Query 027837
Match_columns 218
No_of_seqs 122 out of 185
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 15:58:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04690 YABBY: YABBY protein; 100.0 1.5E-83 3.2E-88 540.2 12.8 167 11-179 1-170 (170)
2 PF09011 HMG_box_2: HMG-box do 98.2 2.7E-06 5.9E-11 61.1 4.5 45 128-172 1-46 (73)
3 cd01390 HMGB-UBF_HMG-box HMGB- 97.7 6.2E-05 1.3E-09 51.5 4.9 41 132-172 2-42 (66)
4 cd00084 HMG-box High Mobility 97.7 8.6E-05 1.9E-09 50.2 4.9 42 132-173 2-43 (66)
5 cd01388 SOX-TCF_HMG-box SOX-TC 97.7 8.5E-05 1.8E-09 53.2 4.8 41 132-172 3-43 (72)
6 PF00505 HMG_box: HMG (high mo 97.7 7.6E-05 1.7E-09 51.6 4.4 41 132-172 2-42 (69)
7 smart00398 HMG high mobility g 97.5 0.00019 4E-09 49.0 5.1 42 132-173 3-44 (70)
8 cd01389 MATA_HMG-box MATA_HMG- 97.5 0.00022 4.9E-09 51.5 5.1 42 132-173 3-44 (77)
9 PTZ00199 high mobility group p 97.4 0.00041 8.9E-09 52.8 5.5 48 126-173 18-67 (94)
10 PF06244 DUF1014: Protein of u 96.6 0.0024 5.3E-08 52.2 4.0 50 123-174 67-116 (122)
11 KOG0381 HMG box-containing pro 96.3 0.008 1.7E-07 44.4 4.9 43 130-172 22-64 (96)
12 PF11331 DUF3133: Protein of u 93.5 0.041 8.9E-07 38.5 1.4 38 22-61 6-46 (46)
13 KOG3223 Uncharacterized conser 93.2 0.053 1.1E-06 48.3 2.0 50 125-176 161-210 (221)
14 KOG4684 Uncharacterized conser 84.1 1.1 2.3E-05 41.1 3.3 16 44-59 168-183 (275)
15 TIGR02098 MJ0042_CXXC MJ0042 f 80.2 1.8 3.9E-05 27.5 2.4 35 22-58 2-37 (38)
16 PF13719 zinc_ribbon_5: zinc-r 78.9 1.6 3.4E-05 28.4 1.9 34 23-58 3-37 (37)
17 PRK14892 putative transcriptio 78.1 2.8 6E-05 33.3 3.4 42 22-66 21-62 (99)
18 PF05129 Elf1: Transcription e 72.6 1.7 3.6E-05 33.0 0.8 42 22-63 22-63 (81)
19 TIGR01562 FdhE formate dehydro 69.3 2.8 6E-05 38.9 1.7 28 17-54 205-232 (305)
20 PRK03954 ribonuclease P protei 67.4 3 6.5E-05 34.2 1.3 32 25-56 67-103 (121)
21 PF13717 zinc_ribbon_4: zinc-r 66.4 7.9 0.00017 25.2 2.9 30 23-56 3-35 (36)
22 PF10122 Mu-like_Com: Mu-like 66.2 3.2 7E-05 29.8 1.1 32 23-58 5-36 (51)
23 PF04032 Rpr2: RNAse P Rpr2/Rp 64.5 2.6 5.7E-05 30.5 0.4 31 24-54 48-85 (85)
24 KOG4684 Uncharacterized conser 64.0 3 6.4E-05 38.3 0.8 34 19-60 167-203 (275)
25 PF09788 Tmemb_55A: Transmembr 63.0 5.9 0.00013 36.5 2.5 39 18-60 153-191 (256)
26 PRK03564 formate dehydrogenase 62.6 5.9 0.00013 37.0 2.5 37 8-54 198-234 (309)
27 COG3058 FdhE Uncharacterized p 61.3 1.3 2.9E-05 41.5 -2.0 44 7-60 195-239 (308)
28 PF08073 CHDNT: CHDNT (NUC034) 52.0 24 0.00052 25.7 3.6 33 137-172 18-50 (55)
29 PF11331 DUF3133: Protein of u 48.4 12 0.00026 26.2 1.5 20 18-37 27-46 (46)
30 PF04216 FdhE: Protein involve 45.0 7 0.00015 34.9 -0.1 33 20-62 195-227 (290)
31 PF06382 DUF1074: Protein of u 44.7 30 0.00064 30.7 3.7 34 136-173 84-117 (183)
32 COG5648 NHP6B Chromatin-associ 43.9 39 0.00085 30.4 4.4 41 132-172 72-112 (211)
33 TIGR01053 LSD1 zinc finger dom 43.4 23 0.00049 22.8 2.1 26 23-54 2-27 (31)
34 PF12876 Cellulase-like: Sugar 38.3 45 0.00097 24.6 3.4 31 127-157 29-59 (88)
35 PF03811 Zn_Tnp_IS1: InsA N-te 35.7 26 0.00056 23.1 1.5 18 42-59 1-18 (36)
36 COG4416 Com Mu-like prophage p 35.2 10 0.00022 28.1 -0.5 14 44-57 2-15 (60)
37 PF05047 L51_S25_CI-B8: Mitoch 33.9 29 0.00064 23.2 1.7 19 139-157 2-20 (52)
38 COG4888 Uncharacterized Zn rib 30.8 38 0.00082 27.6 2.0 45 22-66 22-66 (104)
39 PF04420 CHD5: CHD5-like prote 30.7 25 0.00055 29.3 1.1 36 133-168 36-71 (161)
40 PF02892 zf-BED: BED zinc fing 30.1 27 0.00057 22.5 0.9 18 18-35 12-29 (45)
41 COG3712 FecR Fe2+-dicitrate se 29.5 46 0.001 31.4 2.7 30 142-173 33-62 (322)
42 PF10238 Eapp_C: E2F-associate 29.4 30 0.00064 29.0 1.3 17 18-34 105-121 (136)
43 KOG4715 SWI/SNF-related matrix 28.9 70 0.0015 31.1 3.8 45 126-173 63-107 (410)
44 PF04769 MAT_Alpha1: Mating-ty 28.6 1.4E+02 0.0031 26.3 5.4 47 125-175 38-84 (201)
45 PF14599 zinc_ribbon_6: Zinc-r 27.6 44 0.00096 24.4 1.8 31 18-54 26-56 (61)
46 PF05180 zf-DNL: DNL zinc fing 27.5 33 0.00072 25.6 1.1 32 24-55 6-38 (66)
47 PF01020 Ribosomal_L40e: Ribos 26.3 24 0.00053 25.5 0.2 9 48-56 38-46 (52)
48 smart00614 ZnF_BED BED zinc fi 25.9 45 0.00098 22.4 1.5 14 21-34 17-30 (50)
49 TIGR02147 Fsuc_second hypothet 25.7 66 0.0014 29.3 2.9 25 136-160 8-32 (271)
50 COG5509 Uncharacterized small 25.4 61 0.0013 24.4 2.2 13 141-153 36-48 (65)
51 KOG4520 Predicted coiled-coil 24.2 81 0.0018 28.7 3.1 30 139-168 62-107 (238)
52 PF00527 E7: E7 protein, Early 24.0 32 0.00069 26.6 0.5 31 23-53 53-92 (92)
53 KOG4253 Tryptophan-rich basic 24.0 88 0.0019 27.5 3.2 35 137-171 44-78 (175)
54 PF05164 ZapA: Cell division p 23.9 1.2E+02 0.0025 21.8 3.4 32 140-171 28-59 (89)
55 PRK12336 translation initiatio 23.9 93 0.002 27.0 3.4 37 22-64 98-137 (201)
56 COG4357 Zinc finger domain con 23.8 22 0.00048 28.9 -0.4 43 18-60 22-76 (105)
57 PF14722 KRAP_IP3R_bind: Ki-ra 23.7 80 0.0017 27.5 2.9 42 138-180 71-112 (160)
58 PF02723 NS3_envE: Non-structu 23.6 14 0.00031 28.7 -1.5 15 19-33 38-52 (82)
59 PF13408 Zn_ribbon_recom: Reco 23.4 38 0.00083 22.4 0.8 14 46-59 5-18 (58)
60 PF01667 Ribosomal_S27e: Ribos 22.4 55 0.0012 23.7 1.4 11 23-33 27-37 (55)
61 PRK09774 fec operon regulator 22.0 67 0.0015 29.1 2.2 29 143-173 33-61 (319)
62 KOG0493 Transcription factor E 21.8 42 0.00091 31.8 0.9 33 129-166 246-281 (342)
63 TIGR00311 aIF-2beta translatio 21.0 1.1E+02 0.0023 25.4 3.0 33 21-59 96-131 (133)
64 PF09788 Tmemb_55A: Transmembr 20.4 93 0.002 28.8 2.8 17 43-59 154-170 (256)
65 PF13565 HTH_32: Homeodomain-l 20.2 2.9E+02 0.0062 19.1 4.8 30 139-168 32-61 (77)
No 1
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=100.00 E-value=1.5e-83 Score=540.24 Aligned_cols=167 Identities=66% Similarity=1.101 Sum_probs=130.4
Q ss_pred CCCCCCCCceeEeeCCCcceeEEcccCCCCCcceeeeecCCcCCcccccccccCCccccccccCCCCCCCcchHHhhhcC
Q 027837 11 PDHLSSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGHPFFTPQNLLEEIRNV 90 (218)
Q Consensus 11 ~d~l~~~E~lCYV~CnfCnTILaVsVPcssL~~~VTVRCGHCtnLLSVNmr~ll~p~~~q~~~~~~~~~~~~~~~e~~~~ 90 (218)
||+++++|||||||||||||||||||||+|||+|||||||||+|||||||++++++.+.|++++++++.+.. ++....
