BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027840
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 73/157 (46%), Gaps = 27/157 (17%)
Query: 74 ARKVGAEFVGTLILIFAGTATAIV-----NQKTQGSET--------------LIGLAGST 114
A++ AE VGT IL+F G A++ N + +E IG+A +
Sbjct: 6 AKRFTAEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFA- 64
Query: 115 GLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIF 174
LA+ VI S G ISGAH+NPAVTIA ++ FP + V YI AQ + + +
Sbjct: 65 -LAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACV 123
Query: 175 HPI------MGGGVTVPSAGYGEAFALEFIISFNLMF 205
P +G P GYG+A E I +F LM
Sbjct: 124 GPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLML 160
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 80 EFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVT- 138
E +GT +L+ A+ + G L+ GL V +I + G+I+G+ LNPA T
Sbjct: 151 EAIGTFLLMLVIMGVAVDERAPPGFAGLV-----IGLTVGGIITTIGNITGSSLNPARTF 205
Query: 139 ---IAFAALKHFPWKHVPVYIGAQIMASLCAAF 168
+ + + W++ P+Y+ I+ ++ AA+
Sbjct: 206 GPYLGDSLMGINLWQYFPIYVIGPIVGAVAAAW 238
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAG---STGLAVMVVILSTGHISGA 131
RK+ AE GT L+F G+ +A++ E IG AG + GL V+ + + GHISG
Sbjct: 6 RKLAAESFGTFWLVFGGSGSAVLAAGFP--ELGIGFAGVALAFGLTVLTMAFAVGHISGG 63
Query: 132 HLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAA 167
H NPAVTI A FP K V Y+ AQ++ + AA
Sbjct: 64 HFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAA 99
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAG---STGLAVMVVILSTGHISGA 131
RK+ AE GT L+F G+ +A++ E IG AG + GL V+ + + GHISG
Sbjct: 6 RKLAAESFGTFWLVFGGSGSAVLAAGFP--ELGIGFAGVALAFGLTVLTMAFAVGHISGG 63
Query: 132 HLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAA 167
H NPAVTI A FP K V Y+ AQ++ + AA
Sbjct: 64 HFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAA 99
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAG---STGLAVMVVILSTGHISGA 131
RK+ AE GT L+F G+ +A++ E IG AG + GL V+ + + GHISG
Sbjct: 6 RKLAAESFGTFWLVFGGSGSAVLAAGFP--ELGIGFAGVALAFGLTVLTMAFAVGHISGG 63
Query: 132 HLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAA 167
H NPAVTI A FP K V Y+ AQ++ + AA
Sbjct: 64 HFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAA 99
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAG---STGLAVMVVILSTGHISGA 131
RK+ AE GT L+F G +A++ E IG AG + GL V+ + + GHISG
Sbjct: 6 RKLAAECFGTFWLVFGGCGSAVLAAGFP--ELGIGFAGVALAWGLTVLTMAFAVGHISGG 63
Query: 132 HLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAA 167
H NPAVTI A FP K V Y+ AQ++ + AA
Sbjct: 64 HFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAA 99
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAG---STGLAVMVVILSTGHISGA 131
RK+ AE GT L+F G +A++ E IG AG + GL V+ + + GHISG
Sbjct: 6 RKLAAECFGTFWLVFGGCGSAVLAAGFP--ELGIGFAGVALAFGLTVLTMAFAVGHISGG 63
Query: 132 HLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAA 167
H NPAVTI A FP K V Y+ AQ++ + AA
Sbjct: 64 HFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAA 99
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%)
Query: 74 ARKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHL 133
R+ EF+GT +L+F G T S L GLAV IL + +SGAHL
Sbjct: 10 VREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHL 69
Query: 134 NPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIFH 175
N AV+I +++ F K +PVY AQ++ + + G++H
Sbjct: 70 NLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYH 111
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAG---STGLAVMVVILSTGHISGA 131
RK+ AE GT L+F G +A++ E IG AG + GL V+ + + GHISG
Sbjct: 3 RKLAAECFGTFWLVFGGCGSAVLAAGFP--ELGIGFAGVALAFGLTVLTMAFAVGHISGG 60
