Query 027838
Match_columns 218
No_of_seqs 157 out of 270
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 15:58:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3112 Uncharacterized conser 100.0 1.5E-47 3.3E-52 325.1 7.8 209 1-215 1-209 (262)
2 PF09754 PAC2: PAC2 family; I 100.0 6E-29 1.3E-33 211.5 9.0 138 18-162 1-140 (219)
3 COG1938 Archaeal enzymes of AT 100.0 2.1E-27 4.5E-32 207.1 15.4 154 8-175 9-162 (244)
4 TIGR00161 conserved hypothetic 99.9 1.7E-25 3.6E-30 195.2 15.0 139 9-164 10-148 (238)
5 COG2047 Uncharacterized protei 99.5 6.4E-14 1.4E-18 120.9 11.9 194 10-217 12-213 (258)
6 TIGR00162 conserved hypothetic 98.2 1.1E-05 2.3E-10 68.6 9.6 73 81-160 14-87 (188)
7 TIGR03649 ergot_EASG ergot alk 59.8 73 0.0016 27.3 8.7 101 17-125 2-108 (285)
8 PLN00106 malate dehydrogenase 59.1 80 0.0017 28.9 9.2 107 16-126 20-139 (323)
9 PF01113 DapB_N: Dihydrodipico 55.3 3.5 7.5E-05 32.2 -0.3 96 21-127 4-105 (124)
10 PF00056 Ldh_1_N: lactate/mala 54.4 59 0.0013 25.8 6.7 103 21-125 4-121 (141)
11 COG4273 Uncharacterized conser 48.4 15 0.00032 29.8 2.2 24 14-37 14-37 (135)
12 cd05290 LDH_3 A subgroup of L- 45.7 1.4E+02 0.003 27.1 8.4 102 21-125 3-122 (307)
13 PF01073 3Beta_HSD: 3-beta hyd 43.9 90 0.0019 27.6 6.8 104 24-127 5-121 (280)
14 PF08859 DGC: DGC domain; Int 42.8 16 0.00034 28.3 1.6 21 17-37 1-21 (110)
15 cd05313 NAD_bind_2_Glu_DH NAD( 41.0 52 0.0011 29.3 4.8 38 11-51 34-71 (254)
16 PF02633 Creatininase: Creatin 40.5 40 0.00087 29.0 4.0 32 93-124 79-110 (237)
17 PTZ00325 malate dehydrogenase; 35.5 2.9E+02 0.0063 25.3 8.9 97 22-125 13-128 (321)
18 cd05293 LDH_1 A subgroup of L- 34.8 1.4E+02 0.0031 27.0 6.8 104 16-125 5-123 (312)
19 PLN02477 glutamate dehydrogena 34.4 69 0.0015 30.5 4.8 37 12-51 203-239 (410)
20 TIGR01599 PYST-A Plasmodium yo 32.1 15 0.00033 31.9 0.0 53 72-127 97-149 (208)
21 PF00208 ELFV_dehydrog: Glutam 31.8 75 0.0016 27.9 4.3 37 12-51 29-65 (244)
22 KOG3112 Uncharacterized conser 31.7 35 0.00076 30.1 2.1 26 193-218 173-198 (262)
23 PRK10076 pyruvate formate lyas 31.1 58 0.0013 28.0 3.4 35 87-121 130-166 (213)
24 PLN02602 lactate dehydrogenase 29.6 2.3E+02 0.005 26.2 7.3 101 22-125 42-157 (350)
25 PTZ00079 NADP-specific glutama 29.3 99 0.0021 30.0 5.0 38 11-51 233-270 (454)
26 COG1348 NifH Nitrogenase subun 28.4 56 0.0012 29.5 2.9 148 21-180 90-244 (278)
27 PF02826 2-Hacid_dh_C: D-isome 27.6 98 0.0021 25.3 4.1 35 10-47 31-65 (178)
28 PF00388 PI-PLC-X: Phosphatidy 27.2 1E+02 0.0022 24.3 4.0 49 73-122 44-92 (146)
29 PF14542 Acetyltransf_CG: GCN5 26.9 1.9E+02 0.0041 20.6 5.1 40 76-115 15-57 (78)
30 cd04301 NAT_SF N-Acyltransfera 26.3 1.2E+02 0.0025 18.1 3.5 25 95-119 40-64 (65)
31 cd01076 NAD_bind_1_Glu_DH NAD( 26.0 1.2E+02 0.0025 26.3 4.5 37 12-51 28-64 (227)
32 cd05211 NAD_bind_Glu_Leu_Phe_V 25.7 86 0.0019 27.0 3.6 38 12-52 20-57 (217)
33 PF02887 PK_C: Pyruvate kinase 25.2 1.3E+02 0.0029 22.7 4.3 62 99-163 2-63 (117)
34 TIGR02886 spore_II_AA anti-sig 25.2 2.1E+02 0.0046 20.7 5.3 39 81-119 6-44 (106)
35 cd08557 PI-PLCc_bacteria_like 24.7 2.3E+02 0.005 24.1 6.1 50 73-123 55-105 (271)
36 cd07389 MPP_PhoD Bacillus subt 23.9 72 0.0016 26.6 2.7 19 104-122 181-199 (228)
37 PF10673 DUF2487: Protein of u 23.0 1.1E+02 0.0024 25.0 3.5 24 101-124 72-95 (142)
38 TIGR01921 DAP-DH diaminopimela 21.8 95 0.0021 28.7 3.2 34 18-51 4-37 (324)
39 PLN02306 hydroxypyruvate reduc 21.6 94 0.002 29.2 3.2 34 12-47 162-195 (386)
40 cd07041 STAS_RsbR_RsbS_like Su 21.2 2.3E+02 0.0051 20.6 4.8 77 82-161 9-96 (109)
41 PF04122 CW_binding_2: Putativ 20.9 53 0.0011 23.8 1.1 27 99-125 58-84 (92)
42 cd02406 CRS2 Chloroplast RNA s 20.9 65 0.0014 27.5 1.8 69 27-96 21-99 (191)
43 PF09423 PhoD: PhoD-like phosp 20.7 85 0.0019 29.6 2.8 22 102-123 352-373 (453)
44 PF10116 Host_attach: Protein 20.6 1.5E+02 0.0032 23.3 3.7 36 89-124 62-101 (138)
45 PF11215 DUF3010: Protein of u 20.5 2.9E+02 0.0062 22.6 5.4 31 90-120 38-68 (138)
46 PF13460 NAD_binding_10: NADH( 20.3 1.8E+02 0.0039 22.9 4.2 91 24-127 6-103 (183)
47 KOG4039 Serine/threonine kinas 20.2 2.8E+02 0.006 24.3 5.5 136 15-162 19-161 (238)
No 1
>KOG3112 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-47 Score=325.13 Aligned_cols=209 Identities=28% Similarity=0.408 Sum_probs=189.4
Q ss_pred CceeecCCcccCCCCCEEEEcccCccchHHHHHHHHHhccCCeEEEEEecCCcccccccCCCCCCCCCCcceeeEeeeeC
Q 027838 1 MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESS 80 (218)
Q Consensus 1 m~f~~~~~~~~~l~~~tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~~lpPvvg~~~y~~~~~g~l~tp~EvY~s~ 80 (218)
|+|...+++.+|..++|+|+|+.++||||||||||||.+.+|+||||+++++|.|+|||++|.+.+.+.++.|+|||.+.
T Consensus 1 m~f~~~~~~~~~~~~~t~i~p~~~vgn~~qla~dlli~s~~~~rIGy~~~p~LiP~vGn~aY~~~p~~E~~~~~EvYe~~ 80 (262)
T KOG3112|consen 1 MLFLKDKRTTLDVAEHTVIIPSICVGNAAQLACDLLIASKELRRIGYITHPALIPVVGNSAYQHEPKEEKVSSCEVYEGT 80 (262)
T ss_pred CceecccCeeeccccceeEecceeeCcHHHHHHHHhhccccchhcccccCCceeeeecCCcCCCCCCcceeeceeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred CCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCceEEEEeccCccccccccCCCCCeEEEEeccCCCChhhHHHHhCCc
Q 027838 81 SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWK 160 (218)
Q Consensus 81 ~~~i~vlqqRsPi~~~~~~~F~~~L~~wi~~~~~~~VI~Lss~~a~~r~~~~~~~~p~~y~~~s~~~~~~~~~le~Lg~~ 160 (218)
+.+++++|+|+|.+++++..|+++|++|++++|.++||+|||++...|++.+++.+|++|+++++.++..++++++|||
T Consensus 81 s~kl~~~Q~RSp~vk~~~~~F~e~l~~~~kSSG~~~VIVLSss~~~~~~~L~~srgP~~Y~lsnae~~~~~~h~~~Lg~- 159 (262)
T KOG3112|consen 81 SDKLLVVQFRSPWVKRHTAHFQEELVELLKSSGARRVIVLSSSFGFEKRVLEESRGPWAYRLSNAEENFKEAHAAQLGN- 159 (262)
T ss_pred chhhHHHHhhhHHHHhhhhHHHHHHHHHHHhcCCceEEEEecchHHHhhhhhhccCCeeEEcCchhhhhHHHHHHHhCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999998888888899999999
Q ss_pred cccccCccccchhhhhhhhcCCCCCCCCCCCcccccccccCCCCcHHHHHHhhhh
Q 027838 161 RLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKH 215 (218)
Q Consensus 161 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~a~l~~~~~~ 215 (218)
|+++ ..|.|+|++.-++..++ -+.+++.-||+.-+--.+||++||.+|.|
T Consensus 160 --eE~d-egRcwke~~~Svee~ai--pggg~~~~Lf~af~~~~v~m~~Ll~y~sE 209 (262)
T KOG3112|consen 160 --EELD-EGRCWKEHKGSVEEDAI--PGGGNALQLFKAFDEQKVPMMLLLRYLSE 209 (262)
T ss_pred --hhhh-hccchhhhCCcceeeec--CCCccHHHHHHHHHhcCCchhhHHHHhhc
Confidence 4444 77899999953333333 22457777777777777777777777765
No 2
>PF09754 PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome, which is about 2000 kilodaltons (kDa) in molecular mass and contains one 20S core particle structure and two 19S regulatory caps. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits [, , , ].; PDB: 3MNF_A 2P90_B 3E35_A 3GAA_D 2WAM_C.
