BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027836
(218 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FQ24|TON1B_ARATH Protein TONNEAU 1b OS=Arabidopsis thaliana GN=TON1B PE=1 SV=1
Length = 257
Score = 284 bits (727), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 140/194 (72%), Positives = 160/194 (82%), Gaps = 3/194 (1%)
Query: 1 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIE +EGLPPALLGS
Sbjct: 1 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIENNEGLPPALLGS 60
Query: 61 CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
CNDRA+QLHASPSGRLL+ALICEYLDWAQLNHT+KVY PECN KD+WK+E+++FS NG
Sbjct: 61 CNDRARQLHASPSGRLLSALICEYLDWAQLNHTLKVYQPECNSAKDSWKSEIRDFSINNG 120
Query: 121 YDLNKNGDSAPLLLDVLEGFLKFENSSQAR-ITGRRQPDSESMSHFESRNARRPSSSSVA 179
Y+LN+N DS PLLLDVLEGFLKFEN +Q + RR+ ++ES ++RN P SS +
Sbjct: 121 YELNRNEDSRPLLLDVLEGFLKFENMTQVMGGSSRRESETESSLSLDTRNP--PRRSSAS 178
Query: 180 GGLPPLGRHLIGEQ 193
LP R + Q
Sbjct: 179 DSLPHQRRSVSASQ 192
>sp|Q9FQ25|TON1A_ARATH Protein TONNEAU 1a OS=Arabidopsis thaliana GN=TON1A PE=1 SV=1
Length = 260
Score = 271 bits (694), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 141/194 (72%), Positives = 161/194 (82%), Gaps = 3/194 (1%)
Query: 1 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIE +EG PPALLGS
Sbjct: 1 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIENNEGPPPALLGS 60
Query: 61 CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
CNDRA++LHASPSGRLL+ALICEYLDWAQLNHT+ VY PE NL KD+WK+EL++F+S NG
Sbjct: 61 CNDRARKLHASPSGRLLSALICEYLDWAQLNHTLIVYQPESNLPKDSWKSELRDFNSNNG 120
Query: 121 YDLNKNGDSAPLLLDVLEGFLKFENSSQAR-ITGRRQPDSESMSHFESRNARRPSSSSVA 179
++LN+NGDS PLLLDVLEGFLKFE+ +Q + RR ++ES S ESRN P SS +
Sbjct: 121 FELNRNGDSGPLLLDVLEGFLKFESMTQGMGSSSRRDSETESSSSLESRNP--PRRSSAS 178
Query: 180 GGLPPLGRHLIGEQ 193
LPP R + Q
Sbjct: 179 DSLPPQRRPVSASQ 192
>sp|O95684|FR1OP_HUMAN FGFR1 oncogene partner OS=Homo sapiens GN=FGFR1OP PE=1 SV=1
Length = 399
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 60/96 (62%), Gaps = 8/96 (8%)
Query: 7 EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAK 66
E +L+ L+ +TLE GVL +I+AELRA+VF A+EE+++V E P + N+ K
Sbjct: 12 EDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKV----ENKTPLV----NESLK 63
Query: 67 QLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECN 102
+ + GRL+ +L+ E+L + L+ T+ V+ PE +
Sbjct: 64 KFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETS 99
>sp|Q4R7V3|FR1OP_MACFA FGFR1 oncogene partner OS=Macaca fascicularis GN=FGFR1OP PE=2 SV=1
Length = 379
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 60/96 (62%), Gaps = 8/96 (8%)
Query: 7 EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAK 66
E +L+ L+ +TLE GVL +I+AELRA+VF A+EE+++V E P + N+ K
Sbjct: 12 EDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKV----ENKTPLV----NESLK 63
Query: 67 QLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECN 102
