Query 027836
Match_columns 218
No_of_seqs 123 out of 204
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 18:24:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027836.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2201-2205//hhsearch_pdb/027836hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d68_A FOP, FGFR1OP; alpha hel 1.0 1 1 142.6 4.0 77 61-139 5-81 (82)
2 2xtc_A F-box-like/WD repeat-co 1.0 1 1 26.0 1.8 32 75-106 6-37 (90)
3 1uuj_A Platelet-activating fac 1.0 1 1 21.1 1.8 30 76-105 12-41 (88)
4 3mhs_B Protein SUS1; multi-pro 1.0 1 1 20.4 4.3 71 6-86 20-90 (96)
5 1vyh_C Platelet-activating fac 1.0 1 1 18.2 0.0 29 76-104 10-38 (410)
6 4dhx_B Enhancer of yellow 2 tr 1.0 1 1 17.6 5.4 29 8-36 9-37 (101)
7 1kaf_A Transcription regulator 1.0 1 1 14.5 2.5 20 5-24 4-23 (108)
8 2pf4_E Small T antigen; PP2A, 1.0 1 1 13.9 1.0 10 82-91 11-20 (174)
9 3pq1_A Poly(A) RNA polymerase; 1.0 1 1 13.1 2.0 16 76-91 231-246 (464)
10 3r8s_U 50S ribosomal protein L 1.0 1 1 12.8 -1.2 44 164-208 39-83 (102)
No 1
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=1.00 E-value=1 Score=142.62 Aligned_cols=77 Identities=25% Similarity=0.442 Sum_probs=71.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 7621012478902689999999999883994100010012477457889999999875299889999998518999998
Q 027836 61 CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDVLEG 139 (218)
Q Consensus 61 ~N~~~k~~~~s~eg~Lin~LI~EYLe~~gl~~TlsVF~~Esg~p~~~l~rEl~~L~~~lgl~~n~~~~~~PLL~~Li~~ 139 (218)
||+++|+++++++|+++++||+|||+|+||+||++||.||||+++.+..| ..|++++|+..+..+.+.|||+.|++.
T Consensus 5 ~N~~~k~~~~s~~GrLi~~LVrEyLef~~l~~TlsVf~pEs~l~~~~~~R--~~La~eLgl~~~~~~~~~PLL~~ll~~ 81 (82)
T 2d68_A 5 VNESLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGR--ENLARDLGIIEAEGTVGGPLLLEVIRR 81 (82)
T ss_dssp CCHHHHHHHTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCC---CCH--HHHHHHTTCCCCTTTTTSCHHHHHHHH
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCH--HHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 05789998718522899999999999849821677631302898887799--999998499888778897969999850
No 2
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=1.00 E-value=1 Score=25.97 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHCCCCCCHH
Q ss_conf 89999999999883994100010012477457
Q 027836 75 RLLTALICEYLDWAQLNHTMKVYLPECNLQKD 106 (218)
Q Consensus 75 ~Lin~LI~EYLe~~gl~~TlsVF~~Esg~p~~ 106 (218)
.-+|.||.-||+-.||.||+-+|..|++....
T Consensus 6 devN~LI~RYLqEsGf~hsAf~f~~Es~i~~~ 37 (90)
T 2xtc_A 6 DEVNFLVYRYLQESGFSHSAFTFGIESHISQS 37 (90)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 88879999999984878899999988667855
No 3
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=1.00 E-value=1 Score=21.10 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHCCCCCCH
Q ss_conf 999999999988399410001001247745
Q 027836 76 LLTALICEYLDWAQLNHTMKVYLPECNLQK 105 (218)
Q Consensus 76 Lin~LI~EYLe~~gl~~TlsVF~~Esg~p~ 105 (218)
-++-=|.+||.++||.-+.++|..|++++.