Probab=99.96 E-value=6e-29 Score=211.46 Aligned_cols=138 Identities=36% Similarity=0.513 Sum_probs=111.5
Q ss_pred EEEcccCccchHHHHHHHHHhccCCeEEEEEecCCcccccccCCCCCCCCC--CcceeeEeeeeCCCcEEEEEEccCCCc
Q 027838 18 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG--DLALPLQAYESSSSGLTLIQQRSPVVK 95 (218)
Q Consensus 18 LI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~~lpPvvg~~~y~~~~~g--~l~tp~EvY~s~~~~i~vlqqRsPi~~ 95 (218)
||+|+||+|||||||+||||++|++++||++|++.+.|++|++++...++| .+.+|+|+|++++++++++|+|+|+++
T Consensus 1 li~g~~~~G~Vg~la~d~Li~~l~~~~vg~i~~~~~~P~~~~~p~~~~~~g~~~~~~~~~iy~~~~~~i~vl~~~~p~~~ 80 (219)
T PF09754_consen 1 LIEGFPGIGNVGQLAVDHLIESLNLEKVGYIDSDPLFPYVGPRPYVVVDDGSNILSPPLEIYYSEDSKILVLQGRSPIPP 80 (219)
T ss_dssp EEESSTBGGGHHHHHHHHHHHHSCEEEEEEE-HHHHSBTTTS--EEEEETTEEEEB-SEEEEEEECTTEEEEEESSE--S
T ss_pred CcCCccchhhHHHHHHHHHHHhCCCEEEEEEeccccCCCccCCCeEEeccccceeccceEEEEECCCCEEEEEecCCCCc
Confidence 799999999999999999999999999999999888888888877555556 899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhCCceEEEEeccCccccccccCCCCCeEEEEeccCCCChhhHHHHhCCccc
Q 027838 96 GMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRL 162 (218)
Q Consensus 96 ~~~~~F~~~L~~wi~~~~~~~VI~Lss~~a~~r~~~~~~~~p~~y~~~s~~~~~~~~~le~Lg~~~l 162 (218)
+..++|+++|++|+++.|+++||+|+|+++..+++ .|.+|+.++ +++..+.++..+....
T Consensus 81 ~~~~~f~~~l~~~~~~~g~~~vi~l~g~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~ 140 (219)
T PF09754_consen 81 GRWYEFAEELLDWIKSFGVKEVIVLGGLPAMEPHE-----RPPVYRVAT--SEELLDKLEEAGIELS 140 (219)
T ss_dssp CGHHHHHHHHHHHHHHTTECEEEEEEEEEESS-TT-----S-EEEEEES--SGGGHCHSHHTT-EE-
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEEEeCCcCCCCcc-----ccceEEEEc--CHHHhhhhcccccccc
Confidence 99999999999999999999999999999998762 347787775 3334456665444333
No 3
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=99.95 E-value=2.1e-27 Score=207.08 Aligned_cols=154 Identities=20% Similarity=0.309 Sum_probs=135.4
Q ss_pred CcccCCCCCEEEEcccCccchHHHHHHHHHhccCCeEEEEEecCCcccccccCCCCCCCCCCcceeeEeeeeCCCcEEEE
Q 027838 8 GKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLI 87 (218)
Q Consensus 8 ~~~~~l~~~tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~~lpPvvg~~~y~~~~~g~l~tp~EvY~s~~~~i~vl 87 (218)
....+.++++||+++|++|+||.||++|||.+|+|+.||+++++++||++. + .+|.+.+|+|+|++ +++++++
T Consensus 9 ~~~~~~e~~ilI~g~PgiGlVG~Ia~~~li~~l~m~~iG~i~s~~~PPv~v---v---~~G~~~~P~RIY~~-~~~~~~~ 81 (244)
T COG1938 9 LEKVDYENPILIEGFPGIGLVGVIAGKHLIEELNMEEIGYIESKHIPPVAV---V---VEGRALPPFRIYAS-SDGVLAL 81 (244)
T ss_pred eccccccCCEEEEeCCCCchhhHHHHHHHHHHcCCeEEEEEEecCCCCEEE---E---eCCcccCceeEEec-CCCEEEE
Confidence 345667999999999999999999999999999999999999999999993 3 36799999999999 8999999
Q ss_pred EEccCCCchhHHHHHHHHHHHHHHhCCceEEEEeccCccccccccCCCCCeEEEEeccCCCChhhHHHHhCCccccccCc
Q 027838 88 QQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNP 167 (218)
Q Consensus 88 qqRsPi~~~~~~~F~~~L~~wi~~~~~~~VI~Lss~~a~~r~~~~~~~~p~~y~~~s~~~~~~~~~le~Lg~~~l~~~~~ 167 (218)
++++||++...++|+++|++|++++|+++||+++|+++..+++ .+.+|++++ ++...++|+++|.+.++.-..
T Consensus 82 ~~dv~I~p~~i~e~s~~v~~w~~~~~v~~ii~~~g~~~~~~~e-----~~~v~~va~--~~~~~~~l~~~~~~~~~~G~I 154 (244)
T COG1938 82 VSDVPIPPAVIYEISNAVVEWAEENGVEEVISLGGMPARLREE-----KPSVYGVAT--SEEKLEKLKDLGAEPLEEGTI 154 (244)
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHcCCeEEEEecCCCcccccC-----CCceEEEec--chhhhhHHhhcCCCcccccee
Confidence 9999999999999999999999999999999999998877654 788999986 555678999999999888655
Q ss_pred cccchhhh
Q 027838 168 AQRGWKYL 175 (218)
Q Consensus 168 ~~~~~~~l 175 (218)
.+-....|
T Consensus 155 ~G~~g~ll 162 (244)
T COG1938 155 VGPSGALL 162 (244)
T ss_pred ecccHHHH
Confidence 44333333
No 4
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=99.93 E-value=1.7e-25 Score=195.17 Aligned_cols=139 Identities=12% Similarity=0.210 Sum_probs=119.2
Q ss_pred cccCCCCCEEEEcccCccchHHHHHHHHHhccCCeEEEEEecCCcccccccCCCCCCCCCCcceeeEeeeeCCCcEEEEE
Q 027838 9 KHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQ 88 (218)
Q Consensus 9 ~~~~l~~~tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~~lpPvvg~~~y~~~~~g~l~tp~EvY~s~~~~i~vlq 88 (218)
+.+++++++||.|+||+||||+||+||||++|++++||+|+++++||++.. ++|...+|+|+|.+++. ++++|
T Consensus 10 ~~~~~~~~ilI~gfpg~G~VG~iA~~~Li~~l~~~~ig~I~s~~~pP~v~v------~~g~~~~p~riY~~~~~-~vv~~ 82 (238)
T TIGR00161 10 YKEDVENPIVIEGFPGVGLVGNIAGWLLIEDLKLREIGYIDSKYFPPLAVL------YKGVAIPPVRIYEGKDG-IVLFL 82 (238)
T ss_pred cCccCCCCEEEEeCCCCChHHHHHHHHHHHHcCCeEEEEEecCCCCCeEEe------cCCeecCceEEEecCCc-EEEEE
Confidence 456899999999999999999999999999999999999999999999963 25789999999997543 68999
Q ss_pred EccCCCchhHHHHHHHHHHHHHHhCCceEEEEeccCccccccccCCCCCeEEEEeccCCCChhhHHHHhCCccccc
Q 027838 89 QRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQE 164 (218)
Q Consensus 89 qRsPi~~~~~~~F~~~L~~wi~~~~~~~VI~Lss~~a~~r~~~~~~~~p~~y~~~s~~~~~~~~~le~Lg~~~l~~ 164 (218)
+|+|+.+...++|+++|++|+++.|+++||+|+|+.+..+ .+.+|+++| ++...+.+++. ...++.
