Query 027839
Match_columns 218
No_of_seqs 258 out of 1875
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 15:59:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 99.9 1.5E-25 3.2E-30 200.2 20.9 162 43-212 201-362 (367)
2 PLN00212 glutelin; Provisional 99.9 4E-23 8.6E-28 189.3 17.8 146 65-214 322-470 (493)
3 TIGR03404 bicupin_oxalic bicup 99.9 1.2E-21 2.5E-26 175.3 18.2 135 70-212 48-185 (367)
4 PF00190 Cupin_1: Cupin; Inte 99.9 1.8E-21 3.9E-26 152.7 12.1 127 67-206 9-143 (144)
5 smart00835 Cupin_1 Cupin. This 99.8 2.6E-19 5.6E-24 140.8 16.5 134 69-206 8-145 (146)
6 PLN00212 glutelin; Provisional 99.8 1.2E-18 2.6E-23 159.9 16.5 138 70-212 60-249 (493)
7 COG2140 Thermophilic glucose-6 99.8 6.7E-18 1.4E-22 138.2 12.4 152 52-215 49-202 (209)
8 PF07883 Cupin_2: Cupin domain 99.5 8.6E-14 1.9E-18 95.4 6.7 70 95-169 2-71 (71)
9 COG0662 {ManC} Mannose-6-phosp 99.5 1.1E-12 2.4E-17 100.9 11.8 82 89-175 34-115 (127)
10 COG1917 Uncharacterized conser 99.4 4.8E-12 1E-16 97.5 11.3 83 84-171 36-118 (131)
11 PRK13290 ectC L-ectoine syntha 99.4 6.8E-12 1.5E-16 96.3 11.3 80 89-176 33-114 (125)
12 PRK04190 glucose-6-phosphate i 99.3 3.5E-11 7.6E-16 98.6 13.3 89 85-173 62-158 (191)
13 COG3837 Uncharacterized conser 99.3 2.3E-11 5E-16 95.2 9.2 93 80-179 33-128 (161)
14 PRK11171 hypothetical protein; 99.2 3E-10 6.6E-15 97.8 14.8 79 88-171 58-137 (266)
15 PRK09943 DNA-binding transcrip 99.2 2.3E-10 5E-15 93.2 11.8 75 90-170 106-181 (185)
16 TIGR01479 GMP_PMI mannose-1-ph 99.2 1.9E-10 4.2E-15 106.3 12.4 78 90-172 375-452 (468)
17 PRK15460 cpsB mannose-1-phosph 99.2 2.3E-10 5E-15 105.8 12.2 79 89-172 383-461 (478)
18 PF01050 MannoseP_isomer: Mann 99.2 3.4E-10 7.3E-15 89.6 10.3 77 90-171 62-138 (151)
19 COG4101 Predicted mannose-6-ph 99.1 1.1E-09 2.4E-14 81.9 9.7 84 90-175 45-128 (142)
20 TIGR03214 ura-cupin putative a 99.0 4.9E-09 1.1E-13 90.0 12.1 77 90-171 57-134 (260)
21 PRK11171 hypothetical protein; 99.0 5.9E-09 1.3E-13 89.8 10.9 75 90-170 183-258 (266)
22 TIGR03214 ura-cupin putative a 99.0 5.2E-09 1.1E-13 89.9 10.5 74 90-169 178-252 (260)
23 PF02041 Auxin_BP: Auxin bindi 98.8 3.2E-08 7E-13 77.0 9.9 89 90-179 43-136 (167)
24 PF06560 GPI: Glucose-6-phosph 98.7 1.9E-07 4.1E-12 75.9 11.0 85 88-172 47-147 (182)
25 PRK13264 3-hydroxyanthranilate 98.7 1.4E-07 3.1E-12 76.0 9.1 75 96-174 39-113 (177)
26 TIGR03037 anthran_nbaC 3-hydro 98.7 1.8E-07 4E-12 74.2 9.6 72 99-174 36-107 (159)
27 PF02311 AraC_binding: AraC-li 98.5 5.6E-07 1.2E-11 67.6 8.2 64 100-169 12-75 (136)
28 PF11699 CENP-C_C: Mif2/CENP-C 98.5 9.5E-07 2.1E-11 63.3 8.4 73 90-168 11-84 (85)
29 PF03079 ARD: ARD/ARD' family; 98.4 2.6E-06 5.6E-11 67.9 10.2 68 103-171 84-151 (157)
30 PRK15457 ethanolamine utilizat 98.4 4.6E-06 9.9E-11 69.8 11.2 70 90-169 156-225 (233)
31 TIGR02451 anti_sig_ChrR anti-s 98.4 1.5E-06 3.2E-11 72.7 8.3 72 91-172 127-198 (215)
32 PF12973 Cupin_7: ChrR Cupin-l 98.4 7.4E-07 1.6E-11 64.4 5.4 66 90-167 23-88 (91)
33 PRK10371 DNA-binding transcrip 98.3 2.2E-06 4.8E-11 75.0 8.4 61 94-160 29-89 (302)
34 COG1791 Uncharacterized conser 98.3 6.6E-06 1.4E-10 65.5 9.6 69 105-175 89-157 (181)
35 PF14499 DUF4437: Domain of un 98.2 6.7E-06 1.4E-10 70.1 7.7 105 51-167 3-107 (251)
36 COG4297 Uncharacterized protei 98.2 6.6E-06 1.4E-10 63.3 6.9 64 104-170 56-119 (163)
37 PF06339 Ectoine_synth: Ectoin 98.1 3.7E-05 8.1E-10 58.4 10.1 83 87-175 31-113 (126)
38 TIGR02272 gentisate_1_2 gentis 98.1 1.2E-05 2.5E-10 71.4 7.9 75 91-170 81-155 (335)
39 PRK10296 DNA-binding transcrip 98.0 4.1E-05 8.9E-10 65.7 9.8 52 101-158 33-84 (278)
40 COG3257 GlxB Uncharacterized p 98.0 5.4E-05 1.2E-09 62.7 9.8 75 92-171 62-137 (264)
41 PRK13501 transcriptional activ 98.0 2.2E-05 4.8E-10 67.9 7.6 55 99-159 26-80 (290)
42 PF05523 FdtA: WxcM-like, C-te 98.0 4E-05 8.6E-10 59.3 8.0 71 97-169 39-110 (131)
43 TIGR02297 HpaA 4-hydroxyphenyl 97.9 2.7E-05 5.9E-10 66.9 7.3 59 101-164 33-91 (287)
44 PRK13500 transcriptional activ 97.9 4.3E-05 9.4E-10 67.0 8.5 55 100-160 57-111 (312)
45 PRK13503 transcriptional activ 97.9 3.9E-05 8.5E-10 65.5 7.1 53 100-158 24-76 (278)
46 PF06052 3-HAO: 3-hydroxyanthr 97.8 0.00022 4.8E-09 55.8 9.3 77 94-174 36-112 (151)
47 PRK13502 transcriptional activ 97.8 0.0001 2.2E-09 63.2 8.2 55 99-159 26-80 (282)
48 KOG2107 Uncharacterized conser 97.7 0.00011 2.4E-09 58.3 6.2 57 103-160 85-141 (179)
49 PF05899 Cupin_3: Protein of u 97.7 0.00019 4E-09 49.9 6.6 58 92-156 8-65 (74)
50 COG3435 Gentisate 1,2-dioxygen 97.6 0.00012 2.6E-09 63.4 6.4 91 75-170 71-166 (351)
51 PF05995 CDO_I: Cysteine dioxy 97.6 0.00094 2E-08 54.1 11.3 84 90-173 74-166 (175)
52 TIGR02272 gentisate_1_2 gentis 97.6 0.00037 8.1E-09 61.9 8.5 72 87-168 248-319 (335)
53 PF06249 EutQ: Ethanolamine ut 97.5 0.00051 1.1E-08 54.3 7.4 68 91-168 77-144 (152)
54 COG4766 EutQ Ethanolamine util 97.3 0.0023 5.1E-08 50.2 9.5 68 91-168 100-167 (176)
55 COG1898 RfbC dTDP-4-dehydrorha 97.1 0.0037 8.1E-08 50.5 8.4 68 100-167 54-130 (173)
56 TIGR01221 rmlC dTDP-4-dehydror 96.9 0.017 3.6E-07 46.9 10.7 78 99-176 52-139 (176)
57 COG3450 Predicted enzyme of th 96.9 0.007 1.5E-07 45.8 7.9 48 106-157 57-104 (116)
58 PF00908 dTDP_sugar_isom: dTDP 96.8 0.012 2.6E-07 47.8 9.5 77 99-175 51-138 (176)
59 COG3435 Gentisate 1,2-dioxygen 96.8 0.0042 9.2E-08 54.0 6.8 65 97-168 267-331 (351)
60 PF04209 HgmA: homogentisate 1 96.2 0.038 8.3E-07 50.6 9.7 106 52-168 87-195 (424)
61 PRK05341 homogentisate 1,2-dio 96.0 0.055 1.2E-06 49.6 9.6 59 104-168 146-204 (438)
62 TIGR01015 hmgA homogentisate 1 96.0 0.054 1.2E-06 49.5 9.5 71 104-179 140-212 (429)
63 PF13621 Cupin_8: Cupin-like d 95.9 0.051 1.1E-06 45.2 8.7 69 93-162 132-236 (251)
64 PF14499 DUF4437: Domain of un 95.9 0.0087 1.9E-07 51.2 3.7 76 91-171 171-246 (251)
65 PLN02658 homogentisate 1,2-dio 95.9 0.072 1.6E-06 48.8 9.7 57 106-168 141-197 (435)
66 PF12852 Cupin_6: Cupin 95.6 0.088 1.9E-06 42.4 8.6 44 112-158 35-78 (186)
67 PF07385 DUF1498: Protein of u 95.5 0.079 1.7E-06 44.3 7.9 70 96-167 92-184 (225)
68 PF02678 Pirin: Pirin; InterP 95.4 0.076 1.7E-06 39.6 6.9 64 101-168 39-105 (107)
69 COG3257 GlxB Uncharacterized p 95.4 0.19 4.1E-06 42.1 9.7 74 88-167 179-253 (264)
70 PF08007 Cupin_4: Cupin superf 95.3 0.17 3.6E-06 44.8 9.9 64 95-159 117-200 (319)
71 COG3806 ChrR Transcriptional a 95.3 0.097 2.1E-06 43.0 7.6 89 69-172 111-199 (216)
72 PRK10572 DNA-binding transcrip 95.2 0.082 1.8E-06 45.5 7.4 49 105-159 43-91 (290)
73 COG3822 ABC-type sugar transpo 94.7 0.15 3.3E-06 41.7 7.2 65 95-159 90-177 (225)
74 PRK12335 tellurite resistance 94.4 0.23 4.9E-06 43.1 8.2 61 99-159 19-82 (287)
75 PF07847 DUF1637: Protein of u 94.4 0.38 8.3E-06 39.8 9.0 85 87-172 40-144 (200)
76 KOG3995 3-hydroxyanthranilate 94.3 0.072 1.6E-06 44.2 4.5 56 98-155 40-95 (279)
77 COG1741 Pirin-related protein 94.1 0.25 5.4E-06 42.9 7.8 71 95-169 48-122 (276)
78 PRK09685 DNA-binding transcrip 94.1 0.37 8.1E-06 41.5 8.9 66 90-160 44-114 (302)
79 PF13759 2OG-FeII_Oxy_5: Putat 93.3 0.36 7.9E-06 35.1 6.4 62 96-157 5-88 (101)
80 PF02373 JmjC: JmjC domain, hy 93.0 0.26 5.6E-06 36.0 5.3 29 133-161 79-107 (114)
81 PF06865 DUF1255: Protein of u 92.8 1.3 2.9E-05 32.2 8.5 66 96-169 28-93 (94)
82 COG5553 Predicted metal-depend 92.6 0.58 1.3E-05 37.4 6.9 79 91-171 73-157 (191)
83 PF09313 DUF1971: Domain of un 92.3 1.4 3E-05 31.2 7.9 59 102-160 14-75 (82)
84 COG3508 HmgA Homogentisate 1,2 92.3 2 4.3E-05 38.6 10.5 60 102-167 135-195 (427)
85 TIGR02466 conserved hypothetic 92.2 0.9 2E-05 37.6 8.0 77 93-170 98-197 (201)
86 PF05726 Pirin_C: Pirin C-term 92.2 0.91 2E-05 33.3 7.3 68 94-169 2-69 (104)
87 PF05118 Asp_Arg_Hydrox: Aspar 92.1 0.56 1.2E-05 37.4 6.4 82 80-166 67-155 (163)
88 PF14525 AraC_binding_2: AraC- 92.0 1.7 3.7E-05 33.5 9.1 67 91-162 34-100 (172)
89 KOG3706 Uncharacterized conser 91.8 0.11 2.3E-06 48.2 2.2 59 99-158 325-404 (629)
90 PRK10579 hypothetical protein; 91.7 2.8 6E-05 30.5 9.0 64 97-168 29-92 (94)
91 PRK00924 5-keto-4-deoxyuronate 91.7 1.5 3.3E-05 38.0 9.0 84 90-175 174-263 (276)
92 PRK15131 mannose-6-phosphate i 91.6 1 2.2E-05 41.1 8.3 59 90-156 320-378 (389)
93 TIGR00218 manA mannose-6-phosp 90.8 1.7 3.8E-05 38.0 8.8 60 89-156 233-292 (302)
94 PLN02288 mannose-6-phosphate i 90.3 0.88 1.9E-05 41.5 6.6 58 90-151 333-390 (394)
95 KOG2757 Mannose-6-phosphate is 89.7 2.2 4.7E-05 38.4 8.3 74 90-169 332-405 (411)
96 PF11142 DUF2917: Protein of u 89.1 2.1 4.5E-05 28.7 6.1 57 96-157 2-58 (63)
97 COG2850 Uncharacterized conser 88.7 1.1 2.3E-05 40.4 5.7 61 97-158 125-202 (383)
98 PF06172 Cupin_5: Cupin superf 88.0 11 0.00024 29.3 11.0 77 91-168 41-124 (139)
99 PRK03606 ureidoglycolate hydro 85.6 4.9 0.00011 32.2 7.4 79 90-168 55-140 (162)
100 PRK09391 fixK transcriptional 85.4 9.2 0.0002 31.7 9.5 77 90-167 35-112 (230)
101 PF00027 cNMP_binding: Cyclic 84.6 3.4 7.3E-05 28.0 5.5 47 97-145 3-51 (91)
102 PF04622 ERG2_Sigma1R: ERG2 an 84.1 4.7 0.0001 33.8 7.0 93 102-205 112-206 (216)
103 PF04115 Ureidogly_hydro: Urei 82.9 6.2 0.00013 31.5 7.0 82 90-171 56-146 (165)
104 COG1482 ManA Phosphomannose is 82.2 9.3 0.0002 33.8 8.4 58 90-155 241-298 (312)
105 PRK11753 DNA-binding transcrip 82.1 14 0.00031 29.6 9.1 53 94-147 21-74 (211)
106 PRK13918 CRP/FNR family transc 80.7 7.9 0.00017 31.0 7.1 54 95-148 8-63 (202)
107 PHA00672 hypothetical protein 78.5 17 0.00037 28.0 7.6 70 90-166 46-115 (152)
108 PF04962 KduI: KduI/IolB famil 78.5 28 0.00061 30.0 10.0 98 73-173 135-247 (261)
109 PRK00924 5-keto-4-deoxyuronate 75.7 19 0.00042 31.3 8.2 52 112-168 73-127 (276)
110 PHA02984 hypothetical protein; 74.3 22 0.00047 30.8 8.0 51 115-167 96-146 (286)
111 COG3123 Uncharacterized protei 72.9 16 0.00035 26.0 5.7 43 111-156 40-82 (94)
112 PLN02868 acyl-CoA thioesterase 72.7 14 0.0003 33.7 7.1 53 94-147 32-84 (413)
113 PRK13395 ureidoglycolate hydro 72.7 20 0.00042 29.0 7.1 68 103-170 70-143 (171)
114 PHA02890 hypothetical protein; 72.1 22 0.00048 30.6 7.5 49 115-167 95-143 (278)
115 PF04962 KduI: KduI/IolB famil 71.8 14 0.00031 31.7 6.5 69 92-167 28-104 (261)
116 smart00100 cNMP Cyclic nucleot 70.2 28 0.00061 24.0 6.9 54 94-148 18-72 (120)
117 cd00038 CAP_ED effector domain 69.0 21 0.00045 24.6 6.0 53 94-147 18-71 (115)
118 PRK10202 ebgC cryptic beta-D-g 68.8 52 0.0011 25.7 8.6 52 105-156 58-127 (149)
119 TIGR00218 manA mannose-6-phosp 67.2 3.1 6.8E-05 36.4 1.5 21 135-155 151-171 (302)
120 KOG2130 Phosphatidylserine-spe 66.5 8.4 0.00018 34.2 4.0 41 135-175 263-303 (407)
121 KOG1417 Homogentisate 1,2-diox 66.2 96 0.0021 27.5 11.4 69 106-179 149-219 (446)
122 PRK10402 DNA-binding transcrip 64.2 24 0.00051 29.0 6.2 51 96-147 34-85 (226)
123 PRK15131 mannose-6-phosphate i 64.1 7.3 0.00016 35.5 3.3 23 134-156 236-258 (389)
124 COG1482 ManA Phosphomannose is 63.5 6.2 0.00013 34.9 2.6 22 135-156 158-179 (312)
125 PRK15186 AraC family transcrip 63.1 25 0.00054 30.7 6.3 46 113-162 39-84 (291)
126 KOG4281 Uncharacterized conser 61.2 4.7 0.0001 33.7 1.4 84 87-172 71-175 (236)
127 PF06719 AraC_N: AraC-type tra 61.2 37 0.0008 26.5 6.5 51 113-168 24-77 (155)
128 COG3718 IolB Uncharacterized e 59.4 90 0.002 26.7 8.7 83 75-161 16-103 (270)
129 TIGR00022 uncharacterized prot 57.1 62 0.0013 24.9 7.1 30 99-128 56-85 (142)
130 COG0664 Crp cAMP-binding prote 56.9 47 0.001 26.0 6.6 56 93-149 23-79 (214)
131 COG2731 EbgC Beta-galactosidas 56.2 66 0.0014 25.5 7.1 61 100-160 57-137 (154)
132 PRK14585 pgaD putative PGA bio 54.6 16 0.00034 28.4 3.2 25 188-212 88-112 (137)
133 PF13994 PgaD: PgaD-like prote 53.8 18 0.00038 27.9 3.5 24 189-212 100-123 (138)
134 PRK11161 fumarate/nitrate redu 53.3 58 0.0013 26.6 6.8 51 96-147 40-91 (235)
135 PRK14584 hmsS hemin storage sy 52.8 19 0.00041 28.6 3.5 25 188-212 97-121 (153)
136 TIGR03697 NtcA_cyano global ni 52.4 34 0.00074 26.8 5.1 36 112-147 11-47 (193)
137 COG1741 Pirin-related protein 51.3 1.7E+02 0.0036 25.5 11.1 41 83-125 166-206 (276)
138 PRK09392 ftrB transcriptional 51.0 43 0.00092 27.5 5.6 51 95-146 32-82 (236)
139 KOG2131 Uncharacterized conser 50.0 21 0.00045 32.4 3.6 60 100-161 207-294 (427)
140 PF13640 2OG-FeII_Oxy_3: 2OG-F 49.1 48 0.001 23.2 5.0 62 97-158 5-86 (100)
141 PF04074 DUF386: Domain of unk 48.4 1.3E+02 0.0028 23.3 8.2 57 100-156 57-134 (153)
142 PF02787 CPSase_L_D3: Carbamoy 47.3 21 0.00045 27.1 2.9 26 189-214 72-97 (123)
143 PF14801 GCD14_N: tRNA methylt 46.1 49 0.0011 21.5 4.0 31 124-154 11-41 (54)
144 PF13348 Y_phosphatase3C: Tyro 44.6 22 0.00047 23.5 2.4 23 191-213 45-67 (68)
145 KOG3416 Predicted nucleic acid 42.7 1E+02 0.0022 23.8 5.8 65 84-157 12-80 (134)
146 PLN02288 mannose-6-phosphate i 41.4 20 0.00044 32.8 2.3 21 136-156 252-272 (394)
147 COG3717 KduI 5-keto 4-deoxyuro 40.9 1.4E+02 0.003 25.6 7.0 84 90-175 176-265 (278)
148 PRK02290 3-dehydroquinate synt 38.3 89 0.0019 28.1 5.8 68 90-157 266-336 (344)
149 PF13384 HTH_23: Homeodomain-l 38.0 40 0.00087 20.5 2.7 26 189-214 17-42 (50)
150 PF00325 Crp: Bacterial regula 36.9 39 0.00085 19.4 2.3 25 190-214 3-27 (32)
151 KOG0500 Cyclic nucleotide-gate 36.3 71 0.0015 30.2 5.0 32 112-145 348-379 (536)
152 PLN03192 Voltage-dependent pot 35.4 85 0.0018 31.3 5.8 52 93-145 397-448 (823)
153 PF05962 HutD: HutD; InterPro 35.0 43 0.00093 27.1 3.1 33 112-149 135-167 (184)
154 KOG0498 K+-channel ERG and rel 32.6 82 0.0018 31.3 5.0 48 97-145 446-493 (727)
155 KOG1633 F-box protein JEMMA an 31.4 62 0.0014 32.3 4.1 77 92-169 137-230 (776)
156 KOG1356 Putative transcription 31.2 18 0.00039 36.1 0.3 60 100-160 764-824 (889)
157 PF01987 AIM24: Mitochondrial 30.9 92 0.002 25.4 4.5 44 113-157 130-173 (215)
158 PF01959 DHQS: 3-dehydroquinat 30.7 1.4E+02 0.0029 27.1 5.7 69 90-158 276-347 (354)
159 KOG4064 Cysteine dioxygenase C 30.6 86 0.0019 25.0 4.0 81 91-171 72-161 (196)
160 KOG0501 K+-channel KCNQ [Inorg 25.7 1E+02 0.0022 30.0 4.2 59 90-157 568-626 (971)
161 PF12071 DUF3551: Protein of u 25.4 1E+02 0.0022 21.7 3.3 33 1-33 1-35 (82)
162 PF00166 Cpn10: Chaperonin 10 24.3 1.4E+02 0.003 21.3 3.9 28 130-157 49-76 (93)
163 smart00153 VHP Villin headpiec 22.7 95 0.002 18.3 2.3 21 190-210 2-22 (36)
164 PF01238 PMI_typeI: Phosphoman 22.5 79 0.0017 28.6 2.8 22 136-157 251-272 (373)
165 PF02209 VHP: Villin headpiece 21.9 97 0.0021 18.3 2.2 21 190-210 2-22 (36)
166 PF05721 PhyH: Phytanoyl-CoA d 21.4 1.5E+02 0.0033 22.9 4.0 28 134-161 179-207 (211)
167 PF06971 Put_DNA-bind_N: Putat 20.6 87 0.0019 19.9 1.9 20 189-208 28-47 (50)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.94 E-value=1.5e-25 Score=200.25 Aligned_cols=162 Identities=17% Similarity=0.301 Sum_probs=144.1
Q ss_pred ccccCCCCcCCCCeeeeccCCCCcccCCCCcEEEEeccCCCCCCCccceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeE
Q 027839 43 FACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGE 122 (218)
Q Consensus 43 ~~c~~p~~~~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~ 122 (218)
.+-+.+..-.++.|+|+....++ ....|++++.++..+||+++ ++++++++++||++.++|||++++|++||++|+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~p--~~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~ 276 (367)
T TIGR03404 201 EAVTGPAGEVPGPFTYHLSEQKP--KQVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQ 276 (367)
T ss_pred ccCcCCCCCCCccEEEEhhhCCc--eecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEE
Confidence 33444555566779999877666 34677888999999999988 579999999999999999999999999999999
Q ss_pred EEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEecCCCCccchhchhhhcCCCCCCHHHHHHHcCCC
Q 027839 123 LDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVG 202 (218)
Q Consensus 123 ~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~s~~p~~~~~~~~lf~~~~~~~~~vl~~af~~~ 202 (218)
+++.+.+++++.++..+++||+++||+|..|+++|.|+++++++++|++..++.+.+.+|+ + .+|++|++++|+++
T Consensus 277 ~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l-~---~~p~~vl~~~~~~~ 352 (367)
T TIGR03404 277 ARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWL-A---LTPPQLVAAHLNLD 352 (367)
T ss_pred EEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHH-h---hCCHHHHHHHhCcC
Confidence 9999988777666889999999999999999999999999999999999999999998888 3 59999999999999
Q ss_pred HHHHHHHHhh
Q 027839 203 TKEIEKIKSK 212 (218)
Q Consensus 203 ~~~v~~l~~~ 212 (218)
++++++|++.