T Consensus 1 ~~~~~~sE~lCYVhCnFC~TiLaVsVP~ssL~~~VTVRCGHCtNLLSVNm~~~~~~~~~~~~l~~~~~~~~~--~~~~~~ 78 (170)
T PF04690_consen 1 MDLFSPSEQLCYVHCNFCNTILAVSVPCSSLLKTVTVRCGHCTNLLSVNMRALLQPLPSQDHLQHSLLPPQS--QELQFQ 78 (170)
T ss_pred CCccCCCCcEEEEEcCCcCeEEEEecchhhhhhhhceeccCccceeeeeccccccCCCcccchhcccccccc--cccccc
Confidence 677788999999999999999999999999999999999999999999999999888888776665543321 111110
Q ss_pred ccccc---cCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 027837 91 PANML---MINPPNPADQSVMPVRVVDHQEIPKSPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAK 167 (218)
Q Consensus 91 ~~~~~---~~~~~~~~~ss~~~~~~~~~~~~p~~p~v~KPPEKRQR~pSayN~fmK~ei~riK~~~P~i~hkEaFs~aAk 167 (218)
..... .+..++.+..+........+++.|+.++|+||||||||+|||||+||||||||||++||||+|||||++|||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pr~~~v~kPPEKRqR~psaYn~f~k~ei~rik~~~p~ishkeaFs~aAk 158 (170)
T PF04690_consen 79 PENFGSNSSSSSSSSSSSSSSSMSFSEEEEIPRAPPVNKPPEKRQRVPSAYNRFMKEEIQRIKAENPDISHKEAFSAAAK 158 (170)
T ss_pred ccccccccccCCCccccccccccCccccccccccccccCCccccCCCchhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 01100 111110111101011123356889988899999999999999999999999999999999999999999999
Q ss_pred hhccCCcccccc
Q 027837 168 NWAHFPHIHFGL 179 (218)
Q Consensus 168 nW~~~PhihfGL 179 (218)
||||+|||||||
T Consensus 159 nW~h~phihfgl 170 (170)
T PF04690_consen 159 NWAHFPHIHFGL 170 (170)
T ss_pred hhhhCcccccCC
Confidence 999999999998
No 2
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=98.17 E-value=2.7e-06 Score=61.07 Aligned_cols=45 Identities=33% Similarity=0.622 Sum_probs=38.3
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhccC
Q 027837 128 PEKRQRVPSAYNRFIKDEIQRIKAG-NPDISHREAFSAAAKNWAHF 172 (218)
Q Consensus 128 PEKRQR~pSayN~fmK~ei~riK~~-~P~i~hkEaFs~aAknW~~~ 172 (218)
|.|-.|.+|||+.||++.+.++|+. .+.++.+|++..++..|+..
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~~~~~e~~k~~~~~Wk~L 46 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQKQSFREVMKEISERWKSL 46 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T-SSHHHHHHHHHHHHHHS
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhc
Confidence 5666899999999999999999999 88899999999999999975
No 3
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=97.74 E-value=6.2e-05 Score=51.47 Aligned_cols=41 Identities=29% Similarity=0.479 Sum_probs=38.5
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027837 132 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 172 (218)
Q Consensus 132 QR~pSayN~fmK~ei~riK~~~P~i~hkEaFs~aAknW~~~ 172 (218)
.|-++||..|+++....+++++|+++..|....++..|+..
T Consensus 2 krp~saf~~f~~~~r~~~~~~~p~~~~~~i~~~~~~~W~~l 42 (66)
T cd01390 2 KRPLSAYFLFSQEQRPKLKKENPDASVTEVTKILGEKWKEL 42 (66)
T ss_pred CCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhC
Confidence 36789999999999999999999999999999999999975
No 4
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=97.68 E-value=8.6e-05 Score=50.17 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=39.0
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027837 132 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 173 (218)
Q Consensus 132 QR~pSayN~fmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 173 (218)
.|-+++|..|++++...+++.+|+++..|....+++.|+..+
T Consensus 2 krp~~af~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~W~~l~ 43 (66)
T cd00084 2 KRPLSAYFLFSQEHRAEVKAENPGLSVGEISKILGEMWKSLS 43 (66)
T ss_pred CCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCC
Confidence 467899999999999999999999999999999999999753
No 5
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=97.66 E-value=8.5e-05 Score=53.18 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=38.4
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027837 132 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 172 (218)
Q Consensus 132 QR~pSayN~fmK~ei~riK~~~P~i~hkEaFs~aAknW~~~ 172 (218)
.|-++||..|+++.-.+|++++|+++..|.-+.++..|+..
T Consensus 3 KrP~naf~~F~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~l 43 (72)
T cd01388 3 KRPMNAFMLFSKRHRRKVLQEYPLKENRAISKILGDRWKAL 43 (72)
T ss_pred CCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999999999999865
No 6
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=97.65 E-value=7.6e-05 Score=51.57 Aligned_cols=41 Identities=32% Similarity=0.619 Sum_probs=36.9
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027837 132 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 172 (218)
Q Consensus 132 QR~pSayN~fmK~ei~riK~~~P~i~hkEaFs~aAknW~~~ 172 (218)
.|-++||..|+++....||+++|+++..|.-+.+++.|+..
T Consensus 2 krP~~af~lf~~~~~~~~k~~~p~~~~~~i~~~~~~~W~~l 42 (69)
T PF00505_consen 2 KRPPNAFMLFCKEKRAKLKEENPDLSNKEISKILAQMWKNL 42 (69)
T ss_dssp SSS--HHHHHHHHHHHHHHHHSTTSTHHHHHHHHHHHHHCS
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcccccccchhhHHHHHhcC
Confidence 47899999999999999999999999999999999999974
No 7
>smart00398 HMG high mobility group.