T Consensus 83 ~~~~i~p~~~~~~a~~il~~~~~~gv~~Ii~Lgg~~~~~~-------~~~v~~~at--~~~~~~~l~~~-~~~~~~ 148 (238)
T TIGR00161 83 SDFIIPPAVVYDMTNAIVEWMVRNNSRELISFNGMVVREK-------SQPVFGAAN--SQELIERLKDL-IEIFPF 148 (238)
T ss_pred ecccCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCccCCCC-------CCcEEEEEC--CHHHHHHHHHh-cCcCCC
Confidence 9999999999999999999999999999999999998642 367999886 44455566654 344443
No 5
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=99.54 E-value=6.4e-14 Score=120.87 Aligned_cols=194 Identities=19% Similarity=0.094 Sum_probs=133.0
Q ss_pred ccCCCCCEEEEcccCccchHHHHHHHHHhccCCeEEEEEecCCcccccccCCCCCCCCCCcc-eeeEeeeeCC----CcE
Q 027838 10 HLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLA-LPLQAYESSS----SGL 84 (218)
Q Consensus 10 ~~~l~~~tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~~lpPvvg~~~y~~~~~g~l~-tp~EvY~s~~----~~i 84 (218)
.++++++.||.|.|++|+||.||+||||+.|+++++..+.|+|+||-|..++ ++.+. ..-|+|+-++ +++
T Consensus 12 ep~l~~PvlieGLPGIG~VGKLaAehlv~el~aeK~~el~S~yfPPQV~V~d-----D~~vel~~ne~Y~~k~~~~~~Dl 86 (258)
T COG2047 12 EPELENPVLIEGLPGIGHVGKLAAEHLVEELKAEKFAELFSPYFPPQVLVND-----DSTVELMRNEFYYWKSPGGERDL 86 (258)
T ss_pred ccccCCceeecCCCCcchHHHHHHHHHHHHhCceeehhhhccCCCCeeEecC-----CceEEeeeceeEEEecCCCCCcE
Confidence 4778999999999999999999999999999999999999999999775443 22332 2457887654 478
Q ss_pred EEEEEccC-CCchhHHHHHHHHHHHHHHhCCceEEEEeccCccccccccCCCCCeEEEEeccCCCChhhHHHHhCCcccc
Q 027838 85 TLIQQRSP-VVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQ 163 (218)
Q Consensus 85 ~vlqqRsP-i~~~~~~~F~~~L~~wi~~~~~~~VI~Lss~~a~~r~~~~~~~~p~~y~~~s~~~~~~~~~le~Lg~~~l~ 163 (218)
+++--+.- .-+--.++.+..+++++++.|.+.|..|.|...+.-. ..|.|+.++| +..+-+.+++-|+.-=+
T Consensus 87 iil~Gd~Q~~~~~gqyel~~~~Ld~a~e~g~~~IyTLGGy~vGkl~-----eep~VlGA~t--s~eLi~~lke~gV~fr~ 159 (258)
T COG2047 87 IILVGDTQATSSEGQYELTGKILDIAKEFGARMIYTLGGYGVGKLV-----EEPRVLGAVT--SKELIEELKEHGVEFRS 159 (258)
T ss_pred EEEeccccccCcchhHHHHHHHHHHHHHcCCcEEEEecCcccCccc-----CCceeEEecC--CHHHHHHHHHcCeEecc
Confidence 88755442 3445578999999999999999999999999887632 3688999875 56677788888774322
Q ss_pred ccCccccchhhhhhhhcCCCCCCCCCCCcccccccccCCC--CcHHHHHHhhhhcC
Q 027838 164 EYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPS--LPFAALFSCFKHAS 217 (218)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~a~l~~~~~~~~ 217 (218)
..+... -.=-+-|+-|.+.-+-++++-=-=+.-.|+.| =-+|+|=..||--|
T Consensus 160 -~epgGg-IVGasGLllg~g~l~gm~gaCLMGeT~GY~vDpkaAkaVL~vl~k~lg 213 (258)
T COG2047 160 -GEPGGG-IVGASGLLLGFGELRGMDGACLMGETPGYLVDPKAAKAVLEVLCKMLG 213 (258)
T ss_pred -CCCCCc-eechhhhhhhhhhhcCCCceeeccCCCccccChHHHHHHHHHHHHHhC
Confidence 222210 11112244444433333332211123445443 23667777777554
No 6
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=98.21 E-value=1.1e-05 Score=68.57 Aligned_cols=73 Identities=16% Similarity=0.255 Sum_probs=59.4
Q ss_pred CCcEEEEEEcc-CCCchhHHHHHHHHHHHHHHhCCceEEEEeccCccccccccCCCCCeEEEEeccCCCChhhHHHHhCC
Q 027838 81 SSGLTLIQQRS-PVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGW 159 (218)
Q Consensus 81 ~~~i~vlqqRs-Pi~~~~~~~F~~~L~~wi~~~~~~~VI~Lss~~a~~r~~~~~~~~p~~y~~~s~~~~~~~~~le~Lg~ 159 (218)
.+.++++.... |+.+...++|+++|++|+++.|+++||.|+|+.+..++ ..|.+|+.+| ++++.+.++..|.
T Consensus 14 ~~~illl~g~e~~~~p~~~~e~a~~vld~a~~~gv~~iitLgG~~~~~~~-----trp~V~~~at--~~el~~~l~~~g~ 86 (188)
T TIGR00162 14 GTDLIILVGNTQSLSPEGQYELVNAIIDVAKKYGARMIYTLGGYGVGKLV-----EEPYVYGAAT--SPELVEELKEHGV 86 (188)
T ss_pred CCCEEEEEcCCCCCChhhHHHHHHHHHHHHHHcCCCEEEEecCCcCCCCC-----CCCceEEEeC--CHHHHHHHHhcCC
Confidence 36899999999 77888888999999999999999999999999886533 2477999886 4556667777665
Q ss_pred c
Q 027838 160 K 160 (218)
Q Consensus 160 ~ 160 (218)
.
T Consensus 87 ~ 87 (188)
T TIGR00162 87 K 87 (188)
T ss_pred e
Confidence 4
No 7
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=59.77 E-value=73 Score=27.35 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=52.0
Q ss_pred EEEEcccCccchHHHHHHHHHhccCCeEEEEEecCCc--cc----ccccCCCCCCCCCCcceeeEeeeeCCCcEEEEEEc
Q 027838 17 NLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFV--LP----CVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQQR 90 (218)
Q Consensus 17 tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~~l--pP----vvg~~~y~~~~~g~l~tp~EvY~s~~~~i~vlqqR 90 (218)
+||.| +.|+||.-.+..|++. +.+-.+-..++.- .+ +.+ ++. ....+..+++....-...+-.+-.=
T Consensus 2 ilVtG--atG~iG~~vv~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~--d~~--d~~~l~~a~~~~~~~~g~~d~v~~~ 74 (285)
T TIGR03649 2 ILLTG--GTGKTASRIARLLQAA-SVPFLVASRSSSSSAGPNEKHVKF--DWL--DEDTWDNPFSSDDGMEPEISAVYLV 74 (285)
T ss_pred EEEEc--CCChHHHHHHHHHHhC-CCcEEEEeCCCccccCCCCccccc--cCC--CHHHHHHHHhcccCcCCceeEEEEe
Confidence 34543 5799999999999875 5554444444321 11 111 221 1123333332211000001111111
Q ss_pred cCCCchhHHHHHHHHHHHHHHhCCceEEEEeccCc
Q 027838 91 SPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDF 125 (218)
Q Consensus 91 sPi~~~~~~~F~~~L~~wi~~~~~~~VI~Lss~~a 125 (218)
+|..+. .......+++.+++.|++++|++|+...
T Consensus 75 ~~~~~~-~~~~~~~~i~aa~~~gv~~~V~~Ss~~~ 108 (285)
T TIGR03649 75 APPIPD-LAPPMIKFIDFARSKGVRRFVLLSASII 108 (285)
T ss_pred CCCCCC-hhHHHHHHHHHHHHcCCCEEEEeecccc
Confidence 232222 2345567899999999999999998643
No 8
>PLN00106 malate dehydrogenase
Probab=59.12 E-value=80 Score=28.94 Aligned_cols=107 Identities=16% Similarity=0.094 Sum_probs=66.5
Q ss_pred CEEEEcccCccchHHHHHHHHHhccCCeEEEEEecCCcccccccCCCCCCCC-CCcc---eeeEeee-eCCCcEEEEEEc
Q 027838 16 SNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPR-GDLA---LPLQAYE-SSSSGLTLIQQR 90 (218)
Q Consensus 16 ~tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~~lpPvvg~~~y~~~~~-g~l~---tp~EvY~-s~~~~i~vlqqR 90 (218)
.+.|+| ..|+||.-..-.|...--..++--+|-......+- | ..+... -.+. ..-++|. .++-+++|+...
T Consensus 20 KV~IiG--aaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~-D-l~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 20 KVAVLG--AAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAA-D-VSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred EEEEEC--CCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEc-h-hhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 445554 23999999888887665556777777655222221 1 111000 0111 1111232 246789999999
Q ss_pred cCCCchhHH--------HHHHHHHHHHHHhCCceEEEEeccCcc
Q 027838 91 SPVVKGMMV--------EYAKNLADFAAASGNKHVVVLSALDFG 126 (218)
Q Consensus 91 sPi~~~~~~--------~F~~~L~~wi~~~~~~~VI~Lss~~a~ 126 (218)
.|-.++..+ ...+++++.+++.+++.+|+..|-+..