T Consensus 12 EL~kaI~~YL~~~~~~~~~~alr~e~~~~~ 41 (88)
T 1uuj_A 12 ELNRAIADYLRSNGYEEAYSVFKKEAELDM 41 (88)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
T ss_conf 999999999986471899999999856888
No 4
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=1.00 E-value=1 Score=20.41 Aligned_cols=71 Identities=11% Similarity=0.172 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 98999999999999971519999999999999996544544310489996544767621012478902689999999999
Q 027836 6 REMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLHASPSGRLLTALICEYL 85 (218)
Q Consensus 6 ~e~~ELkd~V~~tLE~~GvL~kIRAeLRA~Vf~aLee~~~~~~k~~~~~p~l~~~~N~~~k~~~~s~eg~Lin~LI~EYL 85 (218)
.|-+-|++++.+.|...|--++||+..|..+... +.+ ....++..+-|++....+..-..-+..=|++||
T Consensus 20 Ge~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~----~~v------t~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL 89 (96)
T 3mhs_B 20 GNYELISNELKARLLQEGWVDKVKDLTKSEMNIN----EST------NFTQILSTVEPKALEMVSDSTRETVLKQIREFL 89 (96)
T ss_dssp THHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----TCC------CHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----CCC------CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 7599999999999988885999999999999754----799------999999998289998798999999999999999
Q ss_pred H
Q ss_conf 8
Q 027836 86 D 86 (218)
Q Consensus 86 e 86 (218)
+
T Consensus 90 ~ 90 (96)
T 3mhs_B 90 E 90 (96)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=18.17 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHCCCCCC
Q ss_conf 99999999998839941000100124774
Q 027836 76 LLTALICEYLDWAQLNHTMKVYLPECNLQ 104 (218)
Q Consensus 76 Lin~LI~EYLe~~gl~~TlsVF~~Esg~p 104 (218)
-++-+|..||+.+||.-++.+|..|++.+
T Consensus 10 ~~~~~i~~~l~~~~~~~~~~~~~~e~~~~ 38 (410)
T 1vyh_C 10 ELNRAIADYLRSNGYEEAYSVFKKEAELD 38 (410)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHCCC
T ss_conf 99999999987668399999999986899
No 6
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=17.61 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 99999999999997151999999999999
Q 027836 8 MMDLKTLVTRTLEKKGVLAKIRAELRASV 36 (218)
Q Consensus 8 ~~ELkd~V~~tLE~~GvL~kIRAeLRA~V 36 (218)
..+||..|.+.|-.+|-..+|+..||...
T Consensus 9 e~~lka~I~~~LveSGe~erL~~lL~~rL 37 (101)
T 4dhx_B 9 DAQMRAAINQKLIETGERERLKELLRAKL 37 (101)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 68999999999998677999999999888
No 7
>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} SCOP: d.199.1.1
Probab=1.00 E-value=1 Score=14.53 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHCH
Q ss_conf 79899999999999997151
Q 027836 5 TREMMDLKTLVTRTLEKKGV 24 (218)
Q Consensus 5 t~e~~ELkd~V~~tLE~~Gv 24 (218)
|.||.++++.+.+.|+++|+
T Consensus 4 T~eMe~~~d~~~e~l~~~~i 23 (108)
T 1kaf_A 4 TSDMEEDKDLMLKLLDKNGF 23 (108)
T ss_dssp CHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHCCC
T ss_conf 78999989999998652571
No 8
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=1.00 E-value=1 Score=13.93 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=4.2
Q ss_pred HHHHHHCCCC
Q ss_conf 9999883994
Q 027836 82 CEYLDWAQLN 91 (218)
Q Consensus 82 ~EYLe~~gl~ 91 (218)
.+|.+..|+.
T Consensus 11 ~d~Y~vLGl~ 20 (174)
T 2pf4_E 11 LQLMDLLGLE 20 (174)
T ss_dssp HHHHHTTTCC
T ss_pred CCHHHHCCCC
T ss_conf 3599995999
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=13.08 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 9999999999883994
Q 027836 76 LLTALICEYLDWAQLN 91 (218)
Q Consensus 76 Lin~LI~EYLe~~gl~ 91 (218)
-++..|.+.|+-++-.
T Consensus 231 ~iL~~la~~L~~~~~~ 246 (464)
T 3pq1_A 231 KILSVLGECLDHFGPG 246 (464)
T ss_dssp HHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 9999999999843899
No 10
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=1.00 E-value=1 Score=12.77 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=31.6
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3233468899999-86789999886566444465321024322234
Q 027836 164 HFESRNARRPSSS-SVAGGLPPLGRHLIGEQQGLPCLLTGKMSTIG 208 (218)
Q Consensus 164 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (218)
|+..+|.+ |+.. ...|+....+.||..|.-.+-|...+|-+-+|
T Consensus 39 N~~kkh~k-p~~~~~~~Ggi~~~E~PIh~SNV~lv~p~~~k~trvg 83 (102)
T 3r8s_U 39 NLVKKHQK-PVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVG 83 (102)
T ss_dssp SEEEEEEC-CCSSSSCSCEEEEEECCEEGGGEEEEETTTTEEECEE
T ss_pred EEEEECCC-CCCCCCCCCCEEEEECCCCHHHEEEECCCCCCCEEEE
T ss_conf 99975146-6755489897899887718899799838579953899
Done!