T Consensus 353 ~~~~~~l~~~ 362 (367)
T TIGR03404 353 DEVIDSLKKE 362 (367)
T ss_pred HHHHHhcccc
Confidence 9999999865
No 2
>PLN00212 glutelin; Provisional
Probab=99.91 E-value=4e-23 Score=189.28 Aligned_cols=146 Identities=18% Similarity=0.353 Sum_probs=128.4
Q ss_pred CcccCCCCcEEEEeccCCCCCCCccceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecC-CcEEEEEEeCCC
Q 027839 65 GVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTA-DKLISKTVKKGE 143 (218)
Q Consensus 65 ~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~-~~~~~~~L~~Gd 143 (218)
.++.++.++.++.++..++|+|+++++++.+++|.||++.+||||++|+|++||++|++++++++++ ++++...|++||
T Consensus 322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~Gd 401 (493)
T PLN00212 322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQ 401 (493)
T ss_pred cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCC
Confidence 3456888999999999999999999999999999999999999999999999999999999999876 578899999999
Q ss_pred EEEECCCCeEEEEeCCCCCEEEEEEecCCCCccchhc--hhhhcCCCCCCHHHHHHHcCCCHHHHHHHHhhcC
Q 027839 144 IYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIA--ATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLA 214 (218)
Q Consensus 144 ~~~iP~g~~H~~~N~g~~~a~~l~~~~s~~p~~~~~~--~~lf~~~~~~~~~vl~~af~~~~~~v~~l~~~~~ 214 (218)
+++||+|.+|.... +++...+++...+.++-...++ .++|+ +||.+||+++|+++.+++++||..+.
T Consensus 402 vfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~---alp~eVla~Af~is~eea~~lk~n~~ 470 (493)
T PLN00212 402 LLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFR---ALPVDVIANAYRISREEARRLKNNRG 470 (493)
T ss_pred EEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHH---hCCHHHHHHHcCCCHHHHHHHHhccc
Confidence 99999999998766 4667888877666655444443 37887 79999999999999999999998753
No 3
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.88 E-value=1.2e-21 Score=175.25 Aligned_cols=135 Identities=20% Similarity=0.338 Sum_probs=119.1
Q ss_pred CCCcEEEEeccCCCCCCCccceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECC
Q 027839 70 SVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPK 149 (218)
Q Consensus 70 ~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~ 149 (218)
..|++++.++..+||++++ +++.++++.||+..++|||. +.|++||++|++++++++++|+.+...|++||+++||+
T Consensus 48 ~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~ 124 (367)
T TIGR03404 48 ENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPP 124 (367)
T ss_pred ccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECC
Confidence 3678999999999999985 69999999999999999996 68999999999999999877887777899999999999
Q ss_pred CCeEEEEeCCCCCEEEEEEecCCC---CccchhchhhhcCCCCCCHHHHHHHcCCCHHHHHHHHhh
Q 027839 150 ALVHFQKNNGDKPASVISAFNSQL---PGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 212 (218)
Q Consensus 150 g~~H~~~N~g~~~a~~l~~~~s~~---p~~~~~~~~lf~~~~~~~~~vl~~af~~~~~~v~~l~~~ 212 (218)
|.+|+++|.+ +.++++.+|+... +..+.+..++ + .+|.+||+++|+++.+++++|+++
T Consensus 125 g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~l-~---~~p~~Vla~~f~l~~~~~~~l~~~ 185 (367)
T TIGR03404 125 GIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDWL-A---HTPKDVLAKNFGVPESAFDNLPLK 185 (367)
T ss_pred CCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHHH-H---hCCHHHHHHHhCCCHHHHHhcccc
Confidence 9999999984 5688888888765 4455566664 6 599999999999999999999874
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.87 E-value=1.8e-21 Score=152.73 Aligned_cols=127 Identities=35% Similarity=0.609 Sum_probs=106.1
Q ss_pred ccCCCCcEEEEeccCCCCCCCcc-ceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCC-----cEEEEE--
Q 027839 67 VNNSVGSLVTAANVEKIPGLNTL-GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD-----KLISKT-- 138 (218)
Q Consensus 67 ~~~~~g~~~~~~~~~~~P~l~~~-gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~-----~~~~~~-- 138 (218)
.....++.++.++..++|.+.+. ++.+.+..++||++..|||| ++.|+.||++|+++++++.+++ +....+
T Consensus 9 ~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~ 87 (144)
T PF00190_consen 9 RVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVR 87 (144)
T ss_dssp EEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEE
T ss_pred cccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceee
Confidence 44566778999999999965444 45566677799999999999 8999999999999999998765 344555
Q ss_pred EeCCCEEEECCCCeEEEEeCCCCCEEEEEEecCCCCccchhchhhhcCCCCCCHHHHHHHcCCCHHHH
Q 027839 139 VKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEI 206 (218)
Q Consensus 139 L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~s~~p~~~~~~~~lf~~~~~~~~~vl~~af~~~~~~v 206 (218)
+++||++++|+|.+||+.|.++++...+.++.+.++... +|+++++++|+++.+++
T Consensus 88 l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 88 LKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp EETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHH
T ss_pred eecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcC
Confidence 999999999999999999999888888888888777664 78999999999999876
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.83 E-value=2.6e-19 Score=140.79 Aligned_cols=134 Identities=34% Similarity=0.695 Sum_probs=114.1
Q ss_pred CCCCcEEEEeccCCCCCCCccceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecC-CcEEEEEEeCCCEEEE
Q 027839 69 NSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTA-DKLISKTVKKGEIYVF 147 (218)
Q Consensus 69 ~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~-~~~~~~~L~~Gd~~~i 147 (218)
+..|+.++.++...+|.+++.++.+.+++++||+..++|+|+++.|++||++|++++.+.++. ++.....+++||+++|
T Consensus 8 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~i 87 (146)
T smart00835 8 SNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVV 87 (146)
T ss_pred cCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEE
Confidence 456677888888899999999999999999999999999998789999999999999987753 3556789999999999
Q ss_pred CCCCeEEEEeCCCCCEEEEEEecCCCCccchh---chhhhcCCCCCCHHHHHHHcCCCHHHH
Q 027839 148 PKALVHFQKNNGDKPASVISAFNSQLPGTQSI---AATLFTATPPVPDNVLTKAFQVGTKEI 206 (218)
Q Consensus 148 P~g~~H~~~N~g~~~a~~l~~~~s~~p~~~~~---~~~lf~~~~~~~~~vl~~af~~~~~~v 206 (218)
|+|..|++.|.+++++++++ +.+.+|..-.. ..++|+ ++++++++++|+++.+++
T Consensus 88 p~g~~H~~~n~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 88 PQGHPHFQVNSGDENLEFVA-FNTNDPNRRFFLAGRNSVLR---GLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred CCCCEEEEEcCCCCCEEEEE-EecCCCCceeEeecccchhh---cCCHHHHHHHhCcChHHc
Confidence 99999999999999999985 55566653221 236666 799999999999999875
No 6
>PLN00212 glutelin; Provisional
Probab=99.80 E-value=1.2e-18 Score=159.92 Aligned_cols=138 Identities=17% Similarity=0.352 Sum_probs=114.5
Q ss_pred CCCcEEEEeccCCCCCCCccceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCC-----cE----------
Q 027839 70 SVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD-----KL---------- 134 (218)
Q Consensus 70 ~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~-----~~---------- 134 (218)
..||.+...+ .+.+.+.+.|+++.|+++.|+++..||+| ++.+++||++|++.++++.++- +.
T Consensus 60 se~G~~E~~~-~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~ 137 (493)
T PLN00212 60 SEAGVTEYFD-EKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQS 137 (493)
T ss_pred ccCceeeecC-CCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccc
Confidence 4555555555 77899999999999999999999999999 5899999999999999996420 11
Q ss_pred ----------EEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEecCCCCc--------cchhc----------------
Q 027839 135 ----------ISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPG--------TQSIA---------------- 180 (218)
Q Consensus 135 ----------~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~s~~p~--------~~~~~---------------- 180 (218)
..+.|++||+++||+|++||++|.|+++++.+.+++..++. .+.++
T Consensus 138 ~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~~ 217 (493)
T PLN00212 138 QSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIEQ 217 (493)
T ss_pred cccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccccc
Confidence 12699999999999999999999999999988888765532 22232
Q ss_pred ---hhhhcCCCCCCHHHHHHHcCCCHHHHHHHHhh
Q 027839 181 ---ATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 212 (218)
Q Consensus 181 ---~~lf~~~~~~~~~vl~~af~~~~~~v~~l~~~ 212 (218)
.++|+ +|+.++|+.||+++.++++||+.+
T Consensus 218 ~~~~nifs---GF~~e~La~Afnv~~e~~~klq~~ 249 (493)
T PLN00212 218 HSGQNIFS---GFSTELLSEALGINAQVAKRLQSQ 249 (493)
T ss_pred cccCchhh---cCCHHHHHHHHCCCHHHHHHHhcc
Confidence 24887 899999999999999999999854
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.76 E-value=6.7e-18 Score=138.17 Aligned_cols=152 Identities=20% Similarity=0.308 Sum_probs=132.0
Q ss_pred CCCCeeeeccCCCCcccCCCCcEEEEeccCCCCCCCccceEEEEEEEcCCccCCCCCCCCCcE--EEEEEEeEEEEEEEe
Q 027839 52 TADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATE--MIFVLEGELDVGFIS 129 (218)
Q Consensus 52 ~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E--~~~Vl~G~~~v~~~~ 129 (218)
..+||+|....+.+.. .|+.+.......+|+- .-..+.+.||++...||||+++| +.||++|++++.+..
T Consensus 49 ~~~~~~yel~~~~~~~---~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~ 120 (209)
T COG2140 49 KEDDFVYELLESEPGE---RGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQK 120 (209)
T ss_pred CCCceEEEeecccccc---cCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEc
Confidence 6789999887664422 2778888888889974 45677899999999999999999 999999999999999
Q ss_pred cCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEecCCCCccchhchhhhcCCCCCCHHHHHHHcCCCHHHHHHH
Q 027839 130 TADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKI 209 (218)
Q Consensus 130 ~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~s~~p~~~~~~~~lf~~~~~~~~~vl~~af~~~~~~v~~l 209 (218)
++|+..+..+++||+++||++..|+..|+|+++++++.++....+....+..+++ +++..+++..++.+.+..+.+
T Consensus 121 ~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~----~~~~~~~~~~~~~~~~~~D~p 196 (209)
T COG2140 121 PEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLG----GMPPVLVENGLNKNPKYVDVP 196 (209)
T ss_pred CCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhc----cCCceeeccccccCcccccCc
Confidence 8898889999999999999999999999999999999999999888888888886 478888888998888888888
Q ss_pred HhhcCC
Q 027839 210 KSKLAP 215 (218)
Q Consensus 210 ~~~~~~ 215 (218)
+.++..
T Consensus 197 ~~~~~~ 202 (209)
T COG2140 197 RIKFAK 202 (209)
T ss_pred cccccc
Confidence 776653
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.48 E-value=8.6e-14 Score=95.37 Aligned_cols=70 Identities=30% Similarity=0.574 Sum_probs=63.3
Q ss_pred EEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027839 95 RIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 169 (218)
Q Consensus 95 ~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~ 169 (218)
+++++||+..++|+|+...|++||++|++++.+.+ + ...+++||.+++|++..|.+.|.++++++++.++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~---~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDG---E--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEETT---E--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEEcc---E--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 57899999999999987559999999999998544 3 7899999999999999999999999999999875
No 9
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.1e-12 Score=100.94 Aligned_cols=82 Identities=27% Similarity=0.308 Sum_probs=73.9
Q ss_pred cceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027839 89 LGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 168 (218)
Q Consensus 89 ~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~ 168 (218)
...++.++.++||+...+|.|.+.+|++||++|++.+.+.+. ...|++||++++|+|..|+++|.|..++.++.+
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~-----~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei 108 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGE-----EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEV 108 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCcceEEEEE
Confidence 367899999999999888888878999999999999999764 889999999999999999999999999999999
Q ss_pred ecCCCCc
Q 027839 169 FNSQLPG 175 (218)
Q Consensus 169 ~~s~~p~ 175 (218)
......+
T Consensus 109 ~~p~~~~ 115 (127)
T COG0662 109 QSPPYLG 115 (127)
T ss_pred ecCCcCC
Confidence 7765544
No 10
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.39 E-value=4.8e-12 Score=97.47 Aligned_cols=83 Identities=31% Similarity=0.513 Sum_probs=71.1
Q ss_pred CCCCccceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCE
Q 027839 84 PGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPA 163 (218)
Q Consensus 84 P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a 163 (218)
+...+..+.+.++.++||+..++|+||...+.+||++|++++++.++ .+.+++||++++|+|..|+..|.++...
T Consensus 36 ~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~-----~~~l~~Gd~i~ip~g~~H~~~a~~~~~~ 110 (131)
T COG1917 36 PRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEGE-----KKELKAGDVIIIPPGVVHGLKAVEDEPM 110 (131)
T ss_pred cCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecCC-----ceEecCCCEEEECCCCeeeeccCCCCce
Confidence 33344567889999999999999999855899999999999998754 7899999999999999999999988876
Q ss_pred EEEEEecC
Q 027839 164 SVISAFNS 171 (218)
Q Consensus 164 ~~l~~~~s 171 (218)
..+.++..
T Consensus 111 ~~l~v~~~ 118 (131)
T COG1917 111 VLLLVFPL 118 (131)
T ss_pred eEEEEeee
Confidence 66766655
No 11
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.38 E-value=6.8e-12 Score=96.33 Aligned_cols=80 Identities=23% Similarity=0.431 Sum_probs=70.0
Q ss_pred cceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEE-EE-ecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEE
Q 027839 89 LGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVG-FI-STADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVI 166 (218)
Q Consensus 89 ~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~-~~-~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l 166 (218)
.++++.+..++||+..+.|+|.. .|+.||++|++++. +. ++ .+.|++||++++|++..|.+.|. ++++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l 104 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALDKHDRHYLRAG--EDMRLV 104 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEECCCCcEEEEcC--CCEEEE
Confidence 36788999999999889999975 79999999999998 53 43 79999999999999999999997 899999
Q ss_pred EEecCCCCcc
Q 027839 167 SAFNSQLPGT 176 (218)
Q Consensus 167 ~~~~s~~p~~ 176 (218)
++++...+|.
T Consensus 105 ~v~tP~~~~~ 114 (125)
T PRK13290 105 CVFNPPLTGR 114 (125)
T ss_pred EEECCCCCCc
Confidence 9988665554
No 12
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.33 E-value=3.5e-11 Score=98.62 Aligned_cols=89 Identities=16% Similarity=0.243 Sum_probs=76.3
Q ss_pred CCCccceEEEEEEEcCCcc------CCCCCCCCC--cEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEE
Q 027839 85 GLNTLGVSLSRIDYEAGGL------NPPHTHPRA--TEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQK 156 (218)
Q Consensus 85 ~l~~~gis~~~~~l~pg~~------~~pH~H~~a--~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~ 156 (218)
.++..++.+....++||.. .+.|+|+.. .|+.||++|++.+.+.+.+|......+++||+++||+|..|...
T Consensus 62 ~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~i 141 (191)
T PRK04190 62 EETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSV 141 (191)
T ss_pred CCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeE
Confidence 3455578999999999985 567999754 59999999999999887666556789999999999999999999
Q ss_pred eCCCCCEEEEEEecCCC
Q 027839 157 NNGDKPASVISAFNSQL 173 (218)
Q Consensus 157 N~g~~~a~~l~~~~s~~ 173 (218)
|.|++++++++++....
T Consensus 142 N~G~epl~fl~v~p~~~ 158 (191)
T PRK04190 142 NTGDEPLVFLACYPADA 158 (191)
T ss_pred ECCCCCEEEEEEEcCCc
Confidence 99999999999887643
No 13
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.28 E-value=2.3e-11 Score=95.21 Aligned_cols=93 Identities=19% Similarity=0.235 Sum_probs=75.6
Q ss_pred cCCCCCCCccceEEEEEEEcCCcc-CCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCC--CeEEEE
Q 027839 80 VEKIPGLNTLGVSLSRIDYEAGGL-NPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKA--LVHFQK 156 (218)
Q Consensus 80 ~~~~P~l~~~gis~~~~~l~pg~~-~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g--~~H~~~ 156 (218)
...+-+|+.. .+....++||+. ...|||...+|++|||+|++++.+.+. ...|++||++-||+| ..|.++
T Consensus 33 lG~~~Gl~~f--Gvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~-----e~~lrpGD~~gFpAG~~~aHhli 105 (161)
T COG3837 33 LGDALGLKRF--GVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGG-----ETRLRPGDSAGFPAGVGNAHHLI 105 (161)
T ss_pred hhhhcChhhc--ccceEEeCCCCccccccccccCceEEEEEcCceEEEECCe-----eEEecCCceeeccCCCcceeEEe
Confidence 3455666644 455568899986 567999999999999999999988664 789999999999999 899999
Q ss_pred eCCCCCEEEEEEecCCCCccchh
Q 027839 157 NNGDKPASVISAFNSQLPGTQSI 179 (218)
Q Consensus 157 N~g~~~a~~l~~~~s~~p~~~~~ 179 (218)
|.++..++++++-+...-....+
T Consensus 106 N~s~~~~~yL~vG~r~~~d~i~Y 128 (161)
T COG3837 106 NRSDVILRYLEVGTREPDDIITY 128 (161)
T ss_pred ecCCceEEEEEeccccccceeec
Confidence 99999999999876554444443
No 14
>PRK11171 hypothetical protein; Provisional
Probab=99.23 E-value=3e-10 Score=97.81 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=69.0
Q ss_pred ccceEEEEEEEcCCccCCCCCCC-CCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEE
Q 027839 88 TLGVSLSRIDYEAGGLNPPHTHP-RATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVI 166 (218)
Q Consensus 88 ~~gis~~~~~l~pg~~~~pH~H~-~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l 166 (218)
..++.+.+++++||+....|.|+ ...|++||++|++++.+.++ .+.|++||++++|++..|.++|.++++++++
T Consensus 58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~-----~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l 132 (266)
T PRK11171 58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGK-----THALSEGGYAYLPPGSDWTLRNAGAEDARFH 132 (266)
T ss_pred CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence 34688999999999987777765 46899999999999998654 8899999999999999999999999999999
Q ss_pred EEecC
Q 027839 167 SAFNS 171 (218)
Q Consensus 167 ~~~~s 171 (218)
++...
T Consensus 133 ~v~~~ 137 (266)
T PRK11171 133 WIRKR 137 (266)
T ss_pred EEEcC
Confidence 88643
No 15
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.20 E-value=2.3e-10 Score=93.23 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=64.9
Q ss_pred ceEEEEEEEcCCccC-CCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027839 90 GVSLSRIDYEAGGLN-PPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 168 (218)
Q Consensus 90 gis~~~~~l~pg~~~-~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~ 168 (218)
.+.+....++||+.. ..|+|+ ..|++||++|++++.+.+. .+.|++||+++||++.+|.+.|.++++++++++
T Consensus 106 ~~~~~~~~~~pg~~~~~~~~h~-~~E~~~Vl~G~~~~~~~~~-----~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~ 179 (185)
T PRK09943 106 TLAMIFETYQPGTTTGERIKHQ-GEEIGTVLEGEIVLTINGQ-----DYHLVAGQSYAINTGIPHSFSNTSAGICRIISA 179 (185)
T ss_pred eeEEEEEEccCCCCcccccccC-CcEEEEEEEeEEEEEECCE-----EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEE
Confidence 456777788999865 466776 5999999999999998664 789999999999999999999999999999987
Q ss_pred ec
Q 027839 169 FN 170 (218)
Q Consensus 169 ~~ 170 (218)
..
T Consensus 180 ~~ 181 (185)
T PRK09943 180 HT 181 (185)
T ss_pred eC
Confidence 64
No 16
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.19 E-value=1.9e-10 Score=106.33 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=71.1
Q ss_pred ceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027839 90 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 169 (218)
Q Consensus 90 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~ 169 (218)
++.+.+++++||+..++|+|+...|.+||++|++++.+.+. .+.|++||++++|+|..|.+.|.|+++++++++.
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~-----~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDE-----TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 57889999999998888888878999999999999998764 7899999999999999999999999999999997
Q ss_pred cCC
Q 027839 170 NSQ 172 (218)
Q Consensus 170 ~s~ 172 (218)
...
T Consensus 450 ~~~ 452 (468)
T TIGR01479 450 SGS 452 (468)
T ss_pred cCC
Confidence 644
No 17
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.18 E-value=2.3e-10 Score=105.77 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=70.9
Q ss_pred cceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027839 89 LGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 168 (218)
Q Consensus 89 ~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~ 168 (218)
.++.+.+++++||+....|+|....|++||++|++++.+.++ .+.|++||+++||+|.+|+++|.|+++++++++
T Consensus 383 ~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~-----~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V 457 (478)
T PRK15460 383 DRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGD-----IKLLGENESIYIPLGATHCLENPGKIPLDLIEV 457 (478)
T ss_pred CcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence 367889999999998777877777899999999999998764 899999999999999999999999999999998
Q ss_pred ecCC
Q 027839 169 FNSQ 172 (218)
Q Consensus 169 ~~s~ 172 (218)
....
T Consensus 458 ~~g~ 461 (478)
T PRK15460 458 RSGS 461 (478)
T ss_pred EcCC
Confidence 6653
No 18
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.15 E-value=3.4e-10 Score=89.61 Aligned_cols=77 Identities=23% Similarity=0.336 Sum_probs=71.0
Q ss_pred ceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027839 90 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 169 (218)
Q Consensus 90 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~ 169 (218)
++.+.++.+.||....+|.|....|.++|++|++.+.+.+. ...+++||+++||+|..|++.|.|+.++.++.+-
T Consensus 62 ~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~-----~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq 136 (151)
T PF01050_consen 62 GYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDE-----EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQ 136 (151)
T ss_pred CEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCE-----EEEEcCCCEEEECCCCEEEEECCCCcCcEEEEEe
Confidence 67899999999999999999888999999999999998664 7899999999999999999999999999999886
Q ss_pred cC
Q 027839 170 NS 171 (218)
Q Consensus 170 ~s 171 (218)
..
T Consensus 137 ~G 138 (151)
T PF01050_consen 137 TG 138 (151)
T ss_pred cC
Confidence 54
No 19
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=1.1e-09 Score=81.93 Aligned_cols=84 Identities=21% Similarity=0.337 Sum_probs=73.1
Q ss_pred ceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027839 90 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 169 (218)
Q Consensus 90 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~ 169 (218)
++.+-.++++||+....|.|.+-+-.+||++|+..+++.+. -.+..+.++||.++||+|++|.-.|.+++++..+.+.