T Consensus 96 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD 139 (323)
T PLN00106 96 VPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVN 139 (323)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 887765322 246789999999999999999998874
No 9
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=55.28 E-value=3.5 Score=32.16 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=60.7
Q ss_pred cccCc-cchHHHHHHHHHhccCCeEEEEEecCCcccccccCCCCCCCCCCcceeeEeeeeC-----CCcEEEEEEccCCC
Q 027838 21 PALSI-GNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESS-----SSGLTLIQQRSPVV 94 (218)
Q Consensus 21 p~~sv-GnVGqLAvDlLI~sl~~~~vG~lds~~lpPvvg~~~y~~~~~g~l~tp~EvY~s~-----~~~i~vlqqRsPi~ 94 (218)
...|. |..|+..+..+.++-+++-+|.++... .|.+|.|.... -|.-.+.+.+|.+- +-+++| +..
T Consensus 4 ~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~-~~~~g~d~g~~--~~~~~~~~~v~~~l~~~~~~~DVvI---DfT-- 75 (124)
T PF01113_consen 4 GIVGASGRMGRAIAEAILESPGFELVGAVDRKP-SAKVGKDVGEL--AGIGPLGVPVTDDLEELLEEADVVI---DFT-- 75 (124)
T ss_dssp EEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT-STTTTSBCHHH--CTSST-SSBEBS-HHHHTTH-SEEE---EES--
T ss_pred EEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC-cccccchhhhh--hCcCCcccccchhHHHhcccCCEEE---EcC--
Confidence 34566 999999999999999999999999886 44555443110 12224555555431 123333 222
Q ss_pred chhHHHHHHHHHHHHHHhCCceEEEEeccCccc
Q 027838 95 KGMMVEYAKNLADFAAASGNKHVVVLSALDFGR 127 (218)
Q Consensus 95 ~~~~~~F~~~L~~wi~~~~~~~VI~Lss~~a~~ 127 (218)
..+-+.+.++++.++|..-|+--||.....
T Consensus 76 ---~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~ 105 (124)
T PF01113_consen 76 ---NPDAVYDNLEYALKHGVPLVIGTTGFSDEQ 105 (124)
T ss_dssp ----HHHHHHHHHHHHHHT-EEEEE-SSSHHHH
T ss_pred ---ChHHhHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 345677789999999998888888886443
No 10
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=54.37 E-value=59 Score=25.81 Aligned_cols=103 Identities=18% Similarity=0.200 Sum_probs=64.2
Q ss_pred cccCc-cchHHHHHHHHHhccCCeEEEEEecC-CcccccccCCCCCCCCCCcceeeEeeee-----CCCcEEEEEEccCC
Q 027838 21 PALSI-GNVGQLAVDLLVSSTGAETVGYLDDQ-FVLPCVGNDAYRPSPRGDLALPLQAYES-----SSSGLTLIQQRSPV 93 (218)
Q Consensus 21 p~~sv-GnVGqLAvDlLI~sl~~~~vG~lds~-~lpPvvg~~~y~~~~~g~l~tp~EvY~s-----~~~~i~vlqqRsPi 93 (218)
..+|. |+||+-.+-+|...--.+++.-+|.. ....-..-| ..+. ......+.++..+ ++-+++|+-...|.
T Consensus 4 ~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~D-l~~~-~~~~~~~~~i~~~~~~~~~~aDivvitag~~~ 81 (141)
T PF00056_consen 4 AIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALD-LSHA-SAPLPSPVRITSGDYEALKDADIVVITAGVPR 81 (141)
T ss_dssp EEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH-HHHH-HHGSTEEEEEEESSGGGGTTESEEEETTSTSS
T ss_pred EEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehh-hhhh-hhhcccccccccccccccccccEEEEeccccc
Confidence 34677 99999988888877445789888877 211111011 0000 0011133444443 45779999888877
Q ss_pred CchhHH--------HHHHHHHHHHHHhCCceEEEEeccCc
Q 027838 94 VKGMMV--------EYAKNLADFAAASGNKHVVVLSALDF 125 (218)
Q Consensus 94 ~~~~~~--------~F~~~L~~wi~~~~~~~VI~Lss~~a 125 (218)
-++..+ +..+++++.+++.+++-++++-+-+.
T Consensus 82 ~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv 121 (141)
T PF00056_consen 82 KPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV 121 (141)
T ss_dssp STTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH
T ss_pred cccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH
Confidence 664433 46788999999999998888877553
No 11
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=48.42 E-value=15 Score=29.78 Aligned_cols=24 Identities=42% Similarity=0.425 Sum_probs=21.8
Q ss_pred CCCEEEEcccCccchHHHHHHHHH
Q 027838 14 SCSNLILPALSIGNVGQLAVDLLV 37 (218)
Q Consensus 14 ~~~tLI~p~~svGnVGqLAvDlLI 37 (218)
+..+||.++.|..||||||-++=+
T Consensus 14 ~~l~lIfaCSG~snVgql~n~~av 37 (135)
T COG4273 14 RKLPLIFACSGASNVGQLANQLAV 37 (135)
T ss_pred CCCceEEEccccchHHHHHHHHHH
Confidence 567899999999999999999876
No 12
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=45.70 E-value=1.4e+02 Score=27.09 Aligned_cols=102 Identities=10% Similarity=0.123 Sum_probs=64.9
Q ss_pred cccCccchHHHHHHHHHhccCCeEEEEEecC-CcccccccCCCCCCCCCCcc--eeeEeeee-----CCCcEEEEEEccC
Q 027838 21 PALSIGNVGQLAVDLLVSSTGAETVGYLDDQ-FVLPCVGNDAYRPSPRGDLA--LPLQAYES-----SSSGLTLIQQRSP 92 (218)
Q Consensus 21 p~~svGnVGqLAvDlLI~sl~~~~vG~lds~-~lpPvvg~~~y~~~~~g~l~--tp~EvY~s-----~~~~i~vlqqRsP 92 (218)
..+|.|+||+-.+-.|+..--...+--+|.. ...--..- +.. +...+. ..++++.+ ++-+++|+-...|
T Consensus 3 ~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~-DL~--~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~ 79 (307)
T cd05290 3 VVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEAL-DFH--HATALTYSTNTKIRAGDYDDCADADIIVITAGPS 79 (307)
T ss_pred EEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHH-HHH--hhhccCCCCCEEEEECCHHHhCCCCEEEECCCCC
Confidence 3456799999988888765444678888852 22111101 221 111121 23567643 3678999988877
Q ss_pred CCchhH----------HHHHHHHHHHHHHhCCceEEEEeccCc
Q 027838 93 VVKGMM----------VEYAKNLADFAAASGNKHVVVLSALDF 125 (218)
Q Consensus 93 i~~~~~----------~~F~~~L~~wi~~~~~~~VI~Lss~~a 125 (218)
--|+.. .+..+++++=+++.+++-++++.+-+.
T Consensus 80 ~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv 122 (307)
T cd05290 80 IDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL 122 (307)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH
Confidence 666543 245777888889999999999998764
No 13
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=43.90 E-value=90 Score=27.55 Aligned_cols=104 Identities=20% Similarity=0.147 Sum_probs=59.3
Q ss_pred CccchHHHHHHHHHhccCCeEEEEEecCCccccccc-CCCCC--CCCCCcceeeEeeeeCCCcEEEEEEccCCCchh---
Q 027838 24 SIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGN-DAYRP--SPRGDLALPLQAYESSSSGLTLIQQRSPVVKGM--- 97 (218)
Q Consensus 24 svGnVGqLAvDlLI~sl~~~~vG~lds~~lpPvvg~-~~y~~--~~~g~l~tp~EvY~s~~~~i~vlqqRsPi~~~~--- 97 (218)
+.|.+|+=-+..|+..-....|-.+|-..-+..... ..... -..+.++.+-.+..-=+.-=+|++.-+|+....
T Consensus 5 gsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~~~~~ 84 (280)
T PF01073_consen 5 GSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPWGDYP 84 (280)
T ss_pred CCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccccCccc
Confidence 679999999999988776677776664322221100 00000 001222222111110012237778777765533
Q ss_pred HHHH-------HHHHHHHHHHhCCceEEEEeccCccc
Q 027838 98 MVEY-------AKNLADFAAASGNKHVVVLSALDFGR 127 (218)
Q Consensus 98 ~~~F-------~~~L~~wi~~~~~~~VI~Lss~~a~~ 127 (218)
...+ .+.|++-+++.+++++|+.||..+-.