Query: 132 HLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAA 167
H NPAVTI A FP K V Y+ AQ++ + AA
Sbjct: 61 HFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAA 96
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 54/97 (55%), Gaps = 7/97 (7%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQGSETL-IGLAG---STGLAVMVVILSTGHISG 130
RK+ AE GT L+F G +A++ G L IG AG + GL V+ + + GHISG
Sbjct: 6 RKLAAECFGTFWLVFGGCGSAVL---AAGFPALGIGFAGVALAWGLTVLTMAFAVGHISG 62
Query: 131 AHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAA 167
H NPAVTI A FP K V Y+ AQ++ + AA
Sbjct: 63 GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAA 99
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 73/155 (47%), Gaps = 27/155 (17%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQGSET-------------------LIGLAGSTG 115
++ AEF+GT IL+F G +A V T IGLA G
Sbjct: 6 KRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLA--FG 63
Query: 116 LAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFAL---KG 172
A+ I + G+ISG H+NPAVTI ++K FP + V YI AQ++ + +F G
Sbjct: 64 FAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAG 123
Query: 173 IFHPIMGG-GVTVPSAG--YGEAFALEFIISFNLM 204
I +GG G T P G Y +A E + +F LM
Sbjct: 124 IGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLM 158
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 14/100 (14%)
Query: 79 AEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVT 138
AE VGT +L+ A+ + +G +I GL V +I + G+ISG+ LNPA T
Sbjct: 149 AEVVGTFLLMITIMGIAVDERAPKGFAGII-----IGLTVAGIITTLGNISGSSLNPART 203
Query: 139 -------IAFAALKHFPWKHVPVYIGAQIMASLCAAFALK 171
+ FA W + +Y+ I+ ++ AA +
Sbjct: 204 FGPYLNDMIFAGTDL--WNYYSIYVIGPIVGAVLAALTYQ 241
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLN 134
R + AEF TL +F G ++ + G ++ +A + GLA+ ++ + GHISGAH+N
Sbjct: 11 RAIFAEFFATLFYVFFGLGASL--RWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVN 68
Query: 135 PAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPIMGGGVTV----PSAGYG 190
PAVT AF Y+ AQ++ ++ A L + P + G + + P G
Sbjct: 69 PAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVG 128
Query: 191 EAFALEFIISFNLMF 205
+A +E ++ +
Sbjct: 129 QATIVEIFLTLQFVL 143
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 12/141 (8%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQ---GSETLIGLAGSTGLAVMVVILSTGHISGA 131
R AEF+ TL+ ++ AT I + K GS L+G+A + G + V++ T ISG
Sbjct: 39 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGG 98
Query: 132 HLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCA-----AFALKGIFHPIMGGGVTVPS 186
H+NPAVT + VY+ AQ + ++C AF +KG ++ GGG +
Sbjct: 99 HINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAF-MKGPYNQ-FGGGANSVA 156
Query: 187 AGY--GEAFALEFIISFNLMF 205
GY G A E I +F L++
Sbjct: 157 LGYNKGTALGAEIIGTFVLVY 177
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 77 VGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPA 136
+GAE +GT +L++ + + + S I G AV +V L+T I+G +NPA
Sbjct: 165 LGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPA 224
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLN 134
R + AEF TL +F G ++ + G ++ +A + GLA+ ++ + GHISGAH+N
Sbjct: 7 RAIFAEFFATLFYVFFGLGASL--RWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVN 64
Query: 135 PAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPIMGGGVTV----PSAGYG 190
PAVT AF Y+ AQ++ ++ A L + P + G + + P G
Sbjct: 65 PAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVG 124
Query: 191 EAFALEFIISFNLM 204
+A +E ++ +
Sbjct: 125 QATIVEIFLTLQFV 138
