BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027837
(218 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22152|YAB1_ARATH Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1
Length = 229
Score = 287 bits (734), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 152/219 (69%), Positives = 176/219 (80%), Gaps = 8/219 (3%)
Query: 7 AALSPDHLSSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLP 66
A SPDH S S+ LCYV C FC T+LAV+VP TSLFKTVTVRCG CTNLLSVNMR +LP
Sbjct: 12 AVCSPDHFSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLP 71
Query: 67 AANQLHLG---HPFFTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQ--EIPKS 121
A+NQL L H +F PQ++LEE+R+ P+NM M+ + +P + HQ EIPK+
Sbjct: 72 ASNQLQLQLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKA 131
Query: 122 PVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMP 181
P VNRPPEKRQRVPSAYNRFIK+EIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL+P
Sbjct: 132 PPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVP 191
Query: 182 SDQPVKKTSVRQQQEGEDAMI-KDGFFAP-AANVGVTPY 218
+QPVKKT++ QQEGED M+ K+GF+AP AANVGVTPY
Sbjct: 192 DNQPVKKTNM-PQQEGEDNMVMKEGFYAPAAANVGVTPY 229
>sp|Q9XFB1|YAB3_ARATH Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1
Length = 240
Score = 258 bits (658), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 149/229 (65%), Positives = 171/229 (74%), Gaps = 23/229 (10%)
Query: 8 ALSPDHLSSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSV--NMRGLLL 65
A PDH SS++QLCYVHC+FCDTVLAVSVP +SLFKTVTVRCGHC+NLLSV +MR LLL
Sbjct: 13 AFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLL 72
Query: 66 PAANQLHLGHPFFTPQ------NLLEEIR----NVPANMLM---INPPNPADQSVMPVR- 111
P+ + L GH F P NLLEE+R N+ NM+M + +P + VM R
Sbjct: 73 PSVSNL--GHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRN 130
Query: 112 --VVDH-QEIPKSPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN 168
VDH QE+P+ P NRPPEKRQRVPSAYNRFIK+EIQRIKAGNPDISHREAFSAAAKN
Sbjct: 131 GRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKN 190
Query: 169 WAHFPHIHFGLMPSDQPVKKTSVRQQQEGEDAMI-KDGFFAPAANVGVT 216
WAHFPHIHFGLM P KK +VR QQEGED M+ ++GF+ AANVGV
Sbjct: 191 WAHFPHIHFGLMADHPPTKKANVR-QQEGEDGMMGREGFYGSAANVGVA 238
>sp|Q0JBF0|YAB5_ORYSJ Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1
Length = 266
Score = 238 bits (607), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/267 (52%), Positives = 161/267 (60%), Gaps = 50/267 (18%)
Query: 1 MSSSTPAALSPDHLS-----------SSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRC 49
M SS P S DHLS EQLCYVHC FCDT+LAV VPC+SLFKTVTVRC
Sbjct: 1 MMSSAPETFSLDHLSQHQQQQPPPLAEQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRC 60
Query: 50 GHCTNLLSVNMRGLLLPAA----NQLHLGHPFFTP---QNLLEEI--RNVPANMLMI--- 97
GHC NLLSVN+RGLLLPAA NQL G +P LL+E+ PA+++
Sbjct: 61 GHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQAS 120
Query: 98 ---------------NPPNPADQSVMPVRVVDHQEIPK-SPVVNRPPEKRQRVPSAYNRF 141
N P + S + PK +P NR EKRQRVPSAYNRF
Sbjct: 121 PNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRF 180
Query: 142 IKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPSDQPVKKTSVRQQQ-EGEDA 200
IKDEIQRIKA NPDI+HREAFSAAAKNWAHFPHIHFGLMP DQ +KKT ++ Q GE
Sbjct: 181 IKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMP-DQGLKKTGIQSQDGAGECM 239
Query: 201 MIKDGFF---------APAANVGVTPY 218