T Consensus 85 ~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~ 121 (280)
T PF01073_consen 85 PEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVF 121 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeE
Confidence 2222 45699999999999999999997744
No 14
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=42.82 E-value=16 Score=28.35 Aligned_cols=21 Identities=43% Similarity=0.559 Sum_probs=17.4
Q ss_pred EEEEcccCccchHHHHHHHHH
Q 027838 17 NLILPALSIGNVGQLAVDLLV 37 (218)
Q Consensus 17 tLI~p~~svGnVGqLAvDlLI 37 (218)
.+|.|+-|..||||||-..-+
T Consensus 1 ~~v~~CSG~s~~Gqla~~aA~ 21 (110)
T PF08859_consen 1 VLVFPCSGCSNVGQLANQAAV 21 (110)
T ss_pred CEEEECCCCChHhHHHHHHHH
Confidence 379999999999999876553
No 15
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=41.00 E-value=52 Score=29.30 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=29.5
Q ss_pred cCCCCCEEEEcccCccchHHHHHHHHHhccCCeEEEEEecC
Q 027838 11 LSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (218)
Q Consensus 11 ~~l~~~tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~ 51 (218)
.++++.++++ .|.||||+-++.+|. .++++-||--|+.
T Consensus 34 ~~l~g~~vaI--qGfGnVG~~~a~~L~-e~GakvvaVsD~~ 71 (254)
T cd05313 34 ETLKGKRVAI--SGSGNVAQYAAEKLL-ELGAKVVTLSDSK 71 (254)
T ss_pred CCcCCCEEEE--ECCCHHHHHHHHHHH-HCCCEEEEEECCC
Confidence 4567776554 577999999999995 5799988877754
No 16
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=40.50 E-value=40 Score=28.97 Aligned_cols=32 Identities=9% Similarity=0.263 Sum_probs=25.3
Q ss_pred CCchhHHHHHHHHHHHHHHhCCceEEEEeccC
Q 027838 93 VVKGMMVEYAKNLADFAAASGNKHVVVLSALD 124 (218)
Q Consensus 93 i~~~~~~~F~~~L~~wi~~~~~~~VI~Lss~~ 124 (218)
+.+.-...+..+++..+.+.||++||+++|-.
T Consensus 79 l~~~t~~~~l~di~~sl~~~Gf~~ivivngHg 110 (237)
T PF02633_consen 79 LSPETLIALLRDILRSLARHGFRRIVIVNGHG 110 (237)
T ss_dssp B-HHHHHHHHHHHHHHHHHHT--EEEEEESST
T ss_pred eCHHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 45666778999999999999999999999965
No 17
>PTZ00325 malate dehydrogenase; Provisional
Probab=35.46 E-value=2.9e+02 Score=25.27 Aligned_cols=97 Identities=21% Similarity=0.193 Sum_probs=56.9
Q ss_pred ccCc-cchHHHHHHHHHhccCCeEEEEEecCCcccccccCCCCCCCCCCcceeeEeee----------eCCCcEEEEEEc
Q 027838 22 ALSI-GNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYE----------SSSSGLTLIQQR 90 (218)
Q Consensus 22 ~~sv-GnVGqLAvDlLI~sl~~~~vG~lds~~lpPvvg~~~y~~~~~g~l~tp~EvY~----------s~~~~i~vlqqR 90 (218)
..|. |+||.-..-.|..+--..++--+|-+-....+- +..+. .. ...+.. .++-+++|+-.-
T Consensus 13 IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~--Dl~~~---~~--~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 13 VLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAA--DLSHI---DT--PAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred EECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCccccc--chhhc---Cc--CceEEEecCCCchHHHhCCCCEEEECCC
Confidence 3456 999998777776443345777777632222121 11100 00 122321 135677777655
Q ss_pred cCCCchh-----HHH---HHHHHHHHHHHhCCceEEEEeccCc
Q 027838 91 SPVVKGM-----MVE---YAKNLADFAAASGNKHVVVLSALDF 125 (218)
Q Consensus 91 sPi~~~~-----~~~---F~~~L~~wi~~~~~~~VI~Lss~~a 125 (218)
.|--++. ... ..+++++-+++.+++++|+++|.+.
T Consensus 86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 5554431 222 5667899999999999999999876
No 18
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=34.81 E-value=1.4e+02 Score=27.01 Aligned_cols=104 Identities=9% Similarity=0.050 Sum_probs=62.0
Q ss_pred CEEEEcccCccchHHHHHHHHHhccCCeEEEEEecCC-cccccccCCCCCCCCCCcceeeEeeee------CCCcEEEEE
Q 027838 16 SNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQF-VLPCVGNDAYRPSPRGDLALPLQAYES------SSSGLTLIQ 88 (218)
Q Consensus 16 ~tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~~-lpPvvg~~~y~~~~~g~l~tp~EvY~s------~~~~i~vlq 88 (218)
..-|+| .|+||+-.+-.|+..=-...+--+|... ...-..- +.. +...+.....|+.+ ++-+++|+-
T Consensus 5 Ki~IiG---aG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~-Dl~--~~~~~~~~~~v~~~~dy~~~~~adivvit 78 (312)
T cd05293 5 KVTVVG---VGQVGMACAISILAKGLADELVLVDVVEDKLKGEAM-DLQ--HGSAFLKNPKIEADKDYSVTANSKVVIVT 78 (312)
T ss_pred EEEEEC---CCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHH-HHH--HhhccCCCCEEEECCCHHHhCCCCEEEEC
Confidence 344555 6999998777776654446788888532 1111100 111 01111111244431 367889886
Q ss_pred EccCCCchhHH--------HHHHHHHHHHHHhCCceEEEEeccCc
Q 027838 89 QRSPVVKGMMV--------EYAKNLADFAAASGNKHVVVLSALDF 125 (218)
Q Consensus 89 qRsPi~~~~~~--------~F~~~L~~wi~~~~~~~VI~Lss~~a 125 (218)
...|.-++..+ ...+++++-+++.+++-++++-+-+.
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~ 123 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPV 123 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChH
Confidence 66665555333 35778899999999999999988765
No 19
>PLN02477 glutamate dehydrogenase
Probab=34.39 E-value=69 Score=30.52 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=28.8
Q ss_pred CCCCCEEEEcccCccchHHHHHHHHHhccCCeEEEEEecC
Q 027838 12 SESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (218)
Q Consensus 12 ~l~~~tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~ 51 (218)
++++.++++ .|.||||+-++.+|. ..+.+-|+--|+.
T Consensus 203 ~l~g~~VaI--qGfGnVG~~~A~~L~-e~GakVVaVsD~~ 239 (410)
T PLN02477 203 SIAGQTFVI--QGFGNVGSWAAQLIH-EKGGKIVAVSDIT 239 (410)
T ss_pred CccCCEEEE--ECCCHHHHHHHHHHH-HcCCEEEEEECCC
Confidence 577877544 378999999999885 5788888777764
No 20
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=32.13 E-value=15 Score=31.85 Aligned_cols=53 Identities=21% Similarity=0.279 Sum_probs=41.2
Q ss_pred eeeEeeeeCCCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCceEEEEeccCccc
Q 027838 72 LPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGR 127 (218)
Q Consensus 72 tp~EvY~s~~~~i~vlqqRsPi~~~~~~~F~~~L~~wi~~~~~~~VI~Lss~~a~~ 127 (218)
.-+|+|- .+|+++|||--=.......+.-+|+.=++-+.=+.||+.+|.+...
T Consensus 97 ki~RvYn---pNLvmiqqry~~~~~~~~~YfyaLa~Kv~iSed~TiIv~~S~~ind 149 (208)
T TIGR01599 97 KVVRVYS---PNLIMIQQRYKDASGSPNKYFYALATKVKVSEDTTIIACTSANIND 149 (208)
T ss_pred eEEEEeC---CCeEEEEeecCCCCCCcceEEeEeeeeeecCCCcEEEEEecccccc
Confidence 4689994 7899999999776666666666777767767778899999987644
No 21
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=31.84 E-value=75 Score=27.86 Aligned_cols=37 Identities=30% Similarity=0.389 Sum_probs=29.4
Q ss_pred CCCCCEEEEcccCccchHHHHHHHHHhccCCeEEEEEecC
Q 027838 12 SESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (218)
Q Consensus 12 ~l~~~tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~ 51 (218)
++++.++++ -|.||||+-++.+|.+. +.+-||--|+.
