Query 027838
Match_columns 218
No_of_seqs 150 out of 270
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 18:08:08 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/027838.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2206-2209//hhsearch_pdb/027838hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g4s_P Proteasome assembly cha 1.0 1 1 291.2 8.5 197 16-215 4-216 (269)
2 3gaa_A Uncharacterized protein 1.0 1 1 181.6 13.8 159 4-176 15-173 (252)
3 2p90_A Hypothetical protein CG 1.0 1 1 129.7 10.5 126 12-144 22-158 (319)
4 3mnf_A PAC2 family protein; PS 1.0 1 1 117.9 13.3 130 12-159 2-149 (250)
5 3e35_A Uncharacterized protein 1.0 1 1 112.8 7.7 124 11-144 24-161 (325)
6 2wam_A RV2714, conserved hypot 1.0 1 1 111.5 10.4 123 13-144 63-198 (351)
7 3abd_A Mitotic spindle assembl 1.0 1 1 20.6 2.8 45 80-124 62-107 (227)
8 2vfx_A Mitotic spindle assembl 1.0 1 1 20.0 2.8 44 81-124 49-93 (206)
9 4aez_B MAD2, mitotic spindle c 1.0 1 1 20.0 2.8 44 81-124 47-91 (203)
10 1gtm_A Glutamate dehydrogenase 1.0 1 1 18.9 4.7 37 13-51 210-246 (419)
No 1
>4g4s_P Proteasome assembly chaperone 2; alpha beta, NTN-hydrolase, peptide binding, hydrolase-chaper complex; HET: LDZ; 2.49A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=291.18 Aligned_cols=197 Identities=20% Similarity=0.228 Sum_probs=150.5
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHCC--CCEEEEEEECCCCCCCCCCCCCCCC--------CCCCCCEEEEEEEECCCCEE
Q ss_conf 8798734686556899999998306--9908999846996530004889999--------99971000476451898389
Q 027838 16 SNLILPALSIGNVGQLAVDLLVSST--GAETVGYLDDQFVLPCVGNDAYRPS--------PRGDLALPLQAYESSSSGLT 85 (218)
Q Consensus 16 ~tLI~p~~siGnVGqLAvDlLI~sl--~~~~vG~i~s~~lpPvvg~~~y~~~--------~~g~l~tp~eiY~s~~~~i~ 85 (218)
+|||+|++|+|||||||+||||+|| +++|||++++++++|+|||++|..+ +.++++|++|||++++++++
T Consensus 4 stLIlP~VSvGNVgQLavDLLI~tl~~~~~kVG~l~~~~l~P~vGp~~~~~~~~~~~~~~~~~~lsta~EvY~~~~~~l~ 83 (269)
T 4g4s_P 4 SCLVLPLVSVGNIPQLSIDWLLNSQANEWEYLEALDSKYLVEFVGPLDRPEDGSDSLYKDADMKYSSALEVFYNKKRGLF 83 (269)
T ss_dssp CEEEEECCCGGGHHHHHHHHHHHHTCSSEEEEEECCCTTBCCCEECCCCBSSSCCCSCCCTTCCCEESEEEEEETTTTEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEE
T ss_conf 37997313316699999999986275563478994578625205785333556665566776645566888874888789
Q ss_pred EEEECCCCCCH-HHHH-HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCC
Q ss_conf 99971677730-2899-999999999982995699970157542111357988808997436788814688771972122
Q 027838 86 LIQQRSPVVKG-MMVE-YAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQ 163 (218)
Q Consensus 86 vlq~rsPi~~~-~~~~-F~~~l~~wi~~~g~~~VI~Lss~~a~~r~~~~~~~~p~~y~lss~~~~~~~~~le~Lg~~~le 163 (218)
||||||||+++ +... |++.|++|+++.+|++||+|+|++++.|+|.++++.+.+|.+++.. ..+..+.+++..++
T Consensus 84 viQqRSPii~~~~~~~~f~e~L~~~i~~~~f~~VivLsS~~a~~r~d~~~~~~~~~y~~~~~~---~~~~~~~l~~l~l~ 160 (269)
T 4g4s_P 84 AIQQRTPLVSVNYLNNFIVEIILPFLSKYNISEICIWDSLYAMEDENGVIVRPQEVYSLGEFY---FDDEAELLSNLHLN 160 (269)
T ss_dssp EEEECSCBSCGGGHHHHHHHHHHHHHHGGGCSEEEEECCBCCC-------------------------------------