+ KDG + A+++GVTP+
Sbjct: 240 LFKDGLYAAAAAAAAATAASSMGVTPF 266
>sp|Q01JG2|YAB5_ORYSI Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2
Length = 266
Score = 238 bits (607), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/267 (52%), Positives = 161/267 (60%), Gaps = 50/267 (18%)
Query: 1 MSSSTPAALSPDHLS-----------SSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRC 49
M SS P S DHLS EQLCYVHC FCDT+LAV VPC+SLFKTVTVRC
Sbjct: 1 MMSSAPETFSLDHLSQHQQQQPPPLAEQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRC 60
Query: 50 GHCTNLLSVNMRGLLLPAA----NQLHLGHPFFTP---QNLLEEI--RNVPANMLMI--- 97
GHC NLLSVN+RGLLLPAA NQL G +P LL+E+ PA+++
Sbjct: 61 GHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQAS 120
Query: 98 ---------------NPPNPADQSVMPVRVVDHQEIPK-SPVVNRPPEKRQRVPSAYNRF 141
N P + S + PK +P NR EKRQRVPSAYNRF
Sbjct: 121 PNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRF 180
Query: 142 IKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPSDQPVKKTSVRQQQ-EGEDA 200
IKDEIQRIKA NPDI+HREAFSAAAKNWAHFPHIHFGLMP DQ +KKT ++ Q GE
Sbjct: 181 IKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMP-DQGLKKTGIQSQDGAGECM 239
Query: 201 MIKDGFF---------APAANVGVTPY 218
+ KDG + A+++GVTP+
Sbjct: 240 LFKDGLYAAAAAAAAATAASSMGVTPF 266
>sp|Q6H668|YAB4_ORYSJ Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1
Length = 256
Score = 225 bits (574), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/246 (56%), Positives = 163/246 (66%), Gaps = 42/246 (17%)
Query: 12 DHLSS---SEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAA 68
DHL++ +EQLCYVHC CDT+LAV VPC+SLFKTVTVRCGHC NLLSVN+RGLLLPA
Sbjct: 14 DHLAAPSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAP 73
Query: 69 -----NQLHLGHPFFTP---QNLLEEIRNVPANMLMINPPN------------------P 102
NQLH G +P LL+E+ ++LM + P
Sbjct: 74 APAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAP 133
Query: 103 ADQSVMPVRVVDHQ-EIPKSP--VVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHR 159
A Q + P + V + E+PK+ NRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHR
Sbjct: 134 AMQ-MPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHR 192
Query: 160 EAFSAAAKNWAHFPHIHFGLMPSDQPVKKTSVRQQQEGEDAMIKDGFF-------APAAN 212
EAFSAAAKNWAHFPHIHFGLMP DQ KKT + Q ED ++KD + A AAN
Sbjct: 193 EAFSAAAKNWAHFPHIHFGLMP-DQGFKKT-FKPQDGSEDILLKDSLYAAAAAAAAAAAN 250
Query: 213 VGVTPY 218
+GVTP+
Sbjct: 251 MGVTPF 256
>sp|A2X7Q3|YAB4_ORYSI Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1
Length = 256
Score = 225 bits (574), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/246 (56%), Positives = 163/246 (66%), Gaps = 42/246 (17%)
Query: 12 DHLSS---SEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAA 68
DHL++ +EQLCYVHC CDT+LAV VPC+SLFKTVTVRCGHC NLLSVN+RGLLLPA
Sbjct: 14 DHLAAPSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAP 73
Query: 69 -----NQLHLGHPFFTP---QNLLEEIRNVPANMLMINPPN------------------P 102
NQLH G +P LL+E+ ++LM + P
Sbjct: 74 APAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAP 133
Query: 103 ADQSVMPVRVVDHQ-EIPKSP--VVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHR 159
A Q + P + V + E+PK+ NRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHR
Sbjct: 134 AMQ-MPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHR 192
Query: 160 EAFSAAAKNWAHFPHIHFGLMPSDQPVKKTSVRQQQEGEDAMIKDGFF-------APAAN 212
