Query 027836
Match_columns 218
No_of_seqs 123 out of 204
Neff 5.1
Searched_HMMs 13730
Date Tue Mar 26 18:25:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027836.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2201-2205//hhsearch_scop/027836hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uuja_ a.221.1.1 (A:) Lissenc 49.7 3.7 0.00027 18.5 1.8 29 76-104 9-37 (76)
2 d1kafa_ d.199.1.1 (A:) DNA-bin 25.9 19 0.0013 14.5 2.5 21 4-24 3-23 (108)
3 d2pkgc1 g.92.1.1 (C:91-170) Sm 15.3 23 0.0016 14.0 0.8 18 81-98 51-68 (80)
4 d1rfza_ a.195.1.1 (A:) YutG ho 9.2 33 0.0024 13.0 0.1 18 9-26 10-27 (164)
5 d1tlqa_ a.195.1.1 (A:) Hypothe 8.9 51 0.0037 11.9 2.5 23 8-30 3-25 (161)
6 d1su3a1 a.20.1.2 (A:32-98) Fib 8.7 50 0.0036 12.0 0.8 13 79-91 1-13 (67)
7 d2b4va1 a.160.1.4 (A:289-471) 6.8 64 0.0047 11.3 2.4 90 9-104 5-107 (183)
8 d1t11a1 a.223.1.1 (A:248-376) 6.7 65 0.0048 11.3 1.5 66 7-93 15-80 (129)
9 d1whra_ d.68.7.1 (A:) R3H doma 6.4 68 0.0049 11.2 5.4 64 10-93 14-77 (124)
10 d1gkub3 e.10.1.1 (B:499-1054) 6.1 70 0.0051 11.1 0.6 24 124-147 214-237 (556)
No 1
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.69 E-value=3.7 Score=18.52 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHCCCCCC
Q ss_conf 99999999998839941000100124774
Q 027836 76 LLTALICEYLDWAQLNHTMKVYLPECNLQ 104 (218)
Q Consensus 76 Lin~LI~EYLe~~gl~~TlsVF~~Esg~p 104 (218)
-+|-=|.+||..+||.-|+.+|..|++++
T Consensus 9 eL~kaI~~Yl~~~~~~~~~~~l~~e~~l~ 37 (76)
T d1uuja_ 9 ELNRAIADYLRSNGYEEAYSVFKKEAELD 37 (76)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 99999999999888299999999987789
No 2
>d1kafa_ d.199.1.1 (A:) DNA-binding C-terminal domain of the transcription factor MotA {Bacteriophage T4 [TaxId: 10665]}
Probab=25.86 E-value=19 Score=14.48 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCH
Q ss_conf 679899999999999997151
Q 027836 4 YTREMMDLKTLVTRTLEKKGV 24 (218)
Q Consensus 4 ~t~e~~ELkd~V~~tLE~~Gv 24 (218)
-|-||.+|.+.+...|+++|+
T Consensus 3 iT~eM~~l~d~v~~ll~~n~i 23 (108)
T d1kafa_ 3 ITSDMEEDKDLMLKLLDKNGF 23 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHCCE
T ss_conf 568899999999997652564
No 3
>d2pkgc1 g.92.1.1 (C:91-170) Small t antigen, ST-AG {Simian virus 40 [TaxId: 10633]}
Probab=15.31 E-value=23 Score=13.98 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=14.7
Q ss_pred HHHHHHHCCCCCCCCHHH
Q ss_conf 999998839941000100
Q 027836 81 ICEYLDWAQLNHTMKVYL 98 (218)
Q Consensus 81 I~EYLe~~gl~~TlsVF~ 98 (218)
+.=|.+|+|++.|..||.