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~r--LE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIaR 122 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNR--LEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIAR 122 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccc--eeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEEc
Confidence 67788899999999999999887889999999999998763 2246788999999999999999999999999999887
Q ss_pred cCCCCc
Q 027839 170 NSQLPG 175 (218)
Q Consensus 170 ~s~~p~ 175 (218)
+..++.
T Consensus 123 sDp~~~ 128 (142)
T COG4101 123 SDPNPQ 128 (142)
T ss_pred cCCCCC
Confidence 755543
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.01 E-value=4.9e-09 Score=90.04 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=66.6
Q ss_pred ceEEEEEEEcCCccC-CCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027839 90 GVSLSRIDYEAGGLN-PPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 168 (218)
Q Consensus 90 gis~~~~~l~pg~~~-~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~ 168 (218)
.+.+.+++++||+.. .+|.|+..+|++||++|++++.+.++ ++.|++||.+++|++..|.++|.++++++++.+
T Consensus 57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~-----~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v 131 (260)
T TIGR03214 57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGE-----THELREGGYAYLPPGSKWTLANAQAEDARFFLY 131 (260)
T ss_pred cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence 578899999998765 45667766899999999999987654 789999999999999999999999999999987
Q ss_pred ecC
Q 027839 169 FNS 171 (218)
Q Consensus 169 ~~s 171 (218)
...
T Consensus 132 ~k~ 134 (260)
T TIGR03214 132 KKR 134 (260)
T ss_pred Eee
Confidence 643
No 21
>PRK11171 hypothetical protein; Provisional
Probab=98.96 E-value=5.9e-09 Score=89.82 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=66.3
Q ss_pred ceEEEEEEEcCCccCCCC-CCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027839 90 GVSLSRIDYEAGGLNPPH-THPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 168 (218)
Q Consensus 90 gis~~~~~l~pg~~~~pH-~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~ 168 (218)
.+.+.+++++||+..+.| +|. ..|.+||++|++++.+.++ .+.|++||++.++++..|++.|.|+++++++..
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~-~ee~i~Vl~G~~~~~~~~~-----~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~ 256 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHV-MEHGLYVLEGKGVYRLNND-----WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLY 256 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCC-ceEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCCEEEECCCCCcEEEEEE
Confidence 358889999999998885 565 6999999999999987654 889999999999999999999999999999876
Q ss_pred ec
Q 027839 169 FN 170 (218)
Q Consensus 169 ~~ 170 (218)
-+
T Consensus 257 k~ 258 (266)
T PRK11171 257 KD 258 (266)
T ss_pred cc
Confidence 54
No 22
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.96 E-value=5.2e-09 Score=89.90 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=64.2
Q ss_pred ceEEEEEEEcCCccCCC-CCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027839 90 GVSLSRIDYEAGGLNPP-HTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 168 (218)
Q Consensus 90 gis~~~~~l~pg~~~~p-H~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~ 168 (218)
++.+.+++++||+..+. |.|. -+|.+||++|++.+.+.++ ...+++||++++|++.+|++.|.|+++++++.-
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~-~eh~~yiL~G~G~~~~~g~-----~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~y 251 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHV-MEHGLYVLEGKGVYNLDNN-----WVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLY 251 (260)
T ss_pred CcEEEEEEECCCcccCCccccc-ceeEEEEEeceEEEEECCE-----EEEecCCCEEEECCCCCEEEEecCCCcEEEEEE
Confidence 56778899999999986 5555 5889999999999987553 889999999999999999999999999998864
Q ss_pred e
Q 027839 169 F 169 (218)
Q Consensus 169 ~ 169 (218)
-
T Consensus 252 k 252 (260)
T TIGR03214 252 K 252 (260)
T ss_pred c
Confidence 3
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.84 E-value=3.2e-08 Score=76.96 Aligned_cols=89 Identities=17% Similarity=0.172 Sum_probs=57.3
Q ss_pred ceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecC----CcEEEEEEeCCCEEEECCCCeEEEEeCC-CCCEE
Q 027839 90 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTA----DKLISKTVKKGEIYVFPKALVHFQKNNG-DKPAS 164 (218)
Q Consensus 90 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~----~~~~~~~L~~Gd~~~iP~g~~H~~~N~g-~~~a~ 164 (218)
.+.+.+-++.||...++|.|. .+|+++|++|+++..+.... |+.....+.+++.+.||.+..|...|++ .+++.
T Consensus 43 evEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlq 121 (167)
T PF02041_consen 43 EVEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQ 121 (167)
T ss_dssp SEEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EE
T ss_pred eeeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceE
Confidence 468899999999999999997 69999999999999988653 5556789999999999999999999998 48899
Q ss_pred EEEEecCCCCccchh
Q 027839 165 VISAFNSQLPGTQSI 179 (218)
Q Consensus 165 ~l~~~~s~~p~~~~~ 179 (218)
++++.+..--..+.+
T Consensus 122 vlViiSrpPvkvf~y 136 (167)
T PF02041_consen 122 VLVIISRPPVKVFIY 136 (167)
T ss_dssp EEEEEESSS--EEEE
T ss_pred EEEEecCCCeEEEEe
Confidence 998877543333333
No 24
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.71 E-value=1.9e-07 Score=75.90 Aligned_cols=85 Identities=21% Similarity=0.268 Sum_probs=58.0
Q ss_pred ccceEEEEEEEcCCcc------CCCCCCCC------CcEEEEEEEeEEEEEEEecCC----cEEEEEEeCCCEEEECCCC
Q 027839 88 TLGVSLSRIDYEAGGL------NPPHTHPR------ATEMIFVLEGELDVGFISTAD----KLISKTVKKGEIYVFPKAL 151 (218)
Q Consensus 88 ~~gis~~~~~l~pg~~------~~pH~H~~------a~E~~~Vl~G~~~v~~~~~~~----~~~~~~L~~Gd~~~iP~g~ 151 (218)
..++.+-...+.||.+ ..-|+|+. ..|+.+|++|++.+.+.+.++ +.+...+++||+++||++.
T Consensus 47 ~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~y 126 (182)
T PF06560_consen 47 KRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGY 126 (182)
T ss_dssp ---EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-
T ss_pred eeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCc
Confidence 3456677777888753 34699987 799999999999999998877 7778999999999999999
Q ss_pred eEEEEeCCCCCEEEEEEecCC
Q 027839 152 VHFQKNNGDKPASVISAFNSQ 172 (218)
Q Consensus 152 ~H~~~N~g~~~a~~l~~~~s~ 172 (218)
.|...|+|++++++.....+.
T Consensus 127 aH~tIN~g~~~L~~~~~~~~~ 147 (182)
T PF06560_consen 127 AHRTINTGDEPLVFAAWVPRD 147 (182)
T ss_dssp EEEEEE-SSS-EEEEEEEETT
T ss_pred eEEEEECCCCcEEEEEEEecC
Confidence 999999999999999887653
No 25
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.67 E-value=1.4e-07 Score=75.99 Aligned_cols=75 Identities=15% Similarity=0.254 Sum_probs=58.5
Q ss_pred EEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEecCCCC
Q 027839 96 IDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLP 174 (218)
Q Consensus 96 ~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~s~~p 174 (218)
+.=.||.....|+|+ .+|++|+++|++++.+.+ +|+.....|++||++++|+|+.|..... +....+.+-....+
T Consensus 39 vvgGpn~r~d~H~~~-tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~LviE~~r~~ 113 (177)
T PRK13264 39 VVGGPNARTDFHYDP-GEEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVIERKRPE 113 (177)
T ss_pred EEccCCcccccccCC-CceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEEEeCCCC
Confidence 334677788899998 699999999999999987 4554588999999999999999998763 44555555333333
No 26
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.67 E-value=1.8e-07 Score=74.20 Aligned_cols=72 Identities=15% Similarity=0.290 Sum_probs=55.9
Q ss_pred cCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEecCCCC
Q 027839 99 EAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLP 174 (218)
Q Consensus 99 ~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~s~~p 174 (218)
.||....+|.|+ .+|++|+++|++.+.+.+ +|+.....|++||++++|+|..|...... ..+.+.+-....+
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~flvP~gvpHsP~r~~--~t~~LvIE~~r~~ 107 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTE-EGKREDVPIREGDIFLLPPHVPHSPQRPA--GSIGLVIERKRPQ 107 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEc-CCcEEEEEECCCCEEEeCCCCCcccccCC--CcEEEEEEeCCCC
Confidence 566667789988 699999999999999877 35556789999999999999999987653 3444444333333
No 27
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.51 E-value=5.6e-07 Score=67.63 Aligned_cols=64 Identities=23% Similarity=0.364 Sum_probs=46.8
Q ss_pred CCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027839 100 AGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 169 (218)
Q Consensus 100 pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~ 169 (218)
++...++|+|+ ..|+.||++|++++.+.+. .+.+++||++++|+|.+|.....++++...+.+.
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~~~~-----~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~ 75 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHIDGQ-----EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIY 75 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEETTE-----EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEECCE-----EEEEECCEEEEecCCccEEEecCCCCCEEEEEEE
Confidence 44566889998 5999999999999987654 8999999999999999999988776677666654
No 28
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.50 E-value=9.5e-07 Score=63.26 Aligned_cols=73 Identities=25% Similarity=0.402 Sum_probs=55.5
Q ss_pred ceEEEEEEEcCCccCCC-CCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027839 90 GVSLSRIDYEAGGLNPP-HTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 168 (218)
Q Consensus 90 gis~~~~~l~pg~~~~p-H~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~ 168 (218)
.++...++|+|++.-++ +.+. ..-++||++|.+++.+.+. ...+.+|+++.+|+|-...+.|.++++++++-+
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~-~~~vF~V~~G~v~Vti~~~-----~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~ 84 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRD-NTMVFYVIKGKVEVTIHET-----SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV 84 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--S-EEEEEEEEESEEEEEETTE-----EEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred CceeEEEEeCCCCccCCcccCC-cEEEEEEEeCEEEEEEcCc-----EEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence 35678899999998665 5664 5889999999999998764 789999999999999999999999999988753
No 29
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.42 E-value=2.6e-06 Score=67.88 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=51.8
Q ss_pred cCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEecC
Q 027839 103 LNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNS 171 (218)
Q Consensus 103 ~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~s 171 (218)
+...|.|.+ +|+-|+++|++.+.+...+++.....+++||.+++|+|+.||+.-..+...+++=.|..
T Consensus 84 f~~EH~H~d-eEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~ 151 (157)
T PF03079_consen 84 FFEEHTHED-EEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKD 151 (157)
T ss_dssp HCS-EEESS--EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESS
T ss_pred hheeEecCh-heEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecC
Confidence 356899985 99999999999999988767755689999999999999999998766667777766664
No 30
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.39 E-value=4.6e-06 Score=69.81 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=51.1
Q ss_pred ceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027839 90 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 169 (218)
Q Consensus 90 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~ 169 (218)
.++...+.+.. .. -+||.+..|+.||++|++++.+.+. ++.+++||+++||+|..|.+...+ .++++.+.
T Consensus 156 ~m~aGf~~~~~-~s--f~wtl~~dEi~YVLEGe~~l~IdG~-----t~~l~pGDvlfIPkGs~~hf~tp~--~aRflyV~ 225 (233)
T PRK15457 156 SMAAGFMQWEN-AF--FPWTLNYDEIDMVLEGELHVRHEGE-----TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLYVA 225 (233)
T ss_pred ceeeEEEEEec-Cc--cceeccceEEEEEEEeEEEEEECCE-----EEEeCCCcEEEECCCCeEEecCCC--CeeEEEEE
Confidence 34554455553 22 3366667999999999999998653 899999999999999996665543 56665544
No 31
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.38 E-value=1.5e-06 Score=72.75 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=62.4
Q ss_pred eEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEec
Q 027839 91 VSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFN 170 (218)
Q Consensus 91 is~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~ 170 (218)
..+..++++||+..+.|.|. +.|+.+|++|+. .++ ...+.+||++..|.|..|...+.++++|.++++.+
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~-G~E~tlVLeG~f----~de-----~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~d 196 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHK-GFELTLVLHGAF----SDE-----TGVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLD 196 (215)
T ss_pred cEEEEEEECCCCccCCCcCC-CcEEEEEEEEEE----EcC-----CCccCCCeEEECCCCCCcCcccCCCCCeEEEEEec
Confidence 36778899999999999997 699999999995 343 34689999999999999999999889999999977
Q ss_pred CC
Q 027839 171 SQ 172 (218)
Q Consensus 171 s~ 172 (218)
..
T Consensus 197 ap 198 (215)
T TIGR02451 197 AP 198 (215)
T ss_pred CC
Confidence 53
No 32
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.37 E-value=7.4e-07 Score=64.41 Aligned_cols=66 Identities=30% Similarity=0.466 Sum_probs=51.8
Q ss_pred ceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEE
Q 027839 90 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVIS 167 (218)
Q Consensus 90 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~ 167 (218)
|..+..++++||+..+.|.|+ ..|.+|||+|++.. .+ ..+.+||.++.|+|..|.... ++.|.++.
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d----~~-----~~~~~G~~~~~p~g~~h~~~s--~~gc~~~v 88 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSD----GD-----GRYGAGDWLRLPPGSSHTPRS--DEGCLILV 88 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEE----TT-----CEEETTEEEEE-TTEEEEEEE--SSCEEEEE
T ss_pred cCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEE----CC-----ccCCCCeEEEeCCCCccccCc--CCCEEEEE
Confidence 567888999999999999998 58888999999763 21 256999999999999999984 56677664
No 33
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.33 E-value=2.2e-06 Score=75.00 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=51.1
Q ss_pred EEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCC
Q 027839 94 SRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGD 160 (218)
Q Consensus 94 ~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~ 160 (218)
.....+|..+.++|||. .-|+.|+++|++.+.+.+. ...+.+||.+++++|.+|.....++
T Consensus 29 ~~~~~~~~~m~~~HwH~-e~Ei~yv~~G~~~~~i~g~-----~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 29 EIEFRPPHIMPTSHWHG-QVEVNVPFDGDVEYLINNE-----KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred EEEeeCCCCCCCCCccc-cEEEEEecCCcEEEEECCE-----EEEEcCCcEEEEecCCcccccccCC
Confidence 33456778899999998 4999999999999887553 7899999999999999998765443
No 34
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.30 E-value=6.6e-06 Score=65.54 Aligned_cols=69 Identities=19% Similarity=0.301 Sum_probs=58.9
Q ss_pred CCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEecCCCCc
Q 027839 105 PPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPG 175 (218)
Q Consensus 105 ~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~s~~p~ 175 (218)
.-|.|. ..|+-|++.|++.+.+..++|+++.....+||.+.+|+|.-||+.-..+...+++=.|.. .+|
T Consensus 89 ~EH~H~-d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~-~~g 157 (181)
T COG1791 89 QEHLHT-DDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTE-PEG 157 (181)
T ss_pred HHhccC-CceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeC-CCC
Confidence 469997 599999999999999999999999999999999999999999997766666776666653 444
No 35
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=98.17 E-value=6.7e-06 Score=70.08 Aligned_cols=105 Identities=28% Similarity=0.346 Sum_probs=57.2
Q ss_pred cCCCCeeeeccCCCCcccCCCCcEEEEeccCCCCCCCccceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEec
Q 027839 51 ITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST 130 (218)
Q Consensus 51 ~~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~ 130 (218)
+..+|..|.-+.-.. ...+. ....+-..|.-. |.+..|+++++|...+||+|. +++-+|||+|++..+ ++
T Consensus 3 v~~~d~~w~~~~p~~---~~~~~--~~~~L~gd~~~~--g~~~~~vkf~~g~~~pph~H~-~~~~~~Vi~G~~~~~--~~ 72 (251)
T PF14499_consen 3 VHADDVKWGPLNPAR---GDKGP--GAAVLWGDPTKD--GPSGMRVKFPAGFSSPPHIHN-ADYRGTVISGELHNG--DP 72 (251)
T ss_dssp GGS--EEEE--TTS----TTS----EEEEEEEE--TT--S-EEEEEEE-TT-EE--BEES-S-EEEEEEESEEEET--TE
T ss_pred cchhhccccccCCCC---CCCCc--ceeeeecCcccC--CcceEEEEcCCCccCCCccee-eeEEEEEEEeEEEcC--CC
Confidence 567888886442111 11222 223333444333 779999999999999999997 799999999987663 22
Q ss_pred CCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEE
Q 027839 131 ADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVIS 167 (218)
Q Consensus 131 ~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~ 167 (218)
+....-|.+|..+..|+|..|.....+++.+.++.
T Consensus 73 --~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e 107 (251)
T PF14499_consen 73 --KAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFIE 107 (251)
T ss_dssp --E-----E-TTEEEEE-TT-EEEETTS-EE-EEEEE
T ss_pred --cccceecCCCceEeccCCCceeeeccCccEEEEEE
Confidence 33356799999999999999998766665565553
No 36
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.17 E-value=6.6e-06 Score=63.33 Aligned_cols=64 Identities=22% Similarity=0.353 Sum_probs=53.5
Q ss_pred CCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEec
Q 027839 104 NPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFN 170 (218)
Q Consensus 104 ~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~ 170 (218)
.--|+|.++.|++.|++|+..+.+.+++|. ...+.+||++++|+|.-|.- +..+.+..++..|.
T Consensus 56 ~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlliPAGvGH~r-l~sS~DF~VvGaYp 119 (163)
T COG4297 56 NYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLIPAGVGHCR-LHSSADFQVVGAYP 119 (163)
T ss_pred ccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEEecCccccc-ccCCCCeEEEcccC
Confidence 345899999999999999999999998887 67999999999999999975 44555666665553
No 37
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.13 E-value=3.7e-05 Score=58.41 Aligned_cols=83 Identities=23% Similarity=0.406 Sum_probs=72.3
Q ss_pred CccceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEE
Q 027839 87 NTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVI 166 (218)
Q Consensus 87 ~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l 166 (218)
.+.|+|+-...+.+|.....|+-. .-|-+|+++|++++.... +|+ .+.+++|.++.+.+.-.|..+... +++++
T Consensus 31 DgmGFS~h~T~i~aGtet~~~Ykn-HlEAvyci~G~Gev~~~~-~G~--~~~i~pGt~YaLd~hD~H~lra~~--dm~~v 104 (126)
T PF06339_consen 31 DGMGFSFHETTIYAGTETHIHYKN-HLEAVYCIEGEGEVEDLD-TGE--VHPIKPGTMYALDKHDRHYLRAKT--DMRLV 104 (126)
T ss_pred CCCCEEEEEEEEeCCCeeEEEecC-ceEEEEEEeceEEEEEcc-CCc--EEEcCCCeEEecCCCccEEEEecC--CEEEE
Confidence 356899999999999999999876 599999999999998765 566 789999999999999999998754 89999
Q ss_pred EEecCCCCc
Q 027839 167 SAFNSQLPG 175 (218)
Q Consensus 167 ~~~~s~~p~ 175 (218)
++|+..--|
T Consensus 105 CVFnPpltG 113 (126)
T PF06339_consen 105 CVFNPPLTG 113 (126)
T ss_pred EEcCCCCcC
Confidence 999976554
No 38
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.09 E-value=1.2e-05 Score=71.40 Aligned_cols=75 Identities=20% Similarity=0.353 Sum_probs=62.6
Q ss_pred eEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEec
Q 027839 91 VSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFN 170 (218)
Q Consensus 91 is~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~ 170 (218)
+....-.+.||...++|.|. +.-+.+|++|++....++ |+ ...+++||+++.|++..|...|.+++++.++...+
T Consensus 81 l~a~~q~l~pGe~~~~HRht-~sAl~~vveG~G~~t~V~--g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~lD 155 (335)
T TIGR02272 81 LYAGLQLILPGEVAPSHRHT-QSALRFIVEGKGAFTAVD--GE--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGLD 155 (335)
T ss_pred HHhhhEEeCCCCCCCccccc-cceEEEEEEcCceEEEEC--CE--EEeeeCCCEEEeCCCeeEecccCCCCcEEEEecCC
Confidence 44555678999999999997 699999999999655554 33 78999999999999999999999999988866543
No 39
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.02 E-value=4.1e-05 Score=65.67 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=44.2
Q ss_pred CccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeC
Q 027839 101 GGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNN 158 (218)
Q Consensus 101 g~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~ 158 (218)
+...++|||. ..|+.||++|++.+.+.+. .+.+.+||++++|+|..|.....
T Consensus 33 ~~~~~~H~H~-~~ei~~v~~G~~~~~i~~~-----~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHD-YYEFTLVLTGRYYQEINGK-----RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCcccc-cEEEEEEEeceEEEEECCE-----EEEECCCcEEEeCCCCccceeee
Confidence 3456899997 6999999999999988553 78999999999999999976543
No 40
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=98.02 E-value=5.4e-05 Score=62.74 Aligned_cols=75 Identities=15% Similarity=0.215 Sum_probs=64.0
Q ss_pred EEEEEEEcCCc-cCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEec
Q 027839 92 SLSRIDYEAGG-LNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFN 170 (218)
Q Consensus 92 s~~~~~l~pg~-~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~ 170 (218)
+-..+++.|+| ...+-.-++++-++||++|++++.+.+. ++.|++|+..++|+|..|.++|...+++++..+..
T Consensus 62 ~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~-----th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~rk 136 (264)
T COG3257 62 VQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGK-----THALREGGYAYLPPGSGWTLRNAQKEDSRFHWIRK 136 (264)
T ss_pred hhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCe-----EEEeccCCeEEeCCCCcceEeeccCCceEEEEEee
Confidence 44557887776 5677777888999999999999998764 89999999999999999999999999998887654
Q ss_pred C
Q 027839 171 S 171 (218)
Q Consensus 171 s 171 (218)
.
T Consensus 137 ~ 137 (264)
T COG3257 137 R 137 (264)
T ss_pred c
Confidence 3
No 41
>PRK13501 transcriptional activator RhaR; Provisional
Probab=97.99 E-value=2.2e-05 Score=67.89 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=46.4
Q ss_pred cCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCC
Q 027839 99 EAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNG 159 (218)
Q Consensus 99 ~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g 159 (218)
.+....++|||. ..|++||++|++++.+.+. .+.+++||+++||+|.+|.+...+
T Consensus 26 ~~~~~~~~H~H~-~~ei~~i~~G~~~~~i~~~-----~~~l~~g~~~~I~p~~~H~~~~~~ 80 (290)
T PRK13501 26 YPQETFVEHTHQ-FCEIVIVWRGNGLHVLNDH-----PYRITCGDVFYIQAADHHSYESVH 80 (290)
T ss_pred CCCCCCcccccc-ceeEEEEecCceEEEECCe-----eeeecCCeEEEEcCCCcccccccC
Confidence 334456799997 5999999999999988653 889999999999999999987543
No 42
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.98 E-value=4e-05 Score=59.28 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=43.6
Q ss_pred EEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCC-CEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027839 97 DYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKG-EIYVFPKALVHFQKNNGDKPASVISAF 169 (218)
Q Consensus 97 ~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~G-d~~~iP~g~~H~~~N~g~~~a~~l~~~ 169 (218)
..++|....+|.|....|+++|++|+.++.+.+..++ ....|... ..+.+|+|.+|.+.|.+++ +++++.-
T Consensus 39 ~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~-~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlLv~a 110 (131)
T PF05523_consen 39 NVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREE-EEFILDEPNKGLYIPPGVWHGIKNFSED-SVLLVLA 110 (131)
T ss_dssp S--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-E-EEEEE--TTEEEEE-TT-EEEEE---TT--EEEEEE
T ss_pred cCCCCCcccccccccccEEEEEEeCEEEEEEecCCCc-EEEEECCCCeEEEECCchhhHhhccCCC-cEEEEEc
Confidence 3455556899999999999999999999998764333 56777655 5999999999999998776 6666543
No 43
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.95 E-value=2.7e-05 Score=66.89 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=47.8
Q ss_pred CccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEE
Q 027839 101 GGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPAS 164 (218)
Q Consensus 101 g~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~ 164 (218)
+...++|||.+..|++|+++|++.+.+.+. ...+++||++++|+|..|.+....+....