EAFSAAAKNWAHFPHIHFGLMP DQ KKT + Q ED ++KD + A AAN
Sbjct: 193 EAFSAAAKNWAHFPHIHFGLMP-DQGFKKT-FKPQDGSEDILLKDSLYAAAAAAAAAAAN 250
Query: 213 VGVTPY 218
+GVTP+
Sbjct: 251 MGVTPF 256
>sp|Q8GW46|YAB5_ARATH Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1
Length = 164
Score = 184 bits (466), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 96/169 (56%), Positives = 114/169 (67%), Gaps = 17/169 (10%)
Query: 12 DHLSSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQL 71
+ + ++EQLCY+ C FC+ +LAV+VPC+SLF VTVRCGHCTNL SVNM AA
Sbjct: 3 NSVMATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNM------AAALQ 56
Query: 72 HLGHPFFTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVNRPPEKR 131
L P F N VP + + +P R+ + I + +VNRPPEKR
Sbjct: 57 SLSRPNFQATNYA-----VPEY-----GSSSRSHTKIPSRI-STRTITEQRIVNRPPEKR 105
Query: 132 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM 180
QRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGLM
Sbjct: 106 QRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 154
>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1
Length = 207
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/195 (48%), Positives = 118/195 (60%), Gaps = 33/195 (16%)
Query: 14 LSSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLL--------- 64
++ +EQ+CYVHC FC+T+LAVSVP S+ VTVRCGHCTNLLSVN+RGL+
Sbjct: 5 IAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDH 64
Query: 65 ---------LPAANQLHLGHP--FFTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVV 113
L + G+P F+ + ++R PA M++ Q +
Sbjct: 65 HHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHA- 123
Query: 114 DHQEIPKSPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 173
RPPEKRQRVPSAYNRFIK+EI+RIKA NPDISHREAFS AAKNWAH+P
Sbjct: 124 ------------RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYP 171
Query: 174 HIHFGLMPSDQPVKK 188
+IHFGL P + KK
Sbjct: 172 NIHFGLSPGHEGGKK 186
>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2
PE=2 SV=1
Length = 184
Score = 172 bits (435), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/193 (50%), Positives = 124/193 (64%), Gaps = 15/193 (7%)
Query: 16 SSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMR-GLLLPAANQLHLG 74
SSE++CYVHC+FC T+LAVSVP SLF VTVRCGHCTNLLS+N+ L +A +H
Sbjct: 6 SSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPIHQD 65
Query: 75 HPFFTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVNRPPEKRQRV 134
L+ R +++ + +S + +E P+ P + RPPEKRQRV
Sbjct: 66 ---------LQPHRQHTTSLVTRKDCASSSRSTNNLSENIDREAPRMPPI-RPPEKRQRV 115
Query: 135 PSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPSDQPVKKTSVRQQ 194
PSAYNRFIK+EIQRIKA NP+ISHREAFS AAKNWAHFPHIHFGL D K + Q
Sbjct: 116 PSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGL-KLDGNKKGKQLDQS 174
Query: 195 QEGEDAMIKDGFF 207
G+ + +G++
Sbjct: 175 VAGQKS---NGYY 184
>sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1
Length = 186
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/164 (54%), Positives = 107/164 (65%), Gaps = 14/164 (8%)
Query: 18 EQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLL--LPAANQLHLGH 75
E +CYVHC FC+T+ AVSVP S+ VTVRCGHCT+LLSVN+RGL+ LPA + L
Sbjct: 10 EHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQ--- 66
Query: 76 PFFTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVNRPPEKRQRVP 135