T Consensus 29 ~l~g~~v~I--qGfG~VG~~~a~~l~~~-Ga~vv~vsD~~ 65 (244)
T PF00208_consen 29 SLEGKRVAI--QGFGNVGSHAARFLAEL-GAKVVAVSDSS 65 (244)
T ss_dssp SSTTCEEEE--EESSHHHHHHHHHHHHT-TEEEEEEEESS
T ss_pred CcCCCEEEE--ECCCHHHHHHHHHHHHc-CCEEEEEecCc
Confidence 467887776 56699999999999765 88888886655
No 22
>KOG3112 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.66 E-value=35 Score=30.13 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=21.3
Q ss_pred ccccccccCCCCcHHHHHHhhhhcCC
Q 027838 193 DDLEEEDYYPSLPFAALFSCFKHASF 218 (218)
Q Consensus 193 ~~~~~~~~~~~~p~a~l~~~~~~~~~ 218 (218)
+.-+++--+.+.|+++||++|+++++
T Consensus 173 ~Svee~aipggg~~~~Lf~af~~~~v 198 (262)
T KOG3112|consen 173 GSVEEDAIPGGGNALQLFKAFDEQKV 198 (262)
T ss_pred CcceeeecCCCccHHHHHHHHHhcCC
Confidence 44455667789999999999999985
No 23
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=31.08 E-value=58 Score=27.99 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=26.9
Q ss_pred EEEccCCCchh--HHHHHHHHHHHHHHhCCceEEEEe
Q 027838 87 IQQRSPVVKGM--MVEYAKNLADFAAASGNKHVVVLS 121 (218)
Q Consensus 87 lqqRsPi~~~~--~~~F~~~L~~wi~~~~~~~VI~Ls 121 (218)
+..|.|++|+. ..+-.+++++|+++.+++++-+|-
T Consensus 130 v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~~~llp 166 (213)
T PRK10076 130 VIPRLPLIPGFTLSRENMQQALDVLIPLGIKQIHLLP 166 (213)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEec
Confidence 45599999985 456788899999988777665443
No 24
>PLN02602 lactate dehydrogenase
Probab=29.56 E-value=2.3e+02 Score=26.24 Aligned_cols=101 Identities=12% Similarity=0.131 Sum_probs=62.0
Q ss_pred ccCccchHHHHHHHHHhccCCeEEEEEecC-CcccccccCCCCCCCCCCcceeeEeeee------CCCcEEEEEEccCCC
Q 027838 22 ALSIGNVGQLAVDLLVSSTGAETVGYLDDQ-FVLPCVGNDAYRPSPRGDLALPLQAYES------SSSGLTLIQQRSPVV 94 (218)
Q Consensus 22 ~~svGnVGqLAvDlLI~sl~~~~vG~lds~-~lpPvvg~~~y~~~~~g~l~tp~EvY~s------~~~~i~vlqqRsPi~ 94 (218)
.+|.|+||+-.+-.|+..--...+.-+|.. ....-..- +.. +.-.+....+|+.+ ++-+++|+-...|.-
T Consensus 42 IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~-DL~--~~~~~~~~~~i~~~~dy~~~~daDiVVitAG~~~k 118 (350)
T PLN02602 42 VVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEML-DLQ--HAAAFLPRTKILASTDYAVTAGSDLCIVTAGARQI 118 (350)
T ss_pred EECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHH-HHH--hhhhcCCCCEEEeCCCHHHhCCCCEEEECCCCCCC
Confidence 344699999888777655334678888853 22111111 111 11011112455542 467899998777766
Q ss_pred chhHH--------HHHHHHHHHHHHhCCceEEEEeccCc
Q 027838 95 KGMMV--------EYAKNLADFAAASGNKHVVVLSALDF 125 (218)
Q Consensus 95 ~~~~~--------~F~~~L~~wi~~~~~~~VI~Lss~~a 125 (218)
++..+ +..+++++-+++.+++.++++-+-+.
T Consensus 119 ~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv 157 (350)
T PLN02602 119 PGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV 157 (350)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch
Confidence 65433 35777888899999999999988765
No 25
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=29.28 E-value=99 Score=29.99 Aligned_cols=38 Identities=29% Similarity=0.354 Sum_probs=29.8
Q ss_pred cCCCCCEEEEcccCccchHHHHHHHHHhccCCeEEEEEecC
Q 027838 11 LSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (218)
Q Consensus 11 ~~l~~~tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~ 51 (218)
.+++|.|+++ -|.||||+-|+.+|. .++.+-|+--|+.
T Consensus 233 ~~l~Gk~VaV--qG~GnVg~~aa~~L~-e~GakVVavSD~~ 270 (454)
T PTZ00079 233 DSLEGKTVVV--SGSGNVAQYAVEKLL-QLGAKVLTMSDSD 270 (454)
T ss_pred CCcCCCEEEE--ECCCHHHHHHHHHHH-HCCCEEEEEEcCC
Confidence 3577877554 466999999999996 5899999777666
No 26
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=28.37 E-value=56 Score=29.48 Aligned_cols=148 Identities=15% Similarity=0.179 Sum_probs=84.5
Q ss_pred cccCccchHHHHHHHHHhccCC-eEEEEEecCCcccccccCCCCCCCCCCcceeeEeeeeCCCcEEEEEEccCCCchhHH
Q 027838 21 PALSIGNVGQLAVDLLVSSTGA-ETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMV 99 (218)
Q Consensus 21 p~~svGnVGqLAvDlLI~sl~~-~~vG~lds~~lpPvvg~~~y~~~~~g~l~tp~EvY~s~~~~i~vlqqRsPi~~~~~~ 99 (218)
|=|++|..|. =+|.++++ ++.|.++.. +-++-.|..+..-.|+.+.|+|==+ -..++++-+--+..-...+
T Consensus 90 PepGvGCAGR----GVitai~~Le~lgaf~~~--~DvviyDVLGDVVCGGFAmPiReg~--AdeiyIVtSge~MalYAAN 161 (278)
T COG1348 90 PEPGVGCAGR----GVITAINLLEELGAFEED--LDVVIYDVLGDVVCGGFAMPIREGY--ADEIYIVTSGEMMALYAAN 161 (278)
T ss_pred CCCCCCcccc----hHHHHHHHHHHhCCcccc--CCEEEEeccCceeecceeeehhccc--CcEEEEEecCchHHHHHHH
Confidence 4477776654 23334332 566666554 5566555554444689999988433 3568887777777777788
Q ss_pred HHHHHHHHHHHHhCC--ceEEEEeccCcccccccc----CCCCCeEEEEeccCCCChhhHHHHhCCccccccCccccchh
Q 027838 100 EYAKNLADFAAASGN--KHVVVLSALDFGRLQRID----MSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWK 173 (218)
Q Consensus 100 ~F~~~L~~wi~~~~~--~~VI~Lss~~a~~r~~~~----~~~~p~~y~~~s~~~~~~~~~le~Lg~~~l~~~~~~~~~~~ 173 (218)
+.++-|.+|++..++ .-||+=+-.-..+++-++ .-+++.++.+- -+....+.|--+-+..|..+.++. .+
T Consensus 162 NI~kgi~k~a~~~~~rLgGiIcNsr~~~~e~e~v~~fa~~igt~li~~vP---r~~ivq~aE~~~kTvie~~P~s~~-a~ 237 (278)
T COG1348 162 NIAKGIRKYAKTGGVRLGGIICNSRSVDRERELVEAFAERLGTQLIHFVP---RDNIVQKAELNGKTVIEYAPDSNQ-AE 237 (278)
T ss_pred HHHHHHHHHhhcCCcceeeEEecCCCcccHHHHHHHHHHHhCCceEeecc---chHHHHHHHHcCcchhhhCcchhH-HH
Confidence 999999999998875 344432222111111111 01456666663 222444555555555565544443 35
Q ss_pred hhhhhhc
Q 027838 174 YLSSLAE 180 (218)
Q Consensus 174 ~l~~~~~ 180 (218)
+..+|++
T Consensus 238 ~yr~LA~ 244 (278)
T COG1348 238 EYRELAK 244 (278)
T ss_pred HHHHHHH
Confidence 5555554
No 27
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=27.62 E-value=98 Score=25.28 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=25.4
Q ss_pred ccCCCCCEEEEcccCccchHHHHHHHHHhccCCeEEEE
Q 027838 10 HLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGY 47 (218)
Q Consensus 10 ~~~l~~~tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~ 47 (218)
..++.|.|+ +.+|.|++|+-.+..+- .++|+-+++
T Consensus 31 ~~~l~g~tv--gIiG~G~IG~~vA~~l~-~fG~~V~~~ 65 (178)
T PF02826_consen 31 GRELRGKTV--GIIGYGRIGRAVARRLK-AFGMRVIGY 65 (178)
T ss_dssp BS-STTSEE--EEESTSHHHHHHHHHHH-HTT-EEEEE
T ss_pred ccccCCCEE--EEEEEcCCcCeEeeeee-cCCceeEEe
Confidence 345777765 67889999999999885 899955544
No 28
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=27.24 E-value=1e+02 Score=24.26 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=34.2
Q ss_pred eeEeeeeCCCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCceEEEEec
Q 027838 73 PLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSA 122 (218)
Q Consensus 73 p~EvY~s~~~~i~vlqqRsPi~~~~~~~F~~~L~~wi~~~~~~~VI~Lss 122 (218)
=+|+...++.++.+.+-....-.-...+..+++.+|+.++. +++|+|+=
T Consensus 44 Dlrv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~p-~E~VIl~~ 92 (146)
T PF00388_consen 44 DLRVWDGNDGELVVYHGITSTSGITFEDVLNDIRDFLFEHP-SEPVILSL 92 (146)
T ss_dssp EEEEEEETTSSEEEEETTSEE-EEEHHHHHHHHHHHTTHST-TS-EEEEE
T ss_pred EEEEEcCCCCceEEEeCCEeeeeEeHHHHHHHHHHHHhcCC-CeEEEEEe
Confidence 46677666666888876665545667889999999999877 46656643
No 29
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=26.86 E-value=1.9e+02 Score=20.59 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=30.1
Q ss_pred eeeeCCCcEEEEEEccCCCc---hhHHHHHHHHHHHHHHhCCc
Q 027838 76 AYESSSSGLTLIQQRSPVVK---GMMVEYAKNLADFAAASGNK 115 (218)
Q Consensus 76 vY~s~~~~i~vlqqRsPi~~---~~~~~F~~~L~~wi~~~~~~ 115 (218)
-|...++.+.+....+|.-- |....+++..++|++++|.+
T Consensus 15 ~Y~~~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~k 57 (78)
T PF14542_consen 15 TYREDGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLK 57 (78)
T ss_dssp EEEESSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-E
T ss_pred EEEeCCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCE
Confidence 34546677888788887653 78899999999999999884
No 30
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=26.33 E-value=1.2e+02 Score=18.13 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.1
Q ss_pred chhHHHHHHHHHHHHHHhCCceEEE
Q 027838 95 KGMMVEYAKNLADFAAASGNKHVVV 119 (218)
Q Consensus 95 ~~~~~~F~~~L~~wi~~~~~~~VI~ 119 (218)
++....+.+.+.+|+.+.++++|.+
T Consensus 40 ~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 40 KGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred cCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 4677889999999999999988853
No 31
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=26.04 E-value=1.2e+02 Score=26.29 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=28.4
Q ss_pred CCCCCEEEEcccCccchHHHHHHHHHhccCCeEEEEEecC
Q 027838 12 SESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (218)
Q Consensus 12 ~l~~~tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~ 51 (218)
++++.+++ ..|.||||+=++.+|. ..+++-||-.|+.