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~~~-----~~~l~~g~~~ii~~~~~H~~~~~~~~~~~ 91 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQLDEH-----EYSEYAPCFFLTPPSVPHGFVTDLDADGH 91 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEECCE-----EEEecCCeEEEeCCCCccccccCCCcceE
Confidence 345789999745899999999999877553 78999999999999999998765443333
No 44
>PRK13500 transcriptional activator RhaR; Provisional
Probab=97.93 E-value=4.3e-05 Score=67.03 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=46.8
Q ss_pred CCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCC
Q 027839 100 AGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGD 160 (218)
Q Consensus 100 pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~ 160 (218)
|....++|||+ ..|++||++|++.+.+.+. .+.+++||+++||+|..|.+....+
T Consensus 57 ~~~~~~~H~H~-~~el~~v~~G~g~~~v~~~-----~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 57 PQDVFAEHTHD-FCELVIVWRGNGLHVLNDR-----PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCccccc-eEEEEEEEcCeEEEEECCE-----EEeecCCeEEEECCCCeecccccCC
Confidence 34456899997 6999999999999888664 8899999999999999999876443
No 45
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.88 E-value=3.9e-05 Score=65.52 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=46.1
Q ss_pred CCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeC
Q 027839 100 AGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNN 158 (218)
Q Consensus 100 pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~ 158 (218)
+....++|||. ..|++||++|++++.+.+. ...+++||++++|++..|.+...
T Consensus 24 ~~~~~~~H~H~-~~ei~~v~~G~~~~~i~~~-----~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 24 PQAAFPEHHHD-FHEIVIVEHGTGIHVFNGQ-----PYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred ccccccccccC-ceeEEEEecCceeeEecCC-----cccccCCcEEEECCCccchhhhc
Confidence 44567899997 5999999999999988764 78999999999999999987654
No 46
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.80 E-value=0.00022 Score=55.85 Aligned_cols=77 Identities=12% Similarity=0.235 Sum_probs=50.0
Q ss_pred EEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEecCCC
Q 027839 94 SRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQL 173 (218)
Q Consensus 94 ~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~s~~ 173 (218)
..+.=.|+.....|..+ ++|++|.++|.+.+.+.+ +|+.....+++||++.+|++.+|.-.-.. +..-+++-....
T Consensus 36 VmvVGGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e-~g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViEr~R~ 111 (151)
T PF06052_consen 36 VMVVGGPNQRTDYHINE-TEEFFYQLKGDMCLKVVE-DGKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIERKRP 111 (151)
T ss_dssp EEEEESSB--SSEEE-S-S-EEEEEEES-EEEEEEE-TTEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEEE---
T ss_pred EEEEcCCCCCCccccCC-cceEEEEEeCcEEEEEEe-CCceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEEeccC
Confidence 34556777788889987 699999999999999988 57777899999999999999999987653 344444444333
Q ss_pred C
Q 027839 174 P 174 (218)
Q Consensus 174 p 174 (218)
+
T Consensus 112 ~ 112 (151)
T PF06052_consen 112 E 112 (151)
T ss_dssp T
T ss_pred C
Confidence 3
No 47
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.78 E-value=0.0001 Score=63.25 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=46.4
Q ss_pred cCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCC
Q 027839 99 EAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNG 159 (218)
Q Consensus 99 ~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g 159 (218)
.|+...++|||. ..|+.||++|++++.+.+. .+.+++||++++|+|.+|.+...+
T Consensus 26 ~~~~~~~~H~h~-~~~l~~v~~G~~~~~i~~~-----~~~l~~g~l~li~~~~~H~~~~~~ 80 (282)
T PRK13502 26 YPQDVFAEHTHE-FCELVMVWRGNGLHVLNER-----PYRITRGDLFYIRAEDKHSYTSVN 80 (282)
T ss_pred CCCCCCCccccc-eEEEEEEecCcEEEEECCE-----EEeecCCcEEEECCCCcccccccC
Confidence 444557899997 6999999999999987553 789999999999999999986543
No 48
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.69 E-value=0.00011 Score=58.25 Aligned_cols=57 Identities=25% Similarity=0.375 Sum_probs=49.9
Q ss_pred cCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCC
Q 027839 103 LNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGD 160 (218)
Q Consensus 103 ~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~ 160 (218)
+...|.|.+ +|+-||++|++.+-+-+.+++....-++.||.+++|+|.-|++.-+.+
T Consensus 85 FfEEhlh~d-eeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~ 141 (179)
T KOG2107|consen 85 FFEEHLHED-EEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPS 141 (179)
T ss_pred HHHHhcCch-hheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCch
Confidence 347899986 999999999999999888888778889999999999999999965443
No 49
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.67 E-value=0.00019 Score=49.94 Aligned_cols=58 Identities=24% Similarity=0.361 Sum_probs=41.7
Q ss_pred EEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEE
Q 027839 92 SLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQK 156 (218)
Q Consensus 92 s~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~ 156 (218)
+...-+..||.. ..++. ..|++|||+|++++... +|. ..++++||++++|+|..-.+.
T Consensus 8 ~~g~w~~~pg~~-~~~~~--~~E~~~vleG~v~it~~--~G~--~~~~~aGD~~~~p~G~~~~w~ 65 (74)
T PF05899_consen 8 SAGVWECTPGKF-PWPYP--EDEFFYVLEGEVTITDE--DGE--TVTFKAGDAFFLPKGWTGTWE 65 (74)
T ss_dssp EEEEEEEECEEE-EEEES--SEEEEEEEEEEEEEEET--TTE--EEEEETTEEEEE-TTEEEEEE
T ss_pred EEEEEEECCcee-EeeCC--CCEEEEEEEeEEEEEEC--CCC--EEEEcCCcEEEECCCCEEEEE
Confidence 444455667653 23333 49999999999998753 455 789999999999999976654
No 50
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.65 E-value=0.00012 Score=63.43 Aligned_cols=91 Identities=20% Similarity=0.311 Sum_probs=73.2
Q ss_pred EEEeccCCCCCCCccc-e----EEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECC
Q 027839 75 VTAANVEKIPGLNTLG-V----SLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPK 149 (218)
Q Consensus 75 ~~~~~~~~~P~l~~~g-i----s~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~ 149 (218)
.+.+-.-+.|+|++.. + ....--+.||...+.|.|. .+-+-+|+||++-+..++. + ...+++||.+..|+
T Consensus 71 ~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHs-qsAlRFvveG~Ga~T~VdG--e--r~~M~~GDfilTP~ 145 (351)
T COG3435 71 VRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHN-QSALRFVVEGKGAYTVVDG--E--RTPMEAGDFILTPA 145 (351)
T ss_pred eeEEEEecCCCCCCcccccHHHHhhhheecCcccCCccccc-ccceEEEEeccceeEeecC--c--eeeccCCCEEEccC
Confidence 3444556778887664 1 1233357899999999997 5999999999998888763 3 67899999999999
Q ss_pred CCeEEEEeCCCCCEEEEEEec
Q 027839 150 ALVHFQKNNGDKPASVISAFN 170 (218)
Q Consensus 150 g~~H~~~N~g~~~a~~l~~~~ 170 (218)
+..|...|.|.+++.++-.++
T Consensus 146 w~wHdHgn~g~eP~iWlDgLD 166 (351)
T COG3435 146 WTWHDHGNEGTEPCIWLDGLD 166 (351)
T ss_pred ceeccCCCCCCCceEEEcccc
Confidence 999999999999999987654
No 51
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=97.64 E-value=0.00094 Score=54.08 Aligned_cols=84 Identities=24% Similarity=0.336 Sum_probs=59.7
Q ss_pred ceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCc--------EEEEEEeCCCEEEECCCCeEEEEeCC-C
Q 027839 90 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADK--------LISKTVKKGEIYVFPKALVHFQKNNG-D 160 (218)
Q Consensus 90 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~--------~~~~~L~~Gd~~~iP~g~~H~~~N~g-~ 160 (218)
.+++..+.+.||...+.|-|..+.-++.|++|+++-......+. .....+..|...+++++.+|.+.|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 56888899999999999999876778899999988876643322 12345678888888999999999986 8
Q ss_pred CCEEEEEEecCCC
Q 027839 161 KPASVISAFNSQL 173 (218)
Q Consensus 161 ~~a~~l~~~~s~~ 173 (218)
++++-+-+|....
T Consensus 154 ~~avSLHvYspPl 166 (175)
T PF05995_consen 154 EPAVSLHVYSPPL 166 (175)
T ss_dssp S-EEEEEEEES--
T ss_pred CCEEEEEEcCCCh
Confidence 9999999988643
No 52
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.56 E-value=0.00037 Score=61.90 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=57.0
Q ss_pred CccceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEE
Q 027839 87 NTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVI 166 (218)
Q Consensus 87 ~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l 166 (218)
.+++..+ ..+++|....+|.|. ...+++|++|+++..+.+. ....++||++++|.-..|...|. +++.++
T Consensus 248 pti~~~~--q~L~~G~~t~~~r~T-~s~Vf~VieG~G~s~ig~~-----~~~W~~gD~f~vPsW~~~~h~a~--~da~Lf 317 (335)
T TIGR02272 248 PTIGAFI--QLLPKGFRTATYRST-DATVFCVVEGRGQVRIGDA-----VFRFSPKDVFVVPSWHPVRFEAS--DDAVLF 317 (335)
T ss_pred hhHHHHH--hccCCCCCCCCcccc-ccEEEEEEeCeEEEEECCE-----EEEecCCCEEEECCCCcEecccC--CCeEEE
Confidence 4444333 567888889999997 5999999999999998664 78999999999999988887764 456555
Q ss_pred EE
Q 027839 167 SA 168 (218)
Q Consensus 167 ~~ 168 (218)
.+
T Consensus 318 ~~ 319 (335)
T TIGR02272 318 SF 319 (335)
T ss_pred Ee
Confidence 44
No 53
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.48 E-value=0.00051 Score=54.32 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=45.8
Q ss_pred eEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027839 91 VSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 168 (218)
Q Consensus 91 is~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~ 168 (218)
++...+++... +.-|.-..+|+.||++|++.+... |+ +...++||+++||+|.--.+..+ ..++++.+
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~~---G~--~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv 144 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISID---GQ--TVTAKPGDVIFIPKGSTITFSTP--DYARFFYV 144 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEET---TE--EEEEETT-EEEE-TT-EEEEEEE--EEEEEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEEC---CE--EEEEcCCcEEEECCCCEEEEecC--CCEEEEEE
Confidence 44444555543 334676689999999999988743 45 78999999999999998887544 34555544
No 54
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.35 E-value=0.0023 Score=50.24 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=49.9
Q ss_pred eEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027839 91 VSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 168 (218)
Q Consensus 91 is~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~ 168 (218)
+++...++++ ...+ |.-+.+|+-||+||++.+...+. +..-.+||+++||+|.---+.-+|. ++++-+
T Consensus 100 l~aG~m~~~~-~tf~--wtl~yDe~d~VlEGrL~V~~~g~-----tv~a~aGDvifiPKgssIefst~ge--a~flyv 167 (176)
T COG4766 100 LGAGLMEMKN-TTFP--WTLNYDEIDYVLEGRLHVRIDGR-----TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLYV 167 (176)
T ss_pred cccceeeecc-ccCc--ceecccceeEEEeeeEEEEEcCC-----eEecCCCcEEEecCCCeEEEeccce--EEEEEE
Confidence 3444456666 3333 33357999999999999987664 7889999999999999888866554 665544
No 55
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.08 E-value=0.0037 Score=50.51 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=55.4
Q ss_pred CCccCCCCCCCCC-cEEEEEEEeEEEEEEEecC------CcEEEEEEeCC--CEEEECCCCeEEEEeCCCCCEEEEE
Q 027839 100 AGGLNPPHTHPRA-TEMIFVLEGELDVGFISTA------DKLISKTVKKG--EIYVFPKALVHFQKNNGDKPASVIS 167 (218)
Q Consensus 100 pg~~~~pH~H~~a-~E~~~Vl~G~~~v~~~~~~------~~~~~~~L~~G--d~~~iP~g~~H~~~N~g~~~a~~l~ 167 (218)
+|-...+|+|..- .+++.|++|++....++-. |+.....|.+- ..++||+|..|-+.+.+++...++.
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~ 130 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYK 130 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEE
Confidence 8888999999876 8999999999998888642 35566777765 7999999999999999887644444
No 56
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.88 E-value=0.017 Score=46.92 Aligned_cols=78 Identities=15% Similarity=0.104 Sum_probs=57.6
Q ss_pred cCCccCCCCCCC--CCcEEEEEEEeEEEEEEEecC------CcEEEEEEeC--CCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027839 99 EAGGLNPPHTHP--RATEMIFVLEGELDVGFISTA------DKLISKTVKK--GEIYVFPKALVHFQKNNGDKPASVISA 168 (218)
Q Consensus 99 ~pg~~~~pH~H~--~a~E~~~Vl~G~~~v~~~~~~------~~~~~~~L~~--Gd~~~iP~g~~H~~~N~g~~~a~~l~~ 168 (218)
.+|.+..+|.|. ....+++|++|++...+++-. |+.....|.+ +..++||+|..|-+...+++....+.+
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~ 131 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYKC 131 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEeC
Confidence 567888999983 368999999999999888742 5667788877 569999999999999987663333333
Q ss_pred ecCCCCcc
Q 027839 169 FNSQLPGT 176 (218)
Q Consensus 169 ~~s~~p~~ 176 (218)
-..-+|+.
T Consensus 132 ~~~y~p~~ 139 (176)
T TIGR01221 132 TDYYAPEY 139 (176)
T ss_pred CCCcCccc
Confidence 22234543
No 57
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.88 E-value=0.007 Score=45.77 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=37.8
Q ss_pred CCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEe
Q 027839 106 PHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKN 157 (218)
Q Consensus 106 pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N 157 (218)
.+++-...|+.++|+|+.++.-. +|+ ...+++||+++||+|..=.++-
T Consensus 57 ~r~~y~~~E~chil~G~v~~T~d--~Ge--~v~~~aGD~~~~~~G~~g~W~V 104 (116)
T COG3450 57 FRVTYDEDEFCHILEGRVEVTPD--GGE--PVEVRAGDSFVFPAGFKGTWEV 104 (116)
T ss_pred ceEEcccceEEEEEeeEEEEECC--CCe--EEEEcCCCEEEECCCCeEEEEE
Confidence 34554569999999999987532 355 7899999999999999776654
No 58
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.83 E-value=0.012 Score=47.75 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=55.1
Q ss_pred cCCccCCCCCCCCC---cEEEEEEEeEEEEEEEec------CCcEEEEEEeCCC--EEEECCCCeEEEEeCCCCCEEEEE
Q 027839 99 EAGGLNPPHTHPRA---TEMIFVLEGELDVGFIST------ADKLISKTVKKGE--IYVFPKALVHFQKNNGDKPASVIS 167 (218)
Q Consensus 99 ~pg~~~~pH~H~~a---~E~~~Vl~G~~~v~~~~~------~~~~~~~~L~~Gd--~~~iP~g~~H~~~N~g~~~a~~l~ 167 (218)
.+|.+..+|+|... ..++.|++|++...+++- -|+.....|++++ .++||+|..|-+...+++...++-
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~ 130 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYK 130 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEe
Confidence 45888899998753 689999999999988863 2577889998886 799999999999998766444443
Q ss_pred EecCCCCc
Q 027839 168 AFNSQLPG 175 (218)
Q Consensus 168 ~~~s~~p~ 175 (218)
+-+.-+|+
T Consensus 131 ~t~~y~p~ 138 (176)
T PF00908_consen 131 VTNYYDPE 138 (176)
T ss_dssp ESS---GG
T ss_pred cCCccCcc
Confidence 32333444
No 59
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.78 E-value=0.0042 Score=54.01 Aligned_cols=65 Identities=22% Similarity=0.194 Sum_probs=56.1
Q ss_pred EEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027839 97 DYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 168 (218)
Q Consensus 97 ~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~ 168 (218)
-++||-...+|.|.+ +-+.-|.+|+++..+.++ .+..++||+|++|.=..|.+.|. .+++.+++.
T Consensus 267 lL~~Gf~~~~~r~t~-s~iy~V~eGsg~~~Ig~~-----rf~~~~~D~fvVPsW~~~~~~~g-s~da~LFsf 331 (351)
T COG3435 267 LLPPGFHGKAHRHTD-STIYHVVEGSGYTIIGGE-----RFDWSAGDIFVVPSWAWHEHVNG-SEDAVLFSF 331 (351)
T ss_pred hcCCcccCCceeccC-CEEEEEEecceeEEECCE-----EeeccCCCEEEccCcceeecccC-CcceEEEec
Confidence 467888888999975 889999999999988764 78999999999999999999884 777887775
No 60
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.23 E-value=0.038 Score=50.59 Aligned_cols=106 Identities=20% Similarity=0.216 Sum_probs=50.8
Q ss_pred CCCCeeeeccCCC--CcccCCCCcEEEEeccCCCCCCCccceEEEEEEEcCCcc-CCCCCCCCCcEEEEEEEeEEEEEEE
Q 027839 52 TADDFFFAGLAKP--GVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGL-NPPHTHPRATEMIFVLEGELDVGFI 128 (218)
Q Consensus 52 ~~~df~~~~~~~~--~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~-~~pH~H~~a~E~~~Vl~G~~~v~~~ 128 (218)
+++.+.|..+..+ ... .-..+..+.+ ..+.|..+ .|+.+...... ..| ...-.+.+++|++++-+|++++...
T Consensus 87 ~p~~lrw~p~~~p~~~~~-dfvdgl~ti~-g~gd~~~~-~g~ai~~y~~~-~sM~~~~f~NaDGD~Li~~q~G~l~l~Te 162 (424)
T PF04209_consen 87 TPNQLRWDPFPIPSDEPT-DFVDGLRTIA-GAGDPLSN-NGVAIHVYAAN-ASMDDRAFRNADGDELIFPQQGSLRLETE 162 (424)
T ss_dssp --S-EEE-S----TT-----TTTTEEEEE-EECECCCT-EEEEEEEEEE--S---SEEEEESSEEEEEEEEES-EEEEET
T ss_pred CccccccCCCCCCCcCCC-Cccccccccc-cCcccccc-CCcEEEEEEcC-CCCCCcceEcCCCCEEEEEEECCEEEEec
Confidence 5677777665443 111 2222322333 33444332 23333222221 233 2233456789999999999988654
Q ss_pred ecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027839 129 STADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 168 (218)
Q Consensus 129 ~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~ 168 (218)
-| ...+++||.++||+|+.+++.-. ++++.+.+
T Consensus 163 --~G---~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~ 195 (424)
T PF04209_consen 163 --FG---RLDVRPGDYVVIPRGTRFRVELP--GPARGYII 195 (424)
T ss_dssp --TE---EEEE-TTEEEEE-TT--EEEE-S--SSEEEEEE
T ss_pred --Ce---eEEEcCCeEEEECCeeEEEEEeC--CCceEEEE
Confidence 33 46799999999999999998766 45555554
No 61
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=96.01 E-value=0.055 Score=49.57 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=44.2
Q ss_pred CCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027839 104 NPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 168 (218)
Q Consensus 104 ~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~ 168 (218)
...-.+.+++|++++-+|++.+...- | ...+++||+++||+|+.+++.- .+.+++.+.+
T Consensus 146 ~~~f~NaDGD~Livpq~G~l~i~TEf--G---~L~v~pgei~VIPRG~~frv~l-~~gp~rgyi~ 204 (438)
T PRK05341 146 DRYFYNADGELLIVPQQGRLRLATEL--G---VLDVEPGEIAVIPRGVKFRVEL-PDGPARGYVC 204 (438)
T ss_pred cceeecCCCCEEEEEEeCCEEEEEec--c---ceEecCCCEEEEcCccEEEEec-CCCCeeEEEE
Confidence 33445667899999999999887553 3 4689999999999999999863 2345555443
No 62
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=96.00 E-value=0.054 Score=49.49 Aligned_cols=71 Identities=18% Similarity=0.187 Sum_probs=49.6
Q ss_pred CCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEecC--CCCccchh
Q 027839 104 NPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNS--QLPGTQSI 179 (218)
Q Consensus 104 ~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~s--~~p~~~~~ 179 (218)
...-...+++|++++-+|++.+...- | ...+++||+++||+|+.+++.-.+..+..++.++.+ +.|....+
T Consensus 140 ~~~f~NaDGD~Livpq~G~l~i~TEf--G---~L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g~~f~LPdlGpi 212 (429)
T TIGR01015 140 NRAFYNADGDFLIVPQQGALLITTEF--G---RLLVEPNEICVIPRGVRFRVTVLEPARGYICEVYGAHFQLPDLGPI 212 (429)
T ss_pred cceeeccCCCEEEEEEeCcEEEEEec--c---ceEecCCCEEEecCccEEEEeeCCCceEEEEeccCCcccCCCCCcc
Confidence 33445567899999999999987654 3 468999999999999999987655433444444442 23544433
No 63
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=95.94 E-value=0.051 Score=45.17 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=48.7
Q ss_pred EEEEEEcC-CccCCCCCCCCCcEEEEEEEeEEEEEEEecC--------C---------------------------cEEE
Q 027839 93 LSRIDYEA-GGLNPPHTHPRATEMIFVLEGELDVGFISTA--------D---------------------------KLIS 136 (218)
Q Consensus 93 ~~~~~l~p-g~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~--------~---------------------------~~~~ 136 (218)
...+.+.+ |...++|+.+ ..-++.+++|+=++.+..+. . +...
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 44566666 5567889987 58899999999888887543 0 2357
Q ss_pred EEEeCCCEEEECCCCeEEEEeCCCCC
Q 027839 137 KTVKKGEIYVFPKALVHFQKNNGDKP 162 (218)
Q Consensus 137 ~~L~~Gd~~~iP~g~~H~~~N~g~~~ 162 (218)
.+|++||+++||+|..|+.+|..+++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCCC
Confidence 89999999999999999999984343
No 64
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=95.88 E-value=0.0087 Score=51.18 Aligned_cols=76 Identities=20% Similarity=0.182 Sum_probs=45.5
Q ss_pred eEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEec
Q 027839 91 VSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFN 170 (218)
Q Consensus 91 is~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~ 170 (218)
+.-..+.++.|....+|+|. ..|-.|||+|++.++..... . ...|.+|..+.-|.+..|... .++++++++...+
T Consensus 171 ~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~~-~--~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyIRtd 245 (251)
T PF14499_consen 171 YTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGAS-N--FGTLDPGSYFGSPGHITHGIF-ITEDECVLYIRTD 245 (251)
T ss_dssp E-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEE-T--TEEEEE-TT-EE--E-------EESS-EEEEEEES
T ss_pred eeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeecccC-C--CccccCCcccccCCccccccc-ccCCCEEEEEEEC
Confidence 44556677777788999998 59999999999999654321 1 579999999999999999998 6788899887665
Q ss_pred C
Q 027839 171 S 171 (218)
Q Consensus 171 s 171 (218)
.