Probab=97.55 E-value=0.00019 Score=49.03 Aligned_cols=42 Identities=31% Similarity=0.501 Sum_probs=39.0
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027837 132 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 173 (218)
Q Consensus 132 QR~pSayN~fmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 173 (218)
.|-+++|..|+++....+++++|+++..|....++..|+..+
T Consensus 3 krp~~~y~~f~~~~r~~~~~~~~~~~~~~i~~~~~~~W~~l~ 44 (70)
T smart00398 3 KRPMSAFMLFSQENRAKIKAENPDLSNAEISKKLGERWKLLS 44 (70)
T ss_pred CCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999999999753
No 8
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=97.50 E-value=0.00022 Score=51.49 Aligned_cols=42 Identities=19% Similarity=0.371 Sum_probs=39.4
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027837 132 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 173 (218)
Q Consensus 132 QR~pSayN~fmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 173 (218)
.|-++||-.|+++....|+++||++++.|.-+.++..|+..+
T Consensus 3 kRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~~g~~Wk~ls 44 (77)
T cd01389 3 PRPRNAFILYRQDKHAQLKTENPGLTNNEISRIIGRMWRSES 44 (77)
T ss_pred CCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCC
Confidence 578999999999999999999999999999999999999754
No 9
>PTZ00199 high mobility group protein; Provisional
Probab=97.38 E-value=0.00041 Score=52.84 Aligned_cols=48 Identities=25% Similarity=0.438 Sum_probs=41.7
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHhcCCCCC--HHHHHHHHHHhhccCC
Q 027837 126 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDIS--HREAFSAAAKNWAHFP 173 (218)
Q Consensus 126 KPPEKRQR~pSayN~fmK~ei~riK~~~P~i~--hkEaFs~aAknW~~~P 173 (218)
+.|.+-.|-+|||..|+++.-..|+++||+++ -.|.-+.++..|+..+
T Consensus 18 kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls 67 (94)
T PTZ00199 18 KDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLS 67 (94)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCC
Confidence 45666678899999999999999999999986 5788889999999764
No 10
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=96.61 E-value=0.0024 Score=52.17 Aligned_cols=50 Identities=26% Similarity=0.531 Sum_probs=44.8
Q ss_pred CCCCCCcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCCc
Q 027837 123 VVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPH 174 (218)
Q Consensus 123 ~v~KPPEKRQR~pSayN~fmK~ei~riK~~~P~i~hkEaFs~aAknW~~~Ph 174 (218)
.+-|.||||-+ -||..|--.+|.+||++||++.+-+-=-..=|.|..+|.
T Consensus 67 ~~drHPErR~K--AAy~afeE~~Lp~lK~E~PgLrlsQ~kq~l~K~w~KSPe 116 (122)
T PF06244_consen 67 PIDRHPERRMK--AAYKAFEERRLPELKEENPGLRLSQYKQMLWKEWQKSPE 116 (122)
T ss_pred CCCCCcchhHH--HHHHHHHHHHhHHHHhhCCCchHHHHHHHHHHHHhcCCC
Confidence 35789999875 599999999999999999999999888888999999874
No 11
>KOG0381 consensus HMG box-containing protein [General function prediction only]
Probab=96.34 E-value=0.008 Score=44.42 Aligned_cols=43 Identities=30% Similarity=0.442 Sum_probs=39.3
Q ss_pred ccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027837 130 KRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 172 (218)
Q Consensus 130 KRQR~pSayN~fmK~ei~riK~~~P~i~hkEaFs~aAknW~~~ 172 (218)
.-+|-+|||..|+.+.-.+||++||+++..|.=+.+..+|...
T Consensus 22 ~pkrp~sa~~~f~~~~~~~~k~~~p~~~~~~v~k~~g~~W~~l 64 (96)
T KOG0381|consen 22 APKRPLSAFFLFSSEQRSKIKAENPGLSVGEVAKALGEMWKNL 64 (96)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 4577888999999999999999999999999999999999875
No 12
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function.
Probab=93.47 E-value=0.041 Score=38.46 Aligned_cols=38 Identities=29% Similarity=0.733 Sum_probs=29.5
Q ss_pred EeeCCCcceeEEcccCCCCCcc---eeeeecCCcCCccccccc
Q 027837 22 YVHCTFCDTVLAVSVPCTSLFK---TVTVRCGHCTNLLSVNMR 61 (218)
Q Consensus 22 YV~CnfCnTILaVsVPcssL~~---~VTVRCGHCtnLLSVNmr 61 (218)
||-|.-|...|- +|-..+.. .-.+|||.|+.++++.++
T Consensus 6 Fv~C~~C~~lLq--lP~~~~~~~k~~~klrCGaCs~vl~~s~~ 46 (46)
T PF11331_consen 6 FVVCSSCFELLQ--LPAKFSLSKKNQQKLRCGACSEVLSFSLP 46 (46)
T ss_pred EeECccHHHHHc--CCCccCCCccceeEEeCCCCceeEEEecC
Confidence 788999987665 57775443 568999999999988753
No 13
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=0.053 Score=48.33 Aligned_cols=50 Identities=30% Similarity=0.532 Sum_probs=43.7
Q ss_pred CCCCcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCCccc
Q 027837 125 NRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIH 176 (218)
Q Consensus 125 ~KPPEKRQR~pSayN~fmK~ei~riK~~~P~i~hkEaFs~aAknW~~~Phih 176 (218)
-|-||||=|. ||--|=..++-|||.++|+++|-+-=-..-|.|...|-=-
T Consensus 161 drHPEkRmrA--A~~afEe~~LPrLK~e~P~lrlsQ~Kqll~Kew~KsPDNP 210 (221)
T KOG3223|consen 161 DRHPEKRMRA--AFKAFEEARLPRLKKENPGLRLSQYKQLLKKEWQKSPDNP 210 (221)
T ss_pred ccChHHHHHH--HHHHHHHhhchhhhhcCCCccHHHHHHHHHHHHhhCCCCh
Confidence 4899999885 8999999999999999999999987777788899887533
No 14
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=84.15 E-value=1.1 Score=41.10 Aligned_cols=16 Identities=38% Similarity=0.922 Sum_probs=10.7
Q ss_pred eeeeecCCcCCccccc
Q 027837 44 TVTVRCGHCTNLLSVN 59 (218)
Q Consensus 44 ~VTVRCGHCtnLLSVN 59 (218)
.+-|+||||++..--|
T Consensus 168 gcRV~CgHC~~tFLfn 183 (275)
T KOG4684|consen 168 GCRVKCGHCNETFLFN 183 (275)
T ss_pred ceEEEecCccceeehh
Confidence 3778888887765444
No 15
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=80.17 E-value=1.8 Score=27.51 Aligned_cols=35 Identities=29% Similarity=0.573 Sum_probs=24.4
Q ss_pred EeeCCCcceeEEcccCCCCCc-ceeeeecCCcCCcccc
Q 027837 22 YVHCTFCDTVLAVSVPCTSLF-KTVTVRCGHCTNLLSV 58 (218)
Q Consensus 22 YV~CnfCnTILaVsVPcssL~-~~VTVRCGHCtnLLSV 58 (218)
.+.|..|.+..-|.. +.+- +...|||++|.+.+.+
T Consensus 2 ~~~CP~C~~~~~v~~--~~~~~~~~~v~C~~C~~~~~~ 37 (38)
T TIGR02098 2 RIQCPNCKTSFRVVD--SQLGANGGKVRCGKCGHVWYA 37 (38)
T ss_pred EEECCCCCCEEEeCH--HHcCCCCCEEECCCCCCEEEe
Confidence 368999999877653 2221 3347999999987754
No 16
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=78.89 E-value=1.6 Score=28.45 Aligned_cols=34 Identities=32% Similarity=0.670 Sum_probs=25.3
Q ss_pred eeCCCcceeEEcccCCCCC-cceeeeecCCcCCcccc
Q 027837 23 VHCTFCDTVLAVSVPCTSL-FKTVTVRCGHCTNLLSV 58 (218)
Q Consensus 23 V~CnfCnTILaVsVPcssL-~~~VTVRCGHCtnLLSV 58 (218)
++|--|.|..-| |-+.| -....|||++|.+...|
T Consensus 3 i~CP~C~~~f~v--~~~~l~~~~~~vrC~~C~~~f~v 37 (37)
T PF13719_consen 3 ITCPNCQTRFRV--PDDKLPAGGRKVRCPKCGHVFRV 37 (37)
T ss_pred EECCCCCceEEc--CHHHcccCCcEEECCCCCcEeeC