+ + GRL+ +L+ E+L + L+ T+ V+ PE +
Sbjct: 64 KFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETS 99
>sp|Q2YDD1|FR1OP_BOVIN FGFR1 oncogene partner OS=Bos taurus GN=FGFR1OP PE=2 SV=1
Length = 399
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 60/96 (62%), Gaps = 8/96 (8%)
Query: 7 EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAK 66
E +L+ L+ +TLE GVL +I+AELRA+VF A+EE+++V E P + N+ K
Sbjct: 12 EDTELRYLLVQTLENSGVLNRIKAELRAAVFLALEEQEKV----ENKTPLV----NESLK 63
Query: 67 QLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECN 102
+ + GRL+ +L+ E+L + L+ T+ V+ PE +
Sbjct: 64 KFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETS 99
>sp|Q4V7C1|FR1OP_RAT FGFR1 oncogene partner OS=Rattus norvegicus GN=Fgfr1op PE=2 SV=1
Length = 399
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 8/93 (8%)
Query: 10 DLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLH 69
+L+ L+ +TLE GVL +I+AELRA+VF A+EE+++V E P + N+ K+
Sbjct: 15 ELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKV----ENKTPLV----NESLKKFL 66
Query: 70 ASPSGRLLTALICEYLDWAQLNHTMKVYLPECN 102
+ GRL+ +L+ E+L + L+ T+ V+ PE +
Sbjct: 67 NTKDGRLVASLVAEFLQFFNLDFTLAVFHPETS 99
>sp|Q66JX5|FR1OP_MOUSE FGFR1 oncogene partner OS=Mus musculus GN=Fgfr1op PE=1 SV=1
Length = 399
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 8/93 (8%)
Query: 10 DLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLH 69
+L+ L+ +TLE GVL +I+AELRA+VF A+EE+++V E P + N+ K+
Sbjct: 15 ELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKV----ENKTPLV----NENLKKFL 66
Query: 70 ASPSGRLLTALICEYLDWAQLNHTMKVYLPECN 102
+ GRL+ +L+ E+L + L+ T+ V+ PE +
Sbjct: 67 NTKDGRLVASLVAEFLQFFNLDFTLAVFHPETS 99
>sp|Q4V7R8|FOPNL_XENLA LisH domain-containing protein FOPNL OS=Xenopus laevis GN=Fopnl
PE=2 SV=1
Length = 169
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 30/137 (21%)
Query: 10 DLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLH 69
DLK +V TLEK+GV+ +++A +RA VFEA++ D P +L
Sbjct: 6 DLKAVVKDTLEKRGVMGQLKARVRAEVFEALD--------DRSEPKPVL----------- 46
Query: 70 ASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNK---- 125
SP L+ LI EYL + + ++T V E L + + F +K +LN
Sbjct: 47 -SPENLLINELIREYLAFNKYSYTSSVLTAETGLSEVPLD---RSFLTK---ELNVVEDL 99
Query: 126 NGDSAPLLLDVLEGFLK 142
N S P+L ++ FLK
Sbjct: 100 NSQSVPILYGIVAHFLK 116
>sp|Q9CZS3|FOPNL_MOUSE LisH domain-containing protein FOPNL OS=Mus musculus GN=Fopnl PE=2
SV=1
Length = 174
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 32/176 (18%)
Query: 8 MMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQ 67
+ +LK ++ TLEK+GVL ++A +RA VF A++ +DR +
Sbjct: 4 VTELKAVLKDTLEKRGVLGHLKARIRAEVFNALD--------------------DDREPR 43
Query: 68 LHASPSGRLLTALICEYLDWAQLNHTMKVYL-----PECNLQKDAWKAELKEFSSKNGYD 122
S L+ LI EYL++ + +T V + P L + EL N ++
Sbjct: 44 PSLSHENLLINELIREYLEFNKYKYTASVLIAESGQPVVPLDRQFLIREL------NAFE 97