T Consensus 246 G 246 (251)
T PF14499_consen 246 G 246 (251)
T ss_dssp S
T ss_pred C
Confidence 4
No 65
>PLN02658 homogentisate 1,2-dioxygenase
Probab=95.88 E-value=0.072 Score=48.79 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=43.1
Q ss_pred CCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027839 106 PHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 168 (218)
Q Consensus 106 pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~ 168 (218)
.-.+.+++|++++-+|++.+...- | ...+++||+++||+|+.+++.-. +.+++.+.+
T Consensus 141 ~f~NaDGD~Livpq~G~l~i~TEf--G---~L~v~pgei~VIPRG~~frv~l~-~gp~rgyv~ 197 (435)
T PLN02658 141 AFCNADGDFLIVPQQGRLWIKTEL--G---KLQVSPGEIVVIPRGFRFAVDLP-DGPSRGYVL 197 (435)
T ss_pred eeecCCCCEEEEEEeCCEEEEEec--c---ceEecCCCEEEecCccEEEEecC-CCCeeEEEE
Confidence 345667899999999999887543 3 46889999999999999988642 345555443
No 66
>PF12852 Cupin_6: Cupin
Probab=95.65 E-value=0.088 Score=42.44 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=36.2
Q ss_pred CcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeC
Q 027839 112 ATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNN 158 (218)
Q Consensus 112 a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~ 158 (218)
..-+.+|++|+.++.+.+ .+. ...|++||++++|+|..|.+...
T Consensus 35 ~~~fh~V~~G~~~l~~~~-~~~--~~~L~~GDivllp~g~~H~l~~~ 78 (186)
T PF12852_consen 35 GASFHVVLRGSCWLRVPG-GGE--PIRLEAGDIVLLPRGTAHVLSSD 78 (186)
T ss_pred ceEEEEEECCeEEEEEcC-CCC--eEEecCCCEEEEcCCCCeEeCCC
Confidence 367889999999998654 123 78999999999999999999543
No 67
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=95.53 E-value=0.079 Score=44.34 Aligned_cols=70 Identities=20% Similarity=0.304 Sum_probs=42.5
Q ss_pred EEEcCCccCCCCCCCCCcEEEEEEE-eEEEEEEEecC----------------CcE------EEEEEeCCCEEEECCCCe
Q 027839 96 IDYEAGGLNPPHTHPRATEMIFVLE-GELDVGFISTA----------------DKL------ISKTVKKGEIYVFPKALV 152 (218)
Q Consensus 96 ~~l~pg~~~~pH~H~~a~E~~~Vl~-G~~~v~~~~~~----------------~~~------~~~~L~~Gd~~~iP~g~~ 152 (218)
+.+.+|...|+|.|..-.|=++.-- |.+.+.+...+ |.. -...|.||+.+.+++|..
T Consensus 92 m~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~y 171 (225)
T PF07385_consen 92 MIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGIY 171 (225)
T ss_dssp EEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTEE
T ss_pred eeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCCe
Confidence 5678999999999988777666665 46666655432 111 146899999999999999
Q ss_pred EEEEeCCCCCEEEEE
Q 027839 153 HFQKNNGDKPASVIS 167 (218)
Q Consensus 153 H~~~N~g~~~a~~l~ 167 (218)
|++...+.. +++.
T Consensus 172 H~Fw~e~g~--vLig 184 (225)
T PF07385_consen 172 HWFWGEGGD--VLIG 184 (225)
T ss_dssp EEEEE-TTS--EEEE
T ss_pred eeEEecCCC--EEEE
Confidence 999875443 4444
No 68
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.43 E-value=0.076 Score=39.57 Aligned_cols=64 Identities=25% Similarity=0.409 Sum_probs=46.7
Q ss_pred CccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECC--CCeEEEEeCCC-CCEEEEEE
Q 027839 101 GGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPK--ALVHFQKNNGD-KPASVISA 168 (218)
Q Consensus 101 g~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~--g~~H~~~N~g~-~~a~~l~~ 168 (218)
+...++|-|.+-+-+-||++|+++-. +..|. ...|++||+-++-+ |+.|...|.++ +++..+-+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQl 105 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLGN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQL 105 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETTSE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCCCC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEE
Confidence 45568999987666789999998654 44454 57899999888876 67999999877 67776643
No 69
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=95.41 E-value=0.19 Score=42.07 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=57.2
Q ss_pred ccceEEEEEEEcCCccCC-CCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEE
Q 027839 88 TLGVSLSRIDYEAGGLNP-PHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVI 166 (218)
Q Consensus 88 ~~gis~~~~~l~pg~~~~-pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l 166 (218)
..++-+..+.++||+.++ ..+|-. +-=+|||||+....+... ...+++||.+.+-+-.+.+...-|....+.+
T Consensus 179 r~Dmhv~ivsFePGa~ip~aEtHvm-EHGlyvLeGk~vYrLn~d-----wv~V~aGD~mwm~A~cpQacyagG~g~frYL 252 (264)
T COG3257 179 RFDMHVHIVSFEPGASIPYAETHVM-EHGLYVLEGKGVYRLNNN-----WVPVEAGDYIWMGAYCPQACYAGGRGAFRYL 252 (264)
T ss_pred CcceEEEEEEecCCcccchhhhhhh-hcceEEEecceEEeecCc-----eEEeecccEEEeeccChhhhccCCCCceEEE
Confidence 346778888999999876 355642 445899999998877553 7899999999999988888877776666655
Q ss_pred E
Q 027839 167 S 167 (218)
Q Consensus 167 ~ 167 (218)
.
T Consensus 253 l 253 (264)
T COG3257 253 L 253 (264)
T ss_pred E
Confidence 4
No 70
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.32 E-value=0.17 Score=44.78 Aligned_cols=64 Identities=14% Similarity=0.225 Sum_probs=42.9
Q ss_pred EEEEcCCc--cCCCCCCCCCcEEEEEEEeEEEEEEEecC------------------CcEEEEEEeCCCEEEECCCCeEE
Q 027839 95 RIDYEAGG--LNPPHTHPRATEMIFVLEGELDVGFISTA------------------DKLISKTVKKGEIYVFPKALVHF 154 (218)
Q Consensus 95 ~~~l~pg~--~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~------------------~~~~~~~L~~Gd~~~iP~g~~H~ 154 (218)
.+-+.|++ ...||+-. .+-+++-++|+=+..+.... ......+|++||++|+|+|.+|.
T Consensus 117 n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~ 195 (319)
T PF08007_consen 117 NAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQ 195 (319)
T ss_dssp EEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEE
T ss_pred EEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCC
Confidence 34466666 68899886 47788888898777666521 12347899999999999999999
Q ss_pred EEeCC
Q 027839 155 QKNNG 159 (218)
Q Consensus 155 ~~N~g 159 (218)
....+
T Consensus 196 ~~~~~ 200 (319)
T PF08007_consen 196 AVTTD 200 (319)
T ss_dssp EEESS
T ss_pred CCCCC
Confidence 99887
No 71
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=95.32 E-value=0.097 Score=43.02 Aligned_cols=89 Identities=19% Similarity=0.195 Sum_probs=68.8
Q ss_pred CCCCcEEEEeccCCCCCCCccceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEEC
Q 027839 69 NSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFP 148 (218)
Q Consensus 69 ~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP 148 (218)
-..|+.+..+....-+ ...++++.+.||...+-|+|- +.|...|++|. +.+++| .+.+||.+.-+
T Consensus 111 ~~~G~rv~~v~l~~dd-----s~~V~llki~~g~s~P~HtH~-G~E~t~vl~G~----~sde~G-----~y~vgD~~~~d 175 (216)
T COG3806 111 LGPGGRVEPVRLPTDD-----SRRVALLKIEPGRSFPDHTHV-GIERTAVLEGA----FSDENG-----EYLVGDFTLAD 175 (216)
T ss_pred ecCCcceeecccCCCC-----CceeEEEEeccCccccccccc-ceEEEEEEeec----cccCCC-----ccccCceeecC
Confidence 4455555555443322 457999999999999999997 69999999994 556644 67899999999
Q ss_pred CCCeEEEEeCCCCCEEEEEEecCC
Q 027839 149 KALVHFQKNNGDKPASVISAFNSQ 172 (218)
Q Consensus 149 ~g~~H~~~N~g~~~a~~l~~~~s~ 172 (218)
.+..|.-+-..+.+|..+++...+
T Consensus 176 ~~v~H~piv~~~~eClcl~al~~~ 199 (216)
T COG3806 176 GTVQHSPIVLPPGECLCLAALDGP 199 (216)
T ss_pred CccccccccCCCCCceEEEEcCCC
Confidence 999999766677888888887653
No 72
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=95.19 E-value=0.082 Score=45.47 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=39.2
Q ss_pred CCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCC
Q 027839 105 PPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNG 159 (218)
Q Consensus 105 ~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g 159 (218)
.||-+. +.++.++++|++.+...+ + .+.+++||++++|+|.+|.+....
T Consensus 43 r~~~~~-~~~i~~~~~G~~~~~~~~---~--~~~~~~g~~i~i~p~~~h~~~~~~ 91 (290)
T PRK10572 43 RPLGMK-GYILNLTIRGQGVIFNGG---R--AFVCRPGDLLLFPPGEIHHYGRHP 91 (290)
T ss_pred cCCCcc-ceEEEEEEeccEEEecCC---e--eEecCCCCEEEECCCCceeeccCC
Confidence 355544 578999999999987544 3 789999999999999999876543
No 73
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=94.71 E-value=0.15 Score=41.65 Aligned_cols=65 Identities=23% Similarity=0.224 Sum_probs=40.9
Q ss_pred EEEEcCCccCCCCCCCCCcEEEEE-EEeEEEEEEEecC----------------CcE------EEEEEeCCCEEEECCCC
Q 027839 95 RIDYEAGGLNPPHTHPRATEMIFV-LEGELDVGFISTA----------------DKL------ISKTVKKGEIYVFPKAL 151 (218)
Q Consensus 95 ~~~l~pg~~~~pH~H~~a~E~~~V-l~G~~~v~~~~~~----------------~~~------~~~~L~~Gd~~~iP~g~ 151 (218)
.+.+.+|...|+|.|.+-.|=++= =.|++.+.....+ |.. -...|+||+.+.+|+|.
T Consensus 90 iM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~ 169 (225)
T COG3822 90 IMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPGL 169 (225)
T ss_pred eEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCCc
Confidence 356789999999999854442211 1122322222111 111 14679999999999999
Q ss_pred eEEEEeCC
Q 027839 152 VHFQKNNG 159 (218)
Q Consensus 152 ~H~~~N~g 159 (218)
.|+++..+
T Consensus 170 ~HsFwae~ 177 (225)
T COG3822 170 YHSFWAEE 177 (225)
T ss_pred eeeeeecC
Confidence 99998743
No 74
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.42 E-value=0.23 Score=43.06 Aligned_cols=61 Identities=11% Similarity=0.032 Sum_probs=47.4
Q ss_pred cCCccCCCCCC-CCCcEEEEEEEeEEEEEEEecCCcE-EEEEEeCC-CEEEECCCCeEEEEeCC
Q 027839 99 EAGGLNPPHTH-PRATEMIFVLEGELDVGFISTADKL-ISKTVKKG-EIYVFPKALVHFQKNNG 159 (218)
Q Consensus 99 ~pg~~~~pH~H-~~a~E~~~Vl~G~~~v~~~~~~~~~-~~~~L~~G-d~~~iP~g~~H~~~N~g 159 (218)
-|++...+|.| +..-|.+.|++|++.+.+.++++.. ....+.+. +.-++|++..|.....+
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s 82 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAAS 82 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcC
Confidence 36678899999 5678999999999999988877643 33456554 56579999999998753
No 75
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=94.37 E-value=0.38 Score=39.82 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=61.0
Q ss_pred CccceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCC----------cEEEEE------E-eCCC-EEEEC
Q 027839 87 NTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD----------KLISKT------V-KKGE-IYVFP 148 (218)
Q Consensus 87 ~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~----------~~~~~~------L-~~Gd-~~~iP 148 (218)
++..+++..+.+++|..+|+|-||+=+-+.-|+.|++.+...+--. +....+ + .+++ ++..|
T Consensus 40 E~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P 119 (200)
T PF07847_consen 40 EDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYP 119 (200)
T ss_pred ECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEcc
Confidence 3446889999999999999999998777777999999997664211 111111 2 2223 55566
Q ss_pred C--CCeEEEEeCCCCCEEEEEEecCC
Q 027839 149 K--ALVHFQKNNGDKPASVISAFNSQ 172 (218)
Q Consensus 149 ~--g~~H~~~N~g~~~a~~l~~~~s~ 172 (218)
. |-+|.+.+.+ +++.++-++...
T Consensus 120 ~~ggNiH~f~a~~-~p~AflDIL~PP 144 (200)
T PF07847_consen 120 TSGGNIHEFTALT-GPCAFLDILAPP 144 (200)
T ss_pred CCCCeeEEEEeCC-CCeEEEEEccCC
Confidence 5 4899999986 789999988754
No 76
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=94.32 E-value=0.072 Score=44.23 Aligned_cols=56 Identities=18% Similarity=0.365 Sum_probs=47.3
Q ss_pred EcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEE
Q 027839 98 YEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQ 155 (218)
Q Consensus 98 l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~ 155 (218)
=.|+....-|..+ ..|++|-.+|.+.+-++++ ++.....+++||++.+|+..+|.-
T Consensus 40 GGPN~RkdyHiee-geE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSP 95 (279)
T KOG3995|consen 40 GGPNTRKDYHIEE-GEEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSP 95 (279)
T ss_pred cCCCcccccccCC-cchhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCCh
Confidence 3555666778887 6999999999999999884 555688999999999999999964
No 77
>COG1741 Pirin-related protein [General function prediction only]
Probab=94.13 E-value=0.25 Score=42.94 Aligned_cols=71 Identities=21% Similarity=0.389 Sum_probs=53.6
Q ss_pred EEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECC--CCeEEEEeC--CCCCEEEEEEe
Q 027839 95 RIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPK--ALVHFQKNN--GDKPASVISAF 169 (218)
Q Consensus 95 ~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~--g~~H~~~N~--g~~~a~~l~~~ 169 (218)
...+.||...+||-|.+=+-+.||++|+++-. +..|. ...+++||+-++-+ |..|.-.|. .++++..+-+.
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~Gn--~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlW 122 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLGN--KGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLW 122 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCCc--eeeecccceeEEcCCCceeecccCCccCCCccceeeee
Confidence 34688999999999987666789999998764 33444 57899999888876 679999886 33456665543
No 78
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=94.07 E-value=0.37 Score=41.49 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=46.0
Q ss_pred ceEEEEEEEcCCccC-----CCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCC
Q 027839 90 GVSLSRIDYEAGGLN-----PPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGD 160 (218)
Q Consensus 90 gis~~~~~l~pg~~~-----~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~ 160 (218)
++.+.++...+.... ..|.+.+...++++++|++.+...+ + ...+++||++++|++.+|.+.-.++
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~g---~--~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQDD---R--QVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEECC---e--EEEEcCCCEEEEECCCCcEeecCCC
Confidence 456666666555322 1344444456778899999887654 3 7899999999999999998765443
No 79
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=93.31 E-value=0.36 Score=35.05 Aligned_cols=62 Identities=27% Similarity=0.434 Sum_probs=29.8
Q ss_pred EEEcCCccCCCCCCCCCc--EEEEEE--EeEEEEEEEecC------------------CcEEEEEEeCCCEEEECCCCeE
Q 027839 96 IDYEAGGLNPPHTHPRAT--EMIFVL--EGELDVGFISTA------------------DKLISKTVKKGEIYVFPKALVH 153 (218)
Q Consensus 96 ~~l~pg~~~~pH~H~~a~--E~~~Vl--~G~~~v~~~~~~------------------~~~~~~~L~~Gd~~~iP~g~~H 153 (218)
...++|+...+|.|+++. -+.||- ++...+.+.++. ........++||+++||+-+.|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 345688888999998632 233332 122222333221 1234567899999999999999
Q ss_pred EEEe
Q 027839 154 FQKN 157 (218)
Q Consensus 154 ~~~N 157 (218)
...-
T Consensus 85 ~v~p 88 (101)
T PF13759_consen 85 GVPP 88 (101)
T ss_dssp EE--
T ss_pred eccC
Confidence 9854
No 80
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=93.00 E-value=0.26 Score=36.01 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=21.5
Q ss_pred cEEEEEEeCCCEEEECCCCeEEEEeCCCC
Q 027839 133 KLISKTVKKGEIYVFPKALVHFQKNNGDK 161 (218)
Q Consensus 133 ~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~ 161 (218)
+....+.++||.+++|+|..|+..|.|..
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCce
Confidence 34578889999999999999999999863
No 81
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=92.82 E-value=1.3 Score=32.19 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=43.4
Q ss_pred EEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027839 96 IDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 169 (218)
Q Consensus 96 ~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~ 169 (218)
-.+.||. .+....+.|+.-|++|++++.+.+++ . ....++|+.+.+|++.-..++-. +...+++.|
T Consensus 28 GVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~~-e--w~~~~aGesF~VpanssF~v~v~--~~~~Y~C~y 93 (94)
T PF06865_consen 28 GVMLPGE---YTFGTSAPERMEVVSGELEVKLPGED-E--WQTYSAGESFEVPANSSFDVKVK--EPTAYLCSY 93 (94)
T ss_dssp EEE-SEC---EEEEESS-EEEEEEESEEEEEETT-S-S---EEEETT-EEEE-TTEEEEEEES--S-EEEEEEE
T ss_pred EEEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCCc-c--cEEeCCCCeEEECCCCeEEEEEC--cceeeEEEe
Confidence 3455654 33344579999999999999986532 2 68999999999999998888764 455555543
No 82
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=92.65 E-value=0.58 Score=37.39 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=51.6
Q ss_pred eEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCC------cEEEEEEeCCCEEEECCCCeEEEEeCCCCCEE
Q 027839 91 VSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD------KLISKTVKKGEIYVFPKALVHFQKNNGDKPAS 164 (218)
Q Consensus 91 is~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~------~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~ 164 (218)
+++..+++.||...++|-|- -.-++=|+.|.-+-.+..-++ ....+.+.+|++- +-+|.+|.+.|.+..+.-
T Consensus 73 ltV~~~t~~PG~~~p~HnH~-~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sdrs~ 150 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHL-MWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSDRSG 150 (191)
T ss_pred EEEEEEEeCCCcccCCcccc-hheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCCccc
Confidence 57889999999999999996 477777888865544331111 1123456677766 444777777777766554
Q ss_pred EEEEecC
Q 027839 165 VISAFNS 171 (218)
Q Consensus 165 ~l~~~~s 171 (218)
.+.++-.
T Consensus 151 aiHvy~a 157 (191)
T COG5553 151 AIHVYLA 157 (191)
T ss_pred eEEEEec
Confidence 5555443
No 83
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=92.33 E-value=1.4 Score=31.24 Aligned_cols=59 Identities=20% Similarity=0.108 Sum_probs=41.6
Q ss_pred ccCCCCCCCC-CcEEEEEEEeEEEEEEEecCCc--EEEEEEeCCCEEEECCCCeEEEEeCCC
Q 027839 102 GLNPPHTHPR-ATEMIFVLEGELDVGFISTADK--LISKTVKKGEIYVFPKALVHFQKNNGD 160 (218)
Q Consensus 102 ~~~~pH~H~~-a~E~~~Vl~G~~~v~~~~~~~~--~~~~~L~~Gd~~~iP~g~~H~~~N~g~ 160 (218)
++...|.-.. .-..+.|++|++++...++.|. .....+.+|+..+|++...|.+.-.++
T Consensus 14 ~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 14 ALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp GGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred HHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 3455554432 3346789999999999886542 235678999999999999999987654
No 84
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.32 E-value=2 Score=38.57 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=45.1
Q ss_pred ccC-CCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEE
Q 027839 102 GLN-PPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVIS 167 (218)
Q Consensus 102 ~~~-~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~ 167 (218)
+|. ..-..-+.+|++++-+|++++...-. ..++++||..+||+|+....+-...+ ++.+.
T Consensus 135 sm~~~~f~NADge~Livpq~G~l~l~te~G-----~l~v~pgeiavIPRG~~frve~~~~~-~rgy~ 195 (427)
T COG3508 135 SMTKRFFRNADGELLIVPQQGELRLKTELG-----VLEVEPGEIAVIPRGTTFRVELKDGE-ARGYG 195 (427)
T ss_pred cchhhhhhcCCCCEEEEeecceEEEEEeec-----eEEecCCcEEEeeCCceEEEEecCCc-eEEEE
Confidence 444 44456678999999999999876543 57899999999999999998765444 44443
No 85
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=92.24 E-value=0.9 Score=37.62 Aligned_cols=77 Identities=21% Similarity=0.318 Sum_probs=43.8
Q ss_pred EEEEEEcCCccCCCCCCCCC--cEEEEEE--EeEEEEEEEecCC------------------cEEEEEEeCCCEEEECCC
Q 027839 93 LSRIDYEAGGLNPPHTHPRA--TEMIFVL--EGELDVGFISTAD------------------KLISKTVKKGEIYVFPKA 150 (218)
Q Consensus 93 ~~~~~l~pg~~~~pH~H~~a--~E~~~Vl--~G~~~v~~~~~~~------------------~~~~~~L~~Gd~~~iP~g 150 (218)
.....+++|+....|.|+++ +-+.||. +|...+.+.++.- ......-++|++++||+-
T Consensus 98 ~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~ 177 (201)
T TIGR02466 98 AWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESW 177 (201)
T ss_pred EeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCC
Confidence 44456789999999999974 2234444 1222222222110 011234489999999999
Q ss_pred CeEEEE-eCCCCCEEEEEEec
Q 027839 151 LVHFQK-NNGDKPASVISAFN 170 (218)
Q Consensus 151 ~~H~~~-N~g~~~a~~l~~~~ 170 (218)
+.|... |.++++ ++-..||
T Consensus 178 L~H~v~p~~~~~~-RISiSFN 197 (201)
T TIGR02466 178 LRHEVPPNESEEE-RISVSFN 197 (201)
T ss_pred CceecCCCCCCCC-EEEEEEe
Confidence 999875 444333 3333443
No 86
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=92.23 E-value=0.91 Score=33.26 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=43.1
Q ss_pred EEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027839 94 SRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 169 (218)
Q Consensus 94 ~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~ 169 (218)
..+.++||+.......+...-++||++|++.+ .+ . ...+.+|+++++..|..-.+.+.+ +.++++.+-
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v--~~---~--~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~ 69 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEV--GG---E--EDPLEAGQLVVLEDGDEIELTAGE-EGARFLLLG 69 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEE--TT---T--TEEEETTEEEEE-SECEEEEEESS-SSEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEE--CC---C--cceECCCcEEEECCCceEEEEECC-CCcEEEEEE
Confidence 45778888764322222346789999999765 22 2 257999999999977666666653 677776653
No 87
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=92.06 E-value=0.56 Score=37.35 Aligned_cols=82 Identities=21% Similarity=0.372 Sum_probs=45.7
Q ss_pred cCCCCCCCc-cce-EEEEEEEcCCccCCCCCCCCCcE----EEEEE-EeEEEEEEEecCCcEEEEEEeCCCEEEECCCCe
Q 027839 80 VEKIPGLNT-LGV-SLSRIDYEAGGLNPPHTHPRATE----MIFVL-EGELDVGFISTADKLISKTVKKGEIYVFPKALV 152 (218)
Q Consensus 80 ~~~~P~l~~-~gi-s~~~~~l~pg~~~~pH~H~~a~E----~~~Vl-~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~ 152 (218)
..++|.... ..+ .+....+.||+.+.||.-+.... +-+++ .+...+.+. ++ ....++|+++++.-...
T Consensus 67 l~~lp~~~~~~~~~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~---~~--~~~w~~G~~~~fD~s~~ 141 (163)
T PF05118_consen 67 LEQLPGVTGGCPLGRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVG---GE--TRHWREGECWVFDDSFE 141 (163)
T ss_dssp CCCSHHHHCSTTCEEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEET---TE--EEB--CTEEEEE-TTS-
T ss_pred HHhCcccccccchhhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEEC---Ce--EEEeccCcEEEEeCCEE
Confidence 445554432 222 34555789999999998764222 11122 122333332 23 78899999999999999
Q ss_pred EEEEeCCCCCEEEE
Q 027839 153 HFQKNNGDKPASVI 166 (218)
Q Consensus 153 H~~~N~g~~~a~~l 166 (218)
|...|.|+++-+.+
T Consensus 142 H~~~N~~~~~Rv~L 155 (163)
T PF05118_consen 142 HEVWNNGDEDRVVL 155 (163)
T ss_dssp EEEEESSSS-EEEE
T ss_pred EEEEeCCCCCEEEE
Confidence 99999987654444
No 88
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=91.98 E-value=1.7 Score=33.51 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=44.0
Q ss_pred eEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCC
Q 027839 91 VSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKP 162 (218)
Q Consensus 91 is~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~ 162 (218)
+.+.++.......+...-+.+..-+.+.++|+..+...+ + ...+.+||+++++++.++.+...++..