NL + N + + M D + + + RPPEKRQRVP
Sbjct: 67 -----DNLKMHNMSFRENYSEYGSSSRYGRVPMMFSKNDTEHM----LHVRPPEKRQRVP 117
Query: 136 SAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 179
SAYNRFIK+EI+RIKA NPDISHREAFS AAKNWAHFP+IHFGL
Sbjct: 118 SAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 161
>sp|Q8L556|YAB3_ORYSJ Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1
Length = 313
Score = 151 bits (381), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/105 (71%), Positives = 86/105 (81%), Gaps = 7/105 (6%)
Query: 121 SPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM 180
+ V+NRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM
Sbjct: 209 TAVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM 268
Query: 181 PSDQPVKKTSVR-QQQEGEDAMIKDGFF------APAANVGVTPY 218
P Q +KKTS+ Q + +D ++K+G + A AAN+GV PY
Sbjct: 269 PDHQGLKKTSLLPQDHQRKDGLLKEGLYAAAAAAAAAANMGVAPY 313
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/51 (78%), Positives = 46/51 (90%)
Query: 15 SSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLL 65
S EQLCYVHC +CDTVL VSVP +SLF+TVTVRCGHC++LL+VNMRGLLL
Sbjct: 55 SEQEQLCYVHCHYCDTVLVVSVPSSSLFETVTVRCGHCSSLLTVNMRGLLL 105
>sp|Q7XIM7|YAB1_ORYSJ Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1
Length = 169
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 104/171 (60%), Gaps = 18/171 (10%)
Query: 16 SSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGH 75
+SE +CYV+C +C+T+L V+VP + VTVRCGHCT +LS+++ H
Sbjct: 6 TSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPF-----------H 54
Query: 76 PFFTPQNLLEEIRNVPANMLM---INPPNPADQSVMPVRVVDHQEIPKSPVVNRPPEKRQ 132
T Q+ + R N I N + M Q++ SP+ RPPEKRQ
Sbjct: 55 QARTVQDHQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQV--SPI--RPPEKRQ 110
Query: 133 RVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPSD 183
RVPSAYNRFIK+EIQRIK NP+ISHREAFSAAAKNWAH P +HFGL +D
Sbjct: 111 RVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLSVAD 161
>sp|Q9LDT3|YAB4_ARATH Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2
Length = 231
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 103/170 (60%), Gaps = 5/170 (2%)
Query: 19 QLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVN-MRGLLLPAANQLHLGHPF 77
Q+C+V C FC T+L VSVP TSL VTVRCGHCT+LLSVN M+ +P L H
Sbjct: 20 QICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSHLD 79
Query: 78 FTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQEIPKS---PVVNRPPEKRQRV 134
T + + V +N + + V D+++ S VVN+PPEKRQR
Sbjct: 80 ETGKEEVAATDGVEEEAWKVNQEKENSPTTL-VSSSDNEDEDVSRVYQVVNKPPEKRQRA 138
Query: 135 PSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPSDQ 184
PSAYN FIK+EI+R+KA NP ++H+EAFS AAKNWAHFP H SDQ
Sbjct: 139 PSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAHNKRAASDQ 188
>sp|Q76EJ0|YABDL_ORYSJ Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1
SV=1
Length = 194
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 101/160 (63%), Gaps = 18/160 (11%)
Query: 12 DHLSSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRG-LLLPAANQ 70
D +S SE LCYV CT+C+TVLAV VPC L TVTV+CGHC NL ++ R ++ P +
Sbjct: 2 DLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSPT 61
Query: 71 LHLGHPFFTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVNRPPEK 130
H PF P + RN P + +++P ++ P++P V +PPEK