T Consensus 51 y~Cy~~WFG~~~t~~~f~ 68 (80)
T d2pkgc1 51 FDCFRMWFGLDLCEGTLL 68 (80)
T ss_dssp HHHHHHHHTCCSSHHHHH
T ss_pred HHHHHHHHCCCCHHHHHH
T ss_conf 998999928985189999
No 4
>d1rfza_ a.195.1.1 (A:) YutG homologue {Bacillus stearothermophilus [TaxId: 1422]}
Probab=9.24 E-value=33 Score=13.02 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHCHHH
Q ss_conf 999999999999715199
Q 027836 9 MDLKTLVTRTLEKKGVLA 26 (218)
Q Consensus 9 ~ELkd~V~~tLE~~GvL~ 26 (218)
.++.+..++.|+++||--
T Consensus 10 ~~l~~~~~~~L~erGVt~ 27 (164)
T d1rfza_ 10 NNLEQTARRWLEERGVTV 27 (164)
T ss_dssp TSCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHCCCCH
T ss_conf 999999999999869889
No 5
>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus subtilis [TaxId: 1423]}
Probab=8.87 E-value=51 Score=11.91 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 99999999999997151999999
Q 027836 8 MMDLKTLVTRTLEKKGVLAKIRA 30 (218)
Q Consensus 8 ~~ELkd~V~~tLE~~GvL~kIRA 30 (218)
+.|+.+..++.|+++||--+==|
T Consensus 3 ~~~~~~~~~~~L~erGVt~~dIa 25 (161)
T d1tlqa_ 3 MNEMVDITKDMLNKRGVMIEDIA 25 (161)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 87899999999998698899999
No 6
>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.69 E-value=50 Score=11.98 Aligned_cols=13 Identities=23% Similarity=0.174 Sum_probs=9.7
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999883994
Q 027836 79 ALICEYLDWAQLN 91 (218)
Q Consensus 79 ~LI~EYLe~~gl~ 91 (218)
+||.+||+-|||-
T Consensus 1 ~l~~~YL~~fgyl 13 (67)
T d1su3a1 1 DLVQKYLEKYYNL 13 (67)
T ss_dssp CHHHHHHHHHSCC
T ss_pred CHHHHHHHHHCCC
T ss_conf 9899999981899
No 7
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]}
Probab=6.80 E-value=64 Score=11.34 Aligned_cols=90 Identities=11% Similarity=-0.120 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCC------CCCCCCCCCCHHHHH
Q ss_conf 999999999999715199999999-----999999965445443104899965447676------210124789026899
Q 027836 9 MDLKTLVTRTLEKKGVLAKIRAEL-----RASVFEAIEEEDRVIEKDEGLPPALLGSCN------DRAKQLHASPSGRLL 77 (218)
Q Consensus 9 ~ELkd~V~~tLE~~GvL~kIRAeL-----RA~Vf~aLee~~~~~~k~~~~~p~l~~~~N------~~~k~~~~s~eg~Li 77 (218)
..|--.|+.....+|+-+..+..| --=|+.-|+.... ++.|....-.. ........+.+..-+
T Consensus 5 R~l~~~vK~Wak~~~i~~~~~G~lsSYal~lmvi~fLQ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl 78 (183)
T d2b4va1 5 RHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQ------VLWVDPWSLPHPAHLPRYPDFSPLYDCDPTEL 78 (183)
T ss_dssp HHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTS------SCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHH
T ss_pred EEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCC------CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 229999999999869997567882299999999999984488------89898788513202344445555467887779
Q ss_pred HHHHHHHHHHCC--CCCCCCHHHCCCCCC
Q ss_conf 999999998839--941000100124774
Q 027836 78 TALICEYLDWAQ--LNHTMKVYLPECNLQ 104 (218)
Q Consensus 78 n~LI~EYLe~~g--l~~TlsVF~~Esg~p 104 (218)
.+|+.+||+||+ ++|.-.|.....|..