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHCCCCCEEEECCCCC---CCHHHHHHCCCCCC
T ss_conf 999724534552456999999999999759877999815761105502206873477336100---43167774436651
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCC--CCCHHHHHHHHHH
Q ss_conf 258565550133443239988889--988744221256689--9718999986420
Q 027838 164 EYNPAQRGWKYLSSLAEGDVGDEN--NFTFEDDLEEEDYYP--SLPFAALFSCFKH 215 (218)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~lp~a~l~~~~~~ 215 (218)
+.....++|............... .+++...++...+.+ ..|+++|+.||.|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~L~~fcsE 216 (269)
T 4g4s_P 161 DQESMVNNWLHFTPTSFQDKISVDQPIFKILFQILNASQRPKALRSIKYCSCLANE 216 (269)
T ss_dssp ----------------------CCHHHHHHTTC------------CEECCCCBCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEC
T ss_conf 23333445545676333444456775167899998630210356645799999536
No 2
>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophi structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum}
Probab=1.00 E-value=1 Score=181.61 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=132.5
Q ss_pred EECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 21579656779987987346865568999999983069908999846996530004889999999710004764518983
Q 027838 4 VLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSG 83 (218)
Q Consensus 4 ~~~~~~~~~l~~~tLI~p~~siGnVGqLAvDlLI~sl~~~~vG~i~s~~lpPvvg~~~y~~~~~g~l~tp~eiY~s~~~~ 83 (218)
+.+..+.+++++++||.|++|+||||++|+||||++|++++||+++++++||++... +|.+.+|+|+|.+.+++
T Consensus 15 ~~~~~~~~~l~~pvlI~gf~gaG~vg~lA~~hLi~~l~~~~vg~id~~~lPp~v~~~------dg~~~~P~~ly~~~~~~ 88 (252)
T 3gaa_A 15 QVMELEKRNYNNPVVLCGFAGSTPTGVLAASYIVETLGMHQVAHLISQHIPPVAVFV------GGKLRHPFRIYANNSNT 88 (252)
T ss_dssp HHTTCGGGGCCSCEEEEECCCSSSHHHHHHHHHHHHHTCEEEEECCCTTSCCCEECG------GGCCBCSEEEEECTTSC
T ss_pred EEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEC------CCEEECCEEEEEECCCC
T ss_conf 898525777779899995777238999999999997398599998168889579957------98683366999988999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCC
Q ss_conf 89999716777302899999999999982995699970157542111357988808997436788814688771972122
Q 027838 84 LTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQ 163 (218)
Q Consensus 84 i~vlq~rsPi~~~~~~~F~~~l~~wi~~~g~~~VI~Lss~~a~~r~~~~~~~~p~~y~lss~~~~~~~~~le~Lg~~~le 163 (218)
+++++++.|+++...++|++++++|+++.|+++||+|+|+++... ...|.+|++ + +....+.++++|+..++
T Consensus 89 llll~g~~p~p~~~~~~f~~~vl~~~~~~gv~~vv~Lgg~~~~~~-----~~~p~v~~~-t--~~~l~~~l~~~g~~~~~ 160 (252)
T 3gaa_A 89 VLVAMCEVPISSAHIYEISNTLMNWIDQVGASEIVIMEGSPANGI-----PEERPVFAV-A--EKPKLDKFKKAGIQPAD 160 (252)
T ss_dssp EEEEEESSCCCGGGHHHHHHHHHHHHHHHTCSEEEEEEEEEESCC-----CSSCCCEEE-C--CHHHHHHHHHTTCEECC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC-----CCCCCEEEE-C--CHHHHHHHHHCCCCCCC
T ss_conf 999991688984799999999999999809988999816527887-----888866998-1--98998889864986167
Q ss_pred CCCCCCCCHHHHH
Q ss_conf 2585655501334
Q 027838 164 EYNPAQRGWKYLS 176 (218)
Q Consensus 164 ~~~~~~~~~~~l~ 176 (218)
.-.+.+--...+.
