
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=21.52 E-value=2.3e+02 Score=21.54 Aligned_cols=41 Identities=17% Similarity=0.464 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhCC
Q 027835 107 DDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRP 162 (218)
Q Consensus 107 ~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~RP 162 (218)
+.+++|+++ ..++-|++=| +-||+.+.| ++.+++++...|=
T Consensus 65 ~~i~~fl~~--~~~~vViiD~-----------lEYL~l~Ng--F~~v~KFL~~LkD 105 (136)
T PF05763_consen 65 DTIVRFLKE--NGNGVVIIDG-----------LEYLILENG--FESVLKFLASLKD 105 (136)
T ss_pred HHHHHHHHh--CCCcEEEEec-----------HHHHHHHcC--HHHHHHHHHHhHH
Confidence 344455554 3357788887 569999888 6788888887773
No 187
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=21.34 E-value=99 Score=27.41 Aligned_cols=21 Identities=24% Similarity=0.494 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCeEEEEcCCCC
Q 027835 111 QFLEQCERDKACVLVHCMFGK 131 (218)
Q Consensus 111 ~fI~~~~~~~~~VLVHC~~G~ 131 (218)
++-.+.+..|..||.||.+|-
T Consensus 128 ~~g~~~I~~g~~ILThcnsg~ 148 (329)
T PRK06371 128 EYGNELIKNGARILTHCNAGA 148 (329)
T ss_pred HHHHHHcCCCCEEEEeCCCCc
Confidence 333444557889999998884
No 188
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=21.26 E-value=96 Score=28.22 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=27.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhC
Q 027835 124 LVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERR 161 (218)
Q Consensus 124 LVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~R 161 (218)
..||.+ -+..|- ++.++|...++++.+|++.+...-
T Consensus 55 ~~~Cf~-Cg~~Gd-~i~fv~~~~~~sf~eA~~~La~~~ 90 (415)
T TIGR01391 55 FYHCFG-CGAGGD-AIKFLMEIEGISFVEAVEELAKRA 90 (415)
T ss_pred cEEECC-CCCCCC-HHHHHHHHhCCCHHHHHHHHHHHc
Confidence 478863 344444 468999999999999999998764
No 189
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=21.17 E-value=73 Score=27.10 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 027835 112 FLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (218)
Q Consensus 112 fI~~~~~~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~s 149 (218)
|-...+..+.+|+++|..|+. +..+++++...|..
T Consensus 223 ~~~~g~~~~~~ii~yC~~G~~---A~~~~~~l~~~G~~ 257 (281)
T PRK11493 223 FFGRGVSFDRPIIASCGSGVT---AAVVVLALATLDVP 257 (281)
T ss_pred HHhcCCCCCCCEEEECCcHHH---HHHHHHHHHHcCCC
No 190
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=21.05 E-value=95 Score=29.85 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=28.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHH---hcCCCHHHHHHHHHH
Q 027835 121 ACVLVHCMFGKNRSAAIVIAYLMK---CKGWRLAQSHQWVKE 159 (218)
Q Consensus 121 ~~VLVHC~~G~sRS~~vv~ayLm~---~~~~sl~~A~~~vr~ 159 (218)
.+..|||..|. +++++++||+ ..+++.++|++.++.