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 75 RKVGAEFVGTLILIFAGTATAI-------VNQKTQGSETLIGLAGSTGLAVMVVILSTGH 127
R V AEF+ ++ IF +A+ NQ T + + ++ + GL++ + S GH
Sbjct: 12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGH 71
Query: 128 ISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPI----MGGGVT 183
ISGAHLNPAVT+ +YI AQ + ++ A L GI + +G
Sbjct: 72 ISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNAL 131
Query: 184 VPSAGYGEAFALEFIISFNLMF 205
P G+ +E I + L+
Sbjct: 132 APGVNSGQGLGIEIIGTLQLVL 153
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 12/141 (8%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQ---GSETLIGLAGSTGLAVMVVILSTGHISGA 131
R AEF+ TL+ ++ AT I + K GS L+G+A + G + V++ T ISG
Sbjct: 62 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGG 121
Query: 132 HLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCA-----AFALKGIFHPIMGGGVTVPS 186
H+NPAVT + VY+ AQ + ++C AF +KG ++ GGG +
Sbjct: 122 HINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAF-MKGPYNQ-FGGGANSVA 179
Query: 187 AGY--GEAFALEFIISFNLMF 205
GY G A E I +F L++
Sbjct: 180 LGYNKGTALGAEIIGTFVLVY 200
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 77 VGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPA 136
+GAE +GT +L++ + + + S I G AV +V L+T I+G +NPA
Sbjct: 188 LGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPA 247
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 12/141 (8%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQ---GSETLIGLAGSTGLAVMVVILSTGHISGA 131
R AEF+ TL+ ++ AT I + K GS L+G+A + G + V++ T ISG
Sbjct: 62 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGG 121
Query: 132 HLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCA-----AFALKGIFHPIMGGGVTVPS 186
H+NPAVT + VY+ AQ + ++C AF +KG ++ GGG +
Sbjct: 122 HINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAF-MKGPYNQ-FGGGANSVA 179
Query: 187 AGY--GEAFALEFIISFNLMF 205
GY G A E I +F L++
Sbjct: 180 LGYNKGTALGAEIIGTFVLVY 200
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 77 VGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPA 136
+GAE +GT +L++ + + + S I G AV +V L+T I+G +NPA
Sbjct: 188 LGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPA 247
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 12/141 (8%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQ---GSETLIGLAGSTGLAVMVVILSTGHISGA 131
R AEF+ TL+ ++ AT I + K GS L+G+A + G + V++ T ISG
Sbjct: 39 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGG 98
Query: 132 HLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCA-----AFALKGIFHPIMGGGVTVPS 186
H+NPAVT + VY+ AQ + ++C AF +KG ++ GGG +
Sbjct: 99 HINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAF-MKGPYNQ-FGGGANSVA 156
Query: 187 AGY--GEAFALEFIISFNLMF 205
GY G A E I +F L++
Sbjct: 157 LGYNKGTALGAEIIGTFVLVY 177
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 77 VGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPA 136
+GAE +GT +L++ + + + S I G AV +V L+T I+G +NPA
Sbjct: 165 LGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPA 224
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLN 134
R + AEF TL +F G ++ + G ++ +A + GLA+ ++ + GHISGAH+N
Sbjct: 5 RAIFAEFFATLFYVFFGLGASL--RWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVN 62
Query: 135 PAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPIMGGGVTV----PSAGYG 190
PAVT AF Y+ AQ++ ++ A L + P + G + + P G
Sbjct: 63 PAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVG 122
Query: 191 EAFALEFIISFNLM 204
+A +E ++ +
Sbjct: 123 QATIVEIFLTLQFV 136