T Consensus 161 ~g~i~G~~g~Ll~ 173 (252)
T 3gaa_A 161 SAIIAGMGGGILN 173 (252)
T ss_dssp CSEECHHHHHHHH
T ss_pred CCCCCCHHHHHHH
T ss_conf 8873788999999
No 3
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=1.00 E-value=1 Score=129.66 Aligned_cols=126 Identities=9% Similarity=0.048 Sum_probs=98.3
Q ss_pred CCCCCEE---EECCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCC-------CCCCCCCCCCCCCCCCCCEEEEEEEECC
Q ss_conf 7799879---87346865568999999983069908999846996-------5300048899999997100047645189
Q 027838 12 SESCSNL---ILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFV-------LPCVGNDAYRPSPRGDLALPLQAYESSS 81 (218)
Q Consensus 12 ~l~~~tL---I~p~~siGnVGqLAvDlLI~sl~~~~vG~i~s~~l-------pPvvg~~~y~~~~~g~l~tp~eiY~s~~ 81 (218)
+.++++| |.|++++|+||++|++||+++|++++||+|+++++ ||++-.+. ...+...+++|+|..++
T Consensus 22 ~~~~pvli~a~eG~~daG~vg~iA~~hLi~~l~~~~va~id~d~l~Dy~~~RP~v~~~~d---~~~~~~~p~~~ly~~~~ 98 (319)
T 2p90_A 22 TAGGPTLIVALQGYADAGHAVESSSSHLMDALDHRLIASFNNDELIDYRSRRPVVVIEHN---EVTSMDELNLGLHVVRD 98 (319)
T ss_dssp SSSCCEEEEEEESSSBGGGHHHHHHHHHHHHSCEEEEEEECHHHHCBHHHHCCCEEECSS---SEEEECCCCCEEEEEEC
T ss_pred CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECHHCCCCCCCCCCEEEECC---CCCCCCCCCEEEEEECC
T ss_conf 678988989745177760899999999999759849999965110325478996899889---64420168769999647
Q ss_pred -CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf -838999971677730289999999999998299569997015754211135798880899743
Q 027838 82 -SGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSS 144 (218)
Q Consensus 82 -~~i~vlq~rsPi~~~~~~~F~~~l~~wi~~~g~~~VI~Lss~~a~~r~~~~~~~~p~~y~lss 144 (218)
.+.-+++.++|+++...++|+++|++|+++.|+++||+|+|+++..-.. ....+++.++
T Consensus 99 ~~g~~~lll~gpeP~~~w~~f~~~vl~~a~~~gV~~vv~Lggl~~~~pht----rp~~V~~~at 158 (319)
T 2p90_A 99 NDNKPFLMLSGPEPDLRWGDFSNAVVDLVEKFGVENTICLYAAPMTVPHT----RPTVVTAHGN 158 (319)
T ss_dssp TTCCEEEEEEEECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEEESCCTT----SCCCEEEEES
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC----CCCCEEEEEC
T ss_conf 89981899978898589999999999999981998899981744898877----8777599968
No 4
>3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.97A {Streptomyces avermitilis}
Probab=1.00 E-value=1 Score=117.92 Aligned_cols=130 Identities=21% Similarity=0.191 Sum_probs=98.7
Q ss_pred CCCCCEEEECCCCC---CCHHHHHHHHHHHCCCCEEEEEEECCCC------CCCCCCCCCCCCCCCC--C---CEEEEEE
Q ss_conf 77998798734686---5568999999983069908999846996------5300048899999997--1---0004764
Q 027838 12 SESCSNLILPALSI---GNVGQLAVDLLVSSTGAETVGYLDDQFV------LPCVGNDAYRPSPRGD--L---ALPLQAY 77 (218)
Q Consensus 12 ~l~~~tLI~p~~si---GnVGqLAvDlLI~sl~~~~vG~i~s~~l------pPvvg~~~y~~~~~g~--l---~tp~eiY 77 (218)
++++++||.+++|+ |+||.+|++||+++|++++||+|+++.+ ||++. +. +|. + .+.+++|
T Consensus 2 ~l~~pvlI~gf~G~~DAG~vg~~a~~hL~~~l~~~~va~id~d~~~dy~~~rP~v~---~~---~g~~~~~~p~~~~~~~ 75 (250)
T 3mnf_A 2 NAIDPVMVAAFEGWNDAGDAASTAVAHLDREWKGEVFAALDAEDYYDFQVNRPTVW---LD---GGVRKITWPTTRLSVV 75 (250)