Sbjct: 62 DHPLGPFQGP--CTDCRRNQP--LPLVSP-------------TSNEGSPRAPFVVKPPEK 104
Query: 131 RQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWA 170
+ R+PSAYNRF+++EIQRIKA PDI HREAFS AAKNWA
Sbjct: 105 KHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144
>sp|Q8L925|CRC_ARATH Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2
Length = 181
Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 90/156 (57%), Gaps = 17/156 (10%)
Query: 17 SEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGHP 76
+E L YV C+ C+T+LAV +P + TVTV+CGHC N+ L Q H+
Sbjct: 18 AEHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCG-----NLSFLTTTPPLQGHV--- 69
Query: 77 FFTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVNRPPEKRQRVPS 136
+L ++++ + + + S D P P V +PPEK+QR+PS
Sbjct: 70 -----SLTLQMQSFGGS----DYKKGSSSSSSSSTSSDQPPSPSPPFVVKPPEKKQRLPS 120
Query: 137 AYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 172
AYNRF++DEIQRIK+ NP+I HREAFSAAAKNWA +
Sbjct: 121 AYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKY 156
>sp|A2PZN8|YAB7_ORYSJ Protein YABBY 7 OS=Oryza sativa subsp. japonica GN=YAB7 PE=2 SV=1
Length = 169
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 94/160 (58%), Gaps = 13/160 (8%)
Query: 18 EQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLS-VNMRGLLLPAANQLHLGHP 76
E+L V C+FC TVL VSVPC+S+ + V V+CGHC+ +LS VN+ + A+ +L
Sbjct: 14 ERLGCVQCSFCATVLLVSVPCSSVLRVVAVQCGHCSGILSAVNLPPSPVSASIEL----- 68
Query: 77 FFTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVNRPPEKRQRVPS 136
TPQ L + P + + D D + V N+PP ++QR PS
Sbjct: 69 --TPQEL--DAGPPPGEY---SDESSGDDREGRDAEDDAPAPAAAAVANKPPGRKQRTPS 121
Query: 137 AYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIH 176
AYN F+K+EI+RIK+ P+I+H++AFS AAKNWAH P I
Sbjct: 122 AYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRIQ 161
>sp|Q839D5|ECFA1_ENTFA Energy-coupling factor transporter ATP-binding protein EcfA 1
OS=Enterococcus faecalis (strain ATCC 700802 / V583)
GN=ecfA1 PE=3 SV=1
Length = 279
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 50 GHCTNLLSVNMRGLLLPAANQLHLGHPFFTPQNLLEEIRNVPANMLMINPPNPADQSVMP 109
G + L+ + GLLLPAA + +G N+ + R V M+ NP N S +
Sbjct: 43 GSGKSTLAKTINGLLLPAAGTIKVGGKELNEANVWDIRRMV--GMVFQNPDNQFVGSTVE 100
Query: 110 VRV---VDHQEIPKSPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAG 152
V +++Q IP+ +V R + +RV F K E R+ G
Sbjct: 101 DDVAFGLENQGIPRDEMVERVHDALERVRML--DFAKREPARLSGG 144
>sp|Q03IS1|EFG_STRTD Elongation factor G OS=Streptococcus thermophilus (strain ATCC
BAA-491 / LMD-9) GN=fusA PE=3 SV=1
Length = 693
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 91 PANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVNRPPEKRQRVPSAY---------NRF 141
P LM+ P ADQ M + + E + V PE + V S +R
Sbjct: 405 PVIQLMVEPKTKADQDKMAIGLQKLAEEDPTFRVETNPETGETVISGMGELHLDVLVDRL 464
Query: 142 IKDEIQRIKAGNPDISHREAFSAAAKNWAHF 172
++ G P +S+RE F AA + F
Sbjct: 465 KREHKVEANVGAPQVSYRETFRAATQARGFF 495
>sp|Q5M2M6|EFG_STRT2 Elongation factor G OS=Streptococcus thermophilus (strain ATCC
BAA-250 / LMG 18311) GN=fusA PE=3 SV=1
Length = 693
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 91 PANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVNRPPEKRQRVPSAY---------NRF 141
P LM+ P ADQ M + + E + V PE + V S +R
Sbjct: 405 PVIQLMVEPKTKADQDKMAIGLQKLAEEDPTFRVETNPETGETVISGMGELHLDVLVDRL 464