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 12/141 (8%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQ---GSETLIGLAGSTGLAVMVVILSTGHISGA 131
R AEF+ TL+ ++ AT I + K GS L+G+A + G + V++ T ISG
Sbjct: 58 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGG 117
Query: 132 HLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCA-----AFALKGIFHPIMGGGVTVPS 186
H+NPAVT + VY+ AQ + ++C AF +KG ++ GGG +
Sbjct: 118 HINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAF-MKGPYNQ-FGGGANSVA 175
Query: 187 AGY--GEAFALEFIISFNLMF 205
GY G A E I +F L++
Sbjct: 176 LGYNKGTALGAEIIGTFVLVY 196
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 77 VGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPA 136
+GAE +GT +L++ + + + S I G AV +V L+T I+G +NPA
Sbjct: 184 LGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPA 243
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLN 134
R + AEF +L +F G ++ + G ++ +A + GLA+ ++ + GHISGAH+N
Sbjct: 11 RAICAEFFASLFYVFFGLGASL--RWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVN 68
Query: 135 PAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPIMGGGVTV----PSAGYG 190
PAVT AF Y+ AQ++ ++ A L + P + G + + P G
Sbjct: 69 PAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVG 128
Query: 191 EAFALEFIISFNLMF 205
+A +E ++ +
Sbjct: 129 QATIVEIFLTLQFVL 143
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQGSET-----LIGLAGSTGLAVMVVILSTGHIS 129
+ V AEF+ LI + + I GSE ++ ++ GL++ ++ GHIS
Sbjct: 14 KAVTAEFLAMLIFVLLSVGSTI---NWGGSENPLPVDMVLISLCFGLSIATMVQCFGHIS 70
Query: 130 GAHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPIMGGGVTVP---- 185
G H+NPAVT+A + YI AQ + ++ A L + P + GG+ V
Sbjct: 71 GGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHG 130
Query: 186 --SAGYGEAFALEFIISFNLMF 205
+AG+G +E II+F L+F
Sbjct: 131 NLTAGHG--LLVELIITFQLVF 150
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQGSET-----LIGLAGSTGLAVMVVILSTGHIS 129
+ V AEF+ LI + + I GSE ++ ++ GL++ ++ GHIS
Sbjct: 53 KAVTAEFLAMLIFVLLSVGSTI---NWGGSENPLPVDMVLISLCFGLSIATMVQCFGHIS 109
Query: 130 GAHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPIMGGGVTVP---- 185
G H+NPAVT+A + YI AQ + ++ A L + P + GG+ V
Sbjct: 110 GGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHG 169
Query: 186 --SAGYGEAFALEFIISFNLMF 205
+AG+G +E II+F L+F
Sbjct: 170 NLTAGHG--LLVELIITFQLVF 189
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQGSET-----LIGLAGSTGLAVMVVILSTGHIS 129
+ V AEF+ LI + + I GSE ++ ++ GL++ ++ GHIS
Sbjct: 14 KAVTAEFLAMLIFVLLSVGSTI---NWGGSENPLPVDMVLISLCFGLSIATMVQCFGHIS 70
Query: 130 GAHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPIMGGGVTVP---- 185
G H+NPAVT+A + YI AQ + ++ A L + P + GG+ V
Sbjct: 71 GGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHG 130
Query: 186 --SAGYGEAFALEFIISFNLMF 205
+AG+G +E II+F L+F
Sbjct: 131 NLTAGHG--LLVELIITFQLVF 150
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 22/148 (14%)
Query: 79 AEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVT 138
AEF+GT +LIF G + S ++ GL V + I T +SGAHLNPAVT
Sbjct: 13 AEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVT 72
Query: 139 IAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIF----------HPIMGGGVTV---- 184
IA F + V +I +Q+ + CAA + G++ H I+ G V
Sbjct: 73 IALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLA 132
Query: 185 --------PSAGYGEAFALEFIISFNLM 204
P + +AFA+E +I+ LM
Sbjct: 133 GTFSTYPNPHINFVQAFAVEMVITAILM 160
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 22/148 (14%)
Query: 79 AEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVT 138
AEF+GT +LIF G + S ++ GL V + I T +SGAHLNPAVT