Confidence 789999998865 44443 34679999999987654
No 17
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=78.09 E-value=2.8 Score=33.28 Aligned_cols=42 Identities=17% Similarity=0.458 Sum_probs=33.8
Q ss_pred EeeCCCcceeEEcccCCCCCcceeeeecCCcCCcccccccccCCc
Q 027837 22 YVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLP 66 (218)
Q Consensus 22 YV~CnfCnTILaVsVPcssL~~~VTVRCGHCtnLLSVNmr~ll~p 66 (218)
++.|.||+. ..|+||... ++..+.|..|.---.-.+..|..|
T Consensus 21 ~f~CP~Cge-~~v~v~~~k--~~~h~~C~~CG~y~~~~V~~l~ep 62 (99)
T PRK14892 21 IFECPRCGK-VSISVKIKK--NIAIITCGNCGLYTEFEVPSVYDE 62 (99)
T ss_pred EeECCCCCC-eEeeeecCC--CcceEECCCCCCccCEECCccccc
Confidence 689999995 688888888 799999999987766655555444
No 18
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=72.57 E-value=1.7 Score=33.03 Aligned_cols=42 Identities=21% Similarity=0.412 Sum_probs=26.2
Q ss_pred EeeCCCcceeEEcccCCCCCcceeeeecCCcCCccccccccc
Q 027837 22 YVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGL 63 (218)
Q Consensus 22 YV~CnfCnTILaVsVPcssL~~~VTVRCGHCtnLLSVNmr~l 63 (218)
+-.|-|||.--+|+|=.+.--.+-++.||-|.---..++..|
T Consensus 22 ~F~CPfC~~~~sV~v~idkk~~~~~~~C~~Cg~~~~~~i~~L 63 (81)
T PF05129_consen 22 VFDCPFCNHEKSVSVKIDKKEGIGILSCRVCGESFQTKINPL 63 (81)
T ss_dssp ----TTT--SS-EEEEEETTTTEEEEEESSS--EEEEE--SS
T ss_pred eEcCCcCCCCCeEEEEEEccCCEEEEEecCCCCeEEEccCcc
Confidence 347999999999999999999999999999954444444443
No 19
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=69.30 E-value=2.8 Score=38.95 Aligned_cols=28 Identities=36% Similarity=0.928 Sum_probs=23.9
Q ss_pred CCceeEeeCCCcceeEEcccCCCCCcceeeeecCCcCC
Q 027837 17 SEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTN 54 (218)
Q Consensus 17 ~E~lCYV~CnfCnTILaVsVPcssL~~~VTVRCGHCtn 54 (218)
.+-.=|.||++|.| -...|-++|.+|.|
T Consensus 205 ~~G~RyL~CslC~t----------eW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 205 ETGLRYLSCSLCAT----------EWHYVRVKCSHCEE 232 (305)
T ss_pred CCCceEEEcCCCCC----------cccccCccCCCCCC
Confidence 36677999999976 57889999999997
No 20
>PRK03954 ribonuclease P protein component 4; Validated
Probab=67.45 E-value=3 Score=34.22 Aligned_cols=32 Identities=25% Similarity=0.597 Sum_probs=24.3
Q ss_pred CCCcceeEEcccCCCC-Cc----ceeeeecCCcCCcc
Q 027837 25 CTFCDTVLAVSVPCTS-LF----KTVTVRCGHCTNLL 56 (218)
Q Consensus 25 CnfCnTILaVsVPcss-L~----~~VTVRCGHCtnLL 56 (218)
|-.|+|.|.-||-|.- +- .-|.|+|..|...-
T Consensus 67 CK~C~t~LiPG~n~~vRi~~~~~~~vvitCl~CG~~k 103 (121)
T PRK03954 67 CKRCHSFLVPGVNARVRLRQKRMPHVVITCLECGHIM 103 (121)
T ss_pred hhcCCCeeecCCceEEEEecCCcceEEEECccCCCEE
Confidence 8899999998876651 22 24899999998753
No 21
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=66.40 E-value=7.9 Score=25.18 Aligned_cols=30 Identities=27% Similarity=0.770 Sum_probs=23.3
Q ss_pred eeCCCcceeEEcc---cCCCCCcceeeeecCCcCCcc
Q 027837 23 VHCTFCDTVLAVS---VPCTSLFKTVTVRCGHCTNLL 56 (218)
Q Consensus 23 V~CnfCnTILaVs---VPcssL~~~VTVRCGHCtnLL 56 (218)
+.|.-|.+...|. || =+.+.|||+.|.+++
T Consensus 3 i~Cp~C~~~y~i~d~~ip----~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIP----PKGRKVRCSKCGHVF 35 (36)
T ss_pred EECCCCCCEEeCCHHHCC----CCCcEEECCCCCCEe
Confidence 6899999988765 44 245799999998764
No 22
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=66.19 E-value=3.2 Score=29.82 Aligned_cols=32 Identities=22% Similarity=0.628 Sum_probs=23.6
Q ss_pred eeCCCcceeEEcccCCCCCcceeeeecCCcCCcccc
Q 027837 23 VHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSV 58 (218)
Q Consensus 23 V~CnfCnTILaVsVPcssL~~~VTVRCGHCtnLLSV 58 (218)
+||..||..||-+- -+..+.++|..|..+-.|
T Consensus 5 iRC~~CnklLa~~g----~~~~leIKCpRC~tiN~~ 36 (51)
T PF10122_consen 5 IRCGHCNKLLAKAG----EVIELEIKCPRCKTINHV 36 (51)
T ss_pred eeccchhHHHhhhc----CccEEEEECCCCCccceE
Confidence 68888888888642 344788888888876655
No 23
>PF04032 Rpr2: RNAse P Rpr2/Rpp21/SNM1 subunit domain; InterPro: IPR007175 This family contains a ribonuclease P subunit of human and yeast. Other members of the family include the probable archaeal homologues. This subunit possibly binds the precursor tRNA [].; PDB: 2K3R_A 2KI7_B 2ZAE_B 1X0T_A.
Probab=64.47 E-value=2.6 Score=30.46 Aligned_cols=31 Identities=23% Similarity=0.548 Sum_probs=19.5
Q ss_pred eCCCcceeEEcccCCCC-------CcceeeeecCCcCC
Q 027837 24 HCTFCDTVLAVSVPCTS-------LFKTVTVRCGHCTN 54 (218)
Q Consensus 24 ~CnfCnTILaVsVPcss-------L~~~VTVRCGHCtn 54 (218)
-|.-|.++|.-|+-|+- .-+.|.++|..|.+
T Consensus 48 ~Ck~C~~~liPG~~~~vri~~~~~~~~~l~~~C~~C~~ 85 (85)
T PF04032_consen 48 ICKKCGSLLIPGVNCSVRIRKKKKKKNFLVYTCLNCGH 85 (85)
T ss_dssp B-TTT--B--CTTTEEEEEE---SSS-EEEEEETTTTE
T ss_pred cccCCCCEEeCCCccEEEEEecCCCCCEEEEEccccCC
Confidence 58999999998887762 34688999999963
No 24
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=64.05 E-value=3 Score=38.28 Aligned_cols=34 Identities=41% Similarity=0.891 Sum_probs=27.6
Q ss_pred ceeEeeCCCcceeEEcccCCCCCcceee---eecCCcCCcccccc
Q 027837 19 QLCYVHCTFCDTVLAVSVPCTSLFKTVT---VRCGHCTNLLSVNM 60 (218)
Q Consensus 19 ~lCYV~CnfCnTILaVsVPcssL~~~VT---VRCGHCtnLLSVNm 60 (218)
--|-|-|+-|+.+. ||++.| -||-||-..+||--
T Consensus 167 ~gcRV~CgHC~~tF--------Lfnt~tnaLArCPHCrKvSsvGs 203 (275)
T KOG4684|consen 167 TGCRVKCGHCNETF--------LFNTLTNALARCPHCRKVSSVGS 203 (275)
T ss_pred cceEEEecCcccee--------ehhhHHHHHhcCCcccchhhhhh
Confidence 35999999999887 455555 69999999999854
No 25
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=63.00 E-value=5.9 Score=36.46 Aligned_cols=39 Identities=26% Similarity=0.556 Sum_probs=30.6
Q ss_pred CceeEeeCCCcceeEEcccCCCCCcceeeeecCCcCCcccccc
Q 027837 18 EQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNM 60 (218)
Q Consensus 18 E~lCYV~CnfCnTILaVsVPcssL~~~VTVRCGHCtnLLSVNm 60 (218)
..-|=|.|+.|+...+...+-++- -.||-||-.++||.-
T Consensus 153 p~~~rv~CghC~~~Fl~~~~~~~t----lARCPHCrKvSSVG~ 191 (256)
T PF09788_consen 153 PGSCRVICGHCSNTFLFNTLTSNT----LARCPHCRKVSSVGP 191 (256)
T ss_pred CCceeEECCCCCCcEeccCCCCCc----cccCCCCceeccccc
Confidence 467889999999888777665332 279999999999964
No 26
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=62.64 E-value=5.9 Score=36.97 Aligned_cols=37 Identities=27% Similarity=0.780 Sum_probs=27.3
Q ss_pred ccCCCCCCCCCceeEeeCCCcceeEEcccCCCCCcceeeeecCCcCC
Q 027837 8 ALSPDHLSSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTN 54 (218)
Q Consensus 8 ~~s~d~l~~~E~lCYV~CnfCnTILaVsVPcssL~~~VTVRCGHCtn 54 (218)
.+++=++...+-.=|.||++|.| ....|-++|.+|.+