Query: 142 IKDEIQRIKAGNPDISHREAFSAAAKNWAHF 172
++ G P +S+RE F AA + F
Sbjct: 465 KREHKVEANVGAPQVSYRETFRAATQARGFF 495
>sp|Q5LY21|EFG_STRT1 Elongation factor G OS=Streptococcus thermophilus (strain CNRZ
1066) GN=fusA PE=3 SV=1
Length = 693
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 91 PANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVNRPPEKRQRVPSAY---------NRF 141
P LM+ P ADQ M + + E + V PE + V S +R
Sbjct: 405 PVIQLMVEPKTKADQDKMAIGLQKLAEEDPTFRVETNPETGETVISGMGELHLDVLVDRL 464
Query: 142 IKDEIQRIKAGNPDISHREAFSAAAKNWAHF 172
++ G P +S+RE F AA + F
Sbjct: 465 KREHKVEANVGAPQVSYRETFRAATQARGFF 495
>sp|Q8RDM3|FMT_FUSNN Methionyl-tRNA formyltransferase OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=fmt PE=3 SV=2
Length = 310
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 68 ANQLHLGHPF-FTPQNLLEEIRNVPANMLMINPPNPADQSVMPVRVVDHQEIPKSPVVN 125
AN L + P F L+EEIRN+ A+++++ A ++P V+D IPK V+N
Sbjct: 53 ANNLKIYQPENFKDNTLIEEIRNMQADLIVV----VAYGKILPKEVID---IPKYGVIN 104
>sp|P41882|YPT4_CAEEL Ankyrin repeat-containing protein F37A4.4 OS=Caenorhabditis elegans
GN=F37A4.4 PE=4 SV=2
Length = 1163
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 22/111 (19%)
Query: 46 TVRCGHCTNLLSVNMRGLLLPAANQ-----LHL----GHPFFTPQNLLEEIRNVPANMLM 96
+VR + TNLL RG + N+ LH+ G+ QNL+E + A+
Sbjct: 831 SVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGY-----QNLVEILIKHGADRSF 885
Query: 97 INPPNPADQSVMPVRVVDHQEIPKSPVVNRPPEKRQRVPSAYNRFIKDEIQ 147
+NP N + ++P V++QE K + E+ + + S YN++ K + +
Sbjct: 886 LNPQNKTAEQMIP---VNYQETHKEKI-----ERFKSIESIYNKYRKKKFK 928
>sp|Q9BT81|SOX7_HUMAN Transcription factor SOX-7 OS=Homo sapiens GN=SOX7 PE=1 SV=1
Length = 388
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 122 PVVNRPP-----EKRQRVP-SAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNW 169
P V RPP E R R P +A+ + KDE +R+ NPD+ + E K+W
Sbjct: 30 PAVPRPPGDKGSESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSW 83
>sp|Q5AD73|SNX41_CANAL Sorting nexin-41 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=SNX41 PE=3 SV=1
Length = 681
Score = 32.0 bits (71), Expect = 3.5, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 12/50 (24%)
Query: 73 LGHPFFTPQ------NLLEE--IRNVPANMLMINPPNPADQ----SVMPV 110
L H FF P N L E + +P N+L+ NP NPADQ S++P+
Sbjct: 224 LLHKFFDPNYELCWYNALNEPPVSLIPDNLLLANPINPADQNGLYSLLPI 273
>sp|Q0II87|TFAM_BOVIN Transcription factor A, mitochondrial OS=Bos taurus GN=TFAM PE=2
SV=1
Length = 246
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 136 SAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP----HIHFGLMPSDQPVKKTSV 191
++Y RF K+++ KA NPD + E AK W P I+ +D V K +
Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELPDSEKKIYEDAYRADWQVYKEEI 114
Query: 192 RQQQE 196
+ QE
Sbjct: 115 NRIQE 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,169,995
Number of Sequences: 539616
Number of extensions: 3593200
Number of successful extensions: 8345
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 8288
Number of HSP's gapped (non-prelim): 51
length of query: 218
length of database: 191,569,459
effective HSP length: 113
effective length of query: 105
effective length of database: 130,592,851
effective search space: 13712249355
effective search space used: 13712249355
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)