T Consensus 28 ~l~~~~v~--I~G~G~VG~~~a~~L~-~~g~~vv~v~D~~ 64 (227)
T cd01076 28 GLAGARVA--IQGFGNVGSHAARFLH-EAGAKVVAVSDSD 64 (227)
T ss_pred CccCCEEE--EECCCHHHHHHHHHHH-HCCCEEEEEECCC
Confidence 45666544 3467999999999986 5699999988875
No 32
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=25.67 E-value=86 Score=26.95 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=29.2
Q ss_pred CCCCCEEEEcccCccchHHHHHHHHHhccCCeEEEEEecCC
Q 027838 12 SESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQF 52 (218)
Q Consensus 12 ~l~~~tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~~ 52 (218)
++++.+++ ..|.||||+-++.+|.+ .+.+.|+-.|+..
T Consensus 20 ~l~g~~va--IqGfGnVG~~~a~~L~~-~G~~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVA--VQGLGNVGWGLAKKLAE-EGGKVLAVSDPDG 57 (217)
T ss_pred CcCCCEEE--EECCCHHHHHHHHHHHH-cCCEEEEEEcCCC
Confidence 45666543 35789999999999974 5899999888763
No 33
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=25.24 E-value=1.3e+02 Score=22.70 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhCCceEEEEeccCccccccccCCCCCeEEEEeccCCCChhhHHHHhCCcccc
Q 027838 99 VEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQ 163 (218)
Q Consensus 99 ~~F~~~L~~wi~~~~~~~VI~Lss~~a~~r~~~~~~~~p~~y~~~s~~~~~~~~~le~Lg~~~l~ 163 (218)
...+...+..+++.+.+.||++|.....-|.-...+..-.++.+++ ++.....|. |-|....
T Consensus 2 eaia~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~RP~~pIiavt~--~~~~~r~l~-l~~GV~p 63 (117)
T PF02887_consen 2 EAIARAAVELAEDLNAKAIVVFTESGRTARLISKYRPKVPIIAVTP--NESVARQLS-LYWGVYP 63 (117)
T ss_dssp HHHHHHHHHHHHHHTESEEEEE-SSSHHHHHHHHT-TSSEEEEEES--SHHHHHHGG-GSTTEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCeEEEEcC--cHHHHhhhh-cccceEE
Confidence 3567778999999999999999988765554444455567888875 444444554 5555543
No 34
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=25.22 E-value=2.1e+02 Score=20.70 Aligned_cols=39 Identities=8% Similarity=0.160 Sum_probs=32.8
Q ss_pred CCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCceEEE
Q 027838 81 SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVV 119 (218)
Q Consensus 81 ~~~i~vlqqRsPi~~~~~~~F~~~L~~wi~~~~~~~VI~ 119 (218)
..++++++..-|+.-+....|.+.+.+++.+.+.+.||+
T Consensus 6 ~~~~~vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vil 44 (106)
T TIGR02886 6 KGDVLIVRLSGELDHHTAERVRRKIDDAIERRPIKHLIL 44 (106)
T ss_pred ECCEEEEEEecccchhhHHHHHHHHHHHHHhCCCCEEEE
Confidence 357999999999999999999999999987666666655
No 35
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=24.73 E-value=2.3e+02 Score=24.11 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=33.0
Q ss_pred eeEeeeeC-CCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCceEEEEecc
Q 027838 73 PLQAYESS-SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSAL 123 (218)
Q Consensus 73 p~EvY~s~-~~~i~vlqqRsPi~~~~~~~F~~~L~~wi~~~~~~~VI~Lss~ 123 (218)
=+|++... +.++.+.+.-...-.....++.+++.+|++++. +++|+|.=-
T Consensus 55 dlr~~~~~~~~~~~~~H~~~~~~~~~~~~vL~~i~~fl~~~p-~E~vil~~~ 105 (271)
T cd08557 55 DLRVAYDPDDGDLYVCHGLFLLNGQTLEDVLNEVKDFLDAHP-SEVVILDLE 105 (271)
T ss_pred EEEeeeecCCCcEEEEccccccCcccHHHHHHHHHHHHHHCC-CcEEEEEEE
Confidence 34455443 356666544333324667899999999999987 788887543
No 36
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=23.92 E-value=72 Score=26.61 Aligned_cols=19 Identities=42% Similarity=0.431 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCceEEEEec
Q 027838 104 NLADFAAASGNKHVVVLSA 122 (218)
Q Consensus 104 ~L~~wi~~~~~~~VI~Lss 122 (218)
+|++++++.+.++||+|||
T Consensus 181 ~l~~~~~~~~~~~vv~lSG 199 (228)
T cd07389 181 RLLDLLAKRKIKNVVFLSG 199 (228)
T ss_pred HHHHHHHHhCCCCeEEEec
Confidence 3778889999999999999
No 37
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=22.97 E-value=1.1e+02 Score=25.02 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhCCceEEEEeccC
Q 027838 101 YAKNLADFAAASGNKHVVVLSALD 124 (218)
Q Consensus 101 F~~~L~~wi~~~~~~~VI~Lss~~ 124 (218)
..+....-+++.||++|+++|+=.
T Consensus 72 ~L~~w~~~l~~~GFkhV~~lT~D~ 95 (142)
T PF10673_consen 72 RLNDWCEELKESGFKHVFYLTSDS 95 (142)
T ss_pred HHHHHHHHHHhcCCcEEEEEecCc
Confidence 344445557789999999999853
No 38
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=21.75 E-value=95 Score=28.70 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=28.3
Q ss_pred EEEcccCccchHHHHHHHHHhccCCeEEEEEecC
Q 027838 18 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (218)
Q Consensus 18 LI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~ 51 (218)
+=++.+|.||+|+-.+..+...-+++-+|-++..
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~ 37 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR 37 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC
Confidence 3356688899999999988887789999988876
No 39
>PLN02306 hydroxypyruvate reductase
Probab=21.58 E-value=94 Score=29.21 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=26.8
Q ss_pred CCCCCEEEEcccCccchHHHHHHHHHhccCCeEEEE
Q 027838 12 SESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGY 47 (218)
Q Consensus 12 ~l~~~tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~ 47 (218)
++.|.| ++.+|.|++|+-.+..+...++|+-+++
T Consensus 162 ~L~gkt--vGIiG~G~IG~~vA~~l~~~fGm~V~~~ 195 (386)
T PLN02306 162 LLKGQT--VGVIGAGRIGSAYARMMVEGFKMNLIYY 195 (386)
T ss_pred CCCCCE--EEEECCCHHHHHHHHHHHhcCCCEEEEE
Confidence 466665 4568899999999999877899976654
No 40
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=21.24 E-value=2.3e+02 Score=20.60 Aligned_cols=77 Identities=9% Similarity=0.097 Sum_probs=47.9
Q ss_pred CcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCceEEE-EeccCcccc----------ccccCCCCCeEEEEeccCCCCh
Q 027838 82 SGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVV-LSALDFGRL----------QRIDMSSGPQIYYLSSTSVDGT 150 (218)
Q Consensus 82 ~~i~vlqqRsPi~~~~~~~F~~~L~~wi~~~~~~~VI~-Lss~~a~~r----------~~~~~~~~p~~y~~~s~~~~~~ 150 (218)
.+++++...-|+.-+....|.+.+.+.+.+.+.+.||+ +++.+...- .... ..+-.++..+. .+..
T Consensus 9 ~~~~v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~-~~g~~l~l~g~--~~~v 85 (109)
T cd07041 9 DGVLVLPLIGDLDDERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALR-LLGARTILTGI--RPEV 85 (109)
T ss_pred CCEEEEeeeeeECHHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHH-HcCCeEEEEeC--CHHH
Confidence 35788888889999999999999988888777777765 344332110 0111 12334555543 3445
Q ss_pred hhHHHHhCCcc
Q 027838 151 DDYCEQLGWKR 161 (218)
Q Consensus 151 ~~~le~Lg~~~ 161 (218)
.+.++..|+..