T ss_dssp ---CCEEEEEEESTTBTTSHHHHHHHHHHHHTTCEEEEECCGGGTCCTTTSCCEEE---EE---TTEEEEECCCEEEEEE
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECHHCCCCCCCCCEEE---EE---CCEEEEECCCCEEEEE
T ss_conf 88887999958998766849999999999975985999996333055577898799---96---9988730487359999
Q ss_pred EECC---CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCC-EEEEEECCCCCCHHHH
Q ss_conf 5189---83899997167773028999999999999829956999701575421113579888-0899743678881468
Q 027838 78 ESSS---SGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGP-QIYYLSSTSVDGTDDY 153 (218)
Q Consensus 78 ~s~~---~~i~vlq~rsPi~~~~~~~F~~~l~~wi~~~g~~~VI~Lss~~a~~r~~~~~~~~p-~~y~lss~~~~~~~~~ 153 (218)
..++ ++++++....| ....++|++++++|+++.|+++||.|+|++....+ ..| .+++.++ . .+.
T Consensus 76 ~~~d~~~~~~lll~g~eP--~~~w~~f~~~vl~~a~~~gv~~iv~lgg~~~~~ph-----trp~~v~~~at--~---~~l 143 (250)
T 3mnf_A 76 RVGGEKPRDLVLVRGIEP--SMRWRSFCNELLAFAHELGVELVVVLGALLGDTPH-----TRPVPVSGVTS--D---PDL 143 (250)
T ss_dssp EEESSSEEEEEEEEEECC--SSCHHHHHHHHHHHHHHHTCCEEEEEEEEEESCCT-----TSCCCEEEEEC--C---HHH
T ss_pred ECCCCCCCCEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-----CCCCCEEEEEC--C---HHH
T ss_conf 527888996899977988--16899999999999998299789998375389988-----78765699989--9---899
Q ss_pred HHHHCC
Q ss_conf 877197
Q 027838 154 CEQLGW 159 (218)
Q Consensus 154 le~Lg~ 159 (218)
.+.++.
T Consensus 144 ~~~~~~ 149 (250)
T 3mnf_A 144 ARTMDL 149 (250)
T ss_dssp HHHSCC
T ss_pred HHHHHC
T ss_conf 876311
No 5
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=1.00 E-value=1 Score=112.85 Aligned_cols=124 Identities=12% Similarity=0.090 Sum_probs=97.9
Q ss_pred CCCCCCEEEECCCCC---CCHHHHHHHHHHHCCCCEEEEEEECCCC-------CCCCCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf 677998798734686---5568999999983069908999846996-------530004889999999710004764518
Q 027838 11 LSESCSNLILPALSI---GNVGQLAVDLLVSSTGAETVGYLDDQFV-------LPCVGNDAYRPSPRGDLALPLQAYESS 80 (218)
Q Consensus 11 ~~l~~~tLI~p~~si---GnVGqLAvDlLI~sl~~~~vG~i~s~~l-------pPvvg~~~y~~~~~g~l~tp~eiY~s~ 80 (218)
..+++++||.+++|+ |+||.+|++||+++|++++||.|+++.+ |++.-.+. ...+...+++++|..+
T Consensus 24 ~~l~~pvLI~af~G~~DAG~vg~~A~~hLi~~l~~~~va~~d~d~l~Dyr~~RP~v~~~~d---~~~~~~~P~~~ly~~~ 100 (325)
T 3e35_A 24 QESAGLVMLYHFDGYIDAGETGDQIVDQVLDSLPHQVVARFDHDRLVDYRARRPLLTFKRD---TWSDYEEPTIEVRLVQ 100 (325)
T ss_dssp HCTTCEEEEEEEESSCCGGGHHHHHHHHHHHHSCEEEEEEECHHHHSCTTTSCCCEEEETT---EEEEECCCCCEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEECC---CCEEEECCCEEEEEEC
T ss_conf 5668988999588987647799999999999759849999956324546678982899769---6136316986999963
Q ss_pred ---CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCC-EEEEEEC
Q ss_conf ---983899997167773028999999999999829956999701575421113579888-0899743
Q 027838 81 ---SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGP-QIYYLSS 144 (218)
Q Consensus 81 ---~~~i~vlq~rsPi~~~~~~~F~~~l~~wi~~~g~~~VI~Lss~~a~~r~~~~~~~~p-~~y~lss 144 (218)
+..++++.. |.+....++|++++++|+++.|++.||.|+|+++.... ..| .++..++