T Consensus 34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~g---~--~~~~~pg~~~l~d~~~~~~~~~~~~~~ 100 (172)
T PF14525_consen 34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQGG---R--EVELAPGDVVLLDPGQPYRLEFSAGCR 100 (172)
T ss_pred EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEECC---E--EEEEcCCeEEEEcCCCCEEEEECCCcc
Confidence 455655555333222221233455667778888877654 3 789999999999999999987654433
No 89
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.80 E-value=0.11 Score=48.16 Aligned_cols=59 Identities=17% Similarity=0.332 Sum_probs=44.2
Q ss_pred cCCc-cCCCCCCCCCcEEEEEEEeEEEEEEEecC-------------------C-cEEEEEEeCCCEEEECCCCeEEEEe
Q 027839 99 EAGG-LNPPHTHPRATEMIFVLEGELDVGFISTA-------------------D-KLISKTVKKGEIYVFPKALVHFQKN 157 (218)
Q Consensus 99 ~pg~-~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~-------------------~-~~~~~~L~~Gd~~~iP~g~~H~~~N 157 (218)
+||+ ..+|||-. -+-+++-+||+=.+.+..+. | .+....|++||++|||+|.+|....
T Consensus 325 PagSqGfaPHyDd-IeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t 403 (629)
T KOG3706|consen 325 PAGSQGFAPHYDD-IEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADT 403 (629)
T ss_pred CCCCCCCCCchhh-hhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccc
Confidence 5664 57899986 47778889998776666442 1 2345789999999999999998754
Q ss_pred C
Q 027839 158 N 158 (218)
Q Consensus 158 ~ 158 (218)
.
T Consensus 404 ~ 404 (629)
T KOG3706|consen 404 P 404 (629)
T ss_pred c
Confidence 3
No 90
>PRK10579 hypothetical protein; Provisional
Probab=91.74 E-value=2.8 Score=30.49 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=46.0
Q ss_pred EEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEE
Q 027839 97 DYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISA 168 (218)
Q Consensus 97 ~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~ 168 (218)
.+.||. .+.-..+.|+.-|++|++++.+.+++ ....+++|+.+.+|++.-..++.. +...+++.
T Consensus 29 Vm~pGe---y~F~T~~~E~MeivsG~l~V~Lpg~~---ew~~~~aG~sF~VpanssF~l~v~--~~t~Y~C~ 92 (94)
T PRK10579 29 VMAEGE---YTFSTAEPEEMTVISGALNVLLPGAT---DWQVYEAGEVFNVPGHSEFHLQVA--EPTSYLCR 92 (94)
T ss_pred EEeeeE---EEEcCCCcEEEEEEeeEEEEECCCCc---ccEEeCCCCEEEECCCCeEEEEEC--cceeeEEE
Confidence 344544 23334479999999999999886632 268999999999999998877654 34444443
No 91
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=91.67 E-value=1.5 Score=38.03 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=54.3
Q ss_pred ceEEEEEEEcCCc---cCCCCCCCCCcEEEE-E--EEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCE
Q 027839 90 GVSLSRIDYEAGG---LNPPHTHPRATEMIF-V--LEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPA 163 (218)
Q Consensus 90 gis~~~~~l~pg~---~~~pH~H~~a~E~~~-V--l~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a 163 (218)
.+-+....+.||+ ..|||.|.+..|..+ . -++.-.+.+.++-++..-..++-+|+++.|+=.+|.-. |...-
T Consensus 174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g~--gt~~y 251 (276)
T PRK00924 174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSGV--GTSNY 251 (276)
T ss_pred cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecCc--Ccccc
Confidence 4566667778987 358999996667333 2 22222222222222322378999999999999999864 55667
Q ss_pred EEEEEecCCCCc
Q 027839 164 SVISAFNSQLPG 175 (218)
Q Consensus 164 ~~l~~~~s~~p~ 175 (218)
.++.....+|-.
T Consensus 252 ~fiw~m~gen~~ 263 (276)
T PRK00924 252 TFIWGMAGENQD 263 (276)
T ss_pred EEEEEecccCcC
Confidence 788877666543
No 92
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=91.64 E-value=1 Score=41.10 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=41.6
Q ss_pred ceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEE
Q 027839 90 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQK 156 (218)
Q Consensus 90 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~ 156 (218)
.+.+.++++..+... ...+..++++|++|++++... +. +..|++|+++++|++......
T Consensus 320 ~F~~~~~~l~~~~~~---~~~~~~~Illv~~G~~~i~~~---~~--~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQPTT---LSQQSAAILFCVEGEAVLWKG---EQ--QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCceEE---ecCCCcEEEEEEcceEEEEeC---Ce--EEEECCCCEEEEeCCCccEEE
Confidence 466777777554222 122357999999999998542 22 578999999999998776654
No 93
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=90.85 E-value=1.7 Score=37.99 Aligned_cols=60 Identities=23% Similarity=0.226 Sum_probs=42.3
Q ss_pred cceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEE
Q 027839 89 LGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQK 156 (218)
Q Consensus 89 ~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~ 156 (218)
..+.+.++++..... ...+ ....+++|++|++++...+ . ...|++|+++++|++......
T Consensus 233 ~~F~~~~~~~~~~~~--~~~~-~~~~il~v~~G~~~i~~~~---~--~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 233 EYFSVYKWDISGKAE--FIQQ-QSALILSVLEGSGRIKSGG---K--TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CCeEEEEEEeCCcee--eccC-CCcEEEEEEcceEEEEECC---E--EEEEecccEEEEccCCccEEE
Confidence 356777777764321 1123 3688999999999886422 2 678999999999999865544
No 94
>PLN02288 mannose-6-phosphate isomerase
Probab=90.33 E-value=0.88 Score=41.55 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=40.6
Q ss_pred ceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCC
Q 027839 90 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKAL 151 (218)
Q Consensus 90 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~ 151 (218)
.+++.++++.++.......+ +..++++|++|++++..... . ....|++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~~~~--~-~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLSTGSS--E-DGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEecCCc--c-ceEEEeceeEEEEeCCC
Confidence 57788888887754222223 35889999999998853321 1 13569999999999864
No 95
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.68 E-value=2.2 Score=38.43 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=51.3
Q ss_pred ceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEe
Q 027839 90 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAF 169 (218)
Q Consensus 90 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~ 169 (218)
.+.+.++++++|...-.-.-+ ..-+++|++|++++.... +. ...+++||+++||+...-.+.. .+++...+-++
T Consensus 332 eF~v~~~~v~~g~~~~~~~~~-~~SIllv~~G~g~l~~~t--~~--~~~v~rG~V~fI~a~~~i~~~~-~sd~~~~yrAf 405 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGVD-GPSILLVLKGSGILKTDT--DS--KILVNRGDVLFIPANHPIHLSS-SSDPFLGYRAF 405 (411)
T ss_pred ceeEEEeecCCCceEEeecCC-CceEEEEEecceEEecCC--CC--ceeeccCcEEEEcCCCCceeec-cCcceeeeecc
Confidence 578888888886543222233 578999999999887652 22 6789999999999998776643 34444444343
No 96
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=89.09 E-value=2.1 Score=28.69 Aligned_cols=57 Identities=7% Similarity=-0.031 Sum_probs=41.0
Q ss_pred EEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEe
Q 027839 96 IDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKN 157 (218)
Q Consensus 96 ~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N 157 (218)
+++.||....++... ...+.|.+|++.+.... ....+.|++||.+.+++|..-++..
T Consensus 2 ~~L~~g~~~~lr~~~--~~~l~v~~G~vWlT~~g---~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAAA--GQRLRVESGRVWLTREG---DPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcCC--CcEEEEccccEEEECCC---CCCCEEECCCCEEEeCCCCEEEEEe
Confidence 356677666665443 34499999998887643 3347899999999999998766654
No 97
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=88.66 E-value=1.1 Score=40.39 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=45.8
Q ss_pred EEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCC-----------------cEEEEEEeCCCEEEECCCCeEEEEeC
Q 027839 97 DYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD-----------------KLISKTVKKGEIYVFPKALVHFQKNN 158 (218)
Q Consensus 97 ~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~-----------------~~~~~~L~~Gd~~~iP~g~~H~~~N~ 158 (218)
-..+||.+.+|+-+ .+-+++-..|+=+..+....+ ......|.+||+.|||+|.+|+-...
T Consensus 125 ~a~~GGgvg~H~D~-YDVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 125 FAAPGGGVGPHFDQ-YDVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred EecCCCccCccccc-hheeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCccc
Confidence 56789999999997 477777777776666654311 01246799999999999999998765
No 98
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=88.00 E-value=11 Score=29.34 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=54.5
Q ss_pred eEEEEEEEcCCccCCCCCCCCCcEEEEEEEe-EEEEEEEecCCcEEEEEEeC----CC--EEEECCCCeEEEEeCCCCCE
Q 027839 91 VSLSRIDYEAGGLNPPHTHPRATEMIFVLEG-ELDVGFISTADKLISKTVKK----GE--IYVFPKALVHFQKNNGDKPA 163 (218)
Q Consensus 91 is~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G-~~~v~~~~~~~~~~~~~L~~----Gd--~~~iP~g~~H~~~N~g~~~a 163 (218)
.+....-+.++....+|.- +++|+++...| .+++.+.+++|+.....|.. |+ .++||+|.....+..+...-
T Consensus 41 ~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~y 119 (139)
T PF06172_consen 41 STSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEGDY 119 (139)
T ss_dssp -EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESSSE
T ss_pred ceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCCCCE
Confidence 3455556778777777765 47999999998 69999999888876667743 43 78999999988865555555
Q ss_pred EEEEE
Q 027839 164 SVISA 168 (218)
Q Consensus 164 ~~l~~ 168 (218)
.+++.
T Consensus 120 ~Lvsc 124 (139)
T PF06172_consen 120 SLVSC 124 (139)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55543
No 99
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=85.59 E-value=4.9 Score=32.19 Aligned_cols=79 Identities=9% Similarity=0.046 Sum_probs=55.0
Q ss_pred ceEEEEEEEc--CCccCCCCCCCCCcEEEEEEEeEEEEEEEecCC-----cEEEEEEeCCCEEEECCCCeEEEEeCCCCC
Q 027839 90 GVSLSRIDYE--AGGLNPPHTHPRATEMIFVLEGELDVGFISTAD-----KLISKTVKKGEIYVFPKALVHFQKNNGDKP 162 (218)
Q Consensus 90 gis~~~~~l~--pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~-----~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~ 162 (218)
++++.|..-. |-.+..+-.|+..+|.++-+.|+-.+.++.+++ +...+...+|+.+.+-+|.+|...-.=+.+
T Consensus 55 ~isifr~~~~~~p~~~~~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~ 134 (162)
T PRK03606 55 LISIFRAQPRALPLEIRMLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEV 134 (162)
T ss_pred EEEEEeCcccCCCcceeeEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCC
Confidence 4566555422 223345567888899999999998888886542 456889999999999999999754333344
Q ss_pred EEEEEE
Q 027839 163 ASVISA 168 (218)
Q Consensus 163 a~~l~~ 168 (218)
..++.+
T Consensus 135 ~dF~vv 140 (162)
T PRK03606 135 SDFLVV 140 (162)
T ss_pred ceEEEE
Confidence 555444
No 100
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=85.41 E-value=9.2 Score=31.69 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=50.0
Q ss_pred ceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcE-EEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEE
Q 027839 90 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKL-ISKTVKKGEIYVFPKALVHFQKNNGDKPASVIS 167 (218)
Q Consensus 90 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~-~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~ 167 (218)
+.......+++|...-..=.+ ...+++|++|.+.+...+++|+. ....+.+||++-+..+..+.....-.+++.++.
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd~-~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~ 112 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGEP-ADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRL 112 (230)
T ss_pred cceeeeEEECCCCEEECCCCC-CCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEEE
Confidence 345666788888765443333 57899999999999988777753 345568999887665544433222234455444
No 101
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=84.57 E-value=3.4 Score=27.96 Aligned_cols=47 Identities=23% Similarity=0.372 Sum_probs=33.2
Q ss_pred EEcCCccCC-CCCCCCCcEEEEEEEeEEEEEEEecCCcE-EEEEEeCCCEE
Q 027839 97 DYEAGGLNP-PHTHPRATEMIFVLEGELDVGFISTADKL-ISKTVKKGEIY 145 (218)
Q Consensus 97 ~l~pg~~~~-pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~-~~~~L~~Gd~~ 145 (218)
++++|..+- .+-+ ...+++|++|.+.+...+.+++. ....+.+||++
T Consensus 3 ~~~~g~~i~~~g~~--~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYRQGDP--CDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEETTSB--ESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred EECCCCEEEeCCCc--CCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence 455555432 2322 58999999999999998876653 35678888876
No 102
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=84.13 E-value=4.7 Score=33.80 Aligned_cols=93 Identities=18% Similarity=0.169 Sum_probs=60.2
Q ss_pred ccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEecCCCCc--cchh
Q 027839 102 GLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPG--TQSI 179 (218)
Q Consensus 102 ~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~s~~p~--~~~~ 179 (218)
|....|| ++..+.|++|+...... |+......++||..+.|+|......-.. .+-++.--..--|. -+.+
T Consensus 112 GhsGrh~---ad~y~tIL~G~~~~~~~---g~~~~evy~pGd~~~l~rg~a~~y~m~~--~tw~LEY~RG~IP~~lpf~~ 183 (216)
T PF04622_consen 112 GHSGRHW---ADDYFTILSGEQWAWSP---GSLEPEVYKPGDSHHLPRGEAKQYQMPP--GTWALEYGRGWIPSMLPFGF 183 (216)
T ss_pred CCCcceE---eeeEEEEEEEEEEEEcC---CCCCceEeccCCEEEecCceEEEEEeCC--CeEEEEecCCchhhhhHHHH
Confidence 3444554 67899999999877653 3444678999999999999998876653 34444433333343 2334
Q ss_pred chhhhcCCCCCCHHHHHHHcCCCHHH
Q 027839 180 AATLFTATPPVPDNVLTKAFQVGTKE 205 (218)
Q Consensus 180 ~~~lf~~~~~~~~~vl~~af~~~~~~ 205 (218)
++++|+ .++-..+-++..+..++
T Consensus 184 ~dt~~s---TlDf~t~~~T~~~~~~~ 206 (216)
T PF04622_consen 184 ADTLFS---TLDFPTLYRTVYITARE 206 (216)
T ss_pred HHHHHh---ccchHHHHHHHHHHHHH
Confidence 456766 46666666666655444
No 103
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=82.88 E-value=6.2 Score=31.53 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=47.3
Q ss_pred ceEEEEEEEcCCc--cCCCCCCCCCcEEEEEEEeEE-EEEEEecC------CcEEEEEEeCCCEEEECCCCeEEEEeCCC
Q 027839 90 GVSLSRIDYEAGG--LNPPHTHPRATEMIFVLEGEL-DVGFISTA------DKLISKTVKKGEIYVFPKALVHFQKNNGD 160 (218)
Q Consensus 90 gis~~~~~l~pg~--~~~pH~H~~a~E~~~Vl~G~~-~v~~~~~~------~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~ 160 (218)
++++.+..-.+.- ...+-.|+..+|.++-+.|+. .+.++.++ .++..+.+.+|+.+.+-+|.+|...-.-+
T Consensus 56 ~~si~~~~~~~~p~~v~~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~ 135 (165)
T PF04115_consen 56 GISIFRAQPRELPFEVSMLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLD 135 (165)
T ss_dssp EEEEEEEEBE-SSEEEEEEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESS
T ss_pred EEEEEEeeccCCccccceeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccC
Confidence 4556555333222 234557777899999999988 55555443 25678899999999999999998654444
Q ss_pred CCEEEEEEecC
Q 027839 161 KPASVISAFNS 171 (218)
Q Consensus 161 ~~a~~l~~~~s 171 (218)
++..++.+-..
T Consensus 136 ~~~~f~vv~~~ 146 (165)
T PF04115_consen 136 EPADFLVVDRI 146 (165)
T ss_dssp SEEEEEEEEEE
T ss_pred CcceEEEEeCC
Confidence 66777766433
No 104
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=82.20 E-value=9.3 Score=33.82 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=40.3
Q ss_pred ceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEE
Q 027839 90 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQ 155 (218)
Q Consensus 90 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~ 155 (218)
.+++.+.++.. ....-.+ +...+++|++|++++...+ + ...|++|+.+++|+...-+.
T Consensus 241 ~F~l~~~~i~~--~~~~~~~-~~~~il~v~eG~~~l~~~~---~--~~~l~~G~s~~ipa~~~~~~ 298 (312)
T COG1482 241 DFALYKWDISG--TAEFIKQ-ESFSILLVLEGEGTLIGGG---Q--TLKLKKGESFFIPANDGPYT 298 (312)
T ss_pred ceEEEEEeccC--hhhhccC-CCcEEEEEEcCeEEEecCC---E--EEEEcCCcEEEEEcCCCcEE
Confidence 45666666554 1111112 2689999999999987653 3 78999999999999854443
No 105
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=82.08 E-value=14 Score=29.63 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=37.9
Q ss_pred EEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCc-EEEEEEeCCCEEEE
Q 027839 94 SRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADK-LISKTVKKGEIYVF 147 (218)
Q Consensus 94 ~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~-~~~~~L~~Gd~~~i 147 (218)
....+++|...-..=.+ ...+++|++|.+++...+.+|+ .....+.+||++-.
T Consensus 21 ~~~~~~kg~~l~~~g~~-~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 21 HIHKYPAKSTLIHAGEK-AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 74 (211)
T ss_pred eEEEeCCCCEEEeCCCC-CCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEee
Confidence 45577888765433333 5789999999999988776664 34467899998743
No 106
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=80.73 E-value=7.9 Score=30.95 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=36.3
Q ss_pred EEEEcCCccCCCCCCC-CCcEEEEEEEeEEEEEEEecCCcE-EEEEEeCCCEEEEC
Q 027839 95 RIDYEAGGLNPPHTHP-RATEMIFVLEGELDVGFISTADKL-ISKTVKKGEIYVFP 148 (218)
Q Consensus 95 ~~~l~pg~~~~pH~H~-~a~E~~~Vl~G~~~v~~~~~~~~~-~~~~L~~Gd~~~iP 148 (218)
...+++|...-..=-+ ....+++|++|.+++...+++|+. ....+.+||++-.+
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEE 63 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechH
Confidence 3456666554322221 247899999999999998887764 34556999987543
No 107
>PHA00672 hypothetical protein
Probab=78.54 E-value=17 Score=27.98 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=54.6
Q ss_pred ceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEE
Q 027839 90 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVI 166 (218)
Q Consensus 90 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l 166 (218)
|+....++++.|....--.|. .+-+++.+|++++...++ ..+|+.-.++.-|+|.-...+.-.+.....+
T Consensus 46 GvYARei~IPkGt~LtG~~hk--f~~~ii~sG~itV~tdge-----~~rl~g~~~i~~~aG~KragyAHeDT~wt~~ 115 (152)
T PHA00672 46 GVYARTIRIPAGVALTGALIK--VSTVLIFSGHATVFIGGE-----AVELRGYHVIPASAGRKQAFVAHADTDLTML 115 (152)
T ss_pred ceeEEEEeccCceeeeeeeeE--eeEEEEecccEEEEeCCc-----EEEEecceeeecCCCcccceeeeccceEEEE
Confidence 778888999999887766774 455699999999987653 7789999999999999888777655544443
No 108
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=78.50 E-value=28 Score=29.96 Aligned_cols=98 Identities=14% Similarity=0.132 Sum_probs=49.9
Q ss_pred cEEEEeccCCCCCCCccceEEEEEEEcCCc--cCCCCCCCCC--------cEEEEEE-E---eEEEEEEEecCC-cEEEE
Q 027839 73 SLVTAANVEKIPGLNTLGVSLSRIDYEAGG--LNPPHTHPRA--------TEMIFVL-E---GELDVGFISTAD-KLISK 137 (218)
Q Consensus 73 ~~~~~~~~~~~P~l~~~gis~~~~~l~pg~--~~~pH~H~~a--------~E~~~Vl-~---G~~~v~~~~~~~-~~~~~ 137 (218)
..+......+.+. .-.+-+..+.-++|. ..|||.|++. +|+.|-. . |-+.-.+...+. .-...
T Consensus 135 R~V~~~i~~~~~~--~~~Lv~get~~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~~ 212 (261)
T PF04962_consen 135 RTVRNIIDPNVPP--ASRLVVGETITPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEHY 212 (261)
T ss_dssp EEEEEEESTTT-----SS-EEEEEEETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEEE
T ss_pred EEEEEeeCCCCcc--cceEEEEEEEeCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEEE
Confidence 4455555555552 224556655544443 3589999852 5655542 2 333222222111 12367
Q ss_pred EEeCCCEEEECCCCeEEEEeCCCCCEEEEEEecCCC
Q 027839 138 TVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQL 173 (218)
Q Consensus 138 ~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~s~~ 173 (218)
.++-||++.+|+|. |-+.........++.++...+
T Consensus 213 ~V~~~d~V~iP~gy-Hp~~aapGy~~Yylw~maG~~ 247 (261)
T PF04962_consen 213 VVRNGDAVLIPSGY-HPVVAAPGYDMYYLWVMAGEN 247 (261)
T ss_dssp EEETTEEEEESTTB--SEEEEEESSEEEEEEEESSS
T ss_pred EEECCCEEEeCCCC-CCcCcCCCcCcEEEEEEEcCC
Confidence 89999999999993 333222223456777777666
No 109
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=75.74 E-value=19 Score=31.28 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=36.9
Q ss_pred CcE-EEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEe--CCCCCEEEEEE
Q 027839 112 ATE-MIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKN--NGDKPASVISA 168 (218)
Q Consensus 112 a~E-~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N--~g~~~a~~l~~ 168 (218)
..| .++.+.|++++.+.+ + ++.|.+.|++++|+|..-.... ....++++...
T Consensus 73 rrE~giV~lgG~~~V~vdG---~--~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~ 127 (276)
T PRK00924 73 RRELGIINIGGAGTVTVDG---E--TYELGHRDALYVGKGAKEVVFASADAANPAKFYLN 127 (276)
T ss_pred CcEEEEEEccceEEEEECC---E--EEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEE
Confidence 356 566778999998755 3 6779999999999997755543 22456666654
No 110
>PHA02984 hypothetical protein; Provisional
Probab=74.30 E-value=22 Score=30.81 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=39.6
Q ss_pred EEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEE
Q 027839 115 MIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVIS 167 (218)
Q Consensus 115 ~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~ 167 (218)
++.+++|+..+.+.. +++..+..+++||.+.+.-+.-|.... .+..++++.