T Consensus 86 ~~~l~~~gl~~ 96 (109)
T cd07041 86 AQTLVELGIDL 96 (109)
T ss_pred HHHHHHhCCCh
Confidence 56677776644
No 41
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=20.92 E-value=53 Score=23.80 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhCCceEEEEeccCc
Q 027838 99 VEYAKNLADFAAASGNKHVVVLSALDF 125 (218)
Q Consensus 99 ~~F~~~L~~wi~~~~~~~VI~Lss~~a 125 (218)
..+-..+.+++++.+.++|++++|..+
T Consensus 58 ~~l~~~~~~~l~~~~~~~v~iiGg~~~ 84 (92)
T PF04122_consen 58 NSLPSSVKAFLKSLNIKKVYIIGGEGA 84 (92)
T ss_pred CCCCHHHHHHHHHcCCCEEEEECCCCc
Confidence 334456677777778888888877654
No 42
>cd02406 CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast. CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH).
Probab=20.85 E-value=65 Score=27.52 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=35.7
Q ss_pred chHHHHHHHHHhccCCe----E----EEE--EecCCcccccccCCCCCCCCCCcceeeEeeeeCCCcEEEEEEccCCCch
Q 027838 27 NVGQLAVDLLVSSTGAE----T----VGY--LDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKG 96 (218)
Q Consensus 27 nVGqLAvDlLI~sl~~~----~----vG~--lds~~lpPvvg~~~y~~~~~g~l~tp~EvY~s~~~~i~vlqqRsPi~~~ 96 (218)
|||.+++|.|...+++. + ++. +....+. ++-|..|.......+...++-|.-+-.+++||+-+.-++.|
T Consensus 21 NiGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~-L~kP~TyMN~SG~aV~~~~~~yki~~~~ilVihDdldl~~G 99 (191)
T cd02406 21 NVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVL-LAKPQTYMNYSGESVGPLAAYYKVPLRHILVIYDDMSLPNG 99 (191)
T ss_pred hHHHHHHHHHHHHcCCCccccccceEEEEEEECCeEEE-EEeCCCchhcCHHHHHHHHHHhCCCHHHEEEEEECCCCCCC
Confidence 79999999999988653 1 111 1111111 23334454332222333344444344556776666666655
No 43
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=20.65 E-value=85 Score=29.56 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhCCceEEEEecc
Q 027838 102 AKNLADFAAASGNKHVVVLSAL 123 (218)
Q Consensus 102 ~~~L~~wi~~~~~~~VI~Lss~ 123 (218)
.++|++++++.+++.||+|||=
T Consensus 352 r~~Ll~~l~~~~~~~vV~LSGD 373 (453)
T PF09423_consen 352 RQRLLDFLRESGIRNVVFLSGD 373 (453)
T ss_dssp HHHHHHHHHHTT---EEEEE-S
T ss_pred HHHHHHHHHhhCCCCEEEEecC
Confidence 5569999999999999999993
No 44
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ].
Probab=20.60 E-value=1.5e+02 Score=23.29 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=27.0
Q ss_pred EccCCCchhHHHHHHHHHHHHH----HhCCceEEEEeccC
Q 027838 89 QRSPVVKGMMVEYAKNLADFAA----ASGNKHVVVLSALD 124 (218)
Q Consensus 89 qRsPi~~~~~~~F~~~L~~wi~----~~~~~~VI~Lss~~ 124 (218)
.+...-......|+++|++++. +.+|+++|+++.-.
T Consensus 62 ~~~~~~~~~~~~Fa~~vA~~L~~~~~~~~~~~LvlvA~p~ 101 (138)
T PF10116_consen 62 ERTDPKEEEEERFAREVADRLEKARRAGKFDRLVLVAPPR 101 (138)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEECHH
Confidence 3555566777889999999988 47788887776643
No 45
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.45 E-value=2.9e+02 Score=22.59 Aligned_cols=31 Identities=10% Similarity=0.069 Sum_probs=26.1
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhCCceEEEE
Q 027838 90 RSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120 (218)
Q Consensus 90 RsPi~~~~~~~F~~~L~~wi~~~~~~~VI~L 120 (218)
.-+.-....++|...+..|+.++++++|++-
T Consensus 38 ~~~~~~~~vr~Fq~~f~kl~~dy~Vd~VvIk 68 (138)
T PF11215_consen 38 SDDNSTEEVRKFQFTFAKLMEDYKVDKVVIK 68 (138)
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3455567788999999999999999999864
No 46
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=20.25 E-value=1.8e+02 Score=22.88 Aligned_cols=91 Identities=24% Similarity=0.285 Sum_probs=54.0
Q ss_pred CccchHHHHHHHHHhccCCeEEEEEecCC-ccc------ccccCCCCCCCCCCcceeeEeeeeCCCcEEEEEEccCCCch
Q 027838 24 SIGNVGQLAVDLLVSSTGAETVGYLDDQF-VLP------CVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKG 96 (218)
Q Consensus 24 svGnVGqLAvDlLI~sl~~~~vG~lds~~-lpP------vvg~~~y~~~~~g~l~tp~EvY~s~~~~i~vlqqRsPi~~~ 96 (218)
+.|.||+..+..|+.+- .+-++...++. +.. +.+ |.. ....+...+. +-+.++... .|-..
T Consensus 6 atG~vG~~l~~~L~~~~-~~V~~~~R~~~~~~~~~~~~~~~~-d~~---d~~~~~~al~-----~~d~vi~~~-~~~~~- 73 (183)
T PF13460_consen 6 ATGFVGRALAKQLLRRG-HEVTALVRSPSKAEDSPGVEIIQG-DLF---DPDSVKAALK-----GADAVIHAA-GPPPK- 73 (183)
T ss_dssp TTSHHHHHHHHHHHHTT-SEEEEEESSGGGHHHCTTEEEEES-CTT---CHHHHHHHHT-----TSSEEEECC-HSTTT-
T ss_pred CCChHHHHHHHHHHHCC-CEEEEEecCchhccccccccccee-eeh---hhhhhhhhhh-----hcchhhhhh-hhhcc-
Confidence 57999999999999774 66666666543 221 111 000 0001111111 223333222 22222
Q ss_pred hHHHHHHHHHHHHHHhCCceEEEEeccCccc
Q 027838 97 MMVEYAKNLADFAAASGNKHVVVLSALDFGR 127 (218)
Q Consensus 97 ~~~~F~~~L~~wi~~~~~~~VI~Lss~~a~~ 127 (218)
....++.+++-+++.|++++|++|+.....
T Consensus 74 -~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~ 103 (183)
T PF13460_consen 74 -DVDAAKNIIEAAKKAGVKRVVYLSSAGVYR 103 (183)
T ss_dssp -HHHHHHHHHHHHHHTTSSEEEEEEETTGTT
T ss_pred -cccccccccccccccccccceeeeccccCC
Confidence 378888999999999999999999987654
No 47
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=20.23 E-value=2.8e+02 Score=24.27 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=73.8
Q ss_pred CCEEEEcccCccchHHHHHHHHHhccCCeEEEEEecCCc-ccccccCCCC-CCCCCCcceeeEeeeeCCCcEEEE-EEc-
Q 027838 15 CSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFV-LPCVGNDAYR-PSPRGDLALPLQAYESSSSGLTLI-QQR- 90 (218)
Q Consensus 15 ~~tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~~l-pPvvg~~~y~-~~~~g~l~tp~EvY~s~~~~i~vl-qqR- 90 (218)
.+.+|+|+ .|.+|.--+.|+.++-.+.+|-.|--..+ -|.++-..-. ...-..+.--++-+++++-.++.+ -.|
T Consensus 19 ~s~fvlGA--tG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at~k~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgTTRg 96 (238)
T KOG4039|consen 19 MSGFVLGA--TGLCGGGLLKHAQEAPQFSKVYAILRRELPDPATDKVVAQVEVDFSKLSQLATNEQGPDVLFCALGTTRG 96 (238)
T ss_pred cceEEEec--cccccHHHHHHHHhcccceeEEEEEeccCCCccccceeeeEEechHHHHHHHhhhcCCceEEEeeccccc
Confidence 34678775 67889999999999999998877765542 2222110000 000001111111122221111111 011
Q ss_pred -cCC--CchhHHHHHHHHHHHHHHhCCceEEEEeccCccccccccCCCCCeEEEEeccCCCChhhHHHHhCCccc
Q 027838 91 -SPV--VKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRL 162 (218)
Q Consensus 91 -sPi--~~~~~~~F~~~L~~wi~~~~~~~VI~Lss~~a~~r~~~~~~~~p~~y~~~s~~~~~~~~~le~Lg~~~l 162 (218)
+-. .-..-..+.=.+++-+++.|.+.++++||..|.. ++.+.|.-. -.+..+...+|++..+
T Consensus 97 kaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~-------sSrFlY~k~---KGEvE~~v~eL~F~~~ 161 (238)
T KOG4039|consen 97 KAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADP-------SSRFLYMKM---KGEVERDVIELDFKHI 161 (238)
T ss_pred ccccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCCc-------ccceeeeec---cchhhhhhhhccccEE
Confidence 110 0112346777889999999999999999987654 133444422 3334566788877663
Done!