T Consensus 198 ~~s~v~~~~~~G~RyL~CslC~t----------eW~~~R~~C~~Cg~ 234 (309)
T PRK03564 198 VSSVVQIGTTQGLRYLHCNLCES----------EWHVVRVKCSNCEQ 234 (309)
T ss_pred hhheeeccCCCCceEEEcCCCCC----------cccccCccCCCCCC
Confidence 34432233346678999999976 57889999999997
No 27
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=61.27 E-value=1.3 Score=41.48 Aligned_cols=44 Identities=25% Similarity=0.642 Sum_probs=32.7
Q ss_pred CccCCCCCC-CCCceeEeeCCCcceeEEcccCCCCCcceeeeecCCcCCcccccc
Q 027837 7 AALSPDHLS-SSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNM 60 (218)
Q Consensus 7 ~~~s~d~l~-~~E~lCYV~CnfCnTILaVsVPcssL~~~VTVRCGHCtnLLSVNm 60 (218)
+.-||=+.. ..|-+=|.||+.|-| ..+.|-|+|-+|.+---+++
T Consensus 195 PvaSmV~~g~~~~GlRYL~CslC~t----------eW~~VR~KC~nC~~t~~l~y 239 (308)
T COG3058 195 PVASMVQIGETEQGLRYLHCSLCET----------EWHYVRVKCSNCEQSKKLHY 239 (308)
T ss_pred CcceeeeecCccccchhhhhhhHHH----------HHHHHHHHhccccccCCccc
Confidence 444555555 457889999999976 57889999999998554443
No 28
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.03 E-value=24 Score=25.66 Aligned_cols=33 Identities=15% Similarity=0.441 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027837 137 AYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 172 (218)
Q Consensus 137 ayN~fmK~ei~riK~~~P~i~hkEaFs~aAknW~~~ 172 (218)
+|..+|+-- |-++||++.+-.-+...+..|+.|
T Consensus 18 ~Fsq~vRP~---l~~~NPk~~~sKl~~l~~AKwrEF 50 (55)
T PF08073_consen 18 AFSQHVRPL---LAKANPKAPMSKLMMLLQAKWREF 50 (55)
T ss_pred HHHHHHHHH---HHHHCCCCcHHHHHHHHHHHHHHH
Confidence 455556544 457899999999999999999986
No 29
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function.
Probab=48.41 E-value=12 Score=26.21 Aligned_cols=20 Identities=30% Similarity=0.640 Sum_probs=17.0
Q ss_pred CceeEeeCCCcceeEEcccC
Q 027837 18 EQLCYVHCTFCDTVLAVSVP 37 (218)
Q Consensus 18 E~lCYV~CnfCnTILaVsVP 37 (218)
...==+||+-|.+||-+++|
T Consensus 27 k~~~klrCGaCs~vl~~s~~ 46 (46)
T PF11331_consen 27 KNQQKLRCGACSEVLSFSLP 46 (46)
T ss_pred cceeEEeCCCCceeEEEecC
Confidence 34667899999999999987
No 30
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=44.98 E-value=7 Score=34.93 Aligned_cols=33 Identities=27% Similarity=0.668 Sum_probs=17.4
Q ss_pred eeEeeCCCcceeEEcccCCCCCcceeeeecCCcCCcccccccc
Q 027837 20 LCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRG 62 (218)
Q Consensus 20 lCYV~CnfCnTILaVsVPcssL~~~VTVRCGHCtnLLSVNmr~ 62 (218)
.=|-+|.+|.|- ...+-++|.+|.|--...+..
T Consensus 195 ~R~L~Cs~C~t~----------W~~~R~~Cp~Cg~~~~~~l~~ 227 (290)
T PF04216_consen 195 KRYLHCSLCGTE----------WRFVRIKCPYCGNTDHEKLEY 227 (290)
T ss_dssp EEEEEETTT--E----------EE--TTS-TTT---SS-EEE-
T ss_pred cEEEEcCCCCCe----------eeecCCCCcCCCCCCCcceee
Confidence 468899999875 567888999999865555443
No 31
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=44.72 E-value=30 Score=30.65 Aligned_cols=34 Identities=21% Similarity=0.552 Sum_probs=29.3
Q ss_pred hhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027837 136 SAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 173 (218)
Q Consensus 136 SayN~fmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 173 (218)
++|=.||.+ .+..|.++..+|.-..||+-|...+
T Consensus 84 naYLNFLRe----FRrkh~~L~p~dlI~~AAraW~rLS 117 (183)
T PF06382_consen 84 NAYLNFLRE----FRRKHCGLSPQDLIQRAARAWCRLS 117 (183)
T ss_pred hHHHHHHHH----HHHHccCCCHHHHHHHHHHHHHhCC
Confidence 688888764 7778999999999999999998753
No 32
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=43.86 E-value=39 Score=30.44 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=37.5
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 027837 132 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 172 (218)
Q Consensus 132 QR~pSayN~fmK~ei~riK~~~P~i~hkEaFs~aAknW~~~ 172 (218)
.|--|||-.|..+-=.+|...+|+++--|.=+.+.+.|+.+
T Consensus 72 KRp~sayf~y~~~~R~ei~~~~p~l~~~e~~k~~~e~WK~L 112 (211)
T COG5648 72 KRPLSAYFLYSAENRDEIRKENPKLTFGEVGKLLSEKWKEL 112 (211)
T ss_pred CCchhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhc
Confidence 45679999999999999999999999999999999999975
No 33
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=43.44 E-value=23 Score=22.78 Aligned_cols=26 Identities=35% Similarity=0.663 Sum_probs=14.6
Q ss_pred eeCCCcceeEEcccCCCCCcceeeeecCCcCC
Q 027837 23 VHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTN 54 (218)
Q Consensus 23 V~CnfCnTILaVsVPcssL~~~VTVRCGHCtn 54 (218)
|.|.-|.|+|+.- ...-.|||--|.-
T Consensus 2 ~~C~~C~t~L~yP------~gA~~vrCs~C~~ 27 (31)
T TIGR01053 2 VVCGGCRTLLMYP------RGASSVRCALCQT 27 (31)
T ss_pred cCcCCCCcEeecC------CCCCeEECCCCCe
Confidence 4566676666643 2334566666643
No 34
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=38.30 E-value=45 Score=24.56 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=23.2
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhcCCCCC
Q 027837 127 PPEKRQRVPSAYNRFIKDEIQRIKAGNPDIS 157 (218)
Q Consensus 127 PPEKRQR~pSayN~fmK~ei~riK~~~P~i~ 157 (218)
|.+..+....+|..++++-++.||+.+|+.+
T Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~p 59 (88)
T PF12876_consen 29 PAEWGDPKAEAYAEWLKEAFRWIRAVDPSQP 59 (88)
T ss_dssp TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhCCCCc
Confidence 4455556788999999999999999999854
No 35
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=35.70 E-value=26 Score=23.15 Aligned_cols=18 Identities=22% Similarity=0.589 Sum_probs=14.5
Q ss_pred cceeeeecCCcCCccccc
Q 027837 42 FKTVTVRCGHCTNLLSVN 59 (218)
Q Consensus 42 ~~~VTVRCGHCtnLLSVN 59 (218)
|.+|+|.|-+|.+-.+|.
T Consensus 1 Ma~i~v~CP~C~s~~~v~ 18 (36)
T PF03811_consen 1 MAKIDVHCPRCQSTEGVK 18 (36)
T ss_pred CCcEeeeCCCCCCCCcce
Confidence 468999999999877653
No 36
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=35.18 E-value=10 Score=28.08 Aligned_cols=14 Identities=43% Similarity=1.016 Sum_probs=11.5
Q ss_pred eeeeecCCcCCccc
Q 027837 44 TVTVRCGHCTNLLS 57 (218)
Q Consensus 44 ~VTVRCGHCtnLLS 57 (218)
+-|.||-||+-||-
T Consensus 2 ~~tiRC~~CnKlLa 15 (60)
T COG4416 2 MQTIRCAKCNKLLA 15 (60)
T ss_pred ceeeehHHHhHHHH
Confidence 45899999998874
No 37
>PF05047 L51_S25_CI-B8: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain ; InterPro: IPR007741 Proteins containing this domain are located in the mitochondrion and include ribosomal protein L51, and S25. This domain is also found in mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) 1.6.5.3 from EC. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins.; PDB: 1S3A_A.