T Consensus 101 d~~~~~~llL~G--~eP~~~w~~f~~avl~~a~~~gV~~vv~Lggip~~vpH-----tRP~~V~~~at 161 (325)
T 3e35_A 101 DATGAPFLFLSG--PEPDVEWERFAAAVGQIVERLGVRLSVSFHGIPMGVPH-----TRPVGITPHGS 161 (325)
T ss_dssp CTTCCEEEEEEE--ECCSSCHHHHHHHHHHHHHHTTEEEEEEEEEEEESCCT-----TSCCCEEEEES
T ss_pred CCCCCCEEEEEC--CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-----CCCCEEEEEEC
T ss_conf 789980899979--99863599999999999998099789998274179887-----77720699859
No 6
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=1.00 E-value=1 Score=111.47 Aligned_cols=123 Identities=11% Similarity=0.004 Sum_probs=96.2
Q ss_pred CCCCEEEECCCC---CCCHHHHHHHHHHHCCCCEEEEEEECCCC-------CCCCCCCCCCCCCCCCCCEEEEEEEEC--
Q ss_conf 799879873468---65568999999983069908999846996-------530004889999999710004764518--
Q 027838 13 ESCSNLILPALS---IGNVGQLAVDLLVSSTGAETVGYLDDQFV-------LPCVGNDAYRPSPRGDLALPLQAYESS-- 80 (218)
Q Consensus 13 l~~~tLI~p~~s---iGnVGqLAvDlLI~sl~~~~vG~i~s~~l-------pPvvg~~~y~~~~~g~l~tp~eiY~s~-- 80 (218)
+++++||.+++| +|+||.+|++||+++|++++||.|+++.+ |+++-.+. ...+...++.++|...
T Consensus 63 l~~pvLI~gf~G~~DAG~vg~iA~~hLi~~L~~~~va~~d~d~~~Dyr~~RP~v~~~~d---g~~~~~~P~~~ly~~~d~ 139 (351)
T 2wam_A 63 GRGPVLVHALEGFSDAGHAIRLAAAHLKAALDTELVASFAIDELLDYRSRRPLMTFKTD---HFTHSDDPELSLYALRDS 139 (351)
T ss_dssp SCCCEEEEEEESSCCGGGHHHHHHHHHHHHSEEEEEEEECHHHHCBTTTSCCEEEEETT---EEEEECCCCEEEEEEECT
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECHHCCCCCCCCCCEEEECC---CCEEEECCCEEEEEECCC
T ss_conf 68988999588875416599999999999769839999810442655567983899869---742730786699996268
Q ss_pred -CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf -9838999971677730289999999999998299569997015754211135798880899743
Q 027838 81 -SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSS 144 (218)
Q Consensus 81 -~~~i~vlq~rsPi~~~~~~~F~~~l~~wi~~~g~~~VI~Lss~~a~~r~~~~~~~~p~~y~lss 144 (218)
+..++++.. |.+.....+|+++|++|+++.|++.||.|+|+++..... ....+++.++
T Consensus 140 ~g~~~LlL~G--~eP~~~w~~fa~~vl~~a~~~gV~~vvtLgglp~~vpht----Rp~~V~~~at 198 (351)
T 2wam_A 140 IGTPFLLLAG--LEPDLKWERFITAVRLLAERLGVRQTIGLGTVPMAVPHT----RPITMTAHSN 198 (351)
T ss_dssp TCCEEEEEEE--ECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEEESCCTT----SCCCEEEEES
T ss_pred CCCCEEEEEC--CCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC----CCCCEEEEEC
T ss_conf 9985899978--998268999999999999980998899981633899876----6765289978
No 7
>3abd_A Mitotic spindle assembly checkpoint protein MAD2B; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_C*
Probab=1.00 E-value=1 Score=20.58 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=38.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE-ECCC
Q ss_conf 89838999971677730289999999999998299569997-0157
Q 027838 80 SSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL-SALD 124 (218)
Q Consensus 80 ~~~~i~vlq~rsPi~~~~~~~F~~~l~~wi~~~g~~~VI~L-ss~~ 124 (218)
+.-++.+.++|-|-+..+.......+.+|+.+..++++++. .+.+