T Consensus 96 FvlCl~G~~~I~~~~-~~~~is~~I~kGeaf~md~~t~h~i~T-~~knl~L~V 146 (286)
T PHA02984 96 FVLCLNGKTSIECFN-KGSKITNTIKKGEAFTLNLKTKYVTTT-KDKNLHLAV 146 (286)
T ss_pred EEEEcCCeEEEEEec-CCceeeeEEecCceEEEEccceEEEEe-CCCceEEEE
Confidence 445678999998876 456678999999999999999999864 445565554
No 111
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.92 E-value=16 Score=26.04 Aligned_cols=43 Identities=21% Similarity=0.179 Sum_probs=34.6
Q ss_pred CCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEE
Q 027839 111 RATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQK 156 (218)
Q Consensus 111 ~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~ 156 (218)
.+.|...|+.|.+++-+.+. ...++..+|+.+.+|.+.-..++
T Consensus 40 a~~E~Mtvv~Gal~v~lpgs---~dWq~~~~Ge~F~VpgnS~F~lq 82 (94)
T COG3123 40 AAPEEMTVVSGALTVLLPGS---DDWQVYTAGEVFNVPGNSEFDLQ 82 (94)
T ss_pred CCceEEEEEeeEEEEEcCCC---cccEEecCCceEEcCCCCeEEEE
Confidence 36899999999999987653 23788999999999998765554
No 112
>PLN02868 acyl-CoA thioesterase family protein
Probab=72.74 E-value=14 Score=33.68 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=38.9
Q ss_pred EEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEE
Q 027839 94 SRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVF 147 (218)
Q Consensus 94 ~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~i 147 (218)
....+++|..+-.-=.+ ...+++|++|++++...+.+++.....+++||++-.
T Consensus 32 ~~~~~~~Ge~I~~~Gd~-~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVREGEP-GDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeCCCc-CceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 34567777765433233 578999999999998877666666678899998863
No 113
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=72.73 E-value=20 Score=29.00 Aligned_cols=68 Identities=10% Similarity=0.058 Sum_probs=49.3
Q ss_pred cCCCCCCCCCcEEEEEEEe-EEEEEEEecCC-----cEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEec
Q 027839 103 LNPPHTHPRATEMIFVLEG-ELDVGFISTAD-----KLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFN 170 (218)
Q Consensus 103 ~~~pH~H~~a~E~~~Vl~G-~~~v~~~~~~~-----~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~ 170 (218)
+..+-.|+..++.++-+.| ...+.++.+++ ....+....|+.+.+-+|.+|...-.=+.+..++++-.
T Consensus 70 i~~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vvdr 143 (171)
T PRK13395 70 ITMMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVVDR 143 (171)
T ss_pred eeeEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEEeC
Confidence 3445678888999998999 77676665432 45688999999999999999987544444555665543
No 114
>PHA02890 hypothetical protein; Provisional
Probab=72.10 E-value=22 Score=30.55 Aligned_cols=49 Identities=14% Similarity=0.280 Sum_probs=38.2
Q ss_pred EEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEE
Q 027839 115 MIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVIS 167 (218)
Q Consensus 115 ~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~ 167 (218)
++.+++|+..+.+.. +++..+..+++||.+.+.-+.-|.... ..+.++.
T Consensus 95 FVlCL~Gs~~In~~~-~d~~iS~~I~kGeaF~mdv~t~H~i~T---Knl~L~V 143 (278)
T PHA02890 95 FVACIEGSCKINVNI-GDREISDHIHENQGFIMDVGLDHAIDS---DNVGLFI 143 (278)
T ss_pred EEEEeCCeEEEEEec-CCceeeeeeecCceEEEEccceEEEEc---cceeEEE
Confidence 445678999998765 456678999999999999999999865 4455444
No 115
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=71.85 E-value=14 Score=31.74 Aligned_cols=69 Identities=14% Similarity=0.070 Sum_probs=43.5
Q ss_pred EEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCC--------CEEEECCCCeEEEEeCCCCCE
Q 027839 92 SLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKG--------EIYVFPKALVHFQKNNGDKPA 163 (218)
Q Consensus 92 s~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~G--------d~~~iP~g~~H~~~N~g~~~a 163 (218)
.+..++|++|.....-.. +.+-.++.++|++++.+.+. + ...+..- |++++|+|..-.+...++ +
T Consensus 28 ~~~~l~L~~g~~~~~~~~-~~E~~vv~l~G~~~v~~~g~--~--~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~--a 100 (261)
T PF04962_consen 28 GFGVLRLEAGESLEFELE-RRELGVVNLGGKATVTVDGE--E--FYELGGRESVFDGPPDALYVPRGTKVVIFASTD--A 100 (261)
T ss_dssp ECCCEEEECCHCCCCCCC-SEEEEEEEESSSEEEEETTE--E--EEEE-TTSSGGGS--EEEEE-TT--EEEEESST--E
T ss_pred ceEEEEecCCCEEeccCC-CcEEEEEEeCCEEEEEeCCc--e--EEEecccccccCCCCcEEEeCCCCeEEEEEcCC--C
Confidence 445578888876655433 33445667889999987431 2 5677776 999999999988877544 5
Q ss_pred EEEE
Q 027839 164 SVIS 167 (218)
Q Consensus 164 ~~l~ 167 (218)
++..
T Consensus 101 e~~~ 104 (261)
T PF04962_consen 101 EFAV 104 (261)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
No 116
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=70.25 E-value=28 Score=23.97 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=36.1
Q ss_pred EEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCC-cEEEEEEeCCCEEEEC
Q 027839 94 SRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTAD-KLISKTVKKGEIYVFP 148 (218)
Q Consensus 94 ~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~-~~~~~~L~~Gd~~~iP 148 (218)
....+++|...-. -......+.+|++|.+.+...+.+| ......+.+||.+-..
T Consensus 18 ~~~~~~~g~~l~~-~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 18 EPVRYPAGEVIIR-QGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred eEEEeCCCCEEEe-CCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 3456777765532 2333588999999999998775444 3345677889877443
No 117
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=68.98 E-value=21 Score=24.58 Aligned_cols=53 Identities=19% Similarity=0.309 Sum_probs=35.3
Q ss_pred EEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCc-EEEEEEeCCCEEEE
Q 027839 94 SRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADK-LISKTVKKGEIYVF 147 (218)
Q Consensus 94 ~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~-~~~~~L~~Gd~~~i 147 (218)
....+++|...-..-.+ ...+.++++|.+.+...+++|+ .....+.+|+.+-.
T Consensus 18 ~~~~~~~g~~l~~~~~~-~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 18 EERRFPAGEVIIRQGDP-ADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGE 71 (115)
T ss_pred eeeeeCCCCEEEcCCCC-CCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcCh
Confidence 33456777655332222 4789999999999988776553 34566788887633
No 118
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=68.79 E-value=52 Score=25.73 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=40.2
Q ss_pred CCCCCCCCcEEEEEEEeEEEEEEEecCC------------------cEEEEEEeCCCEEEECCCCeEEEE
Q 027839 105 PPHTHPRATEMIFVLEGELDVGFISTAD------------------KLISKTVKKGEIYVFPKALVHFQK 156 (218)
Q Consensus 105 ~pH~H~~a~E~~~Vl~G~~~v~~~~~~~------------------~~~~~~L~~Gd~~~iP~g~~H~~~ 156 (218)
.+-.|.+--.+-|+++|+-.+++..... ......|++|+.+++-++.+|...
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 5567777899999999998888764321 112578899999999999999875
No 119
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=67.24 E-value=3.1 Score=36.38 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=18.6
Q ss_pred EEEEEeCCCEEEECCCCeEEE
Q 027839 135 ISKTVKKGEIYVFPKALVHFQ 155 (218)
Q Consensus 135 ~~~~L~~Gd~~~iP~g~~H~~ 155 (218)
....+++||++++|+|.+|..
T Consensus 151 n~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 151 NRIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred cccccCCCCEEEeCCCCcccc
Confidence 357899999999999999983
No 120
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=66.50 E-value=8.4 Score=34.24 Aligned_cols=41 Identities=20% Similarity=0.037 Sum_probs=29.0
Q ss_pred EEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEecCCCCc
Q 027839 135 ISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPG 175 (218)
Q Consensus 135 ~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~s~~p~ 175 (218)
..-...+|+++++|.|..|...|....-|+--...+.+|..
T Consensus 263 IEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 263 IECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred ceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 45678999999999999999999855544433333444443
No 121
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=66.15 E-value=96 Score=27.51 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=46.5
Q ss_pred CCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCEEEEEEecC--CCCccchh
Q 027839 106 PHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNS--QLPGTQSI 179 (218)
Q Consensus 106 pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a~~l~~~~s--~~p~~~~~ 179 (218)
.-+..+++-+++--+|.+.+. .+-|| ..+.++++.+||+|.-..+.-.|..+-.++.++.. +.|....+
T Consensus 149 afyNsDGDFLiVPQ~G~L~I~--TEfGr---llV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg~HF~LPDLGPI 219 (446)
T KOG1417|consen 149 AFYNSDGDFLIVPQQGRLWIT--TEFGR---LLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYGAHFQLPDLGPI 219 (446)
T ss_pred eeecCCCCEEEecccCcEEEE--eeccc---eeecccceEEeecccEEEEecCCCCcceEEEEecceeecCCCCcc
Confidence 344554444455555766554 44455 46899999999999998887778888888888764 23444444
No 122
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=64.19 E-value=24 Score=29.05 Aligned_cols=51 Identities=6% Similarity=0.004 Sum_probs=36.1
Q ss_pred EEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcE-EEEEEeCCCEEEE
Q 027839 96 IDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKL-ISKTVKKGEIYVF 147 (218)
Q Consensus 96 ~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~-~~~~L~~Gd~~~i 147 (218)
..+++|...-..=-+ ...+.+|++|.+++...+.+|+. ....+.+||++-.
T Consensus 34 ~~~~kge~l~~~G~~-~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~ 85 (226)
T PRK10402 34 FHFLAREYIVQEGQQ-PSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGE 85 (226)
T ss_pred eeeCCCCEEEcCCCC-CceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEe
Confidence 466777655332222 57899999999999988877753 3456789998754
No 123
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=64.09 E-value=7.3 Score=35.51 Aligned_cols=23 Identities=17% Similarity=0.067 Sum_probs=20.2
Q ss_pred EEEEEEeCCCEEEECCCCeEEEE
Q 027839 134 LISKTVKKGEIYVFPKALVHFQK 156 (218)
Q Consensus 134 ~~~~~L~~Gd~~~iP~g~~H~~~ 156 (218)
+....|++||++++|+|.+|...
T Consensus 236 LN~v~l~pGeaifipAg~~HAyl 258 (389)
T PRK15131 236 LNVVKLNPGEAMFLFAETPHAYL 258 (389)
T ss_pred eeEEEeCCCCEEEeCCCCCeEEc
Confidence 34678999999999999999974
No 124
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=63.52 E-value=6.2 Score=34.94 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.7
Q ss_pred EEEEEeCCCEEEECCCCeEEEE
Q 027839 135 ISKTVKKGEIYVFPKALVHFQK 156 (218)
Q Consensus 135 ~~~~L~~Gd~~~iP~g~~H~~~ 156 (218)
....|+|||.+++|+|.+|...
T Consensus 158 n~v~lkpGe~~fl~Agt~HA~~ 179 (312)
T COG1482 158 NRVKLKPGEAFFLPAGTPHAYL 179 (312)
T ss_pred cEEecCCCCEEEecCCCceeec
Confidence 3578999999999999999984
No 125
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=63.08 E-value=25 Score=30.72 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=37.2
Q ss_pred cEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCC
Q 027839 113 TEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKP 162 (218)
Q Consensus 113 ~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~ 162 (218)
.-++++.+|.+.+...+ +. ...+.++..+++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~~~--g~--~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITTSS--GE--YITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEeCC--Cc--eEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 56889999999886543 23 579999999999999999999976444
No 126
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.21 E-value=4.7 Score=33.73 Aligned_cols=84 Identities=18% Similarity=0.216 Sum_probs=54.7
Q ss_pred CccceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEec---C-----Cc---EEEEEEeC--------CCEEEE
Q 027839 87 NTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIST---A-----DK---LISKTVKK--------GEIYVF 147 (218)
Q Consensus 87 ~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~---~-----~~---~~~~~L~~--------Gd~~~i 147 (218)
++-++|+..+.+++++++|.|-||.=.-+.-++=|++.+-..+- + .. +....|+. +-.+..
T Consensus 71 EcD~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyDw~ePd~~~~~dp~q~~r~akl~~d~~~T~~s~~~~Ly 150 (236)
T KOG4281|consen 71 ECDRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYDWVEPDEPQTEDPHQPVRPAKLVSDKEFTAASPASTLY 150 (236)
T ss_pred ecCceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeeccccCCCCcccCCCCcceeeeeEeccceecCCCCCcEee
Confidence 34578999999999999999999987777778889998865531 1 11 11222222 223333
Q ss_pred CC--CCeEEEEeCCCCCEEEEEEecCC
Q 027839 148 PK--ALVHFQKNNGDKPASVISAFNSQ 172 (218)
Q Consensus 148 P~--g~~H~~~N~g~~~a~~l~~~~s~ 172 (218)
|+ |..|.+...+ .|.++-+++..
T Consensus 151 P~~ggn~h~f~a~t--~cAvlDILsPP 175 (236)
T KOG4281|consen 151 PKTGGNHHCFTAIT--PCAVLDILSPP 175 (236)
T ss_pred ecCCCcEeeeeecc--ceeEEeeccCC
Confidence 33 6677776543 77777776643
No 127
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=61.19 E-value=37 Score=26.49 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=40.1
Q ss_pred cEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEe---CCCCCEEEEEE
Q 027839 113 TEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKN---NGDKPASVISA 168 (218)
Q Consensus 113 ~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N---~g~~~a~~l~~ 168 (218)
.-+.+|++|+=++.+.++ .+...+|++++.+.+.+-...- ..++|...+.+
T Consensus 24 p~i~~vlQG~K~~~~g~~-----~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l 77 (155)
T PF06719_consen 24 PSICIVLQGSKRVHLGDQ-----VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSL 77 (155)
T ss_pred CeEEEEEeeeEEEEECCc-----eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEE
Confidence 568999999999988764 7899999999999998776543 34566666654
No 128
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=59.44 E-value=90 Score=26.70 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=54.2
Q ss_pred EEEeccCCCCCCCccceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecC----C-cEEEEEEeCCCEEEECC
Q 027839 75 VTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTA----D-KLISKTVKKGEIYVFPK 149 (218)
Q Consensus 75 ~~~~~~~~~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~----~-~~~~~~L~~Gd~~~iP~ 149 (218)
+..++ .+-+++.-. .+...++.+|.....-.-.+ +-++++++|++++...+.. | |.-.+.=++=|++++|.
T Consensus 16 v~~vt-p~sagw~YV--GF~~~~L~~Ges~~~~~~~~-E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~ 91 (270)
T COG3718 16 VQDVT-PESAGWEYV--GFRLLRLAAGESATEETGDR-ERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPA 91 (270)
T ss_pred eEEec-CCCCCceeE--EEEEEEccCCCcccccCCCc-eEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecC
Confidence 34443 344555533 44556788998777666653 6677889999998765432 2 32223445679999999
Q ss_pred CCeEEEEeCCCC
Q 027839 150 ALVHFQKNNGDK 161 (218)
Q Consensus 150 g~~H~~~N~g~~ 161 (218)
|........++-
T Consensus 92 g~~~~vtA~t~~ 103 (270)
T COG3718 92 GSAFSVTATTDL 103 (270)
T ss_pred CceEEEEeecce
Confidence 999888776543
No 129
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=57.15 E-value=62 Score=24.92 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=23.0
Q ss_pred cCCccCCCCCCCCCcEEEEEEEeEEEEEEE
Q 027839 99 EAGGLNPPHTHPRATEMIFVLEGELDVGFI 128 (218)
Q Consensus 99 ~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~ 128 (218)
.|-....+-.|.+...+-|+++|+=++++.
T Consensus 56 ~~~~~~~~E~Hr~YiDIq~~l~G~E~i~~~ 85 (142)
T TIGR00022 56 AEPVSKKAELHHRYLDIQLLLRGEENIEVG 85 (142)
T ss_pred CChhhcchhhhhheEEEEEeecceEEEEEe
Confidence 333445566777789999999999999885
No 130
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=56.88 E-value=47 Score=25.97 Aligned_cols=56 Identities=13% Similarity=0.102 Sum_probs=38.6
Q ss_pred EEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcE-EEEEEeCCCEEEECC
Q 027839 93 LSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKL-ISKTVKKGEIYVFPK 149 (218)
Q Consensus 93 ~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~-~~~~L~~Gd~~~iP~ 149 (218)
.....+++|...-..--+ +.-+.+|++|.+.+....++|+. ....+.+||.+-...
T Consensus 23 ~~~~~~~~g~~l~~~g~~-~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 23 LEVRKLPKGEVLFTEGEE-ADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELA 79 (214)
T ss_pred ceeEeeCCCCEEEcCCCc-CceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHH
Confidence 344566676544433333 45689999999999999877753 345688999886664
No 131
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=56.21 E-value=66 Score=25.51 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=44.8
Q ss_pred CCccCCCCCCCCCcEEEEEEEeEEEEEEEecCC--------------------cEEEEEEeCCCEEEECCCCeEEEEeCC
Q 027839 100 AGGLNPPHTHPRATEMIFVLEGELDVGFISTAD--------------------KLISKTVKKGEIYVFPKALVHFQKNNG 159 (218)
Q Consensus 100 pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~--------------------~~~~~~L~~Gd~~~iP~g~~H~~~N~g 159 (218)
+.....+-.|.+.-.+-++++|+=.+.+....+ .....+|.+|+.++|=+|.+|......
T Consensus 57 ~~~~~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~~ 136 (154)
T COG2731 57 EAEEKKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCNV 136 (154)
T ss_pred chhhcchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCcccccccc
Confidence 334445666777899999999998888765321 123678999999999999999875443
Q ss_pred C
Q 027839 160 D 160 (218)
Q Consensus 160 ~ 160 (218)
.
T Consensus 137 ~ 137 (154)
T COG2731 137 G 137 (154)
T ss_pred C
Confidence 3
No 132
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=54.57 E-value=16 Score=28.39 Aligned_cols=25 Identities=0% Similarity=0.074 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHhh
Q 027839 188 PPVPDNVLTKAFQVGTKEIEKIKSK 212 (218)
Q Consensus 188 ~~~~~~vl~~af~~~~~~v~~l~~~ 212 (218)
+.++++.++++|++++|.+++|++.
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~ 112 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKS 112 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcC
Confidence 4789999999999999999999864
No 133
>PF13994 PgaD: PgaD-like protein
Probab=53.81 E-value=18 Score=27.94 Aligned_cols=24 Identities=21% Similarity=0.639 Sum_probs=21.9
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhh
Q 027839 189 PVPDNVLTKAFQVGTKEIEKIKSK 212 (218)
Q Consensus 189 ~~~~~vl~~af~~~~~~v~~l~~~ 212 (218)
.++++.+|+.|++++++++++++.
T Consensus 100 ~~~~~elA~~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 100 PVSDEELARSFGLSPEQLQQLRQA 123 (138)
T ss_pred CCCHHHHHHHcCCCHHHHHHHHhC
Confidence 489999999999999999999874
No 134
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=53.34 E-value=58 Score=26.59 Aligned_cols=51 Identities=12% Similarity=0.078 Sum_probs=34.6
Q ss_pred EEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcE-EEEEEeCCCEEEE
Q 027839 96 IDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKL-ISKTVKKGEIYVF 147 (218)
Q Consensus 96 ~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~-~~~~L~~Gd~~~i 147 (218)
..+++|...-.-=- ....+.+|++|.+.+...+++|+. ....+.+||++-.
T Consensus 40 ~~~~kge~l~~~Gd-~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 40 KPIQKGQTLFKAGD-ELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred eeecCCCEeECCCC-CcceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 35666665433222 257799999999999988877754 3344589998854
No 135
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=52.78 E-value=19 Score=28.56 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHhh
Q 027839 188 PPVPDNVLTKAFQVGTKEIEKIKSK 212 (218)
Q Consensus 188 ~~~~~~vl~~af~~~~~~v~~l~~~ 212 (218)
+.++++.+++.|+++++.++++++.
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHhC
Confidence 4789999999999999999999874
No 136
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=52.44 E-value=34 Score=26.84 Aligned_cols=36 Identities=8% Similarity=0.261 Sum_probs=28.1
Q ss_pred CcEEEEEEEeEEEEEEEecCCcE-EEEEEeCCCEEEE
Q 027839 112 ATEMIFVLEGELDVGFISTADKL-ISKTVKKGEIYVF 147 (218)
Q Consensus 112 a~E~~~Vl~G~~~v~~~~~~~~~-~~~~L~~Gd~~~i 147 (218)
...+++|++|.+.+...+++|+. ....+.+||++-.
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~ 47 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGV 47 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeee
Confidence 46789999999999988877754 3467899997743
No 137
>COG1741 Pirin-related protein [General function prediction only]
Probab=51.35 E-value=1.7e+02 Score=25.53 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=29.0
Q ss_pred CCCCCccceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEE
Q 027839 83 IPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDV 125 (218)
Q Consensus 83 ~P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v 125 (218)
.|.-+.. +.+..+.+.+|.....+ -..-.-++||++|++.+
T Consensus 166 ~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v 206 (276)
T COG1741 166 SPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEV 206 (276)
T ss_pred cccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEE
Confidence 3444444 67788888999877766 22236689999998877
No 138
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=50.98 E-value=43 Score=27.48 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=35.0
Q ss_pred EEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEE
Q 027839 95 RIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYV 146 (218)
Q Consensus 95 ~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~ 146 (218)
...+++|...-. -......+++|++|.+.+.....+++.....+.+||++-
T Consensus 32 ~~~~~~ge~l~~-~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g 82 (236)
T PRK09392 32 LQRFPPGTMLIT-EGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFI 82 (236)
T ss_pred eeecCCCCEEEe-CCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhh
Confidence 456777765432 233368899999999999876544454556778899764
No 139
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=49.97 E-value=21 Score=32.43 Aligned_cols=60 Identities=23% Similarity=0.258 Sum_probs=44.0
Q ss_pred CCccCCCC---CCCCCcEEEEEEEeEEEEEEEecCC-------------------------cEEEEEEeCCCEEEECCCC
Q 027839 100 AGGLNPPH---THPRATEMIFVLEGELDVGFISTAD-------------------------KLISKTVKKGEIYVFPKAL 151 (218)
Q Consensus 100 pg~~~~pH---~H~~a~E~~~Vl~G~~~v~~~~~~~-------------------------~~~~~~L~~Gd~~~iP~g~ 151 (218)
.|+..+.| +|. .-+...+.|.=+.-+..+.. +.....-++|+++++|.|.
T Consensus 207 ~gSwtp~HaDVf~s--~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VFvPsGW 284 (427)
T KOG2131|consen 207 AGSWTPFHADVFHS--PSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVFVPSGW 284 (427)
T ss_pred CCCCCccchhhhcC--CcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceeeccCcc
Confidence 45667888 773 66778888887776665431 1123445899999999999
Q ss_pred eEEEEeCCCC
Q 027839 152 VHFQKNNGDK 161 (218)
Q Consensus 152 ~H~~~N~g~~ 161 (218)
-|...|.+++
T Consensus 285 ~hQV~NL~dT 294 (427)
T KOG2131|consen 285 HHQVLNLGDT 294 (427)
T ss_pred ccccccccce
Confidence 9999999875
No 140
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=49.10 E-value=48 Score=23.18 Aligned_cols=62 Identities=23% Similarity=0.358 Sum_probs=35.5
Q ss_pred EEcCCccCCCCCCC---CCcEEEEE--EE-e-----EEEEEEEec---CCcEEEEE-----EeCCCEEEECC-CCeEEEE
Q 027839 97 DYEAGGLNPPHTHP---RATEMIFV--LE-G-----ELDVGFIST---ADKLISKT-----VKKGEIYVFPK-ALVHFQK 156 (218)
Q Consensus 97 ~l~pg~~~~pH~H~---~a~E~~~V--l~-G-----~~~v~~~~~---~~~~~~~~-----L~~Gd~~~iP~-g~~H~~~ 156 (218)
...+|+...||+.. ....+.++ +. - -+...+... ++...... .++|++++|+. ...|...