Probab=33.91 E-value=29 Score=23.20 Aligned_cols=19 Identities=26% Similarity=0.641 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHhcCCCCC
Q 027837 139 NRFIKDEIQRIKAGNPDIS 157 (218)
Q Consensus 139 N~fmK~ei~riK~~~P~i~ 157 (218)
..|+++-+..||..||++.
T Consensus 2 R~F~~~~lp~l~~~NP~v~ 20 (52)
T PF05047_consen 2 RDFLKNNLPTLKYHNPQVQ 20 (52)
T ss_dssp HHHHHHTHHHHHHHSTT--
T ss_pred HhHHHHhHHHHHHHCCCcE
Confidence 3699999999999999864
No 38
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=30.81 E-value=38 Score=27.61 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=32.9
Q ss_pred EeeCCCcceeEEcccCCCCCcceeeeecCCcCCcccccccccCCc
Q 027837 22 YVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLP 66 (218)
Q Consensus 22 YV~CnfCnTILaVsVPcssL~~~VTVRCGHCtnLLSVNmr~ll~p 66 (218)
|--|-||+-...|+---.-=.++-|+-||-|.--.-+-.++++.|
T Consensus 22 ~FtCp~Cghe~vs~ctvkk~~~~g~~~Cg~CGls~e~ev~~l~~~ 66 (104)
T COG4888 22 TFTCPRCGHEKVSSCTVKKTVNIGTAVCGNCGLSFECEVPELSEP 66 (104)
T ss_pred eEecCccCCeeeeEEEEEecCceeEEEcccCcceEEEeccccccc
Confidence 668999999998876666677888999999974444444444444
No 39
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=30.68 E-value=25 Score=29.28 Aligned_cols=36 Identities=28% Similarity=0.285 Sum_probs=30.7
Q ss_pred CCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 027837 133 RVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN 168 (218)
Q Consensus 133 R~pSayN~fmK~ei~riK~~~P~i~hkEaFs~aAkn 168 (218)
...+.-.+=++.||+++|+|.-.|+.+|-|...||+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl 71 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKL 71 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 456777788999999999999999999999998886
No 40
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=30.09 E-value=27 Score=22.53 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=10.9
Q ss_pred CceeEeeCCCcceeEEcc
Q 027837 18 EQLCYVHCTFCDTVLAVS 35 (218)
Q Consensus 18 E~lCYV~CnfCnTILaVs 35 (218)
+..-++.|++|+.++..+
T Consensus 12 ~~~~~a~C~~C~~~~~~~ 29 (45)
T PF02892_consen 12 GDKKKAKCKYCGKVIKYS 29 (45)
T ss_dssp GCSS-EEETTTTEE----
T ss_pred CCcCeEEeCCCCeEEeeC
Confidence 356789999999888765
No 41
>COG3712 FecR Fe2+-dicitrate sensor, membrane component [Inorganic ion transport and metabolism / Signal transduction mechanisms]
Probab=29.52 E-value=46 Score=31.41 Aligned_cols=30 Identities=23% Similarity=0.535 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027837 142 IKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 173 (218)
Q Consensus 142 mK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 173 (218)
.++|.+||++..|+ |.+||..+..-|+...
T Consensus 33 ~r~af~~W~~~~p~--H~~A~~~~e~lw~~l~ 62 (322)
T COG3712 33 DRAAFERWRAASPE--HARAWERAERLWQALG 62 (322)
T ss_pred HHHHHHHHHhcCHH--HHHHHHHHHHHHhhhc
Confidence 56899999999997 9999999999999875
No 42
>PF10238 Eapp_C: E2F-associated phosphoprotein; InterPro: IPR019370 This entry represents E2F binding proteins. E2F transcription factors play an essential role in cell proliferation and apoptosis and their activity is frequently deregulated in human cancers. E2F activity is regulated by a variety of mechanisms, frequently mediated by proteins binding to individual members or a subgroup of the family. E2F-associated phosphoprotein (EAPP)interacts with a subset of E2F factors and influences E2F-dependent promoter activity. EAPP is present throughout the cell cycle but disappears during mitosis [].
Probab=29.39 E-value=30 Score=28.96 Aligned_cols=17 Identities=41% Similarity=0.637 Sum_probs=13.6
Q ss_pred CceeEeeCCCcceeEEc
Q 027837 18 EQLCYVHCTFCDTVLAV 34 (218)
Q Consensus 18 E~lCYV~CnfCnTILaV 34 (218)
|-.==|+|.-|+|.+||
T Consensus 105 e~yhPV~Cs~C~TeVaV 121 (136)
T PF10238_consen 105 ETYHPVKCSECSTEVAV 121 (136)
T ss_pred ccEeceecccCCCEEEE
Confidence 33344999999999998
No 43
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=28.90 E-value=70 Score=31.07 Aligned_cols=45 Identities=29% Similarity=0.555 Sum_probs=39.7
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027837 126 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 173 (218)
Q Consensus 126 KPPEKRQR~pSayN~fmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 173 (218)
|||||- .-.|=||-+.=-..+||.||++---|.=+.+.+.|.+.|
T Consensus 63 kppekp---l~pymrySrkvWd~VkA~nPe~kLWeiGK~Ig~mW~dLp 107 (410)
T KOG4715|consen 63 KPPEKP---LMPYMRYSRKVWDQVKASNPELKLWEIGKIIGGMWLDLP 107 (410)
T ss_pred CCCCcc---cchhhHHhhhhhhhhhccCcchHHHHHHHHHHHHHhhCc
Confidence 788874 557999999999999999999999999999999999876
No 44
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=28.61 E-value=1.4e+02 Score=26.28 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=38.4
Q ss_pred CCCCcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCCcc
Q 027837 125 NRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHI 175 (218)
Q Consensus 125 ~KPPEKRQR~pSayN~fmK~ei~riK~~~P~i~hkEaFs~aAknW~~~Phi 175 (218)
.+.++|+.|.-.+|+.|+--= +...|+++.|++=...++-|...|+-
T Consensus 38 ~~~~~~~kr~lN~Fm~FRsyy----~~~~~~~~Qk~~S~~l~~lW~~dp~k 84 (201)
T PF04769_consen 38 KRSPEKAKRPLNGFMAFRSYY----SPIFPPLPQKELSGILTKLWEKDPFK 84 (201)
T ss_pred cccccccccchhHHHHHHHHH----HhhcCCcCHHHHHHHHHHHHhCCccH
Confidence 456788889999999987643 36678899999999999999998863
No 45
>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.
Probab=27.59 E-value=44 Score=24.45 Aligned_cols=31 Identities=23% Similarity=0.653 Sum_probs=16.0
Q ss_pred CceeEeeCCCcceeEEcccCCCCCcceeeeecCCcCC
Q 027837 18 EQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTN 54 (218)
Q Consensus 18 E~lCYV~CnfCnTILaVsVPcssL~~~VTVRCGHCtn 54 (218)
...+.|-||=|+.-=- | -|-++-.+|+||.+
T Consensus 26 ~~~v~IlCNDC~~~s~--v----~fH~lg~KC~~C~S 56 (61)
T PF14599_consen 26 NKKVWILCNDCNAKSE--V----PFHFLGHKCSHCGS 56 (61)
T ss_dssp --EEEEEESSS--EEE--E----E--TT----TTTS-
T ss_pred CCEEEEECCCCCCccc--e----eeeHhhhcCCCCCC
Confidence 4679999999987543 3 37788899999975
No 46
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=27.48 E-value=33 Score=25.63 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=16.0
Q ss_pred eCCCcceeEEcccCCCC-CcceeeeecCCcCCc
Q 027837 24 HCTFCDTVLAVSVPCTS-LFKTVTVRCGHCTNL 55 (218)
Q Consensus 24 ~CnfCnTILaVsVPcss-L~~~VTVRCGHCtnL 55 (218)
-|+-|+|-=+-.+=-.+ =--+|-|||+.|.|.