T Consensus 62 rky~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~v~klvlvI~~~~ 107 (227)
T 3abd_A 62 KKYNVPVQMSCHPELNQYIQDTLHCVKPLLEKNDVEKVVVVILDKE 107 (227)
T ss_dssp EETTEEEEEECCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECTT
T ss_pred HHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCC
T ss_conf 8418722775588799999999999999998396369999998499
No 8
>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus, mitosis, anaphase, cell cycle, CE division, spindle checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB: 2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A
Probab=1.00 E-value=1 Score=20.05 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=37.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE-ECCC
Q ss_conf 9838999971677730289999999999998299569997-0157
Q 027838 81 SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL-SALD 124 (218)
Q Consensus 81 ~~~i~vlq~rsPi~~~~~~~F~~~l~~wi~~~g~~~VI~L-ss~~ 124 (218)
.-++.+.++|.|-+..+.......+.+|+.+..++++++. .+.+
T Consensus 49 ~y~l~v~~sr~p~l~~YI~~~l~~l~~~L~~g~v~klvlvI~~~~ 93 (206)
T 2vfx_A 49 KYGLTLLVTTDLELIKYLNNVVEQLKDWLYKSSVQKLVVVISNIE 93 (206)
T ss_dssp ETTEEEEEECCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEETT
T ss_pred HCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECC
T ss_conf 759200575688899999999999999998585469999999489
No 9
>4aez_B MAD2, mitotic spindle checkpoint component MAD2; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=19.97 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=37.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE-ECCC
Q ss_conf 9838999971677730289999999999998299569997-0157
Q 027838 81 SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL-SALD 124 (218)
Q Consensus 81 ~~~i~vlq~rsPi~~~~~~~F~~~l~~wi~~~g~~~VI~L-ss~~ 124 (218)
.-++.+.++|-|-...+.......+.+|+.+..++++++. .+.+
T Consensus 47 ky~l~v~~sr~p~l~~YI~~~l~~v~~wL~~g~v~klvlvI~~~~ 91 (203)
T 4aez_B 47 KYGLNMLVSVDEEVKTYIRKIVSQLHKWMFAKKIQKLILVITSKC 91 (203)
T ss_dssp ETTEEEEEECCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEETT
T ss_pred HCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf 228320352588799999999999999998497318999997489
No 10
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A
Probab=1.00 E-value=1 Score=18.90 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=29.7
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 799879873468655689999999830699089998469
Q 027838 13 ESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (218)
Q Consensus 13 l~~~tLI~p~~siGnVGqLAvDlLI~sl~~~~vG~i~s~ 51 (218)
+++.|+ +..|.||||+-++.++...++|+-+++-|+.
T Consensus 210 l~gktv--gI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~ 246 (419)
T 1gtm_A 210 LKGKTI--AIQGYGNAGYYLAKIMSEDFGMKVVAVSDSK 246 (419)
T ss_dssp STTCEE--EEECCSHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred CCCCEE--EEECCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 589989--9986799999999998876599899995897
Done!