Query: 123 LNKNGDSAPLLLDVLEGFLKFENSSQARITGRRQPDSESMSHFESRNARRPSSSSV 178
+K+ +S PLL +L FL+ + + H + +RRP V
Sbjct: 98 ESKD-NSIPLLYGILAHFLRGPPDGAQNVLLTESTLHPATKHLSWKPSRRPDDDHV 152
>sp|Q5ZJ24|FOPNL_CHICK LisH domain-containing protein FOPNL OS=Gallus gallus GN=FOPNL PE=2
SV=1
Length = 175
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 32/139 (23%)
Query: 8 MMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQ 67
+ +LK ++ TLEK+G L +I+A +RA VF A++++ E PP C++
Sbjct: 4 IAELKAVLKDTLEKRGALRQIKARIRAEVFNALDDQ------SEPRPPL----CHE---- 49
Query: 68 LHASPSGRLLTALICEYLDWAQLNHTMKVYL-----PECNLQKDAWKAELKEFSSKNGYD 122
L+ LI EYL++ + ++ V PE L + EL
Sbjct: 50 ------NLLINELIREYLEFNKYKYSASVLTAEAGQPEVPLDRQFLVKELNIVE------ 97
Query: 123 LNKNGDSAPLLLDVLEGFL 141
+ NG S PLL ++ FL
Sbjct: 98 -DANGKSVPLLYGIISHFL 115
>sp|Q96NB1|FOPNL_HUMAN LisH domain-containing protein FOPNL OS=Homo sapiens GN=FOPNL PE=1
SV=1
Length = 174
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 32/140 (22%)
Query: 8 MMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQ 67
+ +LK ++ TLEKKGVL ++A +RA VF A+++ DR +
Sbjct: 4 VAELKAVLKDTLEKKGVLGHLKARIRAEVFNALDD--------------------DREPR 43
Query: 68 LHASPSGRLLTALICEYLDWAQLNHTMKVYL-----PECNLQKDAWKAELKEFSSKNGYD 122
S L+ LI EYL++ + +T V + P L + EL N ++
Sbjct: 44 PSLSHENLLINELIREYLEFNKYKYTASVLIAESGQPVVPLDRQFLIHEL------NAFE 97
Query: 123 LNKNGDSAPLLLDVLEGFLK 142
+K+ ++ PLL +L FL+
Sbjct: 98 ESKD-NTIPLLYGILAHFLR 116
>sp|P0CAX8|TGAP1_MOUSE T-cell activation GTPase-activating protein 1 OS=Mus musculus
GN=Tagap1 PE=2 SV=1
Length = 505
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 31/37 (83%)
Query: 10 DLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRV 46
+L+ L+ +TLE GVL +I+AELRA+VF A+EE+++V
Sbjct: 15 ELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKV 51
>sp|C6BSW8|MUTS2_DESAD MutS2 protein OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM
2638 / NCIB 8403 / VKM B-1763) GN=mutS2 PE=3 SV=1
Length = 769
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 27/174 (15%)
Query: 61 CNDR-AKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECN-----LQKDAWKAELKE 114
NDR L + GRL ++ +Y + + + ++L E N L++ ELK
Sbjct: 191 TNDRYVLPLKTNFKGRL-QGIVHDYSNTGETCYFEPMFLVELNNSMQELKQQERTEELKI 249
Query: 115 FSSKNG-----YDLNKNGDSAPLLLDVLEGFLKFENSSQARITGRRQPDSESMSHFESRN 169
+ G YD + + DVL+ + F ++ +A D +S + F+ R
Sbjct: 250 LTYLTGLVRSEYDQCEAAYGFLVEYDVLQAKINFADAVKAVAV-----DVQSGAGFDLRG 304
Query: 170 ARRPSSSSVAGGLPPLGRHLIGEQQGLPCLLTGK--------MSTIGDMTAMSF 215
AR P +S GG+ PL L +Q+ L +++G + T+G ++AM+F
Sbjct: 305 ARHPLLASAVGGVNPLNIELPTDQKVL--IVSGGNAGGKTVCLKTVGLLSAMAF 356
>sp|O43303|CP110_HUMAN Centriolar coiled-coil protein of 110 kDa OS=Homo sapiens GN=CCP110
PE=1 SV=3
Length = 1012
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 16/95 (16%)
Query: 134 LDVLEGFLKFENSSQARITG------------RRQPDSESMSHFESRNARRPSSSSVAGG 181