T Consensus 6 TC~~C~~Rs~~~~sk~aY~~GvViv~C~gC~~~ 38 (66)
T PF05180_consen 6 TCNKCGTRSAKMFSKQAYHKGVVIVQCPGCKNR 38 (66)
T ss_dssp EETTTTEEEEEEEEHHHHHTSEEEEE-TTS--E
T ss_pred EcCCCCCccceeeCHHHHhCCeEEEECCCCcce
Confidence 36666665442221100 124799999999985
No 47
>PF01020 Ribosomal_L40e: Ribosomal L40e family; InterPro: IPR001975 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the L40 ribosomal protein from both archaea and eukaryotes. Bovine ribosomal protein L40 has been identified as a secondary RNA binding protein []. L40 is fused to a ubiquitin protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_p 3IZR_p 2AYJ_A 4A1B_K 4A19_K 4A18_K 4A1D_K.
Probab=26.25 E-value=24 Score=25.51 Aligned_cols=9 Identities=56% Similarity=1.220 Sum_probs=5.4
Q ss_pred ecCCcCCcc
Q 027837 48 RCGHCTNLL 56 (218)
Q Consensus 48 RCGHCtnLL 56 (218)
+|||+++|-
T Consensus 38 kCGhsn~LR 46 (52)
T PF01020_consen 38 KCGHSNNLR 46 (52)
T ss_dssp SCTS-S-EE
T ss_pred cCCCCcccC
Confidence 399999874
No 48
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=25.90 E-value=45 Score=22.43 Aligned_cols=14 Identities=21% Similarity=0.627 Sum_probs=11.8
Q ss_pred eEeeCCCcceeEEc
Q 027837 21 CYVHCTFCDTVLAV 34 (218)
Q Consensus 21 CYV~CnfCnTILaV 34 (218)
-++.|++|..+|..
T Consensus 17 ~~a~C~~C~~~l~~ 30 (50)
T smart00614 17 QRAKCKYCGKKLSR 30 (50)
T ss_pred eEEEecCCCCEeee
Confidence 58999999998863
No 49
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=25.73 E-value=66 Score=29.33 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=23.4
Q ss_pred hhhhHHHHHHHHHHHhcCCCCCHHH
Q 027837 136 SAYNRFIKDEIQRIKAGNPDISHRE 160 (218)
Q Consensus 136 SayN~fmK~ei~riK~~~P~i~hkE 160 (218)
..|..||++...+-|+.+|.+|.|+
T Consensus 8 ~dYR~fl~d~ye~rk~~~p~fS~R~ 32 (271)
T TIGR02147 8 TDYRKYLRDYYEERKKTDPAFSWRF 32 (271)
T ss_pred hhHHHHHHHHHHHHhccCcCcCHHH
Confidence 3699999999999999999999998
No 50
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=25.35 E-value=61 Score=24.42 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcC
Q 027837 141 FIKDEIQRIKAGN 153 (218)
Q Consensus 141 fmK~ei~riK~~~ 153 (218)
-..+||.|+|++-
T Consensus 36 lLq~EIeRlkAe~ 48 (65)
T COG5509 36 LLQAEIERLKAEL 48 (65)
T ss_pred HHHHHHHHHHHHH
Confidence 5789999999874
No 51
>KOG4520 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.17 E-value=81 Score=28.70 Aligned_cols=30 Identities=33% Similarity=0.371 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHhcC----------------CCCCHHHHHHHHHHh
Q 027837 139 NRFIKDEIQRIKAGN----------------PDISHREAFSAAAKN 168 (218)
Q Consensus 139 N~fmK~ei~riK~~~----------------P~i~hkEaFs~aAkn 168 (218)
---|||||++||+.. |.-=-|+-|+.++|.
T Consensus 62 ~~~~keEi~~vkE~E~~al~eALGl~k~stqP~gL~k~~fse~~kR 107 (238)
T KOG4520|consen 62 KEKYKEEILEVKEREQRALAEALGLPKSSTQPSGLLKLTFSEAAKR 107 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcchhHHHHHHHHhh
Confidence 345899999999864 332356666666665
No 52
>PF00527 E7: E7 protein, Early protein; InterPro: IPR000148 This family includes the E7 oncoprotein from various papillomaviruses []. Along with E5 and E6 their activities seem to be especially important for viral oncogenesis. E5 is located at the cell surface and reduces cell gap-gap junction communication. In cervical cancer E5 is expressed in earlier stages of neoplastic transformation of the cervical epithelium during viral infection. The role of E7 is less well understood but it has been shown to impede growth arrest signals in both NIH 3T3 cells and HFKs and that this correlates with elevated cdc25A gene expression. This deregulation of cdc25A is linked to disruption of cell cycle arrest [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2F8B_A 2EWL_A 2B9D_A.
Probab=24.04 E-value=32 Score=26.64 Aligned_cols=31 Identities=23% Similarity=0.561 Sum_probs=15.9
Q ss_pred eeCCCcceeEEcccCCCC---------CcceeeeecCCcC
Q 027837 23 VHCTFCDTVLAVSVPCTS---------LFKTVTVRCGHCT 53 (218)
Q Consensus 23 V~CnfCnTILaVsVPcss---------L~~~VTVRCGHCt 53 (218)
+.|.+|++.|-+.|=++. |+..+..-|..|+
T Consensus 53 t~C~~C~~~lrl~V~as~~~Ir~lq~LLl~~L~lvCp~Ca 92 (92)
T PF00527_consen 53 TCCGRCGKRLRLVVVASHEGIRTLQQLLLGDLSLVCPPCA 92 (92)
T ss_dssp EEBTTT--EEEEEEEC-HHHHHHHHHHHHCT-EE--CCCH
T ss_pred eECCCCCCEEEEEEEeChhhHHHHHHHhhcCceEeCCCCC
Confidence 467777777777666653 4556666666663
No 53
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=23.97 E-value=88 Score=27.53 Aligned_cols=35 Identities=20% Similarity=0.121 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc
Q 027837 137 AYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAH 171 (218)
Q Consensus 137 ayN~fmK~ei~riK~~~P~i~hkEaFs~aAknW~~ 171 (218)
-=|.=|++||+.+|+++-.++-.+-|..-|++=+.
T Consensus 44 kk~~q~~~ei~dmKqelnavs~qD~fAkwaRlnRK 78 (175)
T KOG4253|consen 44 KKESQKVAEIQDMKQELNAVSMQDNFAKWARLNRK 78 (175)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 34667899999999999999999999877766544
No 54
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=23.91 E-value=1.2e+02 Score=21.77 Aligned_cols=32 Identities=31% Similarity=0.378 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc
Q 027837 140 RFIKDEIQRIKAGNPDISHREAFSAAAKNWAH 171 (218)
Q Consensus 140 ~fmK~ei~riK~~~P~i~hkEaFs~aAknW~~ 171 (218)
.++.+.|..++..+|.++-..+...||-|-++
T Consensus 28 ~~i~~~i~~~~~~~~~~~~~~~~vlaaLnla~ 59 (89)
T PF05164_consen 28 ELINEKINEIKKKYPKLSPERLAVLAALNLAD 59 (89)
T ss_dssp HHHHHHHHHHCTTCCTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999988665
No 55
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=23.87 E-value=93 Score=27.00 Aligned_cols=37 Identities=32% Similarity=0.614 Sum_probs=29.1
Q ss_pred EeeCCCc---ceeEEcccCCCCCcceeeeecCCcCCcccccccccC
Q 027837 22 YVHCTFC---DTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLL 64 (218)
Q Consensus 22 YV~CnfC---nTILaVsVPcssL~~~VTVRCGHCtnLLSVNmr~ll 64 (218)
||.|.-| +|.|.+. + .+...+|.-|..-.+|.-....