T Consensus 79 ~~Ll~~FF~~Y~~~fd~~~~~Isi~~g~~ 107 (183)
T d2b4va1 79 GRLLHGFFIFYAHHFDYEREVVSLNRNRR 107 (183)
T ss_dssp HHHHHHHHHHHHHSSCTTTEEBCSSSSSC
T ss_pred HHHHHHHHHHHCCCCCHHHCEEEECCCCC
T ss_conf 99999999985002588776364104874
No 8
>d1t11a1 a.223.1.1 (A:248-376) Trigger factor, C-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=6.66 E-value=65 Score=11.30 Aligned_cols=66 Identities=15% Similarity=0.211 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 89999999999999715199999999999999965445443104899965447676210124789026899999999998
Q 027836 7 EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLHASPSGRLLTALICEYLD 86 (218)
Q Consensus 7 e~~ELkd~V~~tLE~~GvL~kIRAeLRA~Vf~aLee~~~~~~k~~~~~p~l~~~~N~~~k~~~~s~eg~Lin~LI~EYLe 86 (218)
..++||+.|+..|+. ....+.+..++..|+..|-+.... . +..+--..-+..++.+|..
T Consensus 15 tleelk~~ik~~l~~-~~~~~~~~~~~~~i~~~L~~~~~~-------------------e-lPe~lv~~e~~~~~~~~~~ 73 (129)
T d1t11a1 15 GVDALKAEVRKNMER-ELKQAIKARIKEQAIEGLVKENEI-------------------Q-VPSALIDQEINVLRQQAAQ 73 (129)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHTTTCTTBCSCCCE-------------------E-ECHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCC-------------------C-CCHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999-999999999999999999986777-------------------7-9799999999999999998
Q ss_pred HCCCCCC
Q ss_conf 8399410
Q 027836 87 WAQLNHT 93 (218)
Q Consensus 87 ~~gl~~T 93 (218)
-++....
T Consensus 74 ~~~~~~~ 80 (129)
T d1t11a1 74 RFGGNVE 80 (129)
T ss_dssp HSSCSHH
T ss_pred HHHHCCH
T ss_conf 8500410
No 9
>d1whra_ d.68.7.1 (A:) R3H domain protein KIAA1002 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.37 E-value=68 Score=11.21 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999715199999999999999965445443104899965447676210124789026899999999998839
Q 027836 10 DLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQ 89 (218)
Q Consensus 10 ELkd~V~~tLE~~GvL~kIRAeLRA~Vf~aLee~~~~~~k~~~~~p~l~~~~N~~~k~~~~s~eg~Lin~LI~EYLe~~g 89 (218)
+|..-+..+|+++.---.+-.++-..+...|.+... ..+..++-+..--.+|+++-++||
T Consensus 14 dl~~fl~~~l~~~~~dr~fil~lE~~l~~Fi~d~~~--------------------~~~~fppM~s~~R~~vH~lAe~yg 73 (124)
T d1whra_ 14 DLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNN--------------------QFKKFPQMTSYHRMLLHRVAAYFG 73 (124)
T ss_dssp CHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHCSSC--------------------CEEECCCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC--------------------CEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 378999999970947589999999999999828854--------------------523789999899999999999958
Q ss_pred CCCC
Q ss_conf 9410
Q 027836 90 LNHT 93 (218)
Q Consensus 90 l~~T 93 (218)
+.+-
T Consensus 74 L~s~ 77 (124)
T d1whra_ 74 MDHN 77 (124)
T ss_dssp CCEE
T ss_pred CCCC
T ss_conf 8651
No 10
>d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.08 E-value=70 Score=11.12 Aligned_cols=24 Identities=8% Similarity=0.094 Sum_probs=16.6
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 999999851899999875004761
Q 027836 124 NKNGDSAPLLLDVLEGFLKFENSS 147 (218)
Q Consensus 124 n~~~~~~PLL~~Li~~~lk~e~~~ 147 (218)
+.....+|.|-=++++....++-.
T Consensus 214 S~GRVQtPtL~lVv~Re~ei~~~~ 237 (556)
T d1gkub3 214 SAGRAQTLVLGWIIDRFQESRERR 237 (556)
T ss_dssp CCCTTHHHHHHHHHHHHTGGGSEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 533002405154463787653011
Done!