LD + G L +N Q + G +Q DS ++SH E+ + SS++
Sbjct: 139 LDKIAGILPLDNEDQCKTDGIDLARDSEGFNSPKQCDSSNISHVENEAFPKTSSATPQET 198
Query: 182 LPPLGRHLIGEQQGLPCLLTGKMSTIGDMTAMSFQ 216
L G + EQQ LP L I D MS Q
Sbjct: 199 LISDGPFSVNEQQDLPLL----AEVIPDPYVMSLQ 229
>sp|Q2KI89|ARMC9_BOVIN LisH domain-containing protein ARMC9 OS=Bos taurus GN=ARMC9 PE=2
SV=1
Length = 665
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 77 LTALICEYLDWAQLNHTMKVYLPECNLQ 104
L L+ EYLD+A+ T+K +L EC ++
Sbjct: 11 LLGLVKEYLDFAEFEDTLKTFLKECKIK 38
>sp|Q3KI28|GATB_PSEPF Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Pseudomonas fluorescens (strain Pf0-1) GN=gatB PE=1
SV=1
Length = 481
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 84 YLDWAQLNHTMK-VYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDVLE 138
+LD A + T+K V + +L++DA K+ +EFS G DLN+ G PLL V E
Sbjct: 104 HLDIALEDGTVKRVGITRAHLEEDAGKSLHEEFSGATGIDLNRAG--TPLLEIVSE 157
>sp|Q5P9B1|MNME_ANAMM tRNA modification GTPase MnmE OS=Anaplasma marginale (strain St.
Maries) GN=mnmE PE=3 SV=1
Length = 443
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 20 EKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLHAS 71
+ G L ++ E R+S+ + + + + I+ + + P +L S +DR K+LH S
Sbjct: 146 QSSGFLERLYEEWRSSLVDILSDLEAYIDFPDDVSPQILRSVHDRVKELHNS 197
>sp|Q88KH5|GREB_PSEPK Transcription elongation factor GreB OS=Pseudomonas putida (strain
KT2440) GN=greB PE=3 SV=1
Length = 162
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 89 QLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNK 125
+L+H +VY PE QK AW A L + S Y NK
Sbjct: 17 ELDHLWRVYRPEIT-QKVAWAASLGDRSENADYQYNK 52
>sp|Q7TME2|SPAG5_MOUSE Sperm-associated antigen 5 OS=Mus musculus GN=Spag5 PE=1 SV=1
Length = 1165
Score = 30.4 bits (67), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 4 YTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEG 52
+ +E M+LK + L+++ VLAK +LR +V E I+EE +V ++ G
Sbjct: 742 WQKEEMELKHIQAELLQQQAVLAKEVQDLRETV-EFIDEESQVAHRELG 789
>sp|A1A5P5|ARMC9_RAT LisH domain-containing protein ARMC9 OS=Rattus norvegicus GN=Armc9
PE=2 SV=1
Length = 730
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 77 LTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDV 136
L L+ EYLD+A+ T+K + EC K + K G L K+ +S + D+
Sbjct: 11 LLGLVKEYLDFAEFEDTLKTFSKEC-------KVKGKPLCKTVGGSLKKDSNSLMIQKDL 63
Query: 137 LEGF 140
+ F
Sbjct: 64 VAAF 67
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,014,681
Number of Sequences: 539616
Number of extensions: 3276106
Number of successful extensions: 9282
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 9257
Number of HSP's gapped (non-prelim): 30
length of query: 218
length of database: 191,569,459
effective HSP length: 113
effective length of query: 105
effective length of database: 130,592,851
effective search space: 13712249355
effective search space used: 13712249355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)