Sbjct: 13 AEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVT 72
Query: 139 IAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIF----------HPIMGGGVTV---- 184
IA F + V +I +Q+ + CAA + G++ H I+ G V
Sbjct: 73 IALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLA 132
Query: 185 --------PSAGYGEAFALEFIISFNLM 204
P + +AFA+E +I+ LM
Sbjct: 133 GTFSTYPNPHINFVQAFAVEMVITAILM 160
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 75 RKVGAEFVGTLILIFAGTATAI----VNQKTQGSETLIGLAGSTGLAVMVVILSTGHISG 130
+ V AEF+ LI + + I + LI L GL++ ++ GHISG
Sbjct: 5 KAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLC--FGLSIATMVQCFGHISG 62
Query: 131 AHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPIMGGGVTVP----- 185
H+NPAVT+A + YI AQ + ++ A L + P + GG+ V
Sbjct: 63 GHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGN 122
Query: 186 -SAGYGEAFALEFIISFNLMF 205
+AG+G +E II+F L+F
Sbjct: 123 LTAGHG--LLVELIITFQLVF 141
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLN 134
+ V AEF+ TLI +F G +A+ + T++ +A + GLA+ + + G +SG H+N
Sbjct: 13 KAVFAEFLATLIFVFFGLGSAL--KWPSALPTILQIALAFGLAIGTLAQALGPVSGGHIN 70
Query: 135 PAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPIMGGG-----VTVPSAGY 189
PA+T+A Y+ AQ++ ++ A L G+ P+ G +
Sbjct: 71 PAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV-APLNARGNLAVNALNNNTTQ 129
Query: 190 GEAFALEFIISFNL 203
G+A +E I++F L
Sbjct: 130 GQAMVVELILTFQL 143
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Query: 75 RKVGAEFVGTLILIFAGTATAI-----VNQKTQGSETLIGLAGSTGLAVMVVILSTGHIS 129
R V AEF+ T + +F +A+ V + + ++ + GL++ + S GHIS
Sbjct: 12 RAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHIS 71
Query: 130 GAHLNPAVTIAFAALKHFPWKHVPVYIGAQIMASLCAAFALKGIFHPIMGGGV----TVP 185
GAHLNPAVT+ +YI AQ + ++ A L GI + G +
Sbjct: 72 GAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLAD 131
Query: 186 SAGYGEAFALEFIISFNLMF 205
G+ +E I + L+
Sbjct: 132 GVNSGQGLGIEIIGTLQLVL 151
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 75 RKVGAEFVGTLILIFAGTATAIVNQKTQGSETLIGLAG---STGLAVMVVILSTGHISGA 131
RK+ AEF GT L+F G +A+ E IG G + GL V+ + + G ISG
Sbjct: 31 RKLLAEFFGTFWLVFGGCGSAVFAAAFP--ELGIGFTGVALAFGLTVLTMAYAVGGISGG 88
Query: 132 HLNPAVTIAFAALKHFPWKHVPVYI 156
H NPAV++ FP + Y+
Sbjct: 89 HFNPAVSVGLTVAGRFPASSLVPYV 113
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 80 EFVGTLILIFAGTATA-IVNQKTQGSE------TLIGLAGSTGLAVMVVILSTGHISGAH 132
EFVGT + +++ A I NQ + + LI ++ G VMV + T +SG +
Sbjct: 51 EFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGN 110
Query: 133 LNPAVTIAFAALKHFP 148
LNPAVT+A + P
Sbjct: 111 LNPAVTLALVLARAIP 126
>pdb|3T8I|A Chain A, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|B Chain B, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|C Chain C, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|D Chain D, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
Length = 306
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 18/89 (20%)
Query: 96 IVNQKTQGSETLIGLAGSTGLAVMVVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVY 155
IV+ T +T+ L S ++ V + G++ + N V A L++ + VPVY
Sbjct: 5 IVDSDTATDDTIAILLASRFFQLLGVTIVAGNV---NYNQEVKNALFTLEYIGKQDVPVY 61
Query: 156 IGAQIMASLCAAFALKGIFHPIMGGGVTV 184
+G+Q PI+G TV
Sbjct: 62 LGSQ---------------RPILGNWRTV 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,049,170
Number of Sequences: 62578
Number of extensions: 167762
Number of successful extensions: 389
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 316
Number of HSP's gapped (non-prelim): 50
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)