T Consensus 98 yV~C~~C~~pdT~l~k~---~---~~~~l~C~aCGa~~~v~~~~~~ 137 (201)
T PRK12336 98 YVICSECGLPDTRLVKE---D---RVLMLRCDACGAHRPVKKRKAS 137 (201)
T ss_pred eEECCCCCCCCcEEEEc---C---CeEEEEcccCCCCccccccccc
Confidence 9999999 4777764 2 5667899999999999766543
No 56
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=23.84 E-value=22 Score=28.93 Aligned_cols=43 Identities=23% Similarity=0.529 Sum_probs=30.2
Q ss_pred CceeEeeCCCcceeEEc--------ccCCC----CCcceeeeecCCcCCcccccc
Q 027837 18 EQLCYVHCTFCDTVLAV--------SVPCT----SLFKTVTVRCGHCTNLLSVNM 60 (218)
Q Consensus 18 E~lCYV~CnfCnTILaV--------sVPcs----sL~~~VTVRCGHCtnLLSVNm 60 (218)
+-+==.+|.-|++--|- .-|.. ..|+.-.|-||+|-++|+++=
T Consensus 22 ~Diialkc~~C~kyYaCy~CHdel~~Hpf~p~~~~~~~~~~iiCGvC~~~LT~~E 76 (105)
T COG4357 22 LDIIALKCKCCQKYYACYHCHDELEDHPFEPWGLQEFNPKAIICGVCRKLLTRAE 76 (105)
T ss_pred cceEeeeechhhhhhhHHHHHhHHhcCCCccCChhhcCCccEEhhhhhhhhhHHH
Confidence 33444678888877662 22332 578888899999999999863
No 57
>PF14722 KRAP_IP3R_bind: Ki-ras-induced actin-interacting protein-IP3R-interacting domain
Probab=23.68 E-value=80 Score=27.46 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCCccccccC
Q 027837 138 YNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM 180 (218)
Q Consensus 138 yN~fmK~ei~riK~~~P~i~hkEaFs~aAknW~~~PhihfGL~ 180 (218)
...|++.++|||..|||.+.---+|.+.-. |+|--+.-+.|-
T Consensus 71 ~~~FL~aQ~qrm~~E~p~~~l~~RFRQ~ev-L~~vanaFssLy 112 (160)
T PF14722_consen 71 IRVFLEAQKQRMDIENPNLALASRFRQLEV-LTHVANAFSSLY 112 (160)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 568999999999999999766666766433 444444445554
No 58
>PF02723 NS3_envE: Non-structural protein NS3/Small envelope protein E; InterPro: IPR003873 This is a family of small nonstructural proteins, well conserved among Coronavirus strains. This protein is also found in Murine hepatitis virus as small envelope protein E.; GO: 0016020 membrane
Probab=23.57 E-value=14 Score=28.71 Aligned_cols=15 Identities=40% Similarity=1.101 Sum_probs=12.3
Q ss_pred ceeEeeCCCcceeEE
Q 027837 19 QLCYVHCTFCDTVLA 33 (218)
Q Consensus 19 ~lCYV~CnfCnTILa 33 (218)
|+|..=|++|||++.
T Consensus 38 qLC~~cc~~~n~~v~ 52 (82)
T PF02723_consen 38 QLCFQCCRLCNTTVY 52 (82)
T ss_pred HHHHHHhhhhcceEe
Confidence 688888999988764
No 59
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=23.40 E-value=38 Score=22.37 Aligned_cols=14 Identities=36% Similarity=0.978 Sum_probs=11.2
Q ss_pred eeecCCcCCccccc
Q 027837 46 TVRCGHCTNLLSVN 59 (218)
Q Consensus 46 TVRCGHCtnLLSVN 59 (218)
.|+||+|..-+...
T Consensus 5 ~l~C~~CG~~m~~~ 18 (58)
T PF13408_consen 5 LLRCGHCGSKMTRR 18 (58)
T ss_pred cEEcccCCcEeEEE
Confidence 47999999887763
No 60
>PF01667 Ribosomal_S27e: Ribosomal protein S27; InterPro: IPR000592 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families include mammalian, yeast, Chlamydomonas reinhardtii and Entamoeba histolytica S27, and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0250 []. These proteins have from 62 to 87 amino acids. They contain, in their central section, a putative zinc-finger region of the type C-x(2)-C-x(14)-C-x(2)-C.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1QXF_A 3IZ6_X 2XZN_6 2XZM_6 3U5G_b 3IZB_X 3U5C_b.
Probab=22.39 E-value=55 Score=23.68 Aligned_cols=11 Identities=64% Similarity=1.195 Sum_probs=9.1
Q ss_pred eeCCCcceeEE
Q 027837 23 VHCTFCDTVLA 33 (218)
Q Consensus 23 V~CnfCnTILa 33 (218)
|.|..|.|+|+
T Consensus 27 V~C~~Cg~~L~ 37 (55)
T PF01667_consen 27 VKCVVCGTVLA 37 (55)
T ss_dssp EE-SSSTSEEE
T ss_pred EEcccCCCEec
Confidence 88999999997
No 61
>PRK09774 fec operon regulator FecR; Reviewed
Probab=21.96 E-value=67 Score=29.12 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 027837 143 KDEIQRIKAGNPDISHREAFSAAAKNWAHFP 173 (218)
Q Consensus 143 K~ei~riK~~~P~i~hkEaFs~aAknW~~~P 173 (218)
.++.++|.+++|+ |++||..+..-|....
T Consensus 33 ~~~f~~Wl~a~p~--H~~A~~~~~~lw~~~~ 61 (319)
T PRK09774 33 EARWQQWYEQDQD--NQWAWQQVENLRNQMG 61 (319)
T ss_pred HHHHHHHHhCCHH--HHHHHHHHHHHHHHhh
Confidence 3678999999997 9999999999997753
No 62
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=21.84 E-value=42 Score=31.83 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=21.8
Q ss_pred cccCCCchhhhHHHHHHHHHHHhcCC---CCCHHHHHHHHH
Q 027837 129 EKRQRVPSAYNRFIKDEIQRIKAGNP---DISHREAFSAAA 166 (218)
Q Consensus 129 EKRQR~pSayN~fmK~ei~riK~~~P---~i~hkEaFs~aA 166 (218)
|||.|. -|--|+|+|||+|.- -|+-+-+=.+|-
T Consensus 246 eKRPRT-----AFtaeQL~RLK~EF~enRYlTEqRRQ~La~ 281 (342)
T KOG0493|consen 246 EKRPRT-----AFTAEQLQRLKAEFQENRYLTEQRRQELAQ 281 (342)
T ss_pred hcCccc-----cccHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 566664 477899999999863 345555444443
No 63
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=21.01 E-value=1.1e+02 Score=25.38 Aligned_cols=33 Identities=24% Similarity=0.515 Sum_probs=24.5
Q ss_pred eEeeCCCc---ceeEEcccCCCCCcceeeeecCCcCCccccc
Q 027837 21 CYVHCTFC---DTVLAVSVPCTSLFKTVTVRCGHCTNLLSVN 59 (218)
Q Consensus 21 CYV~CnfC---nTILaVsVPcssL~~~VTVRCGHCtnLLSVN 59 (218)
=||-|.-| +|.|... ++ +-..+|--|..-.+|.
T Consensus 96 ~yVlC~~C~sPdT~l~k~---~r---~~~l~C~ACGa~~~v~ 131 (133)
T TIGR00311 96 KYVICRECNRPDTRIIKE---GR---VSLLKCEACGAKAPLR 131 (133)
T ss_pred heEECCCCCCCCcEEEEe---CC---eEEEecccCCCCCccC
Confidence 49999999 4777763 33 3367999999887773
No 64
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=20.35 E-value=93 Score=28.84 Aligned_cols=17 Identities=41% Similarity=0.874 Sum_probs=13.2
Q ss_pred ceeeeecCCcCCccccc
Q 027837 43 KTVTVRCGHCTNLLSVN 59 (218)
Q Consensus 43 ~~VTVRCGHCtnLLSVN 59 (218)
...-|+||||.+-..-|
T Consensus 154 ~~~rv~CghC~~~Fl~~ 170 (256)
T PF09788_consen 154 GSCRVICGHCSNTFLFN 170 (256)
T ss_pred CceeEECCCCCCcEecc
Confidence 45779999999876655
No 65
>PF13565 HTH_32: Homeodomain-like domain
Probab=20.23 E-value=2.9e+02 Score=19.09 Aligned_cols=30 Identities=13% Similarity=0.157 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 027837 139 NRFIKDEIQRIKAGNPDISHREAFSAAAKN 168 (218)
Q Consensus 139 N~fmK~ei~riK~~~P~i~hkEaFs~aAkn 168 (218)
..-++++|..+..++|+.+-++.-...+..
T Consensus 32 ~~e~~~~i~~~~~~~p~wt~~~i~~~L~~~ 61 (77)
T PF13565_consen 32 DPEQRERIIALIEEHPRWTPREIAEYLEEE 61 (77)
T ss_pred cHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 566779999999999999999987776664
Done!