T Consensus 161 ~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~ 199 (601)
T TIGR02094 161 DPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRK 199 (601)
T ss_pred CceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 78999999987 4888889865 357889999876654
No 191
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=20.99 E-value=1.6e+02 Score=24.89 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=21.7
Q ss_pred cEEEcCh-hhcCCHHHHHhCCCcEEEecCC
Q 027835 55 FLYLGSY-DNASRSGLLKTQGISRVLNTVP 83 (218)
Q Consensus 55 ~lylG~~-~~~~~~~~l~~~gI~~IInl~~ 83 (218)
.+..|.+ ....=.+++++++|+.|||.+=
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATH 75 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATH 75 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCC
Confidence 4778888 4334447789999999999764
No 192
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=20.88 E-value=67 Score=24.02 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=23.2
Q ss_pred CCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhC
Q 027835 129 FGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERR 161 (218)
Q Consensus 129 ~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~R 161 (218)
.|++|+.|.+++||+.....+ ..-++.+...|
T Consensus 23 lgi~R~vA~tlv~L~~~~E~s-S~~IE~~sgLR 54 (124)
T COG4738 23 LGIPRNVATTLVCLAKGDEAS-SREIERVSGLR 54 (124)
T ss_pred cCCCchHHHHHHHHhcCcchh-hhhhHHhhcCC
Confidence 589999999999999865553 33355555555
No 193
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=20.74 E-value=3.2e+02 Score=19.38 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=32.2
Q ss_pred HHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHH
Q 027835 142 LMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKI 181 (218)
Q Consensus 142 Lm~~~~~sl~~A~~~vr~~RP~i~pn~~f~~~L~~~e~~l 181 (218)
|.+..|++++++...+........+.......|......+
T Consensus 53 llr~~G~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (99)
T cd04765 53 LLYEKGYTIEGAKQALKEDGAAAIREEEAEERLPSIRAEL 92 (99)
T ss_pred HHHHCCCCHHHHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence 3456799999999999988887888888888888776655
No 194
>PRK15043 transcriptional regulator MirA; Provisional
Probab=20.61 E-value=1.9e+02 Score=24.50 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=45.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCC------------ccCCHHHHHHHHHHHHHH
Q 027835 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPS------------VNLTEDVHQQLQEYEQKI 181 (218)
Q Consensus 119 ~~~~VLVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~RP~------------i~pn~~f~~~L~~~e~~l 181 (218)
.|+++|+-|..|-.+....+.|++....|+..+--=.-+..-||. ..+++.+.++|+.|.++-
T Consensus 161 ~~~~~Ll~~~~~~~~~~lwl~a~~l~~~g~~v~vl~~~~~~~~pelf~~~~~~~~~~~~~t~~q~~~~~~w~~~g 235 (243)
T PRK15043 161 QGKDALVVGWNIHDTTRLWLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQLTSWQEQG 235 (243)
T ss_pred CCCCEEEEeCCCCCcHHHHHHHHHHhcCCceEEEeCCcccccChhhcCCCeEEEEeCCCCCHHHHHHHHHHHHhC
Confidence 456799999999999999999999998888422111112223332 357889999999998764
No 195
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=20.41 E-value=1.4e+02 Score=23.06 Aligned_cols=35 Identities=11% Similarity=0.043 Sum_probs=19.9
Q ss_pred EcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 027835 126 HCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKER 160 (218)
Q Consensus 126 HC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~ 160 (218)
+|..|.+..-+....--.+..+|+.++|++.++..
T Consensus 128 ~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~ 162 (182)
T cd01906 128 ATAIGSGSQYALGILEKLYKPDMTLEEAIELALKA 162 (182)
T ss_pred EEEECCCcHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 44455554433333333334577899998877654
No 196
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=20.21 E-value=1.5e+02 Score=25.83 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=27.3
Q ss_pred CCeE--EEEcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHhC
Q 027835 120 KACV--LVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERR 161 (218)
Q Consensus 120 ~~~V--LVHC~~G~sRS~~vv~ayLm~~~~~sl~~A~~~vr~~R 161 (218)
|.++ +++..+|-| +|+++++.|.. |+++++..+......
T Consensus 26 g~~i~~~fD~i~GTS-tGgiIA~~la~--g~s~~e~~~~y~~~~ 66 (312)
T cd07212 26 GRPIRELFDWIAGTS-TGGILALALLH--GKSLREARRLYLRMK 66 (312)
T ss_pred CCCchhhccEEEeeC-hHHHHHHHHHc--CCCHHHHHHHHHHhh
Confidence 4454 588888988 55555555544 899999999866654
No 197
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=20.21 E-value=62 Score=16.76 Aligned_cols=22 Identities=23% Similarity=0.767 Sum_probs=14.3
Q ss_pred CCccccCccccccCccccccCCC
Q 027835 9 PCSVCGHYHKYEEGEVCGICGHR 31 (218)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (218)
.|..|+ +.++.+...|..|+++
T Consensus 4 ~C~~C~-~~N~~~~~~C~~C~~p 25 (26)
T smart00547 4 ECPACT-FLNFASRSKCFACGAP 25 (26)
T ss_pred cCCCCC-CcChhhhccccccCCc
Confidence 466665 5666666777777654
No 198
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=20.16 E-value=2e+02 Score=19.15 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHh
Q 027835 135 AAIVIAYLMKCKGWRLAQSHQWVKER 160 (218)
Q Consensus 135 ~~vv~ayLm~~~~~sl~~A~~~vr~~ 160 (218)
+|=++=||++. |+++.+|...|-..
T Consensus 4 ATdlAD~LVr~-GipFR~AH~iVg~~ 28 (70)
T PF14698_consen 4 ATDLADYLVRK-GIPFREAHHIVGRL 28 (70)
T ss_dssp HHHHHHHHHHT-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 45567788888 99999999877554
Done!