T Consensus 5 ~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v~ 84 (100)
T PF13640_consen 5 RYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGVT 84 (100)
T ss_dssp EEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEEE
T ss_pred EECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecCc
Confidence 45788888888865 33333333 23 1 123333321 12212233 88999999999 9999987
Q ss_pred eC
Q 027839 157 NN 158 (218)
Q Consensus 157 N~ 158 (218)
-.
T Consensus 85 ~v 86 (100)
T PF13640_consen 85 PV 86 (100)
T ss_dssp EE
T ss_pred cc
Confidence 65
No 141
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=48.36 E-value=1.3e+02 Score=23.35 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=34.8
Q ss_pred CCccCCCCCCCCCcEEEEEEEeEEEEEEEe-cC-------------------C-cEEEEEEeCCCEEEECCCCeEEEE
Q 027839 100 AGGLNPPHTHPRATEMIFVLEGELDVGFIS-TA-------------------D-KLISKTVKKGEIYVFPKALVHFQK 156 (218)
Q Consensus 100 pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~-~~-------------------~-~~~~~~L~~Gd~~~iP~g~~H~~~ 156 (218)
+-....+-.|.+.-.+-|+++|+-++++.. .. + ......|++|+.++|-++-+|.-.
T Consensus 57 ~~~~~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~ 134 (153)
T PF04074_consen 57 PEEERRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPG 134 (153)
T ss_dssp -GGGS-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEE
T ss_pred cccccceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCcccccc
Confidence 333455677888899999999999998832 11 0 112467999999999999999853
No 142
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=47.28 E-value=21 Score=27.12 Aligned_cols=26 Identities=12% Similarity=0.367 Sum_probs=20.9
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhhcC
Q 027839 189 PVPDNVLTKAFQVGTKEIEKIKSKLA 214 (218)
Q Consensus 189 ~~~~~vl~~af~~~~~~v~~l~~~~~ 214 (218)
|+++..+++..++++++|+++|+..+
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~~~ 97 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKEHG 97 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHHHT
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHcC
Confidence 79999999999999999999998744
No 143
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=46.08 E-value=49 Score=21.50 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=20.9
Q ss_pred EEEEEecCCcEEEEEEeCCCEEEECCCCeEE
Q 027839 124 DVGFISTADKLISKTVKKGEIYVFPKALVHF 154 (218)
Q Consensus 124 ~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~ 154 (218)
++++-++.++.++..|.+|..+.--+|.++.
T Consensus 11 rVQlTD~Kgr~~Ti~L~~G~~fhThrG~i~H 41 (54)
T PF14801_consen 11 RVQLTDPKGRKHTITLEPGGEFHTHRGAIRH 41 (54)
T ss_dssp EEEEEETT--EEEEE--TT-EEEETTEEEEH
T ss_pred EEEEccCCCCeeeEEECCCCeEEcCccccch
Confidence 4677888888899999999999888877653
No 144
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=44.56 E-value=22 Score=23.53 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=17.2
Q ss_pred CHHHHHHHcCCCHHHHHHHHhhc
Q 027839 191 PDNVLTKAFQVGTKEIEKIKSKL 213 (218)
Q Consensus 191 ~~~vl~~af~~~~~~v~~l~~~~ 213 (218)
.+.-|.+.+|++++++++||+++
T Consensus 45 ~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 45 VENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp HHHHHHHT-T--HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHc
Confidence 56788889999999999999875
No 145
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=42.67 E-value=1e+02 Score=23.77 Aligned_cols=65 Identities=15% Similarity=0.284 Sum_probs=43.4
Q ss_pred CCCCccceEEEEEEEcCCccCCCCCCCCCcEEEEEE----EeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEe
Q 027839 84 PGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVL----EGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKN 157 (218)
Q Consensus 84 P~l~~~gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl----~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N 157 (218)
|+++ .+.+.++.+++|.....- +..|+...+ .|.+.+++-++.+ ..+++||++-+-.|..-.+++
T Consensus 12 P~~k--N~~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~~----~~~~PGDIirLt~Gy~Si~qg 80 (134)
T KOG3416|consen 12 PGLK--NINVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEEG----CLIQPGDIIRLTGGYASIFQG 80 (134)
T ss_pred hhhh--cceEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCcC----cccCCccEEEecccchhhhcC
Confidence 5555 557778888887655432 234555544 3667776666433 478999999999988776654
No 146
>PLN02288 mannose-6-phosphate isomerase
Probab=41.45 E-value=20 Score=32.79 Aligned_cols=21 Identities=14% Similarity=0.031 Sum_probs=19.2
Q ss_pred EEEEeCCCEEEECCCCeEEEE
Q 027839 136 SKTVKKGEIYVFPKALVHFQK 156 (218)
Q Consensus 136 ~~~L~~Gd~~~iP~g~~H~~~ 156 (218)
...|++||.+++|+|.+|...
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl 272 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYL 272 (394)
T ss_pred eEecCCCCEEEecCCCCceec
Confidence 578999999999999999874
No 147
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=40.95 E-value=1.4e+02 Score=25.57 Aligned_cols=84 Identities=15% Similarity=0.191 Sum_probs=53.4
Q ss_pred ceEEEEEEEcCCcc---CCCCCCCCCcEEEEEE---EeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEeCCCCCE
Q 027839 90 GVSLSRIDYEAGGL---NPPHTHPRATEMIFVL---EGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPA 163 (218)
Q Consensus 90 gis~~~~~l~pg~~---~~pH~H~~a~E~~~Vl---~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N~g~~~a 163 (218)
.+++....++||.+ .|+|.|.|..|..+-. +-.-.+.+-++.++..-..++--+.++-|+=.+|.-. |...-
T Consensus 176 QL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP~ETRHiv~~NEqAViSP~WSIHSG~--GT~~Y 253 (278)
T COG3717 176 QLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQPQETRHIVMHNEQAVISPPWSIHSGV--GTANY 253 (278)
T ss_pred hhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCCCceeEEEEeccceeeCCCceeecCc--cccce
Confidence 35667778999975 5889999877754422 1222233333333333456677788888888888753 55667
Q ss_pred EEEEEecCCCCc
Q 027839 164 SVISAFNSQLPG 175 (218)
Q Consensus 164 ~~l~~~~s~~p~ 175 (218)
.++.....+|-.
T Consensus 254 tFIWaMaGeN~~ 265 (278)
T COG3717 254 TFIWAMAGENQD 265 (278)
T ss_pred EEEEEecccccc
Confidence 777777665543
No 148
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=38.29 E-value=89 Score=28.12 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=51.5
Q ss_pred ceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCc-EEEEEEeCCCE--EEECCCCeEEEEe
Q 027839 90 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADK-LISKTVKKGEI--YVFPKALVHFQKN 157 (218)
Q Consensus 90 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~-~~~~~L~~Gd~--~~iP~g~~H~~~N 157 (218)
-..+.|+.++..-+..-+...+...+-.++|...++.+..++|+ +-...|++||- .+++.+--|+-..
T Consensus 266 ~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG~~vsVt~Lk~GD~VL~~~~~~~RHfG~~ 336 (344)
T PRK02290 266 EAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDGKPVSVVDLKPGDEVLGYLEEAARHFGMA 336 (344)
T ss_pred EEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEEecCCcccccce
Confidence 35678888887777665555467999999999999999998886 34688999994 4566666676543
No 149
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=38.03 E-value=40 Score=20.52 Aligned_cols=26 Identities=8% Similarity=0.038 Sum_probs=19.0
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhhcC
Q 027839 189 PVPDNVLTKAFQVGTKEIEKIKSKLA 214 (218)
Q Consensus 189 ~~~~~vl~~af~~~~~~v~~l~~~~~ 214 (218)
+.+...+++.++++..++.+..++|.
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~ 42 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYR 42 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT---
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcc
Confidence 68899999999999999999998874
No 150
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=36.85 E-value=39 Score=19.44 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=18.7
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhhcC
Q 027839 190 VPDNVLTKAFQVGTKEIEKIKSKLA 214 (218)
Q Consensus 190 ~~~~vl~~af~~~~~~v~~l~~~~~ 214 (218)
++.+-++...|+..+++.++.+++.
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~ 27 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLE 27 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 6778899999999999998877653
No 151
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=36.30 E-value=71 Score=30.17 Aligned_cols=32 Identities=31% Similarity=0.525 Sum_probs=25.8
Q ss_pred CcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEE
Q 027839 112 ATEMIFVLEGELDVGFISTADKLISKTVKKGEIY 145 (218)
Q Consensus 112 a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~ 145 (218)
+.|+++|.+|.+.+ ++.+|...-.+|++|+++
T Consensus 348 gkEMyIVk~G~L~V--v~dDg~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 348 GKEMYIVKEGKLAV--VADDGVTVFVTLKAGSVF 379 (536)
T ss_pred cceEEEEEccEEEE--EecCCcEEEEEecCCcee
Confidence 79999999999876 445665556899999876
No 152
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=35.38 E-value=85 Score=31.34 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=34.0
Q ss_pred EEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEE
Q 027839 93 LSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIY 145 (218)
Q Consensus 93 ~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~ 145 (218)
+....++||..+-..=.. .+++.+|++|++.+......++.....+++||++
T Consensus 397 ~~~~~~~pge~I~~qge~-~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 397 MKAEYIPPREDVIMQNEA-PDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIF 448 (823)
T ss_pred hheeeeCCCCEEEECCCC-CceEEEEEecEEEEEEecCCcceeeEEccCCCEe
Confidence 344567787654332233 5789999999999864332223345678999987
No 153
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=35.03 E-value=43 Score=27.13 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=22.2
Q ss_pred CcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECC
Q 027839 112 ATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPK 149 (218)
Q Consensus 112 a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~ 149 (218)
..-++|+++|++.+.... ....|.+||.+++-.
T Consensus 135 ~~~l~~~~~G~~~i~~~~-----~~~~L~~~d~l~~~~ 167 (184)
T PF05962_consen 135 STVLVYVLEGAWSITEGG-----NCISLSAGDLLLIDD 167 (184)
T ss_dssp SEEEEEESSS-EEECCCE-----EEEEE-TT-EEEEES
T ss_pred CEEEEEEeeCcEEEecCC-----CceEcCCCCEEEEeC
Confidence 467889999987664322 278999999998876
No 154
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=32.57 E-value=82 Score=31.29 Aligned_cols=48 Identities=17% Similarity=0.355 Sum_probs=34.6
Q ss_pred EEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEE
Q 027839 97 DYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIY 145 (218)
Q Consensus 97 ~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~ 145 (218)
.+.||..+-.+=.+ -+|+.+|++|++++.-.+.++......|++||.+
T Consensus 446 ~f~pge~iireGd~-v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 446 YFTPGEYIIREGDP-VTDMYFIVRGSLESITTDGGGFFVVAILGPGDFF 493 (727)
T ss_pred ccCCCCeEEecCCc-cceeEEEEeeeEEEEEccCCceEEEEEecCCCcc
Confidence 45666655555555 5899999999998765553344567899999987
No 155
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=31.37 E-value=62 Score=32.33 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=47.8
Q ss_pred EEEEEEEcCCccCCC-CCCCCCcEEEEEEEeEEEEEEEec----------------CCcEEEEEEeCCCEEEECCCCeEE
Q 027839 92 SLSRIDYEAGGLNPP-HTHPRATEMIFVLEGELDVGFIST----------------ADKLISKTVKKGEIYVFPKALVHF 154 (218)
Q Consensus 92 s~~~~~l~pg~~~~p-H~H~~a~E~~~Vl~G~~~v~~~~~----------------~~~~~~~~L~~Gd~~~iP~g~~H~ 154 (218)
++.-..+.+|+...+ |.+. ...++|.+.++-.-.-..+ -..-+.-.|++|+.++||.|.+|.
T Consensus 137 ~Ytdfhidfggtsvwyhil~-G~K~f~lI~pt~~nl~~ye~w~~s~~q~~~ffGd~VdkC~~~~l~~g~T~~iPsGwIhA 215 (776)
T KOG1633|consen 137 SYTDFHIDFGGTSVWYHILA-GEKTFYLIPPTCENLELYECWESSTPQDEIFFGDCVDKCYKCILKQGQTLFIPSGWIHA 215 (776)
T ss_pred cccccccCCCCcchhhhhhc-cccceeeeCCcccchhhhhhhhhcccccccccCCccceeEEEEeccCceEecccceeEe
Confidence 345556777776554 7775 4777777776533211111 012245788999999999999999
Q ss_pred EEeCCCCCEEEEEEe
Q 027839 155 QKNNGDKPASVISAF 169 (218)
Q Consensus 155 ~~N~g~~~a~~l~~~ 169 (218)
..-+.+.-+....++
T Consensus 216 V~Tp~d~l~fgGnfl 230 (776)
T KOG1633|consen 216 VLTPTDCLVFGGNFL 230 (776)
T ss_pred eecCcchheeccchh
Confidence 986655444333333
No 156
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=31.23 E-value=18 Score=36.06 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=35.4
Q ss_pred CCccCCCCCCCCCcEEEEEEEeEEEEEEEecCC-cEEEEEEeCCCEEEECCCCeEEEEeCCC
Q 027839 100 AGGLNPPHTHPRATEMIFVLEGELDVGFISTAD-KLISKTVKKGEIYVFPKALVHFQKNNGD 160 (218)
Q Consensus 100 pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~-~~~~~~L~~Gd~~~iP~g~~H~~~N~g~ 160 (218)
-|..+++-.||-.++-+|+-++.- ..+-.+-| +-++..-..||.++||+|.+|..+|.-.
T Consensus 764 ~~~~~~~v~hPIhDQS~YLd~~lr-~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkS 824 (889)
T KOG1356|consen 764 QGHEVPKVHHPIHDQSWYLDRYLR-RRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKS 824 (889)
T ss_pred hcCCCCcccCCCcccceeccHHHH-HHHHHHhCCCccchhhcccceEEecCCCcHHhhhhhh
Confidence 334455556666666666554310 00000011 1145666889999999999999999643
No 157
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=30.94 E-value=92 Score=25.40 Aligned_cols=44 Identities=11% Similarity=0.057 Sum_probs=34.7
Q ss_pred cEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEe
Q 027839 113 TEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKN 157 (218)
Q Consensus 113 ~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N 157 (218)
.-+..-++|++.+.+.. .|..+...|.+|+-+++.++.+=.+..
T Consensus 130 g~~~~~l~G~G~v~l~~-~G~i~~i~L~~ge~~~Vd~~~lVA~~~ 173 (215)
T PF01987_consen 130 GLFMLKLSGRGTVFLSG-YGAIYEIDLAPGEEIIVDPGHLVAWSG 173 (215)
T ss_dssp -EEEEEEESSCEEEEEE-CCSEEEEEEE-EEEEEEEGGGEEEEET
T ss_pred CcEEEEEEEEEEEEEEe-CCcEEEEEccCCceEEEcCCCEEEECC
Confidence 34556788999998877 678889999999999999988877754
No 158
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=30.68 E-value=1.4e+02 Score=27.08 Aligned_cols=69 Identities=13% Similarity=0.180 Sum_probs=51.8
Q ss_pred ceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCc-EEEEEEeCCCE--EEECCCCeEEEEeC
Q 027839 90 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADK-LISKTVKKGEI--YVFPKALVHFQKNN 158 (218)
Q Consensus 90 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~-~~~~~L~~Gd~--~~iP~g~~H~~~N~ 158 (218)
-..+.|+.++..-+..-+...+..++..++|...++.+..++|+ +-...|++||- .+++.+--|+-...
T Consensus 276 ~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G~~vsVt~Lk~GD~vL~~~~~~~RHfG~~I 347 (354)
T PF01959_consen 276 TAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDGEPVSVTELKPGDEVLVYLEEAGRHFGMKI 347 (354)
T ss_pred EEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEEecCCCcccceEe
Confidence 35678888887776655544467999999999999999998886 34578999994 46677777765443
No 159
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=30.58 E-value=86 Score=24.99 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=59.6
Q ss_pred eEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEe-cCCc------EEEEEEeCCCEEEECCCC-eEEEEeCC-CC
Q 027839 91 VSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFIS-TADK------LISKTVKKGEIYVFPKAL-VHFQKNNG-DK 161 (218)
Q Consensus 91 is~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~-~~~~------~~~~~L~~Gd~~~iP~g~-~H~~~N~g-~~ 161 (218)
+.+..+...+|.....|-|.++.-++-+++|+++=.... ++.+ .-...+...++.+|.-.+ +|+.+|.+ .+
T Consensus 72 fNLmILCWGeGhgSSvHDHtdsHCF~KmL~G~L~Et~yawPd~ks~e~v~isE~~~~~N~vaYiND~lGLHRvEN~SHs~ 151 (196)
T KOG4064|consen 72 FNLMILCWGEGHGSSVHDHTDSHCFVKMLDGELTETKYAWPDRKSHEPVDISEKTYGMNGVAYINDELGLHRVENLSHSN 151 (196)
T ss_pred EeEEEEEecCCCCccccccccchhHHHHhcCcchhhcccCCCcccCccccccceeeeccceEEecccccceeccccccCC
Confidence 567778899999999999998888889999987643221 1111 113678888999998876 79999986 46
Q ss_pred CEEEEEEecC
Q 027839 162 PASVISAFNS 171 (218)
Q Consensus 162 ~a~~l~~~~s 171 (218)
+++-+..+..
T Consensus 152 ~aVSLHLY~P 161 (196)
T KOG4064|consen 152 GAVSLHLYIP 161 (196)
T ss_pred CceEEEEecC
Confidence 6777766653
No 160
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=25.72 E-value=1e+02 Score=30.04 Aligned_cols=59 Identities=20% Similarity=0.347 Sum_probs=38.1
Q ss_pred ceEEEEEEEcCCccCCCCCCCCCcEEEEEEEeEEEEEEEecCCcEEEEEEeCCCEEEECCCCeEEEEe
Q 027839 90 GVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKN 157 (218)
Q Consensus 90 gis~~~~~l~pg~~~~pH~H~~a~E~~~Vl~G~~~v~~~~~~~~~~~~~L~~Gd~~~iP~g~~H~~~N 157 (218)
.+.+...+-.||.. -.|.-..-+-+.+|++|++++.-.++ ....|.+||++ |-..|-.|
T Consensus 568 Am~f~~~H~APGDL-lYHtGESvDaLcFvVsGSLEVIQDDE----VVAILGKGDVF----GD~FWK~~ 626 (971)
T KOG0501|consen 568 AMEFQTNHCAPGDL-LYHTGESVDALCFVVSGSLEVIQDDE----VVAILGKGDVF----GDEFWKEN 626 (971)
T ss_pred HHHHHhccCCCcce-eeecCCccceEEEEEecceEEeecCc----EEEEeecCccc----hhHHhhhh
Confidence 33344445555543 23444556779999999999865543 46889999997 55445444
No 161
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=25.42 E-value=1e+02 Score=21.69 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=16.3
Q ss_pred ChhhhHHHHHHHHHHHHhhhccCCCCCcc--eeec
Q 027839 1 MAINLFSTYLLIFSIIAGVLAVDPDTLQD--VCVA 33 (218)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~d--~cv~ 33 (218)
|+--+++.+.+.++.+.++.++.|.--.| ||.-
T Consensus 1 MR~~~~aa~a~~~~~~~~~~~~~pA~A~dyp~Clq 35 (82)
T PF12071_consen 1 MRRLLLAALALLLAAALLALAAAPAQARDYPYCLQ 35 (82)
T ss_pred ChhHHHHHHHHHHHHHHHhccccchhhcCCcEEEe
Confidence 55444544443222222334555655667 7884
No 162
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=24.32 E-value=1.4e+02 Score=21.25 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=19.3
Q ss_pred cCCcEEEEEEeCCCEEEECCCCeEEEEe
Q 027839 130 TADKLISKTVKKGEIYVFPKALVHFQKN 157 (218)
Q Consensus 130 ~~~~~~~~~L~~Gd~~~iP~g~~H~~~N 157 (218)
++|......++.||.+++|...--.+..
T Consensus 49 ~~g~~~~~~vk~GD~Vl~~~~~g~~v~~ 76 (93)
T PF00166_consen 49 ENGEEVPMDVKVGDKVLFPKYAGTEVKF 76 (93)
T ss_dssp TTSSEEETSS-TTSEEEEETTTSEEEEE
T ss_pred CCCcEeeeeeeeccEEeccccCceEEEE
Confidence 3455556789999999999987555544
No 163
>smart00153 VHP Villin headpiece domain.
Probab=22.66 E-value=95 Score=18.31 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=17.3
Q ss_pred CCHHHHHHHcCCCHHHHHHHH
Q 027839 190 VPDNVLTKAFQVGTKEIEKIK 210 (218)
Q Consensus 190 ~~~~vl~~af~~~~~~v~~l~ 210 (218)
++++..++.||++.++..+|.
T Consensus 2 LsdeeF~~vfgmsr~eF~~LP 22 (36)
T smart00153 2 LSDEDFEEVFGMTREEFYKLP 22 (36)
T ss_pred CCHHHHHHHHCCCHHHHHhCc
Confidence 568888999999999888764
No 164
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=22.50 E-value=79 Score=28.58 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=17.5
Q ss_pred EEEEeCCCEEEECCCCeEEEEe
Q 027839 136 SKTVKKGEIYVFPKALVHFQKN 157 (218)
Q Consensus 136 ~~~L~~Gd~~~iP~g~~H~~~N 157 (218)
...|++|+.+++|+|.+|....
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEEE
T ss_pred EEEecCCceEEecCCCcccccc
Confidence 4689999999999999998754
No 165
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=21.90 E-value=97 Score=18.31 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=15.5
Q ss_pred CCHHHHHHHcCCCHHHHHHHH
Q 027839 190 VPDNVLTKAFQVGTKEIEKIK 210 (218)
Q Consensus 190 ~~~~vl~~af~~~~~~v~~l~ 210 (218)
++++.-.+.|+++.++..+|.
T Consensus 2 Lsd~dF~~vFgm~~~eF~~lP 22 (36)
T PF02209_consen 2 LSDEDFEKVFGMSREEFYKLP 22 (36)
T ss_dssp S-HHHHHHHHSS-HHHHHHS-
T ss_pred cCHHHHHHHHCCCHHHHHHCh
Confidence 568888999999999988764
No 166
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=21.37 E-value=1.5e+02 Score=22.87 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=20.9
Q ss_pred EEEEEEeCCCEEEECCCCeEEEE-eCCCC
Q 027839 134 LISKTVKKGEIYVFPKALVHFQK-NNGDK 161 (218)
Q Consensus 134 ~~~~~L~~Gd~~~iP~g~~H~~~-N~g~~ 161 (218)
.....+++||++++...++|.-. |.++.
T Consensus 179 ~~~~~~~~Gdvl~~~~~~~H~s~~N~s~~ 207 (211)
T PF05721_consen 179 WVPVPMKAGDVLFFHSRLIHGSGPNTSDD 207 (211)
T ss_dssp CEEE-BSTTEEEEEETTSEEEEE-B-SSS
T ss_pred eEEeecCCCeEEEEcCCccccCCCCCCcC
Confidence 34678999999999999999874 44443
No 167
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=20.61 E-value=87 Score=19.88 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=16.1
Q ss_pred CCCHHHHHHHcCCCHHHHHH
Q 027839 189 PVPDNVLTKAFQVGTKEIEK 208 (218)
Q Consensus 189 ~~~~~vl~~af~~~~~~v~~ 208 (218)
.++.+.|++.+|+++.+|+|
T Consensus 28 ~vSS~~La~~~gi~~~qVRK 47 (50)
T PF06971_consen 28 RVSSQELAEALGITPAQVRK 47 (50)
T ss_dssp EE-HHHHHHHHTS-HHHHHH
T ss_pred eECHHHHHHHHCCCHHHhcc
Confidence 47789999999999999987
Done!